Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
MKI67	4288	broad.mit.edu	36	10	129791487	129791487	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145966	exon12	c.G7527A	p.T2509T	.	.	.
RPP38	10557	broad.mit.edu	36	10	15185609	15185609	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001097590	exon3	c.C290G	p.A97G	.	.	.
CACNB2	783	broad.mit.edu	36	10	18868499	18868499	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_201596	exon14	c.G1823A	p.R608H	.	.	.
ZMYND11	10771	broad.mit.edu	36	10	272810	272810	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_212479	exon5	c.G471A	p.E157E	.	.	.
ZNF365	22891	broad.mit.edu	36	10	64052887	64052887	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199451	exon5	c.C1000A	p.H334N	.	.	.
OIT3	170392	broad.mit.edu	36	10	74330206	74330206	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152635	exon3	c.G502A	p.A168T	.	.	.
GATA3	2625	broad.mit.edu	36	10	8140505	8140505	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002051	exon3	c.C473T	p.P158L	.	.	.
PHYHIPL	84457	broad.mit.edu	36	10	60666320	60666320	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001143774	exon3	c.297delC	p.S99fs	.	.	.
YAP1	10413	broad.mit.edu	36	11	101486930	101486931	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001195044	exon1	c.141_142insC	p.A47fs	.	.	.
CARD16	114769	broad.mit.edu	36	11	104420491	104420491	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052889	exon2	c.G112A	p.E38K	.	.	.
CTR9	9646	broad.mit.edu	36	11	10742841	10742841	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014633	exon12	c.T1584A	p.P528P	.	.	.
OR10S1	219873	broad.mit.edu	36	11	123353197	123353197	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004474	exon1	c.C412A	p.L138M	.	.	.
ANO5	203859	broad.mit.edu	36	11	22228881	22228881	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001142649	exon11	c.T1029A	p.P343P	.	.	.
OSBPL5	114879	broad.mit.edu	36	11	3104323	3104323	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145638	exon3	c.G175A	p.D59N	.	.	.
WT1	7490	broad.mit.edu	36	11	32367259	32367259	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001198551	exon10	c.A830G	p.K277R	.	.	.
TSPAN18	90139	broad.mit.edu	36	11	44897406	44897406	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_130783	exon6	c.C399T	p.V133V	.	.	.
NEU3	10825	broad.mit.edu	36	11	74383280	74383280	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006656	exon2	c.G173A	p.R58Q	.	.	.
OR5P3	120066	broad.mit.edu	36	11	7803415	7803415	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153445	exon1	c.G681C	p.K227N	.	.	.
ODZ4	26011	broad.mit.edu	36	11	78046955	78046955	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001098816	exon34	c.G8106A	p.A2702A	.	.	.
PWP1	11137	broad.mit.edu	36	12	106630079	106630079	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007062	exon15	c.T1458G	p.I486M	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
CNTN1	1272	broad.mit.edu	36	12	39624072	39624072	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175038	exon13	c.C1483T	p.R495X	.	.	.
KRT81	3887	broad.mit.edu	36	12	50967260	50967260	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002281	exon7	c.G1140A	p.Q380Q	.	.	.
C1S	716	broad.mit.edu	36	12	7040070	7040070	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201442	exon3	c.G36A	p.W12X	.	.	.
KCNC2	3747	broad.mit.edu	36	12	73731070	73731070	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139137	exon3	c.T982C	p.L328L	.	.	.
COL4A1	1282	broad.mit.edu	36	13	109629659	109629659	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001845	exon30	c.A2304T	p.E768D	.	.	.
LATS2	26524	broad.mit.edu	36	13	20447309	20447309	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014572	exon8	c.C2967T	p.Y989Y	.	.	.
ATP8A2	51761	broad.mit.edu	36	13	25031869	25031869	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016529	exon15	c.G1363T	p.E455X	.	.	.
EDNRB	1910	broad.mit.edu	36	13	77390584	77390584	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001122659	exon1	c.C126T	p.T42T	.	.	.
STXBP6	29091	broad.mit.edu	36	14	24396131	24396131	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014178	exon3	c.G227A	p.R76Q	.	.	.
CLEC14A	161198	broad.mit.edu	36	14	37794340	37794340	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175060	exon1	c.T639C	p.S213S	.	.	.
CLEC14A	161198	broad.mit.edu	36	14	37794400	37794400	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175060	exon1	c.C579T	p.R193R	.	.	.
SLC39A9	55334	broad.mit.edu	36	14	68978634	68978634	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018375	exon3	c.C301A	p.H101N	.	.	.
MED6	10001	broad.mit.edu	36	14	70134168	70134168	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005466	exon2	c.A102T	p.S34S	.	.	.
KCNK10	54207	broad.mit.edu	36	14	87722147	87722147	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138317	exon7	c.C1117T	p.R373W	.	.	.
UBR7	55148	broad.mit.edu	36	14	92758449	92758449	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001100417	exon9	c.C933T	p.L311L	.	.	.
USP50	373509	broad.mit.edu	36	15	48623144	48623144	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_203494	exon3	c.A387C	p.Q129H	.	.	.
DYX1C1	161582	broad.mit.edu	36	15	53546602	53546602	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001033559	exon5	c.G455A	p.R152Q	.	.	.
ANKDD1A	348094	broad.mit.edu	36	15	63026798	63026798	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182703	exon13	c.G1283A	p.W428X	.	.	.
ZNF592	9640	broad.mit.edu	36	15	83146490	83146490	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014630	exon11	c.C3666T	p.A1222A	.	.	.
ACAN	176	broad.mit.edu	36	15	87192165	87192165	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135	exon9	c.C1624T	p.R542W	.	.	.
PRC1	9055	broad.mit.edu	36	15	89325886	89325886	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003981	exon5	c.G519A	p.E173E	.	.	.
ANKS3	124401	broad.mit.edu	36	16	4695178	4695179	+	Missense_Mutation	DNP	CA	AT	AT	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133450	exon8	c.786_787AT	.	.	.	.
TMEM188	255919	broad.mit.edu	36	16	48621198	48621198	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153261	exon4	c.T210A	p.P70P	.	.	.
CDH13	1012	broad.mit.edu	36	16	81623244	81623244	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001257	exon3	c.G286A	p.V96I	.	.	.
FAM104A	84923	broad.mit.edu	36	17	68740031	68740032	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001098832	exon1	c.10_11insG	p.R4fs	.	.	.
RAI1	10743	broad.mit.edu	36	17	17641694	17641694	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030665	exon3	c.T4707C	p.D1569D	.	.	.
SLC13A2	9058	broad.mit.edu	36	17	23841661	23841661	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145976	exon2	c.C165T	p.I55I	.	.	.
ACCN1	40	broad.mit.edu	36	17	29507518	29507518	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001094	exon1	c.C147T	p.F49F	.	.	.
RARA	5914	broad.mit.edu	36	17	35741023	35741023	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145302	exon2	c.G27A	p.P9P	.	.	.
TP53	7157	broad.mit.edu	36	17	7517747	7517747	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon8	c.C916T	p.R306X	 TP53,large_intestine,rectum,Substitution - Nonsense,0 	.	.
PTPN2	5771	broad.mit.edu	36	18	12826809	12826809	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080422	exon3	c.G242C	p.R81T	.	.	.
FHOD3	80206	broad.mit.edu	36	18	32552569	32552569	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_025135	exon16	c.C2785T	p.R929X	.	.	.
ZFP161	7541	broad.mit.edu	36	18	5280978	5280978	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003409	exon3	c.A1229T	p.N410I	.	.	.
ZNF878	729747	broad.mit.edu	36	19	12016741	12016741	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080404	exon5	c.C616T	p.R206C	.	.	.
ZNF44	51710	broad.mit.edu	36	19	12245624	12245624	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016264	exon4	c.G446T	p.G149V	.	.	.
ZNF563	147837	broad.mit.edu	36	19	12290507	12290507	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145276	exon4	c.G1332A	p.T444T	.	.	.
CXCL17	284340	broad.mit.edu	36	19	47629813	47629813	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198477	exon2	c.T115A	p.S39T	.	.	.
PSG6	5675	broad.mit.edu	36	19	48102954	48102954	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001031850	exon5	c.T1200G	p.T400T	.	.	.
ZNF234	10780	broad.mit.edu	36	19	49352521	49352521	+	Nonsense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006630	exon6	c.C512G	p.S171X	.	.	.
PNMAL2	57469	broad.mit.edu	36	19	51689180	51689180	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020709	exon1	c.G1383A	p.A461A	.	.	.
SIGLEC12	89858	broad.mit.edu	36	19	56694547	56694547	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033329	exon2	c.G690A	p.G230G	.	.	.
NLRP5	126206	broad.mit.edu	36	19	61231199	61231199	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153447	exon7	c.C1788T	p.Y596Y	.	.	.
C3	718	broad.mit.edu	36	19	6648724	6648724	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000064	exon20	c.G2522A	p.R841Q	.	.	.
MUC16	94025	broad.mit.edu	36	19	8907101	8907101	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024690	exon5	c.T35530C	p.S11844P	.	.	.
ZSCAN18	65982	broad.mit.edu	36	19	63287979	63287979	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145542	exon7	c.1586delG	p.G529fs	.	.	.
ZNF281	23528	broad.mit.edu	36	1	198645181	198645182	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012482	exon2	c.276_277insC	p.P92fs	.	.	.
CHIA	27159	broad.mit.edu	36	1	111658741	111658741	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201653	exon5	c.C314T	p.P105L	.	.	.
SYT6	148281	broad.mit.edu	36	1	114447822	114447822	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_205848	exon4	c.G861C	p.L287L	.	.	.
FLG2	388698	broad.mit.edu	36	1	150596008	150596008	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001014342	exon3	c.A878G	p.N293S	.	.	.
PGLYRP4	57115	broad.mit.edu	36	1	151580772	151580772	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020393	exon6	c.G580A	p.G194S	.	.	.
DENND4B	9909	broad.mit.edu	36	1	152176605	152176605	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014856	exon15	c.C2215T	p.P739S	.	.	.
CD1E	913	broad.mit.edu	36	1	156590406	156590406	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001185107	exon1	c.C4A	p.L2M	.	.	.
OR10K1	391109	broad.mit.edu	36	1	156702103	156702103	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004473	exon1	c.C128A	p.A43E	.	.	.
OR6N1	128372	broad.mit.edu	36	1	157002925	157002925	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005185	exon1	c.C172T	p.P58S	.	.	.
PYHIN1	149628	broad.mit.edu	36	1	157173382	157173382	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198930	exon2	c.T58C	p.Y20H	.	.	.
APOBEC4	403314	broad.mit.edu	36	1	181883524	181883524	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_203454	exon2	c.G1016A	p.G339E	.	.	.
LAMB3	3914	broad.mit.edu	36	1	207872582	207872582	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001017402	exon7	c.G791A	p.G264E	.	.	.
LAMB3	3914	broad.mit.edu	36	1	207874504	207874504	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001017402	exon5	c.C475T	p.R159W	.	.	.
WDR26	80232	broad.mit.edu	36	1	222665883	222665883	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025160	exon7	c.T1027A	p.F343I	.	.	.
TMEM57	55219	broad.mit.edu	36	1	25645916	25645916	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018202	exon2	c.G157T	p.E53X	.	.	.
KIAA0494	9813	broad.mit.edu	36	1	46926612	46926612	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014774	exon7	c.G987A	p.M329I	.	.	.
HFM1	164045	broad.mit.edu	36	1	91619127	91619127	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001017975	exon7	c.C803T	p.P268L	.	.	.
ADCK3	56997	broad.mit.edu	36	1	225219375	225219375	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020247	exon3	c.229delG	p.G77fs	.	.	.
C20orf186	149954	broad.mit.edu	36	20	31141000	31141000	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182519	exon7	c.C1026T	p.V342V	.	.	.
PANK2	80025	broad.mit.edu	36	20	3841258	3841258	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153638	exon4	c.G1389C	p.L463L	.	.	.
JPH2	57158	broad.mit.edu	36	20	42222067	42222067	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020433	exon2	c.C774T	p.S258S	.	.	.
NCAM2	4685	broad.mit.edu	36	21	21578529	21578529	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004540	exon3	c.G275A	p.R92H	.	.	.
DSCAM	1826	broad.mit.edu	36	21	41002409	41002409	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001389	exon2	c.G202A	p.D68N	.	.	.
GGT1	2678	broad.mit.edu	36	22	23340758	23340758	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013430	exon6	c.C180T	p.D60D	.	.	.
SGSM1	129049	broad.mit.edu	36	22	23619497	23619497	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001098497	exon17	c.G1870A	p.A624T	.	.	.
TBC1D10A	83874	broad.mit.edu	36	22	29018485	29018485	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031937	exon9	c.T1406G	p.V469G	.	.	.
ADSL	158	broad.mit.edu	36	22	39090266	39090266	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000026	exon11	c.C1142T	p.A381V	.	.	.
PDCL3	79031	broad.mit.edu	36	2	100552474	100552474	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024065	exon4	c.G227A	p.R76Q	.	.	.
FAP	2191	broad.mit.edu	36	2	162780733	162780733	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004460	exon10	c.C787T	p.R263W	.	.	.
FIGN	55137	broad.mit.edu	36	2	164176134	164176134	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018086	exon3	c.C454G	p.P152A	.	.	.
LRP2	4036	broad.mit.edu	36	2	169847703	169847703	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004525	exon10	c.C1097T	p.P366L	.	.	.
KIAA1715	80856	broad.mit.edu	36	2	176543773	176543773	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_030650	exon6	c.G322A	p.A108T	.	.	.
TTN	7273	broad.mit.edu	36	2	179368156	179368156	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133379	exon7	c.G983A	p.R328H	.	.	.
COL5A2	1290	broad.mit.edu	36	2	189608068	189608068	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000393	exon53	c.G4172C	p.R1391P	.	.	.
TNS1	7145	broad.mit.edu	36	2	218470864	218470864	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022648	exon6	c.G70T	p.A24S	.	.	.
KIF1A	547	broad.mit.edu	36	2	241350882	241350882	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004321	exon22	c.G2016A	p.E672E	.	.	.
KIF1A	547	broad.mit.edu	36	2	241351358	241351358	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004321	exon20	c.C1820T	p.T607M	.	.	.
HADHA	3030	broad.mit.edu	36	2	26313258	26313258	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000182	exon4	c.C283T	p.P95S	.	.	.
C2orf71	388939	broad.mit.edu	36	2	29147012	29147012	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001029883	exon1	c.C3620A	p.T1207N	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32512285	32512285	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016252	exon13	c.C3318T	p.F1106F	.	.	.
RSAD2	91543	broad.mit.edu	36	2	6953364	6953364	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080657	exon6	c.G926A	p.R309H	.	.	.
IMMT	10989	broad.mit.edu	36	2	86231958	86231958	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001100169	exon12	c.T1371C	p.S457S	.	.	.
SLC41A3	54946	broad.mit.edu	36	3	127269511	127269512	+	In_Frame_Ins	INS	-	ACA	ACA	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	-	-	-	ACA	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001008485	exon2	c.242_243insTGT	p.S81delinsLS	.	.	.
SEMA5B	54437	broad.mit.edu	36	3	124125216	124125216	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001031702	exon10	c.C1210T	p.R404C	.	.	.
UBA5	79876	broad.mit.edu	36	3	133873345	133873345	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198329	exon7	c.C446A	p.S149Y	.	.	.
SOX2	6657	broad.mit.edu	36	3	182913502	182913502	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003106	exon1	c.G660C	p.S220S	.	.	.
HTR3E	285242	broad.mit.edu	36	3	185306659	185306659	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182589	exon7	c.G1020A	p.E340E	.	.	.
PSMD2	5708	broad.mit.edu	36	3	185508129	185508129	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002808	exon18	c.G2237A	p.R746H	.	.	.
PCYT1A	5130	broad.mit.edu	36	3	197453288	197453288	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005017	exon8	c.T636G	p.D212E	.	.	.
SLC4A7	9497	broad.mit.edu	36	3	27411101	27411101	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003615	exon20	c.A3002G	p.K1001R	.	.	.
CYP8B1	1582	broad.mit.edu	36	3	42892231	42892231	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004391	exon1	c.C82T	p.R28C	.	.	.
TGM4	7047	broad.mit.edu	36	3	44918343	44918343	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003241	exon8	c.A887G	p.H296R	.	.	.
IL17RD	54756	broad.mit.edu	36	3	57107363	57107363	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017563	exon12	c.G1408A	p.A470T	.	.	.
FAM116A	201627	broad.mit.edu	36	3	57594048	57594048	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152678	exon15	c.G1337C	p.S446T	.	.	.
CTSO	1519	broad.mit.edu	36	4	157083821	157083821	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001334	exon2	c.G181A	p.E61K	.	.	.
ETFDH	2110	broad.mit.edu	36	4	159821156	159821156	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004453	exon2	c.G122A	p.R41Q	.	.	.
MFAP3L	9848	broad.mit.edu	36	4	171149119	171149119	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021647	exon3	c.C1215T	p.Y405Y	.	.	.
MFAP3L	9848	broad.mit.edu	36	4	171149836	171149836	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021647	exon3	c.C498T	p.V166V	.	.	.
ASB5	140458	broad.mit.edu	36	4	177379321	177379321	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080874	exon5	c.A649C	p.I217L	.	.	.
KLF3	51274	broad.mit.edu	36	4	38375251	38375251	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016531	exon6	c.T1010G	p.L337R	.	.	.
NIPAL1	152519	broad.mit.edu	36	4	47731701	47731701	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207330	exon5	c.G508A	p.G170R	.	.	.
JAKMIP1	152789	broad.mit.edu	36	4	6114994	6114994	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144720	exon10	c.C1506T	p.Y502Y	.	.	.
TECRL	253017	broad.mit.edu	36	4	64829843	64829843	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001010874	exon10	c.T862A	p.Y288N	.	.	.
EVC2	132884	broad.mit.edu	36	4	5621176	5621178	+	In_Frame_Del	DEL	TGA	-	-	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	TGA	TGA	TGA	TGA	TGA	TGA	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001166136	exon20	c.3211_3213del	p.1071_1071del	.	.	.
APC	324	broad.mit.edu	36	5	112203538	112203538	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C4294T	p.R1432X	 APC,large_intestine,rectum,Substitution - Nonsense,0 	.	.
PCDHB2	56133	broad.mit.edu	36	5	140456085	140456085	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018936	exon1	c.C1527T	p.N509N	.	.	.
PCDHB7	56129	broad.mit.edu	36	5	140533155	140533155	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018940	exon1	c.C555T	p.S185S	.	.	.
PCDHGB6	56100	broad.mit.edu	36	5	140769620	140769620	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018926	exon1	c.A1667G	p.N556S	.	.	.
GABRG2	2566	broad.mit.edu	36	5	161453520	161453520	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198904	exon2	c.C216A	p.N72K	.	.	.
GABRG2	2566	broad.mit.edu	36	5	161463577	161463577	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198904	exon6	c.A736C	p.R246R	.	.	.
UGT3A2	167127	broad.mit.edu	36	5	36071762	36071762	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001168316	exon6	c.T1265G	p.V422G	.	.	.
PDE4D	5144	broad.mit.edu	36	5	59225092	59225092	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001104631	exon1	c.C115A	p.H39N	.	.	.
NSUN2	54888	broad.mit.edu	36	5	6662989	6662989	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017755	exon12	c.G1273T	p.A425S	.	.	.
SV2C	22987	broad.mit.edu	36	5	75633003	75633003	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014979	exon12	c.T1877C	p.F626S	.	.	.
HAPLN1	1404	broad.mit.edu	36	5	82973188	82973188	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001884	exon5	c.C948T	p.Y316Y	.	.	.
APC	324	broad.mit.edu	36	5	112202079	112202079	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.2835delT	p.S945fs	.	.	.
SEC63	11231	broad.mit.edu	36	6	108336881	108336881	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007214	exon8	c.C676T	p.R226C	.	.	.
TMEM14C	51522	broad.mit.edu	36	6	10834154	10834154	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016462	exon4	c.G126A	p.L42L	.	.	.
C6orf174	387104	broad.mit.edu	36	6	127838398	127838398	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012279	exon6	c.C2466T	p.A822A	.	.	.
BCLAF1	9774	broad.mit.edu	36	6	136635969	136635969	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014739	exon7	c.G1902A	p.S634S	.	.	.
ITPR3	3710	broad.mit.edu	36	6	33734568	33734568	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002224	exon5	c.G513T	p.R171R	.	.	.
CRISP3	10321	broad.mit.edu	36	6	49804407	49804407	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006061	exon8	c.T772A	p.Y258N	.	.	.
EYS	346007	broad.mit.edu	36	6	66110780	66110780	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198283	exon9	c.G1471A	p.E491K	.	.	.
BAI3	577	broad.mit.edu	36	6	69814863	69814863	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001704	exon14	c.C2173A	p.R725R	.	.	.
OGDH	4967	broad.mit.edu	36	7	44653852	44653852	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001003941	exon4	c.C486T	p.P162P	.	.	.
COL1A2	1278	broad.mit.edu	36	7	93890318	93890318	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000089	exon40	c.C2517T	p.P839P	.	.	.
IQCE	23288	broad.mit.edu	36	7	2596131	2596131	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152558	exon14	c.1109delC	p.A370fs	.	.	.
BAZ1B	9031	broad.mit.edu	36	7	72494721	72494721	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032408	exon19	c.4193delA	p.Y1398fs	.	.	.
SPAG1	6674	broad.mit.edu	36	8	101247369	101247369	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003114	exon3	c.G292A	p.D98N	.	.	.
RIMS2	9699	broad.mit.edu	36	8	104967126	104967126	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001100117	exon4	c.A1123G	p.N375D	.	.	.
DPYS	1807	broad.mit.edu	36	8	105548273	105548273	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001385	exon1	c.G52A	p.D18N	.	.	.
COL22A1	169044	broad.mit.edu	36	8	139959451	139959451	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152888	exon3	c.A382G	p.S128G	.	.	.
KIAA0146	23514	broad.mit.edu	36	8	48483016	48483016	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080394	exon7	c.G817C	p.E273Q	.	.	.
PRKDC	5591	broad.mit.edu	36	8	48852838	48852838	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001081640	exon83	c.A11910T	p.P3970P	.	.	.
PXDNL	137902	broad.mit.edu	36	8	52547392	52547392	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144651	exon8	c.G720A	p.P240P	.	.	.
LY96	23643	broad.mit.edu	36	8	75084855	75084855	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015364	exon3	c.C268T	p.R90C	.	.	.
GEM	2669	broad.mit.edu	36	8	95341741	95341741	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181702	exon2	c.G167A	p.R56Q	.	.	.
UAP1L1	91373	broad.mit.edu	36	9	139092369	139092370	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207309	exon2	c.336_337insG	p.A112fs	.	.	.
OR13C8	138802	broad.mit.edu	36	9	106371736	106371736	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004483	exon1	c.C467T	p.S156L	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112348305	112348305	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153366	exon3	c.G875A	p.G292E	.	.	.
TLR4	7099	broad.mit.edu	36	9	119515067	119515067	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138554	exon3	c.G840C	p.L280L	.	.	.
DAB2IP	153090	broad.mit.edu	36	9	123575102	123575102	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032552	exon12	c.C2390T	p.P797L	.	.	.
MPDZ	8777	broad.mit.edu	36	9	13148060	13148060	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003829	exon23	c.G3409A	p.E1137K	.	.	.
CACNA1B	774	broad.mit.edu	36	9	140135884	140135885	+	Missense_Mutation	DNP	TC	AG	AG	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	TC	TC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000718	exon46	c.6632_6633AG	.	.	.	.
ANP32B	10541	broad.mit.edu	36	9	99800739	99800739	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006401	exon3	c.A285G	p.L95L	.	.	.
BCOR	54880	broad.mit.edu	36	X	39818083	39818084	+	Frame_Shift_Ins	INS	-	GTGT	GTGT	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	-	-	-	GTGT	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001123383	exon4	c.1460_1461insACAC	p.L487fs	.	.	.
ESX1	80712	broad.mit.edu	36	X	103381615	103381615	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153448	exon4	c.A1171G	p.I391V	.	.	.
GPC3	2719	broad.mit.edu	36	X	132497919	132497919	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001164618	exon8	c.G1594A	p.E532K	.	.	.
MCF2	4168	broad.mit.edu	36	X	138526228	138526228	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001099855	exon12	c.A1250C	p.E417A	.	.	.
GNL3L	54552	broad.mit.edu	36	X	54582222	54582222	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3930-01A-01W-0995-10	TCGA-AA-3930-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019067	exon3	c.C44T	p.S15F	.	.	.