Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ZNF22	7570	broad.mit.edu	36	10	44819903	44819904	+	Splice_Site	INS	-	AAAATT	AAAATT	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	-	-	-	AAAATT	-	AAAATT	Unknown	Valid	Germline	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	.	.	.	.	.	.	.
CTNNA3	29119	broad.mit.edu	36	10	68969309	68969309	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013266	exon4	c.G417A	p.A139A	.	.	.
ITIH5	80760	broad.mit.edu	36	10	7645147	7645147	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_030569	exon14	c.G2734A	p.A912T	.	.	.
PRDM10	56980	broad.mit.edu	36	11	129292261	129292261	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020228	exon16	c.C2308T	p.R770C	.	.	.
WT1	7490	broad.mit.edu	36	11	32378145	32378145	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001198551	exon6	c.C387T	p.S129S	 WT1,peritoneum,NS,Substitution - Missense,-2 	.	.
FADS3	3995	broad.mit.edu	36	11	61397879	61397879	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021727	exon12	c.G1321A	p.A441T	.	.	.
TMEM135	65084	broad.mit.edu	36	11	86709907	86709907	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001168724	exon14	c.C1195T	p.R399X	.	.	.
RILPL2	196383	broad.mit.edu	36	12	122486905	122486905	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145058	exon1	c.G16A	p.V6M	.	.	.
GUCY2C	2984	broad.mit.edu	36	12	14713923	14713923	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004963	exon10	c.G1282A	p.G428S	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
ANP32D	23519	broad.mit.edu	36	12	47152851	47152851	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012404	exon1	c.T137C	p.L46S	.	.	.
TMCO3	55002	broad.mit.edu	36	13	113202386	113202386	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017905	exon4	c.T737G	p.I246S	.	.	.
SPERT	220082	broad.mit.edu	36	13	45186410	45186410	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152719	exon3	c.G1249A	p.V417M	.	.	.
SPTB	6710	broad.mit.edu	36	14	64311634	64311634	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001024858	exon22	c.G4804A	p.E1602K	.	.	.
KCNK10	54207	broad.mit.edu	36	14	87728346	87728346	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138317	exon5	c.G843A	p.T281T	.	.	.
TOX4	9878	broad.mit.edu	36	14	21031072	21031072	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014828	exon7	c.1457delA	p.Q486fs	.	.	.
RYR3	6263	broad.mit.edu	36	15	31739768	31739768	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001036	exon34	c.G4474A	p.V1492I	.	.	.
IGDCC3	9543	broad.mit.edu	36	15	63454694	63454694	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004884	exon2	c.C203T	p.T68I	.	.	.
CHRNA5	1138	broad.mit.edu	36	15	76669731	76669731	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000745	exon5	c.G943C	p.E315Q	.	.	.
NTRK3	4916	broad.mit.edu	36	15	86273464	86273464	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002530	exon16	c.G2095A	p.G699S	.	.	.
C16orf45	89927	broad.mit.edu	36	16	15582587	15582587	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001142469	exon4	c.C266A	p.T89N	.	.	.
ARL6IP1	23204	broad.mit.edu	36	16	18716834	18716834	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015161	exon3	c.C204T	p.S68S	.	.	.
RBBP6	5930	broad.mit.edu	36	16	24488713	24488713	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018703	exon16	c.G3099C	p.P1033P	.	.	.
ZKSCAN2	342357	broad.mit.edu	36	16	25158874	25158874	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012981	exon7	c.G2668A	p.V890M	.	.	.
FAM65A	79567	broad.mit.edu	36	16	66134603	66134603	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001193522	exon13	c.C2425T	p.R809C	.	.	.
CLEC18C	283971	broad.mit.edu	36	16	68777344	68777344	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173619	exon11	c.C1267T	p.R423C	.	.	.
KCNG4	93107	broad.mit.edu	36	16	82828175	82828175	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_172347	exon2	c.G418A	p.A140T	.	.	.
FXR2	9513	broad.mit.edu	36	17	7458550	7458551	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004860	exon1	c.26_27insG	p.D9fs	.	.	.
KRT27	342574	broad.mit.edu	36	17	36190178	36190178	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181537	exon3	c.G584A	p.R195Q	.	.	.
CRHR1	1394	broad.mit.edu	36	17	41249684	41249684	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001145148	exon3	c.C196T	p.R66W	.	.	.
ABCA5	23461	broad.mit.edu	36	17	64758259	64758259	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_172232	exon36	c.G4634A	p.R1545H	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7619337	7619337	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020877	exon29	c.C4773T	p.G1591G	.	.	.
TP53	7157	broad.mit.edu	36	17	7519107	7519124	+	In_Frame_Del	DEL	GAGCAGCGCTCATGGTGG	-	-	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	GAGCAGCGCTCATGGTGG	GAGCAGCGCTCATGGTGG	GAGCAGCGCTCATGGTGG	-	GAGCAGCGCTCATGGTGG	GAGCAGCGCTCATGGTGG	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001126114	exon5	c.531_548del	p.177_183del	 TP53,urinary_tract,bladder,Substitution - Nonsense,0 	.	.
BAHCC1	57597	broad.mit.edu	36	17	77042300	77042300	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080519	exon24	c.6010delA	p.K2004fs	.	.	.
CDH2	1000	broad.mit.edu	36	18	23847815	23847815	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001792	exon3	c.G229A	p.A77T	.	.	.
FHOD3	80206	broad.mit.edu	36	18	32594637	32594637	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025135	exon23	c.C3969T	p.D1323D	.	.	.
DNM2	1785	broad.mit.edu	36	19	10758347	10758347	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001190716	exon7	c.C957T	p.P319P	.	.	.
APC2	10297	broad.mit.edu	36	19	1408967	1408967	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005883	exon10	c.C1211T	p.P404L	.	.	.
NCAN	1463	broad.mit.edu	36	19	19199514	19199514	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004386	exon8	c.C2085T	p.P695P	.	.	.
SIPA1L3	23094	broad.mit.edu	36	19	43374701	43374701	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015073	exon17	c.C4507T	p.R1503W	.	.	.
PLA2G4C	8605	broad.mit.edu	36	19	53250090	53250090	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001159323	exon15	c.G1286A	p.R429H	.	.	.
SPACA4	171169	broad.mit.edu	36	19	53802097	53802097	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133498	exon1	c.C50T	p.T17M	.	.	.
SLC6A16	28968	broad.mit.edu	36	19	54488422	54488422	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014037	exon10	c.G1648A	p.G550S	.	.	.
LILRA1	11024	broad.mit.edu	36	19	59798567	59798567	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006863	exon5	c.T549C	p.S183S	.	.	.
SYT5	6861	broad.mit.edu	36	19	60381455	60381455	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003180	exon3	c.G173A	p.R58Q	.	.	.
FIZ1	84922	broad.mit.edu	36	19	60800776	60800776	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032836	exon2	c.G268A	p.D90N	.	.	.
MAST3	23031	broad.mit.edu	36	19	18115593	18115595	+	In_Frame_Del	DEL	CTG	-	-	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	CTG	CTG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015016	exon21	c.2273_2275del	p.758_759del	.	.	.
VPS13D	55187	broad.mit.edu	36	1	12259103	12259103	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018156	exon19	c.G2871A	p.A957A	.	.	.
CHRNB2	1141	broad.mit.edu	36	1	152810869	152810869	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000748	exon5	c.G946A	p.V316M	.	.	.
INSRR	3645	broad.mit.edu	36	1	155078827	155078827	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014215	exon18	c.G3224A	p.R1075Q	.	.	.
CD1A	909	broad.mit.edu	36	1	156493385	156493385	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001763	exon4	c.G790A	p.A264T	.	.	.
OR10J1	26476	broad.mit.edu	36	1	157676345	157676345	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012351	exon1	c.C173A	p.T58N	.	.	.
TPR	7175	broad.mit.edu	36	1	184598674	184598674	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003292	exon6	c.C614T	p.T205I	.	.	.
ASPM	259266	broad.mit.edu	36	1	195336691	195336691	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018136	exon18	c.C8313T	p.N2771N	.	.	.
BAI2	576	broad.mit.edu	36	1	31969094	31969094	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001703	exon29	c.C4274T	p.P1425L	 BAI2,central_nervous_system,brain,Substitution - Missense,0 	.	.
MTF1	4520	broad.mit.edu	36	1	38076884	38076884	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005955	exon4	c.G779A	p.R260Q	.	.	.
ODF2L	57489	broad.mit.edu	36	1	86594779	86594779	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020729	exon13	c.G1367T	p.S456I	.	.	.
CDK5RAP1	51654	broad.mit.edu	36	20	31422037	31422037	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016082	exon11	c.G1051A	p.V351I	.	.	.
ATP9A	10079	broad.mit.edu	36	20	49707012	49707012	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006045	exon14	c.G1378A	p.V460M	.	.	.
KCNJ15	3772	broad.mit.edu	36	21	38594029	38594029	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_170736	exon3	c.G976T	p.D326Y	.	.	.
ARHGAP15	55843	broad.mit.edu	36	2	144030470	144030470	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018460	exon11	c.C949T	p.R317X	.	.	.
TPO	7173	broad.mit.edu	36	2	1523476	1523476	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175721	exon14	c.C2590T	p.R864W	.	.	.
KCNH7	90134	broad.mit.edu	36	2	163082681	163082681	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173162	exon4	c.G697A	p.G233R	.	.	.
GORASP2	26003	broad.mit.edu	36	2	171527629	171527629	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015530	exon9	c.C945T	p.L315L	.	.	.
HOXD10	3236	broad.mit.edu	36	2	176690181	176690181	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002148	exon1	c.C374T	p.S125L	.	.	.
TTN	7273	broad.mit.edu	36	2	179303533	179303533	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133378	exon58	c.G14240T	p.C4747F	.	.	.
CCDC141	285025	broad.mit.edu	36	2	179441060	179441060	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173648	exon16	c.G2512T	p.D838Y	.	.	.
WDR35	57539	broad.mit.edu	36	2	19993706	19993706	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001006657	exon26	c.C3086T	p.A1029V	.	.	.
FAM117B	150864	broad.mit.edu	36	2	203330264	203330264	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173511	exon6	c.G1188A	p.T396T	.	.	.
ADAM23	8745	broad.mit.edu	36	2	207123071	207123071	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003812	exon9	c.G875A	p.R292H	.	.	.
CRYGA	1418	broad.mit.edu	36	2	208736305	208736305	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014617	exon2	c.C120T	p.S40S	.	.	.
PSME4	23198	broad.mit.edu	36	2	53988963	53988963	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014614	exon24	c.C2782T	p.R928W	.	.	.
PCBP1	5093	broad.mit.edu	36	2	70168678	70168678	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006196	exon1	c.T299C	p.L100P	.	.	.
LRRTM1	347730	broad.mit.edu	36	2	80383564	80383564	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178839	exon2	c.C892T	p.R298W	.	.	.
ASAP2	8853	broad.mit.edu	36	2	9402184	9402184	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135191	exon10	c.C922T	p.R308W	.	.	.
FGD5	152273	broad.mit.edu	36	3	14880699	14880699	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152536	exon2	c.T2586G	p.L862L	.	.	.
IGSF10	285313	broad.mit.edu	36	3	152648880	152648880	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178822	exon4	c.C1579T	p.R527W	.	.	.
ZBTB47	92999	broad.mit.edu	36	3	42676105	42676105	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145166	exon2	c.G1254C	p.P418P	.	.	.
CCR3	1232	broad.mit.edu	36	3	46282086	46282086	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178328	exon3	c.C496T	p.R166W	.	.	.
PRICKLE2	166336	broad.mit.edu	36	3	64108062	64108062	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198859	exon7	c.T1144A	p.S382T	.	.	.
ADAMTS9	56999	broad.mit.edu	36	3	64582973	64582973	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182920	exon18	c.C2627A	p.P876H	.	.	.
PLK4	10733	broad.mit.edu	36	4	129026431	129026431	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001190801	exon5	c.T333G	p.I111M	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155475582	155475582	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001142552	exon4	c.C2601A	p.F867L	.	.	.
GLRA3	8001	broad.mit.edu	36	4	175873268	175873268	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001042543	exon5	c.G520C	p.D174H	.	.	.
ADAM29	11086	broad.mit.edu	36	4	176133400	176133400	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001130705	exon3	c.G149T	p.G50V	.	.	.
PCDH7	5099	broad.mit.edu	36	4	30531012	30531012	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032457	exon2	c.C3314T	p.A1105V	.	.	.
ARAP2	116984	broad.mit.edu	36	4	35891271	35891271	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015230	exon4	c.G1030C	p.E344Q	.	.	.
MUC7	4589	broad.mit.edu	36	4	71381649	71381649	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	A	A	A	C	A	C	Unknown	Valid	Germline	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152291	exon3	c.A599C	p.Q200P	.	.	.
PCDHGB7	56099	broad.mit.edu	36	5	140778383	140778383	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032101	exon1	c.G773A	p.G258D	.	.	.
GRIA1	2890	broad.mit.edu	36	5	153006789	153006789	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001114183	exon3	c.C329T	p.T110M	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23562378	23562378	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020227	exon11	c.C1424A	p.A475D	.	.	.
GPR98	84059	broad.mit.edu	36	5	90005682	90005682	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032119	exon23	c.G4985A	p.R1662H	.	.	.
APC	324	broad.mit.edu	36	5	112203660	112203660	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.4416delT	p.H1472fs	 APC,large_intestine,NS,Substitution - Missense,-1 	.	.
NUP43	348995	broad.mit.edu	36	6	150108871	150108872	+	Missense_Mutation	DNP	CC	AA	AA	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198887	exon2	c.140_141TT	.	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152813470	152813470	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033071	exon27	c.G3399A	p.W1133X	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152813649	152813649	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033071	exon27	c.G3220A	p.D1074N	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152813930	152813930	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033071	exon26	c.G3152A	p.R1051Q	.	.	.
DST	667	broad.mit.edu	36	6	56436405	56436405	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015548	exon81	c.G14935A	p.A4979T	.	.	.
TTK	7272	broad.mit.edu	36	6	80801729	80801729	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001166691	exon16	c.G1797T	p.M599I	.	.	.
KIAA0319	9856	broad.mit.edu	36	6	24674952	24674953	+	Frame_Shift_Del	DEL	TT	-	-	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	TT	TT	TT	-	TT	TT	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001168377	exon14	c.2143_2144del	p.715_715del	.	.	.
LRRN3	54674	broad.mit.edu	36	7	110550708	110550708	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018334	exon2	c.G644A	p.R215H	.	.	.
CPA5	93979	broad.mit.edu	36	7	129794614	129794614	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127441	exon12	c.G1004A	p.R335Q	.	.	.
TSGA14	95681	broad.mit.edu	36	7	129827189	129827189	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018718	exon10	c.G900T	p.W300C	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131516695	131516695	+	Silent	SNP	C	T	T	rs10248377	byCluster;byFrequency;byHapMap	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020911	exon18	c.G3477A	p.T1159T	.	.	.
ARHGEF5	7984	broad.mit.edu	36	7	143691734	143691734	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005435	exon2	c.A1039G	p.T347A	.	.	.
ZNF746	155061	broad.mit.edu	36	7	148822414	148822414	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001163474	exon2	c.G138A	p.L46L	.	.	.
ACCN3	9311	broad.mit.edu	36	7	150377165	150377165	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020321	exon1	c.C260A	p.P87Q	.	.	.
PCLO	27445	broad.mit.edu	36	7	82417426	82417426	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033026	exon6	c.G10414A	p.V3472I	.	.	.
COX19	90639	broad.mit.edu	36	7	979403	979403	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001031617	exon2	c.A134G	p.N45S	.	.	.
XKR6	286046	broad.mit.edu	36	8	10793494	10793494	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173683	exon3	c.A1304T	p.E435V	.	.	.
TAF2	6873	broad.mit.edu	36	8	120842132	120842132	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003184	exon20	c.G2586A	p.Q862Q	.	.	.
ATAD2	29028	broad.mit.edu	36	8	124415417	124415417	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014109	exon24	c.G3360A	p.P1120P	.	.	.
VDAC3	7419	broad.mit.edu	36	8	42380104	42380104	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135694	exon8	c.A673G	p.K225E	.	.	.
PREX2	80243	broad.mit.edu	36	8	69266543	69266543	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024870	exon36	c.C4379A	p.P1460Q	.	.	.
CEP110	11064	broad.mit.edu	36	9	122970408	122970408	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007018	exon36	c.C6058G	p.L2020V	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89446743	89446743	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004938	exon10	c.G868C	p.A290P	.	.	.
RBM10	8241	broad.mit.edu	36	X	46924313	46924314	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005676	exon10	c.992_993insG	p.V331fs	.	.	.
MAP7D3	79649	broad.mit.edu	36	X	135146137	135146137	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001173517	exon6	c.C563T	p.S188F	.	.	.
RBBP7	5931	broad.mit.edu	36	X	16773110	16773110	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001198719	exon12	c.C1379T	p.T460M	.	.	.
HUWE1	10075	broad.mit.edu	36	X	53613331	53613331	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031407	exon48	c.C6494G	p.A2165G	.	.	.
MSN	4478	broad.mit.edu	36	X	64875164	64875164	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3941-01A-01W-0995-10	TCGA-AA-3941-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002444	exon11	c.G1304A	p.R435Q	.	.	.