Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
C10orf79	80217	broad.mit.edu	36	10	105980450	105980450	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025145	exon2	c.C207T	p.G69G	.	.	.
TCF7L2	6934	broad.mit.edu	36	10	114902139	114902139	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001146284	exon10	c.C1138T	p.R380X	.	.	.
ANKRD1	27063	broad.mit.edu	36	10	92665373	92665373	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014391	exon8	c.A756C	p.G252G	.	.	.
PLCE1	51196	broad.mit.edu	36	10	95977110	95977110	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001165979	exon4	c.G943A	p.E315K	.	.	.
ZBTB16	7704	broad.mit.edu	36	11	113623278	113623278	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006006	exon6	c.G1773A	p.T591T	.	.	.
GRAMD1B	57476	broad.mit.edu	36	11	122989457	122989457	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020716	exon15	c.C1679T	p.T560M	.	.	.
MRGPRX1	259249	broad.mit.edu	36	11	18912210	18912210	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_147199	exon1	c.G698C	p.G233A	.	.	.
PRDM11	56981	broad.mit.edu	36	11	45161091	45161091	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020229	exon5	c.G429A	p.A143A	.	.	.
MYBPC3	4607	broad.mit.edu	36	11	47310340	47310340	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000256	exon31	c.G3674T	p.R1225L	.	.	.
SPI1	6688	broad.mit.edu	36	11	47338111	47338111	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003120	exon3	c.G199A	p.E67K	.	.	.
OR51Q1	390061	broad.mit.edu	36	11	5400806	5400806	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004757	exon1	c.C800A	p.A267D	.	.	.
OR5R1	219479	broad.mit.edu	36	11	55941331	55941331	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004744	exon1	c.A954T	p.L318F	.	.	.
OR52E6	390078	broad.mit.edu	36	11	5818957	5818957	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005167	exon1	c.C747G	p.I249M	.	.	.
MACROD1	28992	broad.mit.edu	36	11	63523395	63523395	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014067	exon8	c.A875G	p.E292G	.	.	.
TRIM3	10612	broad.mit.edu	36	11	6434616	6434616	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006458	exon7	c.C916T	p.R306W	.	.	.
TUB	7275	broad.mit.edu	36	11	8076933	8076933	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_177972	exon9	c.C1051T	p.Q351X	.	.	.
CELA1	1990	broad.mit.edu	36	12	50022735	50022735	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001971	exon4	c.G217C	p.V73L	.	.	.
TPH2	121278	broad.mit.edu	36	12	70674536	70674536	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173353	exon8	c.A992T	p.K331M	.	.	.
KCNC2	3747	broad.mit.edu	36	12	73730819	73730819	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_139137	exon3	c.C1233A	p.N411K	.	.	.
RAD52	5893	broad.mit.edu	36	12	896198	896198	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_134424	exon8	c.C593T	p.P198L	.	.	.
PCDH9	5101	broad.mit.edu	36	13	66375706	66375706	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_203487	exon3	c.T3069C	p.P1023P	.	.	.
ABCC4	10257	broad.mit.edu	36	13	94524555	94524555	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005845	exon23	c.C2831T	p.T944M	.	.	.
NIN	51199	broad.mit.edu	36	14	50306935	50306935	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182944	exon12	c.G1355A	p.R452H	.	.	.
DCAF5	8816	broad.mit.edu	36	14	68590783	68590783	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003861	exon9	c.G2373A	p.E791E	.	.	.
FSIP1	161835	broad.mit.edu	36	15	37845120	37845120	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152597	exon4	c.C430G	p.L144V	.	.	.
MYO5A	4644	broad.mit.edu	36	15	50396563	50396563	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000259	exon39	c.A5308T	p.M1770L	.	.	.
VPS13C	54832	broad.mit.edu	36	15	59954436	59954436	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017684	exon75	c.G10216C	p.V3406L	.	.	.
KIAA1199	57214	broad.mit.edu	36	15	79017308	79017308	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018689	exon24	c.T3340G	p.L1114V	.	.	.
ACSM5	54988	broad.mit.edu	36	16	20338100	20338100	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017888	exon4	c.G465A	p.K155K	.	.	.
HS3ST2	9956	broad.mit.edu	36	16	22733702	22733702	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006043	exon1	c.C270T	p.A90A	.	.	.
USP31	57478	broad.mit.edu	36	16	23009575	23009575	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020718	exon7	c.A1286G	p.H429R	.	.	.
GGA2	23062	broad.mit.edu	36	16	23404878	23404878	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015044	exon8	c.C757G	p.R253G	.	.	.
PLK1	5347	broad.mit.edu	36	16	23599002	23599002	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005030	exon2	c.C505T	p.R169X	.	.	.
PPL	5493	broad.mit.edu	36	16	4874346	4874346	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002705	exon22	c.C4311T	p.A1437A	.	.	.
TNFSF13	8741	broad.mit.edu	36	17	7403183	7403184	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001198622	exon1	c.103_104insG	p.W35fs	.	.	.
ERAL1	26284	broad.mit.edu	36	17	24206220	24206220	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005702	exon1	c.G42C	p.S14S	.	.	.
ANKRD13B	124930	broad.mit.edu	36	17	24959220	24959220	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152345	exon3	c.C341G	p.A114G	.	.	.
CNTNAP1	8506	broad.mit.edu	36	17	38090601	38090601	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003632	exon4	c.C430T	p.R144C	.	.	.
RPTOR	57521	broad.mit.edu	36	17	76534159	76534159	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020761	exon26	c.C3123T	p.A1041A	.	.	.
TP53	7157	broad.mit.edu	36	17	7517790	7517796	+	Frame_Shift_Del	DEL	CTTGCGG	-	-	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	CTTGCGG	CTTGCGG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon8	c.867_873del	p.289_291del	.	.	.
RIOK3	8780	broad.mit.edu	36	18	19298183	19298183	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003831	exon4	c.A341T	p.E114V	.	.	.
C18orf8	29919	broad.mit.edu	36	18	19340978	19340978	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013326	exon3	c.A226T	p.N76Y	.	.	.
ARHGAP28	79822	broad.mit.edu	36	18	6872285	6872285	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001010000	exon10	c.C963A	p.I321I	.	.	.
GLT25D1	79709	broad.mit.edu	36	19	17549013	17549013	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024656	exon7	c.C959T	p.P320L	.	.	.
SLC25A42	284439	broad.mit.edu	36	19	19079742	19079742	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178526	exon7	c.A537G	p.R179R	.	.	.
C19orf35	374872	broad.mit.edu	36	19	2229991	2229991	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198532	exon3	c.G204A	p.Q68Q	.	.	.
EEF2	1938	broad.mit.edu	36	19	3935136	3935136	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001961	exon2	c.A216T	p.S72S	.	.	.
ZNF30	90075	broad.mit.edu	36	19	40127579	40127579	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001099437	exon5	c.C1872T	p.P624P	.	.	.
ARHGAP33	115703	broad.mit.edu	36	19	40970233	40970233	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052948	exon21	c.G2443T	p.D815Y	.	.	.
WDR62	284403	broad.mit.edu	36	19	41286628	41286628	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001083961	exon30	c.C4058T	p.S1353F	.	.	.
ZNF568	374900	broad.mit.edu	36	19	42133628	42133628	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198539	exon7	c.G1733T	p.R578I	.	.	.
POU2F2	5452	broad.mit.edu	36	19	47289881	47289881	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002698	exon12	c.C1090T	p.P364S	.	.	.
LILRA5	353514	broad.mit.edu	36	19	59515125	59515125	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021250	exon4	c.G230A	p.R77H	.	.	.
MUC16	94025	broad.mit.edu	36	19	8943940	8943940	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024690	exon1	c.A8875T	p.T2959S	.	.	.
ADORA3	140	broad.mit.edu	36	1	111833010	111833010	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001081976	exon3	c.C374T	p.T125I	.	.	.
SLC22A15	55356	broad.mit.edu	36	1	116375587	116375587	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018420	exon6	c.C806G	p.A269G	.	.	.
SPAG17	200162	broad.mit.edu	36	1	118399969	118399969	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_206996	exon19	c.A2632G	p.I878V	.	.	.
GJA5	2702	broad.mit.edu	36	1	145697444	145697444	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181703	exon2	c.G527C	p.G176A	.	.	.
F5	2153	broad.mit.edu	36	1	167792609	167792609	+	Nonsense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000130	exon6	c.C851G	p.S284X	.	.	.
KIAA1751	85452	broad.mit.edu	36	1	1887712	1887712	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080484	exon12	c.C1359T	p.P453P	.	.	.
NSL1	25936	broad.mit.edu	36	1	210979500	210979500	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015471	exon5	c.A566C	p.K189T	.	.	.
RNF19B	127544	broad.mit.edu	36	1	33180506	33180506	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153341	exon7	c.T1547G	p.F516C	.	.	.
CSMD2	114784	broad.mit.edu	36	1	34173979	34173979	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052896	exon4	c.C561T	p.A187A	.	.	.
PTGER3	5733	broad.mit.edu	36	1	71250491	71250491	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198715	exon2	c.G1162T	p.A388S	.	.	.
CCBL2	56267	broad.mit.edu	36	1	89187476	89187476	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001008662	exon10	c.C925G	p.P309A	.	.	.
TTI1	9675	broad.mit.edu	36	20	36061014	36061014	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014657	exon6	c.G2783C	p.R928T	.	.	.
ACOT8	10005	broad.mit.edu	36	20	43917241	43917242	+	Missense_Mutation	DNP	GG	AA	AA	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005469	exon2	c.225_226TT	.	.	.	.
CLIC6	54102	broad.mit.edu	36	21	35010644	35010644	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_053277	exon6	c.G2055T	p.M685I	.	.	.
IL18R1	8809	broad.mit.edu	36	2	102358829	102358829	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003855	exon4	c.A499G	p.K167E	.	.	.
ROCK2	9475	broad.mit.edu	36	2	11258597	11258597	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004850	exon23	c.G2847T	p.E949D	.	.	.
DPP10	57628	broad.mit.edu	36	2	116265350	116265350	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001178036	exon20	c.T1498C	p.S500P	.	.	.
TTC32	130502	broad.mit.edu	36	2	19965047	19965047	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001008237	exon1	c.C50T	p.A17V	.	.	.
CDK15	65061	broad.mit.edu	36	2	202380574	202380574	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139158	exon2	c.G83A	p.C28Y	.	.	.
THADA	63892	broad.mit.edu	36	2	43632876	43632876	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001083953	exon18	c.A2781C	p.I927I	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50553003	50553003	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135659	exon17	c.C3301T	p.R1101W	.	.	.
USP34	9736	broad.mit.edu	36	2	61327066	61327066	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014709	exon50	c.G6445A	p.D2149N	.	.	.
NKTR	4820	broad.mit.edu	36	3	42654715	42654716	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005385	exon13	c.2515_2516insA	p.E839fs	.	.	.
COL6A5	256076	broad.mit.edu	36	3	131641787	131641787	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153264	exon35	c.G5915A	p.R1972Q	.	.	.
OTOL1	131149	broad.mit.edu	36	3	162697321	162697321	+	Nonsense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080440	exon1	c.T32G	p.L11X	.	.	.
PLCL2	23228	broad.mit.edu	36	3	17027325	17027325	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001144382	exon3	c.G1464C	p.X488Y	.	.	.
GLRB	2743	broad.mit.edu	36	4	158218722	158218723	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001166060	exon2	c.96_97insA	p.G32fs	.	.	.
BOD1L	259282	broad.mit.edu	36	4	13224940	13224940	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_148894	exon4	c.A1152T	p.K384N	.	.	.
KLHL5	51088	broad.mit.edu	36	4	38774781	38774781	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015990	exon6	c.G1326T	p.M442I	.	.	.
PTPN13	5783	broad.mit.edu	36	4	87841603	87841603	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080684	exon7	c.C820A	p.P274T	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13915766	13915766	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001369	exon29	c.G4687A	p.G1563S	.	.	.
JAKMIP2	9832	broad.mit.edu	36	5	147008143	147008143	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014790	exon5	c.C925T	p.R309X	.	.	.
TLX3	30012	broad.mit.edu	36	5	170669901	170669901	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021025	exon2	c.G564C	p.Q188H	.	.	.
PRLR	5618	broad.mit.edu	36	5	35106096	35106096	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000949	exon7	c.T572G	p.F191C	.	.	.
OXCT1	5019	broad.mit.edu	36	5	41798054	41798054	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000436	exon14	c.G1254C	p.K418N	.	.	.
ADAMTS16	170690	broad.mit.edu	36	5	5292385	5292385	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_139056	exon15	c.A2276T	p.N759I	.	.	.
PTCD2	79810	broad.mit.edu	36	5	71658288	71658288	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024754	exon3	c.G314A	p.R105Q	.	.	.
GPR98	84059	broad.mit.edu	36	5	90109534	90109534	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032119	exon62	c.C12584T	p.P4195L	.	.	.
PREP	5550	broad.mit.edu	36	6	105832815	105832815	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002726	exon15	c.A2030T	p.K677M	.	.	.
MAN1A1	4121	broad.mit.edu	36	6	119664893	119664893	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005907	exon4	c.G775C	p.E259Q	.	.	.
UST	10090	broad.mit.edu	36	6	149304196	149304196	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005715	exon3	c.A380G	p.E127G	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159572923	159572923	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032532	exon11	c.G1389T	p.E463D	.	.	.
PRPF4B	8899	broad.mit.edu	36	6	3986037	3986037	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003913	exon4	c.G1445T	p.R482L	.	.	.
EFHC1	114327	broad.mit.edu	36	6	52411181	52411181	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018100	exon3	c.C406T	p.P136S	.	.	.
DOPEY1	23033	broad.mit.edu	36	6	83912063	83912063	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015018	exon25	c.T5643G	p.V1881V	.	.	.
KIAA1009	22832	broad.mit.edu	36	6	84979441	84979441	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014895	exon6	c.T524G	p.L175R	.	.	.
ZNF292	23036	broad.mit.edu	36	6	87999833	87999833	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015021	exon5	c.C610T	p.Q204X	.	.	.
NDUFAF4	29078	broad.mit.edu	36	6	97445982	97445982	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014165	exon3	c.G247C	p.A83P	.	.	.
ETV1	2115	broad.mit.edu	36	7	13937758	13937758	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001163147	exon8	c.C696T	p.H232H	.	.	.
OR2F1	26211	broad.mit.edu	36	7	143288017	143288017	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012369	exon1	c.T21G	p.T7T	.	.	.
ARHGEF5	7984	broad.mit.edu	36	7	143690717	143690717	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005435	exon2	c.C22T	p.R8C	.	.	.
ABCB8	11194	broad.mit.edu	36	7	150362383	150362383	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007188	exon3	c.G499A	p.V167I	.	.	.
PTPN12	5782	broad.mit.edu	36	7	77050814	77050814	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002835	exon4	c.T292C	p.Y98H	.	.	.
PCLO	27445	broad.mit.edu	36	7	82289738	82289738	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014510	exon20	c.C14800T	p.R4934C	.	.	.
ANKIB1	54467	broad.mit.edu	36	7	91858552	91858552	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019004	exon16	c.G2189C	p.R730P	.	.	.
SLC25A13	10165	broad.mit.edu	36	7	95656624	95656624	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014251	exon9	c.G851A	p.R284H	.	.	.
ZFAT	57623	broad.mit.edu	36	8	135683694	135683694	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001174157	exon5	c.G1264T	p.A422S	.	.	.
COL22A1	169044	broad.mit.edu	36	8	139959580	139959580	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152888	exon3	c.C253T	p.R85W	.	.	.
LZTS1	11178	broad.mit.edu	36	8	20156712	20156712	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021020	exon1	c.C261T	p.S87S	.	.	.
NPM2	10361	broad.mit.edu	36	8	21938918	21938918	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182795	exon3	c.G84T	p.R28R	.	.	.
POLR3D	661	broad.mit.edu	36	8	22161697	22161697	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001722	exon5	c.A447T	p.E149D	.	.	.
PDLIM2	64236	broad.mit.edu	36	8	22494914	22494914	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021630	exon3	c.G921A	p.A307A	.	.	.
TM2D2	83877	broad.mit.edu	36	8	38970309	38970309	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001024380	exon3	c.G214C	p.E72Q	.	.	.
TRPA1	8989	broad.mit.edu	36	8	73121318	73121318	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007332	exon17	c.C2045T	p.P682L	.	.	.
CDK20	23552	broad.mit.edu	36	9	89772282	89772283	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039803	exon8	c.956_957insC	p.H319fs	.	.	.
NUP188	23511	broad.mit.edu	36	9	130785413	130785413	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015354	exon18	c.C1817A	p.P606Q	.	.	.
TMEM141	85014	broad.mit.edu	36	9	138806280	138806280	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032928	exon3	c.A182G	p.Q61R	.	.	.
PHF2	5253	broad.mit.edu	36	9	95478825	95478825	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005392	exon21	c.C2961A	p.T987T	.	.	.
F9	2158	broad.mit.edu	36	X	138460924	138460924	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000133	exon6	c.T558A	p.T186T	.	.	.
MAGEC1	9947	broad.mit.edu	36	X	140822547	140822547	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005462	exon4	c.T1691G	p.F564C	.	.	.
DMD	1756	broad.mit.edu	36	X	32396568	32396568	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004006	exon23	c.G3130C	p.E1044Q	.	.	.
FAM47B	170062	broad.mit.edu	36	X	34872144	34872144	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152631	exon1	c.G1275A	p.P425P	.	.	.
STS	412	broad.mit.edu	36	X	7185299	7185299	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000351	exon3	c.C169T	p.R57W	.	.	.
MAGT1	84061	broad.mit.edu	36	X	76972960	76972960	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032121	exon9	c.C1086A	p.Y362X	.	.	.
GPR174	84636	broad.mit.edu	36	X	78313717	78313735	+	Frame_Shift_Del	DEL	TGACCATTGGCGAGTTGAT	-	-	novel	unknown	TCGA-AA-3955-01A-02W-0995-10	TCGA-AA-3955-10A-01W-0995-10	TGACCATTGGCGAGTTGAT	TGACCATTGGCGAGTTGAT	TGACCATTGGCGAGTTGAT	-	TGACCATTGGCGAGTTGAT	TGACCATTGGCGAGTTGAT	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032553	exon1	c.557_575del	p.186_192del	.	.	.