Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target SCD 6319 broad.mit.edu 36 10 102097849 102097849 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005063 exon2 c.G66A p.A22A . . . SCD 6319 broad.mit.edu 36 10 102110585 102110585 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005063 exon6 c.G985A p.A329T . . . PITX3 5309 broad.mit.edu 36 10 103981506 103981506 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005029 exon3 c.C150T p.G50G . . . ARL3 403 broad.mit.edu 36 10 104439643 104439643 + Silent SNP A T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004311 exon4 c.T312A p.G104G . . . SLK 9748 broad.mit.edu 36 10 105751245 105751245 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014720 exon8 c.G918T p.E306D . . . SORCS3 22986 broad.mit.edu 36 10 106908660 106908660 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014978 exon11 c.G1650A p.L550L . . . VAX1 11023 broad.mit.edu 36 10 118887411 118887411 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199131 exon1 c.C147T p.G49G . . . FRMD4A 55691 broad.mit.edu 36 10 13738874 13738874 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018027 exon22 c.G2721A p.P907P . . . CACNB2 783 broad.mit.edu 36 10 18868556 18868556 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201596 exon14 c.G1880A p.R627H . . . NEBL 10529 broad.mit.edu 36 10 21164463 21164463 + Silent SNP T A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006393 exon14 c.A1434T p.A478A . . . APBB1IP 54518 broad.mit.edu 36 10 26840775 26840775 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019043 exon7 c.G625A p.E209K APBB1IP,lung,NS,Substitution - Nonsense,0 . . PTCHD3 374308 broad.mit.edu 36 10 27732224 27732224 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001034842 exon3 c.T1280G p.V427G . . . MKX 283078 broad.mit.edu 36 10 28070324 28070324 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173576 exon3 c.G304A p.E102K . . . DIP2C 22982 broad.mit.edu 36 10 449992 449992 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014974 exon8 c.C918T p.R306R . . . GDF2 2658 broad.mit.edu 36 10 48036410 48036410 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016204 exon1 c.C290T p.T97M . . . MAPK8 5599 broad.mit.edu 36 10 49303939 49303939 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002750 exon7 c.A691G p.I231V . . . NET1 10276 broad.mit.edu 36 10 5488100 5488100 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005863 exon9 c.C1086T p.V362V . . . PCDH15 65217 broad.mit.edu 36 10 55257245 55257245 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142767 exon30 c.G4161A p.P1387P . . . CALML5 51806 broad.mit.edu 36 10 5531131 5531131 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017422 exon1 c.G271A p.D91N . . . FBXO18 84893 broad.mit.edu 36 10 5977123 5977123 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032807 exon2 c.G121A p.A41T . . . PRKCQ 5588 broad.mit.edu 36 10 6510275 6510275 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006257 exon18 c.G2021A p.R674Q . . . HERC4 26091 broad.mit.edu 36 10 69384399 69384399 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022079 exon20 c.A2320G p.R774G . . . DDX50 79009 broad.mit.edu 36 10 70343928 70343928 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024045 exon7 c.G1051A p.V351I . . . HK1 3098 broad.mit.edu 36 10 70789786 70789786 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033498 exon6 c.C366T p.I122I . . . HK1 3098 broad.mit.edu 36 10 70830872 70830872 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_033498 exon21 c.G2741A p.R914Q . . . AIFM2 84883 broad.mit.edu 36 10 71544808 71544808 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198696 exon8 c.G844A p.A282T . . . ANXA7 310 broad.mit.edu 36 10 74809875 74809875 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001156 exon10 c.A1009T p.T337S . . . ITIH5 80760 broad.mit.edu 36 10 7719257 7719257 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_030569 exon5 c.G592A p.A198T . . . ITIH2 3698 broad.mit.edu 36 10 7814348 7814348 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002216 exon14 c.C1689T p.D563D . . . DYDC1 143241 broad.mit.edu 36 10 82088304 82088304 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138812 exon7 c.G403A p.A135T . . . LARP4B 23185 broad.mit.edu 36 10 849147 849147 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015155 exon17 c.C1936T p.R646X . . . LRIT2 340745 broad.mit.edu 36 10 85975202 85975202 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017924 exon1 c.G55A p.A19T . . . EXOC6 54536 broad.mit.edu 36 10 94644756 94644756 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013848 exon4 c.T396C p.P132P . . . CYP2C8 1558 broad.mit.edu 36 10 96814616 96814616 + Silent SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000770 exon4 c.T573C p.D191D . . . C10orf12 26148 broad.mit.edu 36 10 98732879 98732879 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015652 exon1 c.G1742A p.R581H . . . SLIT1 6585 broad.mit.edu 36 10 98797461 98797461 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003061 exon16 c.G1610A p.R537H . . . ZDHHC16 84287 broad.mit.edu 36 10 99201884 99201884 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198043 exon3 c.C291T p.I97I . . . MMS19 64210 broad.mit.edu 36 10 99218130 99218130 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022362 exon13 c.C1087G p.P363A . . . KIAA1217 56243 broad.mit.edu 36 10 24856893 24856893 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_019590 exon14 c.2921delA p.E974fs . . . EPS8L2 64787 broad.mit.edu 36 11 713304 713305 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_022772 exon15 c.1405_1406insC p.T469fs . . . DYNC2H1 79659 broad.mit.edu 36 11 102510290 102510290 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001377 exon15 c.C2137T p.R713W . . . DYNC2H1 79659 broad.mit.edu 36 11 102564571 102564571 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001377 exon44 c.C7276T p.R2426C . . . PDGFD 80310 broad.mit.edu 36 11 103303032 103303032 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033135 exon6 c.C787T p.R263C . . . DDI1 414301 broad.mit.edu 36 11 103412941 103412941 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001711 exon1 c.C181A p.L61M . . . GRIA4 2893 broad.mit.edu 36 11 105302778 105302778 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077243 exon13 c.G1949A p.R650Q . . . CUL5 8065 broad.mit.edu 36 11 107430884 107430884 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003478 exon7 c.G772A p.V258I . . . EXPH5 23086 broad.mit.edu 36 11 107886165 107886165 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015065 exon6 c.C5279A p.P1760H . . . NCAM1 4684 broad.mit.edu 36 11 112611085 112611085 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001076682 exon13 c.C1785T p.D595D . . . SIDT2 51092 broad.mit.edu 36 11 116571737 116571737 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040455 exon25 c.G2332A p.A778T . . . TREH 11181 broad.mit.edu 36 11 118038849 118038849 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007180 exon4 c.G374A p.R125H . . . HYOU1 10525 broad.mit.edu 36 11 118421540 118421540 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006389 exon26 c.G2975A p.R992Q . . . ABCG4 64137 broad.mit.edu 36 11 118525964 118525964 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142505 exon2 c.G79A p.G27R . . . HSPA8 3312 broad.mit.edu 36 11 122437061 122437061 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153201 exon2 c.T182C p.M61T . . . TIRAP 114609 broad.mit.edu 36 11 125667670 125667670 + Silent SNP A T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039661 exon5 c.A156T p.S52S . . . TIRAP 114609 broad.mit.edu 36 11 125667755 125667755 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039661 exon5 c.C241T p.R81C . . . ST3GAL4 6484 broad.mit.edu 36 11 125783237 125783237 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006278 exon7 c.C363T p.N121N . . . PIK3C2A 5286 broad.mit.edu 36 11 17147269 17147269 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002645 exon1 c.C596A p.P199H . . . ABCC8 6833 broad.mit.edu 36 11 17371248 17371248 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000352 exon39 c.C4612T p.R1538X . . . KCNC1 3746 broad.mit.edu 36 11 17749916 17749916 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004976 exon2 c.G699A p.V233V . . . ATHL1 80162 broad.mit.edu 36 11 282614 282614 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025092 exon6 c.C1095T p.V365V . . . DNAJC24 120526 broad.mit.edu 36 11 31408457 31408457 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181706 exon5 c.C383A p.A128E . . . RAG1 5896 broad.mit.edu 36 11 36551555 36551555 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000448 exon2 c.C125A p.P42H . . . LRRC4C 57689 broad.mit.edu 36 11 40093010 40093010 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020929 exon2 c.G1409A p.R470Q . . . ACCS 84680 broad.mit.edu 36 11 44061568 44061568 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032592 exon14 c.T1273G p.F425V . . . MAPK8IP1 9479 broad.mit.edu 36 11 45883305 45883305 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005456 exon11 c.C1992T p.P664P . . . CKAP5 9793 broad.mit.edu 36 11 46731499 46731499 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008938 exon37 c.T4994C p.I1665T . . . NR1H3 10062 broad.mit.edu 36 11 47246736 47246736 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130102 exon9 c.C1122T p.S374S . . . MADD 8567 broad.mit.edu 36 11 47268831 47268831 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003682 exon20 c.G3249T p.M1083I . . . PTPRJ 5795 broad.mit.edu 36 11 48114239 48114239 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002843 exon9 c.C1688T p.P563L . . . OR51G1 79324 broad.mit.edu 36 11 4901999 4901999 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005237 exon1 c.C147T p.H49H . . . OR51A4 401666 broad.mit.edu 36 11 4924731 4924731 + Missense_Mutation SNP T C C rs1817206 byFrequency;bySubmitter;byHapMap TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T C Unknown Valid Germline Phase_I Capture Illumina Illumina HiSeq NM_001005329 exon1 c.A176G p.E59G . . . SMTNL1 219537 broad.mit.edu 36 11 57067122 57067122 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105565 exon1 c.C431T p.A144V . . . ZDHHC5 25921 broad.mit.edu 36 11 57222857 57222857 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015457 exon11 c.G1373T p.S458I . . . OR52N4 390072 broad.mit.edu 36 11 5732947 5732947 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005175 exon1 c.A401T p.Y134F . . . OR52N5 390075 broad.mit.edu 36 11 5755740 5755740 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001922 exon1 c.C701T p.A234V . . . MRPL16 54948 broad.mit.edu 36 11 59330401 59330401 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_017840 exon4 c.G751A p.V251M . . . MS4A10 341116 broad.mit.edu 36 11 60318081 60318081 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206893 exon5 c.G421A p.V141I . . . CDHR5 53841 broad.mit.edu 36 11 607483 607483 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031264 exon14 c.C1824T p.D608D . . . NXF1 10482 broad.mit.edu 36 11 62325442 62325442 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006362 exon8 c.G733A p.V245I . . . WDR74 54663 broad.mit.edu 36 11 62360027 62360027 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018093 exon5 c.G351A p.K117K . . . CHRM1 1128 broad.mit.edu 36 11 62434998 62434998 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000738 exon2 c.A151G p.K51E . . . SLC22A25 387601 broad.mit.edu 36 11 62741717 62741717 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199352 exon3 c.C573T p.A191A . . . SLC22A10 387775 broad.mit.edu 36 11 62814356 62814356 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039752 exon1 c.G143A p.R48H . . . MARK2 2011 broad.mit.edu 36 11 63426334 63426334 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017490 exon12 c.G1091A p.R364H . . . PLCB3 5331 broad.mit.edu 36 11 63786474 63786474 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184883 exon16 c.C1857T p.N619N . . . CDC42BPG 55561 broad.mit.edu 36 11 64351389 64351389 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017525 exon33 c.G4208A p.R1403H . . . ATG2A 23130 broad.mit.edu 36 11 64427646 64427646 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015104 exon25 c.T3527A p.L1176Q . . . PPP2R5B 5526 broad.mit.edu 36 11 64452181 64452181 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006244 exon5 c.A566G p.Y189C . . . BATF2 116071 broad.mit.edu 36 11 64513301 64513301 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138456 exon3 c.G701A p.R234H . . . MUS81 80198 broad.mit.edu 36 11 65389073 65389073 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025128 exon13 c.C1282A p.L428I . . . DCHS1 8642 broad.mit.edu 36 11 6607700 6607700 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003737 exon11 c.G4814T p.R1605L . . . ACTN3 89 broad.mit.edu 36 11 66083374 66083374 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001104 exon12 c.C1368T p.S456S . . . C11orf80 79703 broad.mit.edu 36 11 66312212 66312212 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024650 exon5 c.C529T p.Q177X . . . RCE1 9986 broad.mit.edu 36 11 66369971 66369971 + Silent SNP C T T rs11538048 unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005133 exon8 c.C819T p.C273C . . . RPS6KB2 6199 broad.mit.edu 36 11 66957055 66957055 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003952 exon8 c.G673A p.V225I . . . TCIRG1 10312 broad.mit.edu 36 11 67571559 67571559 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006019 exon11 c.G1249A p.A417T . . . LRP5 4041 broad.mit.edu 36 11 67933981 67933981 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002335 exon10 c.C2115T p.N705N . . . FOLR1 2348 broad.mit.edu 36 11 71584087 71584087 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016724 exon4 c.G293A p.R98Q . . . GDPD5 81544 broad.mit.edu 36 11 74831085 74831085 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030792 exon12 c.G1138A p.V380M . . . C11orf82 220042 broad.mit.edu 36 11 82320764 82320764 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145018 exon6 c.A736G p.T246A . . . CTSC 1075 broad.mit.edu 36 11 87707780 87707780 + Silent SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114173 exon2 c.T291C p.N97N . . . WEE1 7465 broad.mit.edu 36 11 9564652 9564652 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143976 exon9 c.G909A p.P303P . . . NUP98 4928 broad.mit.edu 36 11 3759889 3759889 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005387 exon2 c.35delG p.G12fs . . . CDHR5 53841 broad.mit.edu 36 11 608999 608999 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NM_021924 exon13 c.1560delG p.G520fs . . . VEGFB 7423 broad.mit.edu 36 11 63761239 63761239 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003377 exon5 c.379delA p.K127fs . . . PAH 5053 broad.mit.edu 36 12 101769623 101769623 + Nonsense_Mutation SNP G C C rs62642910 unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000277 exon8 c.C884G p.S295X . . . KLRK1 22914 broad.mit.edu 36 12 10417053 10417053 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199805 exon13 c.C578T p.A193V . . . POLR3B 55703 broad.mit.edu 36 12 105328849 105328849 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018082 exon12 c.G1082A p.R361Q . . . OAS3 4940 broad.mit.edu 36 12 111866745 111866745 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006187 exon3 c.C542T p.A181V . . . KSR2 283455 broad.mit.edu 36 12 116447213 116447213 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173598 exon14 c.C1959T p.H653H . . . CCDC60 160777 broad.mit.edu 36 12 118462808 118462808 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178499 exon14 c.C1558T p.R520X . . . SPPL3 121665 broad.mit.edu 36 12 119690557 119690557 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139015 exon8 c.C727T p.R243C . . . RNF34 80196 broad.mit.edu 36 12 120345581 120345581 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025126 exon6 c.G938A p.R313Q . . . KDM2B 84678 broad.mit.edu 36 12 120471177 120471177 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032590 exon6 c.C671T p.P224L . . . BCL7A 605 broad.mit.edu 36 12 120977108 120977108 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020993 exon5 c.C454T p.Q152X . . . KNTC1 9735 broad.mit.edu 36 12 121594706 121594706 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014708 exon8 c.T606C p.H202H . . . RILPL2 196383 broad.mit.edu 36 12 122481066 122481066 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145058 exon2 c.C433T p.R145C . . . NCOR2 9612 broad.mit.edu 36 12 123453046 123453046 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006312 exon16 c.G1497A p.Q499Q . . . GPRC5A 9052 broad.mit.edu 36 12 12953191 12953191 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003979 exon2 c.C741T p.S247S . . . HEBP1 50865 broad.mit.edu 36 12 13019625 13019625 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015987 exon4 c.C454T p.R152C . . . MMP17 4326 broad.mit.edu 36 12 130891185 130891185 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016155 exon4 c.G537A p.A179A . . . GSG1 83445 broad.mit.edu 36 12 13134723 13134723 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153823 exon2 c.G306A p.E102E . . . ATF7IP 55729 broad.mit.edu 36 12 14469493 14469493 + Silent SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018179 exon2 c.A1377G p.P459P . . . FBXL14 144699 broad.mit.edu 36 12 1572610 1572610 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152441 exon1 c.A884C p.Q295P . . . DERA 51071 broad.mit.edu 36 12 16076817 16076817 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015954 exon7 c.C712T p.R238W . . . PDE3A 5139 broad.mit.edu 36 12 20414058 20414058 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000921 exon1 c.G573A p.A191A . . . LRMP 4033 broad.mit.edu 36 12 25123637 25123637 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006152 exon7 c.C110T p.S37L . . . RASSF8 11228 broad.mit.edu 36 12 26109029 26109029 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007211 exon4 c.A435C p.K145N . . . CACNA1C 775 broad.mit.edu 36 12 2670405 2670405 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001129842 exon47 c.G6196A p.A2066T . . . PPFIBP1 8496 broad.mit.edu 36 12 27726830 27726830 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198915 exon21 c.T1733C p.I578T . . . DNM1L 10059 broad.mit.edu 36 12 32782479 32782479 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012062 exon16 c.C1689G p.S563R . . . PRICKLE1 144165 broad.mit.edu 36 12 41146332 41146332 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144882 exon6 c.C706T p.R236C . . . CCDC77 84318 broad.mit.edu 36 12 412669 412669 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130148 exon7 c.C645T p.I215I . . . ADCY6 112 broad.mit.edu 36 12 47463090 47463090 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015270 exon1 c.G395A p.R132H . . . CACNB3 784 broad.mit.edu 36 12 47506862 47506862 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000725 exon11 c.C948T p.T316T . . . SCN8A 6334 broad.mit.edu 36 12 50431440 50431440 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014191 exon14 c.C2166T p.C722C . . . ACVR1B 91 broad.mit.edu 36 12 50665261 50665261 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020327 exon6 c.A842G p.H281R . . . KRT83 3889 broad.mit.edu 36 12 50997738 50997738 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002282 exon4 c.C744T p.Y248Y . . . KRT85 3891 broad.mit.edu 36 12 51043452 51043452 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002283 exon5 c.G796A p.V266I . . . KRT75 9119 broad.mit.edu 36 12 51113945 51113945 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004693 exon1 c.A411G p.Q137Q . . . KRT6C 286887 broad.mit.edu 36 12 51152196 51152196 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173086 exon2 c.G676A p.D226N . . . KRT4 3851 broad.mit.edu 36 12 51489467 51489467 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002272 exon4 c.C1023T p.D341D . . . KRT18 3875 broad.mit.edu 36 12 51632353 51632353 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_199187 exon7 c.G1132T p.A378S . . . MAP3K12 7786 broad.mit.edu 36 12 52161272 52161272 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193511 exon14 c.C2640T p.S880S . . . ITGA5 3678 broad.mit.edu 36 12 53099033 53099033 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002205 exon1 c.G217A p.G73R . . . NTF3 4908 broad.mit.edu 36 12 5411769 5411769 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001102654 exon1 c.G18A p.T6T . . . LRP1 4035 broad.mit.edu 36 12 55860841 55860841 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002332 exon33 c.C5511T p.D1837D . . . SHMT2 6472 broad.mit.edu 36 12 55912271 55912271 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166359 exon5 c.G460A p.G154S . . . R3HDM2 22864 broad.mit.edu 36 12 55950043 55950043 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014925 exon13 c.C1304T p.A435V . . . MBD6 114785 broad.mit.edu 36 12 56206842 56206842 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052897 exon7 c.G1647A p.Q549Q . . . CYP27B1 1594 broad.mit.edu 36 12 56445156 56445156 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000785 exon4 c.C695T p.T232M . . . PLEKHG6 55200 broad.mit.edu 36 12 6294561 6294561 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144857 exon3 c.G328A p.E110K . . . WIF1 11197 broad.mit.edu 36 12 63731420 63731420 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007191 exon10 c.A1116G p.P372P . . . LLPH 84298 broad.mit.edu 36 12 64804016 64804016 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032338 exon3 c.A261G p.L87L . . . IFFO1 25900 broad.mit.edu 36 12 6535277 6535277 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001193457 exon1 c.G180A p.P60P . . . LEPREL2 10536 broad.mit.edu 36 12 6818498 6818498 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014262 exon14 c.C1978T p.P660S . . . LRRC23 10233 broad.mit.edu 36 12 6892248 6892248 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135217 exon7 c.C852T p.D284D . . . TPH2 121278 broad.mit.edu 36 12 70659100 70659100 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173353 exon7 c.C907T p.R303W . . . KCNC2 3747 broad.mit.edu 36 12 73728296 73728296 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139137 exon4 c.C1684T p.R562C . . . KRR1 11103 broad.mit.edu 36 12 74188474 74188474 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007043 exon2 c.G105A p.T35T . . . CD163L1 283316 broad.mit.edu 36 12 7442174 7442174 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174941 exon7 c.G1682A p.G561E . . . NAV3 89795 broad.mit.edu 36 12 77122955 77122955 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014903 exon38 c.G6878A p.R2293Q . . . A2M 2 broad.mit.edu 36 12 9156240 9156240 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000014 exon3 c.G430T p.V144L . . . FAM71C 196472 broad.mit.edu 36 12 98566307 98566307 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153364 exon1 c.G224A p.R75H . . . ANKS1B 56899 broad.mit.edu 36 12 98724588 98724588 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152788 exon4 c.C394A p.L132I . . . SYT10 341359 broad.mit.edu 36 12 33470627 33470627 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198992 exon2 c.222delT p.F74fs . . . C1RL 51279 broad.mit.edu 36 12 7140542 7140542 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016546 exon6 c.1051delC p.L351fs . . . DUSP6 1848 broad.mit.edu 36 12 88268828 88268829 + Frame_Shift_Del DEL CC - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 CC CC Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001946 exon2 c.505_506del p.169_169del . . . SLC46A3 283537 broad.mit.edu 36 13 28185157 28185158 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_181785 exon3 c.720_721insA p.N240fs . . . PCID2 55795 broad.mit.edu 36 13 112881329 112881329 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018386 exon13 c.C1062T p.D354D . . . LAMP1 3916 broad.mit.edu 36 13 113023975 113023975 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005561 exon8 c.C1046T p.A349V . . . TMCO3 55002 broad.mit.edu 36 13 113222960 113222960 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017905 exon8 c.C1254T p.L418L . . . GPR12 2835 broad.mit.edu 36 13 26231856 26231856 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005288 exon2 c.G109C p.E37Q . . . FLT1 2321 broad.mit.edu 36 13 27906278 27906278 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002019 exon5 c.C593T p.T198M . . . FRY 10129 broad.mit.edu 36 13 31674571 31674571 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023037 exon31 c.G3925A p.G1309S . . . STARD13 90627 broad.mit.edu 36 13 32601571 32601571 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178006 exon5 c.C1243A p.L415I . . . SERP2 387923 broad.mit.edu 36 13 43851812 43851812 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010897 exon2 c.G120C p.W40C . . . GTF2F2 2963 broad.mit.edu 36 13 44592853 44592853 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004128 exon1 c.C63T p.V21V . . . COG3 83548 broad.mit.edu 36 13 44963664 44963664 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031431 exon10 c.A1085G p.H362R . . . FNDC3A 22862 broad.mit.edu 36 13 48617940 48617940 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079673 exon8 c.T845C p.V282A . . . RCBTB1 55213 broad.mit.edu 36 13 49032144 49032144 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018191 exon5 c.G355A p.V119I . . . NEK5 341676 broad.mit.edu 36 13 51537572 51537572 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199289 exon22 c.C2099T p.P700L . . . DIAPH3 81624 broad.mit.edu 36 13 59333636 59333636 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030932 exon16 c.G1854A p.T618T . . . SLITRK1 114798 broad.mit.edu 36 13 83353254 83353254 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052910 exon1 c.C390T p.D130D . . . GPC6 10082 broad.mit.edu 36 13 93832789 93832789 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005708 exon7 c.G1273A p.G425R . . . SOX21 11166 broad.mit.edu 36 13 94162139 94162139 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007084 exon1 c.C166T p.P56S . . . FARP1 10160 broad.mit.edu 36 13 97818450 97818450 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005766 exon5 c.G398T p.R133M . . . UBAC2 337867 broad.mit.edu 36 13 98818096 98818096 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144072 exon8 c.G862A p.V288I . . . TRPC4 7223 broad.mit.edu 36 13 37109583 37109583 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016179 exon11 c.2391delT p.F797fs . . . INF2 64423 broad.mit.edu 36 14 104245229 104245230 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001031714 exon8 c.1580_1581insC p.S527fs . . . ACOT4 122970 broad.mit.edu 36 14 73130264 73130265 + Frame_Shift_Ins INS - TCAA TCAA novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 - - - TCAA - TCAA Unknown Valid Germline Phase_I Capture Illumina Illumina HiSeq NM_152331 exon2 c.563_564insTCAA p.L188fs . . . BEGAIN 57596 broad.mit.edu 36 14 100074618 100074618 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159531 exon6 c.G1223A p.R408Q . . . DYNC1H1 1778 broad.mit.edu 36 14 101536150 101536150 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001376 exon17 c.C3876T p.D1292D . . . TRAF3 7187 broad.mit.edu 36 14 102441550 102441550 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145725 exon12 c.C1383T p.N461N . . . MARK3 4140 broad.mit.edu 36 14 103039186 103039186 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128919 exon17 c.G2104A p.V702M . . . PPP1R13B 23368 broad.mit.edu 36 14 103272192 103272192 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015316 exon16 c.C3132T p.D1044D . . . TEP1 7011 broad.mit.edu 36 14 19924567 19924567 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007110 exon19 c.C2740T p.R914W . . . OR6S1 341799 broad.mit.edu 36 14 20179648 20179648 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001968 exon1 c.G43A p.V15I . . . TPPP2 122664 broad.mit.edu 36 14 20569092 20569092 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173846 exon3 c.G255C p.K85N . . . ARHGEF40 55701 broad.mit.edu 36 14 20613690 20613690 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018071 exon5 c.G1665A p.P555P . . . SUPT16H 11198 broad.mit.edu 36 14 20901134 20901134 + Silent SNP T G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007192 exon13 c.A1410C p.A470A . . . CHD8 57680 broad.mit.edu 36 14 20923862 20923862 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020920 exon38 c.C6659A p.P2220H . . . LRP10 26020 broad.mit.edu 36 14 22416011 22416011 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014045 exon7 c.G1577A p.R526H . . . PSMB11 122706 broad.mit.edu 36 14 22581772 22581772 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099780 exon1 c.C498T p.D166D . . . SLC7A8 23428 broad.mit.edu 36 14 22667201 22667201 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182728 exon8 c.C699T p.F233F . . . DCAF11 80344 broad.mit.edu 36 14 23656428 23656428 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001163484 exon4 c.C397T p.R133X . . . IPO4 79711 broad.mit.edu 36 14 23725809 23725809 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024658 exon9 c.C785T p.A262V . . . TSSK4 283629 broad.mit.edu 36 14 23745573 23745573 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174944 exon2 c.C244T p.H82Y . . . NFATC4 4776 broad.mit.edu 36 14 23909066 23909066 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136022 exon3 c.C811T p.R271C . . . KHNYN 23351 broad.mit.edu 36 14 23970764 23970764 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015299 exon3 c.G457A p.G153R . . . GZMH 2999 broad.mit.edu 36 14 24147419 24147419 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033423 exon2 c.G95A p.R32H . . . NOVA1 4857 broad.mit.edu 36 14 25987723 25987723 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002515 exon5 c.G806T p.G269V . . . HECTD1 25831 broad.mit.edu 36 14 30672354 30672354 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015382 exon24 c.G3763A p.A1255T . . . C14orf37 145407 broad.mit.edu 36 14 57674651 57674651 + Silent SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001872 exon2 c.T1179C p.T393T . . . RTN1 6252 broad.mit.edu 36 14 59263615 59263615 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021136 exon3 c.C1540T p.R514W . . . PPM1A 5494 broad.mit.edu 36 14 59819598 59819598 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021003 exon2 c.A424G p.I142V . . . SIX1 6495 broad.mit.edu 36 14 60182834 60182834 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005982 exon2 c.G775A p.G259S . . . GPHN 10243 broad.mit.edu 36 14 66701683 66701683 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024218 exon19 c.C1863G p.I621M . . . GALNTL1 57452 broad.mit.edu 36 14 68857197 68857197 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020692 exon2 c.C194T p.S65L . . . SIPA1L1 26037 broad.mit.edu 36 14 71124515 71124515 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015556 exon2 c.G173A p.R58Q . . . ABCD4 5826 broad.mit.edu 36 14 73823225 73823225 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005050 exon18 c.C1684T p.L562F . . . FAM164C 79696 broad.mit.edu 36 14 74608170 74608170 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024643 exon2 c.G1141A p.G381S . . . PTPN21 11099 broad.mit.edu 36 14 88016359 88016359 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007039 exon13 c.G1169A p.R390H . . . KCNK13 56659 broad.mit.edu 36 14 89720462 89720462 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022054 exon2 c.G589A p.V197I . . . TTC7B 145567 broad.mit.edu 36 14 90191154 90191154 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010854 exon12 c.G1395A p.T465T . . . CATSPERB 79820 broad.mit.edu 36 14 91195960 91195960 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024764 exon15 c.G1406A p.R469H . . . ASB2 51676 broad.mit.edu 36 14 93475319 93475319 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016150 exon6 c.G1361A p.G454D . . . ASB2 51676 broad.mit.edu 36 14 93475551 93475551 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016150 exon6 c.T1129C p.Y377H . . . SERPINA4 5267 broad.mit.edu 36 14 94103229 94103229 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006215 exon3 c.C819T p.D273D . . . CYP46A1 10858 broad.mit.edu 36 14 99236159 99236159 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006668 exon5 c.G411A p.Q137Q . . . PPP1R13B 23368 broad.mit.edu 36 14 103278171 103278171 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015316 exon11 c.1531delC p.Q511fs . . . ASPG 374569 broad.mit.edu 36 14 103641437 103641437 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001080464 exon10 c.1070delG p.R357fs . . . ACOT4 122970 broad.mit.edu 36 14 73130267 73130270 + Frame_Shift_Del DEL CTTA - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 CTTA CTTA CTTA - CTTA - Unknown Valid Germline Phase_I Capture Illumina Illumina HiSeq NM_152331 exon2 c.566_569del p.189_190del . . . TRPM1 4308 broad.mit.edu 36 15 29082373 29082373 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002420 exon27 c.A3756G p.E1252E . . . GCHFR 2644 broad.mit.edu 36 15 38846769 38846769 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005258 exon3 c.G185A p.R62H . . . JMJD7-PLA2G4B 8681 broad.mit.edu 36 15 39914364 39914364 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005090 exon2 c.T199C p.W67R . . . EIF3J 8669 broad.mit.edu 36 15 42639763 42639763 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003758 exon7 c.T596A p.I199N . . . DUOX1 53905 broad.mit.edu 36 15 43214751 43214751 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017434 exon6 c.C465T p.T155T . . . SHF 90525 broad.mit.edu 36 15 43251751 43251751 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138356 exon6 c.G851A p.R284Q . . . SLC24A5 283652 broad.mit.edu 36 15 46218482 46218482 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_205850 exon7 c.C896A p.P299H . . . SLC12A1 6557 broad.mit.edu 36 15 46329065 46329065 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184832 exon14 c.G1686A p.A562A . . . GALK2 2585 broad.mit.edu 36 15 47363194 47363194 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002044 exon7 c.G743A p.R248Q . . . CYP19A1 1588 broad.mit.edu 36 15 49290383 49290383 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031226 exon11 c.G1426A p.D476N . . . GNB5 10681 broad.mit.edu 36 15 50204033 50204033 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006578 exon10 c.C979T p.R327C . . . ONECUT1 3175 broad.mit.edu 36 15 50869131 50869131 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004498 exon1 c.C243T p.G81G . . . SLTM 79811 broad.mit.edu 36 15 56959594 56959594 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024755 exon21 c.G3001A p.A1001T . . . FAM96A 84191 broad.mit.edu 36 15 62160377 62160377 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032231 exon3 c.C316T p.R106X . . . IGDCC4 57722 broad.mit.edu 36 15 63468777 63468777 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020962 exon14 c.G2434A p.G812S . . . MYO9A 4649 broad.mit.edu 36 15 69931617 69931617 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006901 exon36 c.G6385A p.V2129I . . . MAN2C1 4123 broad.mit.edu 36 15 73447910 73447910 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006715 exon1 c.C68T p.P23L . . . CSPG4 1464 broad.mit.edu 36 15 73755368 73755368 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001897 exon10 c.C6547T p.R2183W . . . AGPHD1 123688 broad.mit.edu 36 15 76612619 76612619 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013619 exon5 c.G674A p.G225E . . . RASGRF1 5923 broad.mit.edu 36 15 77071183 77071183 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002891 exon22 c.C3084T p.G1028G . . . ADAMTSL3 57188 broad.mit.edu 36 15 82357641 82357641 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207517 exon14 c.C1495T p.R499W . . . NTRK3 4916 broad.mit.edu 36 15 86491576 86491576 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007156 exon5 c.G458A p.R153Q . . . MRPS11 64963 broad.mit.edu 36 15 86819416 86819416 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022839 exon4 c.G353A p.R118Q . . . PGPEP1L 145814 broad.mit.edu 36 15 97331814 97331814 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102612 exon3 c.G118A p.G40R . . . ADAMTS17 170691 broad.mit.edu 36 15 98333883 98333883 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139057 exon21 c.G3017A p.R1006H . . . BAHD1 22893 broad.mit.edu 36 15 38539245 38539245 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014952 exon2 c.1290delC p.H430fs . . . CLCN7 1186 broad.mit.edu 36 16 1455271 1455271 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001287 exon2 c.C211T p.P71S . . . ABCC1 4363 broad.mit.edu 36 16 16133175 16133175 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019862 exon26 c.C3671T p.P1224L . . . TMC5 79838 broad.mit.edu 36 16 19390930 19390930 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024780 exon7 c.G1064A p.R355H . . . GPRC5B 51704 broad.mit.edu 36 16 19791388 19791388 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016235 exon2 c.G281A p.G94D . . . GPRC5B 51704 broad.mit.edu 36 16 19791594 19791594 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016235 exon2 c.G75A p.S25S . . . LUC7L 55692 broad.mit.edu 36 16 198093 198093 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201412 exon4 c.G351A p.A117A . . . DNAH3 55567 broad.mit.edu 36 16 20883750 20883750 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017539 exon53 c.G8957A p.R2986Q . . . DNAH3 55567 broad.mit.edu 36 16 20883903 20883903 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017539 exon53 c.G8804A p.R2935Q . . . SCNN1G 6340 broad.mit.edu 36 16 23105141 23105141 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039 exon2 c.C48T p.P16P . . . GGA2 23062 broad.mit.edu 36 16 23401792 23401792 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015044 exon9 c.C833T p.T278M . . . NDUFAB1 4706 broad.mit.edu 36 16 23506055 23506055 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005003 exon2 c.C255T p.Y85Y . . . IL4R 3566 broad.mit.edu 36 16 27281387 27281387 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000418 exon11 c.C1213T p.R405W . . . QPRT 23475 broad.mit.edu 36 16 29598026 29598026 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014298 exon1 c.G7A p.A3T . . . BCL7C 9274 broad.mit.edu 36 16 30807756 30807756 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004765 exon5 c.A454G p.I152V . . . FBXL19 54620 broad.mit.edu 36 16 30847344 30847344 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099784 exon6 c.T743C p.L248P . . . SETD1A 9739 broad.mit.edu 36 16 30898002 30898002 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014712 exon14 c.C3394T p.R1132C . . . CREBBP 1387 broad.mit.edu 36 16 3764576 3764576 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004380 exon12 c.C2278T p.P760S . . . ADCY9 115 broad.mit.edu 36 16 3956011 3956011 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001116 exon11 c.C3828T p.D1276D . . . ADCY9 115 broad.mit.edu 36 16 3967525 3967525 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001116 exon9 c.C2787T p.A929A . . . ABCC11 85320 broad.mit.edu 36 16 46766686 46766686 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145186 exon26 c.C3682A p.L1228I . . . CYLD 1540 broad.mit.edu 36 16 49372681 49372681 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015247 exon11 c.G1542A p.T514T . . . FTO 79068 broad.mit.edu 36 16 52471291 52471291 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080432 exon6 c.G1010A p.R337H . . . GPR97 222487 broad.mit.edu 36 16 56277290 56277290 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170776 exon11 c.G1491A p.P497P . . . CNGB1 1258 broad.mit.edu 36 16 56549849 56549849 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135639 exon11 c.C803T p.P268L . . . ELMO3 79767 broad.mit.edu 36 16 65795194 65795194 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024712 exon20 c.C2235T p.N745N . . . ZDHHC1 29800 broad.mit.edu 36 16 65989627 65989627 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013304 exon8 c.C916T p.R306W . . . ATP6V0D1 9114 broad.mit.edu 36 16 66029979 66029979 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004691 exon8 c.G1009A p.A337T . . . ATP6V0D1 9114 broad.mit.edu 36 16 66030262 66030262 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004691 exon7 c.C829T p.L277F . . . SLC7A6 9057 broad.mit.edu 36 16 66887908 66887908 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003983 exon9 c.G1260A p.R420R . . . VPS4A 27183 broad.mit.edu 36 16 67911603 67911603 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013245 exon7 c.G679A p.D227N . . . AARS 16 broad.mit.edu 36 16 68861076 68861076 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001605 exon7 c.G908A p.R303Q . . . COG4 25839 broad.mit.edu 36 16 69087773 69087773 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015386 exon12 c.G1544A p.R515H . . . HYDIN 54768 broad.mit.edu 36 16 69570369 69570369 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032821 exon30 c.C4584T p.L1528L . . . HYDIN 54768 broad.mit.edu 36 16 69609612 69609612 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032821 exon23 c.G3565A p.V1189I . . . FTSJD1 55783 broad.mit.edu 36 16 69875468 69875468 + Silent SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018348 exon3 c.T1857C p.D619D . . . FA2H 79152 broad.mit.edu 36 16 73331447 73331447 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024306 exon2 c.G338A p.R113Q . . . RBFOX1 54715 broad.mit.edu 36 16 7508328 7508328 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145893 exon2 c.C266T p.A89V . . . CDYL2 124359 broad.mit.edu 36 16 79212179 79212179 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152342 exon4 c.G989A p.R330Q . . . HSDL1 83693 broad.mit.edu 36 16 82720751 82720751 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031463 exon5 c.C797T p.S266L . . . USP10 9100 broad.mit.edu 36 16 83370062 83370062 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005153 exon14 c.T2270A p.I757N . . . CLEC18B 497190 broad.mit.edu 36 16 73009466 73009466 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001011880 exon3 c.448delT p.Y150fs . . . COL1A1 1277 broad.mit.edu 36 17 45627098 45627099 + Frame_Shift_Ins INS - TA TA novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000088 exon21 c.1444_1445insTA p.G482_P483delinsX . . . RPS6KB1 6198 broad.mit.edu 36 17 55378871 55378872 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003161 exon15 c.1518_1519insA p.Y506fs . . . MYH4 4622 broad.mit.edu 36 17 10287486 10287486 + Silent SNP A C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017533 exon40 c.T5751G p.A1917A . . . DNAH9 1770 broad.mit.edu 36 17 11738483 11738483 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004662 exon5 c.C287T p.T96M . . . INPP5K 51763 broad.mit.edu 36 17 1348156 1348156 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016532 exon8 c.C787T p.R263C . . . INPP5K 51763 broad.mit.edu 36 17 1363987 1363987 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016532 exon2 c.G81A p.A27A . . . SLC43A2 124935 broad.mit.edu 36 17 1426729 1426729 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152346 exon13 c.T1460A p.L487Q . . . PIGL 9487 broad.mit.edu 36 17 16157651 16157651 + Silent SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004278 exon4 c.G492T p.V164V . . . ZNF287 57336 broad.mit.edu 36 17 16396032 16396032 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020653 exon6 c.A2149G p.T717A . . . ZNF624 57547 broad.mit.edu 36 17 16467943 16467943 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020787 exon6 c.G982T p.G328X . . . FLCN 201163 broad.mit.edu 36 17 17066568 17066568 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144997 exon7 c.T751A p.W251R . . . RPA1 6117 broad.mit.edu 36 17 1738837 1738837 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002945 exon14 c.A1493G p.Y498C . . . MYO15A 51168 broad.mit.edu 36 17 17962845 17962845 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016239 exon2 c.G6A p.A2A . . . FAM83G 644815 broad.mit.edu 36 17 18847839 18847839 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039999 exon2 c.C241A p.P81T . . . KSR1 8844 broad.mit.edu 36 17 22933843 22933843 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014238 exon5 c.C154T p.R52W . . . SDF2 6388 broad.mit.edu 36 17 24000417 24000417 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006923 exon3 c.T353C p.V118A . . . SLFN11 91607 broad.mit.edu 36 17 30704190 30704190 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001104589 exon6 c.C2004T p.D668D . . . C17orf66 256957 broad.mit.edu 36 17 31206447 31206447 + Silent SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152781 exon15 c.T1446C p.Y482Y . . . TRPV3 162514 broad.mit.edu 36 17 3404803 3404803 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_145068 exon2 c.C92T p.P31L . . . RPL23 9349 broad.mit.edu 36 17 34260202 34260202 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000978 exon4 c.C279T p.G93G . . . KRT24 192666 broad.mit.edu 36 17 36110989 36110989 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019016 exon3 c.C784T p.R262C . . . KRTAP9-4 85280 broad.mit.edu 36 17 36659687 36659687 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033191 exon1 c.G189A p.Q63Q . . . KRT13 3860 broad.mit.edu 36 17 36912796 36912796 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153490 exon4 c.C816T p.R272R . . . WNK4 65266 broad.mit.edu 36 17 38189498 38189498 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032387 exon3 c.G809A p.R270Q . . . ZZEF1 23140 broad.mit.edu 36 17 3864145 3864145 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015113 exon51 c.C8401T p.R2801W . . . TMEM101 84336 broad.mit.edu 36 17 39444912 39444912 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032376 exon4 c.G684A p.T228T . . . GRN 2896 broad.mit.edu 36 17 39783616 39783616 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002087 exon7 c.C630T p.D210D . . . ANKFY1 51479 broad.mit.edu 36 17 4029829 4029829 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016376 exon17 c.C2336T p.A779V . . . ARHGAP27 201176 broad.mit.edu 36 17 40828657 40828657 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199282 exon17 c.A1595C p.Q532P . . . HOXB3 3213 broad.mit.edu 36 17 43984579 43984579 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002146 exon3 c.C257T p.P86L . . . SPOP 8405 broad.mit.edu 36 17 45039618 45039618 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007229 exon9 c.C830T p.A277V . . . EME1 146956 broad.mit.edu 36 17 45808444 45808444 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166131 exon3 c.G794A p.G265D . . . EPN3 55040 broad.mit.edu 36 17 45969289 45969289 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017957 exon2 c.G373A p.E125K . . . CACNA1G 8913 broad.mit.edu 36 17 46036633 46036633 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198382 exon21 c.G4219A p.G1407R . . . TM4SF5 9032 broad.mit.edu 36 17 4630856 4630856 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003963 exon2 c.C201T p.A67A . . . VMO1 284013 broad.mit.edu 36 17 4635453 4635453 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182566 exon3 c.G553T p.G185C . . . NUP88 4927 broad.mit.edu 36 17 5231135 5231135 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002532 exon15 c.A1936C p.S646R . . . MRPS23 51649 broad.mit.edu 36 17 53273608 53273608 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016070 exon3 c.A228G p.S76S . . . MPO 4353 broad.mit.edu 36 17 53705894 53705894 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000250 exon9 c.G1501A p.G501S . . . BZRAP1 9256 broad.mit.edu 36 17 53741098 53741098 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004758 exon22 c.G4534A p.G1512R . . . TEX14 56155 broad.mit.edu 36 17 54004390 54004390 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198393 exon25 c.A3728G p.E1243G . . . CLTC 1213 broad.mit.edu 36 17 55088001 55088001 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004859 exon6 c.G800A p.S267N . . . TMEM49 81671 broad.mit.edu 36 17 55205915 55205915 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_030938 exon7 c.G601A p.G201R . . . TBX4 9496 broad.mit.edu 36 17 56915132 56915132 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018488 exon8 c.C1111A p.P371T . . . INTS2 57508 broad.mit.edu 36 17 57329675 57329675 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020748 exon11 c.G1455A p.M485I . . . MED13 9969 broad.mit.edu 36 17 57495408 57495408 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005121 exon2 c.T103C p.W35R . . . ACE 1636 broad.mit.edu 36 17 58928071 58928071 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178057 exon12 c.G1839A p.P613P . . . POLG2 11232 broad.mit.edu 36 17 59923513 59923513 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_007215 exon1 c.G36T p.K12N . . . ABCA8 10351 broad.mit.edu 36 17 64385348 64385348 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007168 exon31 c.C3986T p.A1329V . . . ALOX12 239 broad.mit.edu 36 17 6840168 6840168 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000697 exon1 c.G8T p.R3L . . . ASGR1 432 broad.mit.edu 36 17 7018243 7018243 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001197216 exon6 c.G415A p.A139T . . . C17orf28 283987 broad.mit.edu 36 17 70460706 70460706 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030630 exon16 c.C2042T p.T681M . . . DVL2 1856 broad.mit.edu 36 17 7073472 7073472 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004422 exon7 c.G766A p.V256I . . . GGA3 23163 broad.mit.edu 36 17 70747120 70747120 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014001 exon13 c.G1612T p.G538C . . . RECQL5 9400 broad.mit.edu 36 17 71137952 71137952 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004259 exon14 c.A1719C p.E573D . . . GALK1 2584 broad.mit.edu 36 17 71271634 71271634 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000154 exon2 c.G294A p.S98S . . . UNC13D 201294 broad.mit.edu 36 17 71347902 71347902 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199242 exon10 c.G857A p.R286Q . . . FBF1 85302 broad.mit.edu 36 17 71425841 71425841 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080542 exon20 c.C2198T p.T733M . . . EXOC7 23265 broad.mit.edu 36 17 71609425 71609425 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145299 exon3 c.C241T p.L81L . . . MPDU1 9526 broad.mit.edu 36 17 7427947 7427947 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004870 exon1 c.C43T p.P15S . . . UBB 7314 broad.mit.edu 36 17 16226510 16226510 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018955 exon2 c.564delC p.I188fs . . . FXR2 9513 broad.mit.edu 36 17 7436847 7436847 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004860 exon14 c.1619delC p.P540fs . . . CEP192 55125 broad.mit.edu 36 18 13039590 13039590 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032142 exon16 c.C2800T p.Q934X . . . CEP192 55125 broad.mit.edu 36 18 13106476 13106476 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032142 exon43 c.C7390T p.R2464X . . . DSG3 1830 broad.mit.edu 36 18 27309983 27309983 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001944 exon16 c.C2762A p.S921Y . . . KLHL14 57565 broad.mit.edu 36 18 28575951 28575951 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020805 exon3 c.G1007A p.R336Q . . . KIAA1632 57724 broad.mit.edu 36 18 41735063 41735063 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020964 exon26 c.G4542A p.P1514P . . . MAPK4 5596 broad.mit.edu 36 18 46509650 46509650 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002747 exon6 c.C1192T p.R398C . . . MBD2 8932 broad.mit.edu 36 18 49985392 49985392 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015832 exon2 c.C676T p.R226X . . . ATP8B1 5205 broad.mit.edu 36 18 53466879 53466879 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005603 exon28 c.C3595T p.R1199C . . . EPB41L3 23136 broad.mit.edu 36 18 5413422 5413422 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012307 exon11 c.C1294T p.R432C . . . EPB41L3 23136 broad.mit.edu 36 18 5423483 5423483 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012307 exon8 c.T897A p.D299E . . . MALT1 10892 broad.mit.edu 36 18 54552593 54552593 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173844 exon11 c.C1442T p.T481M . . . MALT1 10892 broad.mit.edu 36 18 54565713 54565713 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173844 exon16 c.A2101G p.I701V . . . ZNF532 55205 broad.mit.edu 36 18 54737936 54737936 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018181 exon4 c.G1437A p.T479T . . . EPB41L3 23136 broad.mit.edu 36 18 5479118 5479118 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_012307 exon2 c.C65T p.A22V . . . RNF152 220441 broad.mit.edu 36 18 57634371 57634371 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173557 exon2 c.G306A p.L102L . . . CLUL1 27098 broad.mit.edu 36 18 608060 608060 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014410 exon2 c.C60T p.C20C . . . TSHZ1 10194 broad.mit.edu 36 18 71127691 71127691 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005786 exon2 c.G1206A p.S402S . . . TSHZ1 10194 broad.mit.edu 36 18 71129127 71129127 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005786 exon2 c.G2642T p.R881M . . . ZNF516 9658 broad.mit.edu 36 18 72220114 72220114 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014643 exon4 c.C2944T p.P982S . . . ZNF516 9658 broad.mit.edu 36 18 72282379 72282379 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014643 exon3 c.G1620A p.A540A . . . TSHZ1 10194 broad.mit.edu 36 18 71127431 71127431 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005786 exon2 c.946delC p.P316fs . . . LMNB2 84823 broad.mit.edu 36 19 2382861 2382862 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032737 exon10 c.1570_1571insC p.S524fs . . . DNMT1 1786 broad.mit.edu 36 19 10126386 10126386 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130823 exon21 c.G1708C p.A570P . . . DNM2 1785 broad.mit.edu 36 19 10800809 10800809 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190716 exon19 c.G2156A p.R719Q . . . ZNF433 163059 broad.mit.edu 36 19 11988301 11988301 + Silent SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080411 exon4 c.T381C p.T127T . . . ZNF443 10224 broad.mit.edu 36 19 12402611 12402611 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005815 exon4 c.C1375T p.R459C . . . ZNF791 163049 broad.mit.edu 36 19 12599861 12599861 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153358 exon4 c.A518G p.Q173R . . . BEST2 54831 broad.mit.edu 36 19 12728087 12728087 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017682 exon8 c.C1081A p.Q361K . . . NACC1 112939 broad.mit.edu 36 19 13107460 13107460 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_052876 exon2 c.G439A p.V147M . . . MUM1 84939 broad.mit.edu 36 19 1311183 1311183 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032853 exon5 c.G266C p.R89T . . . MRI1 84245 broad.mit.edu 36 19 13740216 13740216 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032285 exon3 c.C415T p.Q139X . . . CC2D1A 54862 broad.mit.edu 36 19 13902080 13902080 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017721 exon28 c.G2813T p.R938M . . . ADAMTSL5 339366 broad.mit.edu 36 19 1458271 1458271 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_213604 exon9 c.C822T p.A274A . . . CCDC105 126402 broad.mit.edu 36 19 14982859 14982859 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173482 exon1 c.C222T p.R74R . . . SYDE1 85360 broad.mit.edu 36 19 15081792 15081792 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_033025 exon3 c.G708A p.P236P . . . RASAL3 64926 broad.mit.edu 36 19 15426692 15426692 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_022904 exon12 c.G1734A p.A578A . . . OR10H1 26539 broad.mit.edu 36 19 15779475 15779475 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013940 exon1 c.G373A p.A125T . . . HSH2D 84941 broad.mit.edu 36 19 16129144 16129144 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032855 exon8 c.G599A p.R200H . . . CHERP 10523 broad.mit.edu 36 19 16504558 16504558 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006387 exon5 c.C525T p.A175A . . . NWD1 284434 broad.mit.edu 36 19 16721311 16721311 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007525 exon6 c.G858A p.T286T . . . GTPBP3 84705 broad.mit.edu 36 19 17311378 17311378 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032620 exon7 c.A944T p.E315V . . . FAM129C 199786 broad.mit.edu 36 19 17518584 17518584 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_173544 exon14 c.C1737T p.C579C . . . UNC13A 23025 broad.mit.edu 36 19 17620346 17620346 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080421 exon15 c.C1710T p.C570C . . . MAP1S 55201 broad.mit.edu 36 19 17705226 17705226 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018174 exon6 c.C3013T p.R1005C . . . JAK3 3718 broad.mit.edu 36 19 17806419 17806419 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000215 exon17 c.C2311T p.R771X . . . JAK3 3718 broad.mit.edu 36 19 17808985 17808985 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000215 exon13 c.C1739T p.S580L . . . PIK3R2 5296 broad.mit.edu 36 19 18134019 18134019 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005027 exon8 c.G909A p.P303P . . . CILP2 148113 broad.mit.edu 36 19 19515875 19515875 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153221 exon8 c.C1521T p.G507G . . . ZNF98 148198 broad.mit.edu 36 19 22366309 22366309 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098626 exon4 c.G1568A p.C523Y . . . ZNF57 126295 broad.mit.edu 36 19 2868536 2868536 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173480 exon4 c.A917C p.K306T . . . NFIC 4782 broad.mit.edu 36 19 3332842 3332842 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005597 exon2 c.C163T p.R55C . . . CCNE1 898 broad.mit.edu 36 19 35006511 35006511 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057182 exon10 c.C1175T p.P392L . . . ANKRD27 84079 broad.mit.edu 36 19 37823068 37823068 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032139 exon11 c.C968T p.T323M . . . EEF2 1938 broad.mit.edu 36 19 3930966 3930966 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001961 exon10 c.C1445T p.T482M . . . ZBTB7A 51341 broad.mit.edu 36 19 3998941 3998941 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015898 exon3 c.G1564A p.A522T . . . APLP1 333 broad.mit.edu 36 19 41057489 41057489 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024807 exon10 c.C1222T p.R408C . . . LRFN3 79414 broad.mit.edu 36 19 41123424 41123424 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024509 exon2 c.G1257T p.K419N . . . ZNF382 84911 broad.mit.edu 36 19 41809652 41809652 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032825 exon5 c.C1013T p.A338V . . . FSD1 79187 broad.mit.edu 36 19 4257202 4257202 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024333 exon3 c.C119T p.S40L . . . RYR1 6261 broad.mit.edu 36 19 43767501 43767501 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042723 exon101 c.G14710A p.E4904K . . . FCGBP 8857 broad.mit.edu 36 19 45058265 45058265 + Silent SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003890 exon30 c.G13809T p.A4603A . . . FCGBP 8857 broad.mit.edu 36 19 45060318 45060318 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G A Unknown Valid Germline Phase_I Capture Illumina Illumina HiSeq NM_003890 exon28 c.C12870T p.P4290P . . . SPTBN4 57731 broad.mit.edu 36 19 45763231 45763231 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020971 exon28 c.C5978T p.A1993V . . . ADCK4 79934 broad.mit.edu 36 19 45889908 45889908 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024876 exon15 c.C1507T p.R503X . . . CCDC97 90324 broad.mit.edu 36 19 46514413 46514413 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052848 exon2 c.T331G p.F111V . . . CEACAM5 1048 broad.mit.edu 36 19 46916848 46916848 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004363 exon8 c.G1938A p.T646T . . . ERF 2077 broad.mit.edu 36 19 47445602 47445602 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006494 exon4 c.T502C p.S168P . . . CIC 23152 broad.mit.edu 36 19 47488684 47488684 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015125 exon14 c.C3302T p.A1101V . . . MEGF8 1954 broad.mit.edu 36 19 47532162 47532163 + Missense_Mutation DNP CG TA TA novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 CG CG Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001410 exon6 c.1068_1069TA . . . . LIPE 3991 broad.mit.edu 36 19 47606380 47606380 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005357 exon2 c.C1338T p.D446D . . . PSG3 5671 broad.mit.edu 36 19 47928959 47928959 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021016 exon3 c.G526A p.A176T . . . ZNF283 284349 broad.mit.edu 36 19 49044360 49044360 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181845 exon7 c.T1767C p.H589H . . . ZNF233 353355 broad.mit.edu 36 19 49462915 49462915 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181756 exon4 c.C199T p.R67W . . . ZFP112 7771 broad.mit.edu 36 19 49524445 49524445 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013380 exon4 c.C1705A p.H569N . . . CEACAM20 125931 broad.mit.edu 36 19 49716421 49716421 + Silent SNP C T T rs12982449 byCluster;byFrequency;byHapMap;by1000genomes TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102597 exon5 c.G957A p.T319T . . . CKM 1158 broad.mit.edu 36 19 50513057 50513057 + Missense_Mutation SNP C T T rs1803285 unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001824 exon3 c.G214A p.V72M . . . DMPK 1760 broad.mit.edu 36 19 50972497 50972497 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081563 exon7 c.C1104T p.F368F . . . HIF3A 64344 broad.mit.edu 36 19 51516888 51516888 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152795 exon10 c.G1160A p.R387Q . . . C5AR1 728 broad.mit.edu 36 19 52515196 52515196 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001736 exon2 c.G321A p.P107P . . . LIG1 3978 broad.mit.edu 36 19 53326235 53326235 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000234 exon19 c.C1731T p.H577H . . . SYNGR4 23546 broad.mit.edu 36 19 53560939 53560939 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012451 exon2 c.C28T p.L10L . . . GRIN2D 2906 broad.mit.edu 36 19 53616994 53616994 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000836 exon10 c.G2232A p.A744A . . . HSD17B14 51171 broad.mit.edu 36 19 54026806 54026806 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016246 exon5 c.G300T p.E100D . . . PPP1R15A 23645 broad.mit.edu 36 19 54069151 54069151 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014330 exon2 c.A849T p.E283D . . . TBC1D17 79735 broad.mit.edu 36 19 55079543 55079543 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168222 exon11 c.T1160C p.M387T . . . MYH14 79784 broad.mit.edu 36 19 55467034 55467034 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077186 exon25 c.C3189T p.D1063D . . . SYT3 84258 broad.mit.edu 36 19 55827519 55827519 + Silent SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032298 exon2 c.T510C p.A170A . . . SIGLEC9 27180 broad.mit.edu 36 19 56320858 56320858 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198558 exon2 c.A614G p.Q205R . . . LONP1 9361 broad.mit.edu 36 19 5643167 5643167 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004793 exon18 c.A2756T p.D919V . . . CLDND2 125875 broad.mit.edu 36 19 56563546 56563546 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152353 exon1 c.G98A p.R33H . . . OSCAR 126014 broad.mit.edu 36 19 59290887 59290887 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206818 exon5 c.G729A p.P243P . . . TFPT 29844 broad.mit.edu 36 19 59303181 59303181 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013342 exon5 c.A606G p.A202A . . . LENG8 114823 broad.mit.edu 36 19 59659221 59659221 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052925 exon9 c.G1289A p.R430H . . . KIR2DL1 3802 broad.mit.edu 36 19 59978472 59978472 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014218 exon4 c.G414A p.T138T . . . NLRP2 55655 broad.mit.edu 36 19 60186480 60186480 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174083 exon7 c.C1533T p.D511D . . . SYT5 6861 broad.mit.edu 36 19 60378968 60378968 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003180 exon5 c.C461T p.P154L . . . NAT14 57106 broad.mit.edu 36 19 60689759 60689759 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020378 exon3 c.G245A p.R82Q . . . NLRP13 126204 broad.mit.edu 36 19 61115208 61115208 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176810 exon5 c.T1787C p.I596T . . . NLRP8 126205 broad.mit.edu 36 19 61159041 61159041 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176811 exon3 c.C1805T p.P602L . . . ZNF835 90485 broad.mit.edu 36 19 61866784 61866784 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005850 exon2 c.G1661A p.R554H . . . ZNF304 57343 broad.mit.edu 36 19 62560391 62560391 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020657 exon3 c.G1342A p.V448M . . . ZNF419 79744 broad.mit.edu 36 19 62694671 62694671 + Silent SNP T C C rs62126198 unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T T T C Unknown Valid LOH Phase_I Capture Illumina Illumina HiSeq NM_001098494 exon3 c.T96C p.D32D . . . SLC25A23 79085 broad.mit.edu 36 19 6405624 6405624 + Silent SNP A C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024103 exon5 c.T588G p.G196G . . . C3 718 broad.mit.edu 36 19 6661725 6661725 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000064 exon13 c.G1611A p.L537L . . . EMR1 2015 broad.mit.edu 36 19 6848511 6848511 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G G G G Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001974 exon5 c.G467A p.S156N . . . ACTL9 284382 broad.mit.edu 36 19 8668853 8668853 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178525 exon1 c.G1199A p.R400Q . . . MUC16 94025 broad.mit.edu 36 19 8950904 8950904 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon1 c.C1911T p.S637S . . . TMEM149 79713 broad.mit.edu 36 19 40923764 40923764 + Splice_Site SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . SLC35A3 23443 broad.mit.edu 36 1 100231829 100231829 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012243 exon2 c.T131C p.V44A . . . KIF1B 23095 broad.mit.edu 36 1 10317232 10317232 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015074 exon26 c.G2854C p.E952Q . . . KIF1B 23095 broad.mit.edu 36 1 10357676 10357676 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015074 exon45 c.G5136A p.Q1712Q . . . CASZ1 54897 broad.mit.edu 36 1 10647999 10647999 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079843 exon5 c.G233A p.R78H . . . KIAA1324 57535 broad.mit.edu 36 1 109544970 109544970 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020775 exon21 c.C2898T p.G966G . . . MASP2 10747 broad.mit.edu 36 1 11010139 11010139 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006610 exon11 c.C1451T p.A484V . . . RBM15 64783 broad.mit.edu 36 1 110686213 110686213 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022768 exon1 c.T2663A p.L888H . . . KCNA10 3744 broad.mit.edu 36 1 110862674 110862674 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005549 exon1 c.C259T p.R87W . . . KCNA2 3737 broad.mit.edu 36 1 110947744 110947744 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004974 exon2 c.C1184T p.A395V . . . ADORA3 140 broad.mit.edu 36 1 111832937 111832937 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081976 exon3 c.G447A p.T149T . . . KCND3 3752 broad.mit.edu 36 1 112325796 112325796 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004980 exon2 c.G1076A p.W359X . . . MTOR 2475 broad.mit.edu 36 1 11241896 11241896 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004958 exon2 c.G158A p.R53Q . . . BCL2L15 440603 broad.mit.edu 36 1 114231463 114231463 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010922 exon1 c.A58G p.M20V . . . CD101 9398 broad.mit.edu 36 1 117362692 117362692 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004258 exon6 c.C2004T p.A668A . . . CLCN6 1185 broad.mit.edu 36 1 11818718 11818718 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001286 exon18 c.C1901T p.P634L . . . NPPB 4879 broad.mit.edu 36 1 11840994 11840994 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002521 exon2 c.C252T p.T84T . . . ADAM30 11085 broad.mit.edu 36 1 120238144 120238144 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021794 exon1 c.C2339T p.P780L . . . NOTCH2 4853 broad.mit.edu 36 1 120307724 120307724 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024408 exon11 c.G1911A p.T637T . . . GABPB2 126626 broad.mit.edu 36 1 149346169 149346169 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144618 exon7 c.G769A p.V257I . . . SCNM1 79005 broad.mit.edu 36 1 149408141 149408141 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024041 exon7 c.T649C p.F217L . . . THEM4 117145 broad.mit.edu 36 1 150134218 150134218 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053055 exon2 c.T176G p.L59R . . . FLG 2312 broad.mit.edu 36 1 150544655 150544655 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002016 exon3 c.C9331T p.R3111C . . . FLG2 388698 broad.mit.edu 36 1 150594037 150594037 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001014342 exon3 c.A2849G p.Q950R . . . KPRP 448834 broad.mit.edu 36 1 150999780 150999780 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001025231 exon2 c.C1092T p.G364G . . . IVL 3713 broad.mit.edu 36 1 151150156 151150156 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T G T G Unknown Valid Germline Phase_I Capture Illumina Illumina HiSeq NM_005547 exon2 c.T1259G p.V420G . . . HAX1 10456 broad.mit.edu 36 1 152514747 152514747 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018837 exon7 c.T642C p.D214D . . . ADAR 103 broad.mit.edu 36 1 152841067 152841067 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015841 exon2 c.G675A p.P225P . . . C1orf104 284618 broad.mit.edu 36 1 153557858 153557858 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039517 exon2 c.G46A p.E16K . . . GON4L 54856 broad.mit.edu 36 1 154003022 154003022 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032292 exon21 c.C2866A p.L956I . . . ARHGEF2 9181 broad.mit.edu 36 1 154186879 154186879 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001162383 exon21 c.C2722T p.R908C . . . CASP9 842 broad.mit.edu 36 1 15706033 15706033 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032996 exon4 c.G329A p.R110H . . . OR10J1 26476 broad.mit.edu 36 1 157677044 157677044 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012351 exon1 c.T872C p.I291T . . . PVRL4 81607 broad.mit.edu 36 1 159313989 159313989 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030916 exon3 c.C608T p.A203V . . . B4GALT3 8703 broad.mit.edu 36 1 159410318 159410318 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199874 exon5 c.G635A p.R212Q . . . DDR2 4921 broad.mit.edu 36 1 160991100 160991100 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T T T T Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_001014796 exon6 c.T248G p.L83R . . . POU2F1 5451 broad.mit.edu 36 1 165651638 165651638 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002697 exon16 c.G2268A p.A756A . . . F5 2153 broad.mit.edu 36 1 167776642 167776642 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000130 exon13 c.C4310T p.T1437I . . . MYOC 4653 broad.mit.edu 36 1 169872290 169872290 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000261 exon3 c.A913G p.S305G . . . METTL13 51603 broad.mit.edu 36 1 170032386 170032386 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014955 exon8 c.C1709T p.P570L . . . TNN 63923 broad.mit.edu 36 1 173334158 173334158 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022093 exon9 c.C1923A p.D641E . . . RFWD2 64326 broad.mit.edu 36 1 174279489 174279489 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022457 exon13 c.C1510T p.Q504X . . . FAM5B 57795 broad.mit.edu 36 1 175517059 175517059 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021165 exon8 c.T2124C p.Y708Y . . . FAM163A 148753 broad.mit.edu 36 1 178049547 178049547 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173509 exon5 c.G104A p.C35Y . . . PQLC2 54896 broad.mit.edu 36 1 19516864 19516864 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017765 exon3 c.G106A p.E36K . . . PTPRC 5788 broad.mit.edu 36 1 196964200 196964200 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080921 exon13 c.G1340A p.C447Y . . . CAMSAP1L1 23271 broad.mit.edu 36 1 199083017 199083017 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203459 exon9 c.G1166A p.R389H . . . CACNA1S 779 broad.mit.edu 36 1 199327855 199327855 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000069 exon4 c.G409A p.V137M . . . ARL8A 127829 broad.mit.edu 36 1 200374151 200374151 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138795 exon2 c.C172T p.R58C . . . KDM5B 10765 broad.mit.edu 36 1 200969303 200969303 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006618 exon23 c.G3758A p.R1253Q . . . PPFIA4 8497 broad.mit.edu 36 1 201296132 201296132 + Silent SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015053 exon9 c.A1230G p.S410S . . . CHI3L1 1116 broad.mit.edu 36 1 201416386 201416386 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001276 exon8 c.C729T p.Y243Y . . . NUAK2 81788 broad.mit.edu 36 1 203539383 203539383 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_030952 exon7 c.C1705T p.R569W . . . RAB7L1 8934 broad.mit.edu 36 1 204007366 204007366 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135662 exon4 c.C235T p.R79W . . . PM20D1 148811 broad.mit.edu 36 1 204079442 204079442 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152491 exon6 c.G803A p.G268D . . . DYRK3 8444 broad.mit.edu 36 1 204888425 204888425 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003582 exon3 c.G1259A p.C420Y . . . MAPKAPK2 9261 broad.mit.edu 36 1 204968758 204968758 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032960 exon2 c.C360T p.I120I . . . CD55 1604 broad.mit.edu 36 1 205571118 205571118 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000574 exon6 c.T707A p.I236N . . . DDOST 1650 broad.mit.edu 36 1 20851498 20851498 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005216 exon11 c.C1332T p.I444I . . . RCOR3 55758 broad.mit.edu 36 1 209553411 209553411 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136223 exon12 c.G1340A p.R447Q . . . CENPF 1063 broad.mit.edu 36 1 212895296 212895296 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016343 exon17 c.G8412A p.Q2804Q . . . USH2A 7399 broad.mit.edu 36 1 214174713 214174713 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon38 c.G7168A p.G2390R . . . USH2A 7399 broad.mit.edu 36 1 214662006 214662006 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon2 c.C296T p.A99V . . . HSPG2 3339 broad.mit.edu 36 1 22052007 22052007 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005529 exon51 c.C6583T p.R2195W . . . HSPG2 3339 broad.mit.edu 36 1 22075433 22075433 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005529 exon23 c.G2879A p.S960N . . . WDR26 80232 broad.mit.edu 36 1 222658852 222658852 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025160 exon8 c.C1202T p.A401V . . . ACBD3 64746 broad.mit.edu 36 1 224420279 224420279 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022735 exon2 c.A332G p.K111R . . . AGT 183 broad.mit.edu 36 1 228912913 228912913 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000029 exon2 c.G307A p.A103T . . . DISC1 27185 broad.mit.edu 36 1 230239186 230239186 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164540 exon11 c.G2185A p.E729K . . . C1orf31 388753 broad.mit.edu 36 1 232576692 232576692 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012985 exon2 c.C216T p.N72N . . . LYST 1130 broad.mit.edu 36 1 234017141 234017141 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000081 exon14 c.T4844C p.I1615T . . . KMO 8564 broad.mit.edu 36 1 239792118 239792118 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003679 exon7 c.T478C p.C160R . . . OPN3 23596 broad.mit.edu 36 1 239834452 239834452 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014322 exon2 c.C426T p.R142R . . . GALE 2582 broad.mit.edu 36 1 23997293 23997293 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000403 exon5 c.G252A p.A84A . . . SRSF10 10772 broad.mit.edu 36 1 24174141 24174141 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001191007 exon3 c.C184T p.R62C . . . ZNF238 10472 broad.mit.edu 36 1 242284186 242284186 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006352 exon1 c.G460A p.D154N . . . ZNF238 10472 broad.mit.edu 36 1 242284822 242284822 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006352 exon1 c.G1096A p.A366T . . . TRIM58 25893 broad.mit.edu 36 1 246106107 246106107 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015431 exon6 c.G1154T p.W385L . . . OR2M5 127059 broad.mit.edu 36 1 246375599 246375599 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004690 exon1 c.A527G p.H176R . . . OR2T6 254879 broad.mit.edu 36 1 246617983 246617983 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005471 exon1 c.G451A p.G151S . . . NIPAL3 57185 broad.mit.edu 36 1 24668079 24668079 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020448 exon12 c.C1038T p.H346H . . . SRRM1 10250 broad.mit.edu 36 1 24850518 24850518 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005839 exon6 c.C553T p.R185X . . . RHCE 6006 broad.mit.edu 36 1 25584851 25584851 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138617 exon5 c.G696A p.L232L . . . C1orf172 126695 broad.mit.edu 36 1 27150511 27150511 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152365 exon2 c.G948A p.S316S . . . MAP3K6 9064 broad.mit.edu 36 1 27557395 27557395 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004672 exon21 c.G2779A p.A927T . . . EYA3 2140 broad.mit.edu 36 1 28238002 28238002 + Silent SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001990 exon5 c.T159C p.I53I . . . SERINC2 347735 broad.mit.edu 36 1 31670195 31670195 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199039 exon4 c.T115C p.Y39H . . . TRIM62 55223 broad.mit.edu 36 1 33385874 33385874 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018207 exon5 c.C919T p.R307C . . . SFPQ 6421 broad.mit.edu 36 1 35427521 35427521 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005066 exon5 c.G1465A p.E489K . . . KIAA0319L 79932 broad.mit.edu 36 1 35688589 35688589 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024874 exon14 c.T2171C p.V724A . . . SCMH1 22955 broad.mit.edu 36 1 41266892 41266892 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172218 exon15 c.G1559A p.R520Q . . . HIVEP3 59269 broad.mit.edu 36 1 41763131 41763131 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024503 exon6 c.C5245T p.R1749C . . . FAM183A 440585 broad.mit.edu 36 1 43386287 43386287 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001101376 exon1 c.G78T p.K26N . . . MED8 112950 broad.mit.edu 36 1 43624366 43624366 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052877 exon6 c.G612T p.Q204H . . . KIAA0467 23334 broad.mit.edu 36 1 43675677 43675677 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015284 exon29 c.G3504A p.L1168L . . . PTPRF 5792 broad.mit.edu 36 1 43837012 43837012 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130440 exon13 c.G2154T p.E718D . . . KDM4A 9682 broad.mit.edu 36 1 43936163 43936163 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014663 exon19 c.C2733T p.N911N . . . HECTD3 79654 broad.mit.edu 36 1 45242152 45242152 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024602 exon19 c.C2391T p.R797R . . . POMGNT1 55624 broad.mit.edu 36 1 46432617 46432617 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017739 exon9 c.C795T p.R265R . . . ACOT7 11332 broad.mit.edu 36 1 6263817 6263817 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181864 exon8 c.G976A p.A326T . . . PGM1 5236 broad.mit.edu 36 1 63867774 63867774 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172818 exon2 c.A391G p.I131V . . . ZBTB48 3104 broad.mit.edu 36 1 6569394 6569394 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005341 exon5 c.G1097A p.R366Q . . . ASB17 127247 broad.mit.edu 36 1 76170175 76170175 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080868 exon1 c.A390G p.A130A . . . ELTD1 64123 broad.mit.edu 36 1 79129914 79129914 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022159 exon14 c.G1893T p.W631C . . . GTF2B 2959 broad.mit.edu 36 1 89095747 89095747 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001514 exon6 c.G547A p.V183I . . . H6PD 9563 broad.mit.edu 36 1 9244743 9244743 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004285 exon4 c.G784A p.D262N . . . DNTTIP2 30836 broad.mit.edu 36 1 94115805 94115805 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014597 exon2 c.T274C p.S92P . . . LPPR4 9890 broad.mit.edu 36 1 99502813 99502813 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014839 exon1 c.G220A p.E74K . . . CEPT1 10390 broad.mit.edu 36 1 111505359 111505359 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006090 exon4 c.547delT p.F183fs . . . PPP1R12B 4660 broad.mit.edu 36 1 200673813 200673813 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167857 exon10 c.1496delT p.V499fs . . . UBXN11 91544 broad.mit.edu 36 1 26481477 26481478 + Frame_Shift_Del DEL CC - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 CC CC CC - CC - Unknown Valid Germline Phase_I Capture Illumina Illumina HiSeq NM_001077262 exon11 c.1102_1103del p.368_368del . . . UBXN11 91544 broad.mit.edu 36 1 26481480 26481483 + Frame_Shift_Del DEL GGAC - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 GGAC GGAC GGAC - GGAC - Unknown Valid Germline Phase_I Capture Illumina Illumina HiSeq NM_001077262 exon11 c.1097_1100del p.366_367del . . . TESK2 10420 broad.mit.edu 36 1 45695855 45695855 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_007170 exon2 c.190delA p.I64X . . . CLSTN1 22883 broad.mit.edu 36 1 9732546 9732546 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014944 exon5 c.632delA p.N211fs . . . ZNF831 128611 broad.mit.edu 36 20 57202534 57202535 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_178457 exon1 c.3065_3066insG p.L1022fs . . . JAG1 182 broad.mit.edu 36 20 10569802 10569802 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000214 exon24 c.G3007A p.E1003K . . . JAG1 182 broad.mit.edu 36 20 10573566 10573566 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000214 exon18 c.C2289T p.G763G . . . VPS16 64601 broad.mit.edu 36 20 2793025 2793025 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080413 exon14 c.C1303T p.L435L . . . UBOX5 22888 broad.mit.edu 36 20 3050420 3050420 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014948 exon3 c.C865T p.L289L . . . DNMT3B 1789 broad.mit.edu 36 20 30838825 30838825 + Silent SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175848 exon6 c.C561A p.P187P . . . NECAB3 63941 broad.mit.edu 36 20 31711155 31711155 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_031232 exon8 c.C688T p.R230C . . . ITCH 83737 broad.mit.edu 36 20 32460217 32460217 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031483 exon4 c.G170A p.C57Y . . . MAP1LC3A 84557 broad.mit.edu 36 20 32611285 32611285 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181509 exon5 c.G300A p.A100A . . . ATRN 8455 broad.mit.edu 36 20 3523147 3523147 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139322 exon20 c.C3344T p.A1115V . . . ZHX3 23051 broad.mit.edu 36 20 39264629 39264629 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015035 exon3 c.A2342G p.Q781R . . . TTPAL 79183 broad.mit.edu 36 20 42542272 42542272 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039199 exon2 c.C219T p.S73S . . . RIMS4 140730 broad.mit.edu 36 20 42818349 42818349 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182970 exon6 c.G650C p.R217P . . . ZNF335 63925 broad.mit.edu 36 20 44029845 44029845 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022095 exon5 c.G749A p.C250Y . . . SLC12A5 57468 broad.mit.edu 36 20 44113877 44113877 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020708 exon18 c.C2338T p.R780C . . . NCOA5 57727 broad.mit.edu 36 20 44129123 44129123 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020967 exon5 c.A607G p.I203V . . . ZNFX1 57169 broad.mit.edu 36 20 47297257 47297257 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021035 exon14 c.C5711T p.T1904M . . . NFATC2 4773 broad.mit.edu 36 20 49573757 49573757 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_012340 exon2 c.G430A p.G144R . . . ZNF217 7764 broad.mit.edu 36 20 51631786 51631786 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006526 exon1 c.C987T p.S329S . . . LRRN4 164312 broad.mit.edu 36 20 5970424 5970424 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152611 exon5 c.G1467A p.S489S . . . DIDO1 11083 broad.mit.edu 36 20 61009149 61009149 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022105 exon5 c.A1169C p.E390A . . . KCNQ2 3785 broad.mit.edu 36 20 61521450 61521450 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172107 exon12 c.G1267T p.G423W . . . RTEL1 51750 broad.mit.edu 36 20 61761229 61761229 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016434 exon2 c.C30T p.T10T . . . SAMD10 140700 broad.mit.edu 36 20 62078804 62078804 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080621 exon3 c.G409A p.V137I . . . TCEA2 6919 broad.mit.edu 36 20 62168294 62168294 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198723 exon3 c.C13T p.R5W . . . DDX27 55661 broad.mit.edu 36 20 47291911 47291911 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017895 exon17 c.2065delA p.K689fs . . . ADAMTS1 9510 broad.mit.edu 36 21 27138555 27138555 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006988 exon1 c.C590T p.T197M . . . ADAMTS5 11096 broad.mit.edu 36 21 27259898 27259898 + Silent SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_007038 exon1 c.G684T p.P228P . . . USP16 10600 broad.mit.edu 36 21 29344299 29344299 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001992 exon16 c.C2119T p.R707C . . . SFRS15 57466 broad.mit.edu 36 21 31966391 31966391 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145444 exon19 c.G2591A p.R864H . . . PRDM15 63977 broad.mit.edu 36 21 42114523 42114523 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022115 exon23 c.C3127T p.R1043C . . . WDR4 10785 broad.mit.edu 36 21 43166840 43166840 + Silent SNP A T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033661 exon3 c.T186A p.G62G . . . CRYAA 1409 broad.mit.edu 36 21 43465258 43465258 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000394 exon3 c.C321T p.H107H . . . SIK1 150094 broad.mit.edu 36 21 43666073 43666073 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173354 exon5 c.C372T p.N124N . . . AGPAT3 56894 broad.mit.edu 36 21 44214984 44214984 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020132 exon6 c.C533T p.T178M . . . TRPM2 7226 broad.mit.edu 36 21 44679474 44679474 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003307 exon28 c.G4007A p.R1336H . . . ITGB2 3689 broad.mit.edu 36 21 45146013 45146013 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127491 exon6 c.G563A p.R188Q . . . ADARB1 104 broad.mit.edu 36 21 45420362 45420362 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015834 exon4 c.G318A p.A106A . . . SLC19A1 6573 broad.mit.edu 36 21 45775842 45775842 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194255 exon3 c.G838A p.G280S . . . NCAM2 4685 broad.mit.edu 36 21 21632603 21632603 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004540 exon8 c.922delA p.K308fs . . . GAB4 128954 broad.mit.edu 36 22 15853038 15853038 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037814 exon2 c.G203A p.R68Q . . . CECR2 27443 broad.mit.edu 36 22 16411734 16411734 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031413 exon17 c.C4232T p.S1411F . . . GSC2 2928 broad.mit.edu 36 22 17516533 17516533 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005315 exon3 c.G589A p.V197I . . . CLTCL1 8218 broad.mit.edu 36 22 17590287 17590287 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001835 exon15 c.C2338T p.R780C . . . SNAP29 9342 broad.mit.edu 36 22 19543406 19543406 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004782 exon1 c.C8T p.A3V . . . CRKL 1399 broad.mit.edu 36 22 19634066 19634066 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005207 exon3 c.G845A p.R282H . . . PRAME 23532 broad.mit.edu 36 22 21220514 21220514 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206955 exon6 c.T1505G p.L502R . . . PIWIL3 440822 broad.mit.edu 36 22 23450896 23450896 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008496 exon18 c.C2216T p.A739V . . . SGSM1 129049 broad.mit.edu 36 22 23638689 23638689 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098497 exon22 c.G2898A p.T966T . . . CRYBB1 1414 broad.mit.edu 36 22 25333954 25333954 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001887 exon4 c.G331A p.G111R . . . CRYBB1 1414 broad.mit.edu 36 22 25338105 25338105 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001887 exon3 c.C230T p.S77L . . . CRYBA4 1413 broad.mit.edu 36 22 25351570 25351570 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001886 exon4 c.G284A p.R95Q . . . ASCC2 84164 broad.mit.edu 36 22 28551101 28551101 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032204 exon4 c.G386A p.R129H . . . RFPL3 10738 broad.mit.edu 36 22 31086704 31086704 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006604 exon3 c.G752A p.R251H . . . LARGE 9215 broad.mit.edu 36 22 32030318 32030318 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133642 exon12 c.G1627A p.V543M . . . LARGE 9215 broad.mit.edu 36 22 32376575 32376575 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133642 exon3 c.C186T p.R62R . . . HMOX1 3162 broad.mit.edu 36 22 34112824 34112824 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002133 exon3 c.C291T p.Y97Y . . . RBFOX2 23543 broad.mit.edu 36 22 34470192 34470192 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014309 exon12 c.C1100T p.T367M . . . RBFOX2 23543 broad.mit.edu 36 22 34485972 34485972 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001082579 exon10 c.G1015A p.A339T . . . MYH9 4627 broad.mit.edu 36 22 35018016 35018016 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002473 exon31 c.G4306A p.A1436T . . . EIF3D 8664 broad.mit.edu 36 22 35249963 35249963 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003753 exon5 c.G317A p.R106H . . . MCHR1 2847 broad.mit.edu 36 22 39407123 39407123 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005297 exon2 c.C514T p.L172F . . . MCHR1 2847 broad.mit.edu 36 22 39407766 39407766 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005297 exon2 c.C1157T p.T386M . . . EP300 2033 broad.mit.edu 36 22 39886654 39886654 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001429 exon20 c.A3653G p.D1218G . . . PNPLA5 150379 broad.mit.edu 36 22 42614848 42614848 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_138814 exon5 c.G719C p.C240S . . . PARVB 29780 broad.mit.edu 36 22 42863692 42863692 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003828 exon8 c.A752G p.H251R . . . FBLN1 2192 broad.mit.edu 36 22 44325147 44325147 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006487 exon14 c.G1685A p.R562H . . . GTSE1 51512 broad.mit.edu 36 22 45103279 45103279 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016426 exon10 c.G1755A p.K585K . . . TBC1D22A 25771 broad.mit.edu 36 22 45686663 45686663 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014346 exon8 c.G930A p.A310A . . . SBF1 6305 broad.mit.edu 36 22 49232519 49232519 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002972 exon41 c.G5600A p.R1867H . . . MIOX 55586 broad.mit.edu 36 22 49272704 49272704 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017584 exon2 c.C40T p.R14X . . . APOBEC3D 140564 broad.mit.edu 36 22 37751131 37751131 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152426 exon3 c.321delC p.N107fs . . . CELSR1 9620 broad.mit.edu 36 22 45309860 45309860 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014246 exon1 c.1872delC p.P624fs . . . KLF11 8462 broad.mit.edu 36 2 10109940 10109940 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177718 exon4 c.G1343A p.R448H . . . IL18R1 8809 broad.mit.edu 36 2 102358886 102358886 + Missense_Mutation SNP G A A rs35292939 unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003855 exon4 c.G556A p.V186M . . . ANAPC1 64682 broad.mit.edu 36 2 112262282 112262282 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022662 exon39 c.G4799A p.R1600Q . . . STEAP3 55240 broad.mit.edu 36 2 119721800 119721800 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182915 exon4 c.G598A p.V200M . . . CNTNAP5 129684 broad.mit.edu 36 2 124978584 124978584 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130773 exon8 c.C1305T p.R435R . . . IWS1 55677 broad.mit.edu 36 2 127970089 127970089 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017969 exon7 c.C1671T p.D557D . . . UGGT1 56886 broad.mit.edu 36 2 128653908 128653908 + Silent SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020120 exon35 c.A3894G p.T1298T . . . CCNT2 905 broad.mit.edu 36 2 135427372 135427372 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058241 exon9 c.A877G p.T293A . . . FAM84A 151354 broad.mit.edu 36 2 14691763 14691763 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145175 exon2 c.G209A p.R70H . . . TPO 7173 broad.mit.edu 36 2 1499666 1499666 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175721 exon13 c.C2391T p.S797S . . . NEB 4703 broad.mit.edu 36 2 152091708 152091708 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon148 c.C21915T p.L7305L . . . STAM2 10254 broad.mit.edu 36 2 152685493 152685493 + Silent SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005843 exon14 c.T1419C p.G473G . . . TANC1 85461 broad.mit.edu 36 2 159751781 159751781 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033394 exon16 c.G2742A p.K914K . . . MARCH7 64844 broad.mit.edu 36 2 160307893 160307893 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022826 exon3 c.C229T p.R77C . . . PXDN 7837 broad.mit.edu 36 2 1631078 1631078 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012293 exon17 c.C3481T p.R1161W . . . SCN3A 6328 broad.mit.edu 36 2 165657054 165657054 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006922 exon27 c.G4763C p.G1588A . . . SCN3A 6328 broad.mit.edu 36 2 165705564 165705564 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006922 exon13 c.G1862A p.R621H . . . SCN2A 6326 broad.mit.edu 36 2 165954012 165954012 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040143 exon26 c.A5450G p.K1817R . . . TTC21B 79809 broad.mit.edu 36 2 166494932 166494932 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024753 exon9 c.A1083G p.L361L . . . SCN1A 6323 broad.mit.edu 36 2 166600846 166600846 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001165964 exon16 c.G3303A p.T1101T . . . XIRP2 129446 broad.mit.edu 36 2 167811283 167811283 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199144 exon7 c.A4469G p.D1490G . . . ABCB11 8647 broad.mit.edu 36 2 169538531 169538531 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003742 exon13 c.A1374G p.G458G . . . ABCB11 8647 broad.mit.edu 36 2 169561465 169561465 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003742 exon6 c.G403A p.E135K . . . LRP2 4036 broad.mit.edu 36 2 169805880 169805880 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004525 exon25 c.G3909T p.K1303N . . . TLK1 9874 broad.mit.edu 36 2 171725097 171725097 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012290 exon1 c.G88A p.A30T . . . DYNC1I2 1781 broad.mit.edu 36 2 172312601 172312601 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001378 exon18 c.C1873T p.R625X . . . SLC25A12 8604 broad.mit.edu 36 2 172374427 172374427 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003705 exon13 c.C1240T p.R414W . . . OLA1 29789 broad.mit.edu 36 2 174651980 174651980 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011708 exon9 c.G577A p.E193K . . . HOXD10 3236 broad.mit.edu 36 2 176689972 176689972 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002148 exon1 c.G165A p.P55P . . . TTN 7273 broad.mit.edu 36 2 179113100 179113100 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon179 c.C70843T p.L23615L . . . TTN 7273 broad.mit.edu 36 2 179120660 179120660 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon167 c.C66743T p.P22248L . . . TTN 7273 broad.mit.edu 36 2 179187506 179187506 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon89 c.G21785A p.G7262D . . . TTN 7273 broad.mit.edu 36 2 179202395 179202395 + Silent SNP T G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon68 c.A17107C p.R5703R . . . TTN 7273 broad.mit.edu 36 2 179206002 179206002 + Silent SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon62 c.T15906C p.I5302I . . . TTN 7273 broad.mit.edu 36 2 179324967 179324967 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133379 exon46 c.C10405T p.R3469C . . . COL5A2 1290 broad.mit.edu 36 2 189607129 189607129 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000393 exon54 c.G4412A p.R1471H . . . CCDC150 284992 broad.mit.edu 36 2 197219457 197219457 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080539 exon2 c.G160A p.D54N . . . AOX1 316 broad.mit.edu 36 2 201193719 201193719 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159 exon17 c.C1806T p.D602D . . . AOX1 316 broad.mit.edu 36 2 201214152 201214152 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159 exon24 c.C2655T p.F885F . . . CASP10 843 broad.mit.edu 36 2 201768880 201768880 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032974 exon5 c.C648T p.S216S . . . NDUFS1 4719 broad.mit.edu 36 2 206717925 206717925 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005006 exon9 c.G808A p.V270M . . . CRYGB 1419 broad.mit.edu 36 2 208718901 208718901 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005210 exon2 c.C94T p.R32C . . . C2orf80 389073 broad.mit.edu 36 2 208753765 208753765 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099334 exon6 c.A315G p.E105E . . . SMARCAL1 50485 broad.mit.edu 36 2 216988115 216988115 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014140 exon3 c.C443A p.A148D . . . CDK5R2 8941 broad.mit.edu 36 2 219533566 219533566 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003936 exon1 c.C780T p.A260A . . . CCDC108 255101 broad.mit.edu 36 2 219597057 219597057 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194302 exon15 c.G2519A p.C840Y . . . MOGAT1 116255 broad.mit.edu 36 2 223261484 223261484 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058165 exon2 c.A272G p.H91R . . . TRIP12 9320 broad.mit.edu 36 2 230409837 230409837 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004238 exon5 c.G1115A p.R372Q . . . SP110 3431 broad.mit.edu 36 2 230745119 230745119 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080424 exon16 c.C1722T p.C574C . . . ALPP 250 broad.mit.edu 36 2 232952862 232952862 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001632 exon5 c.C629T p.T210M . . . CHRND 1144 broad.mit.edu 36 2 233108112 233108112 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000751 exon12 c.G1400A p.R467H . . . GIGYF2 26058 broad.mit.edu 36 2 233418735 233418735 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001103148 exon25 c.G3337A p.E1113K . . . SAG 6295 broad.mit.edu 36 2 233894065 233894065 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000541 exon5 c.G232A p.V78M . . . SCLY 51540 broad.mit.edu 36 2 238671659 238671659 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016510 exon12 c.G1262A p.S421N . . . ANKMY1 51281 broad.mit.edu 36 2 241117254 241117254 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016552 exon4 c.C559T p.R187C . . . PPP1R7 5510 broad.mit.edu 36 2 241751378 241751378 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002712 exon7 c.C603T p.I201I . . . CENPO 79172 broad.mit.edu 36 2 24890812 24890812 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199803 exon3 c.T262C p.L88L . . . GPR113 165082 broad.mit.edu 36 2 26390218 26390218 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145169 exon7 c.C983T p.P328L . . . SLC30A3 7781 broad.mit.edu 36 2 27332759 27332759 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003459 exon7 c.C1017T p.I339I . . . TTC15 51112 broad.mit.edu 36 2 3370489 3370489 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016030 exon2 c.C88T p.L30F . . . NRXN1 9378 broad.mit.edu 36 2 50002817 50002817 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138735 exon6 c.G1098A p.T366T . . . OTX1 5013 broad.mit.edu 36 2 63136193 63136193 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199770 exon5 c.C303T p.S101S . . . ADD2 119 broad.mit.edu 36 2 70744314 70744314 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001185054 exon16 c.G1932A p.P644P . . . ATP6V1B1 525 broad.mit.edu 36 2 71016705 71016705 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001692 exon1 c.G113A p.R38H . . . PAIP2B 400961 broad.mit.edu 36 2 71283121 71283121 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020459 exon2 c.G107T p.W36L . . . DYSF 8291 broad.mit.edu 36 2 71679278 71679278 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130982 exon34 c.G3693T p.W1231C . . . ALMS1 7840 broad.mit.edu 36 2 73570376 73570376 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015120 exon10 c.T7779C p.H2593H . . . ALMS1 7840 broad.mit.edu 36 2 73681885 73681885 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015120 exon19 c.C11925T p.N3975N . . . SLC4A5 57835 broad.mit.edu 36 2 74322637 74322637 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021196 exon15 c.G2110A p.A704T . . . LOXL3 84695 broad.mit.edu 36 2 74617503 74617503 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032603 exon5 c.G753A p.T251T . . . C2orf3 6936 broad.mit.edu 36 2 75775006 75775006 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003203 exon6 c.G889A p.V297I . . . CTNNA2 1496 broad.mit.edu 36 2 79990332 79990332 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004389 exon7 c.C957T p.A319A . . . RETSAT 54884 broad.mit.edu 36 2 85426621 85426621 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017750 exon6 c.C1105T p.R369C . . . ASAP2 8853 broad.mit.edu 36 2 9432431 9432431 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135191 exon17 c.C1653T p.C551C . . . TEKT4 150483 broad.mit.edu 36 2 94903007 94903007 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144705 exon2 c.C514T p.R172W . . . B3GALT1 8708 broad.mit.edu 36 2 168434097 168434097 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020981 exon2 c.302delG p.W101fs . . . SGOL2 151246 broad.mit.edu 36 2 201145237 201145237 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001160046 exon7 c.1923delA p.L641fs . . . VIL1 7429 broad.mit.edu 36 2 219010092 219010094 + In_Frame_Del DEL TCT - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 TCT TCT Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_007127 exon17 c.1973_1975del p.658_659del . . . ZBED2 79413 broad.mit.edu 36 3 112795424 112795424 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024508 exon2 c.G315A p.M105I . . . C3orf52 79669 broad.mit.edu 36 3 113314582 113314582 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024616 exon5 c.T549C p.S183S . . . SYN2 6854 broad.mit.edu 36 3 12203986 12203986 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133625 exon13 c.C1484T p.S495L . . . STXBP5L 9515 broad.mit.edu 36 3 122483817 122483817 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014980 exon20 c.C2125T p.R709C . . . ADCY5 111 broad.mit.edu 36 3 124526965 124526965 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183357 exon8 c.G1982A p.R661H . . . TXNRD3IT1 645840 broad.mit.edu 36 3 127774009 127774009 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039783 exon3 c.A68C p.E23A . . . PLXND1 23129 broad.mit.edu 36 3 130758171 130758171 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015103 exon35 c.C5640T p.Y1880Y . . . CNTN6 27255 broad.mit.edu 36 3 1346596 1346596 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014461 exon11 c.G1341A p.T447T . . . CEP63 80254 broad.mit.edu 36 3 135748898 135748898 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025180 exon10 c.T961C p.Y321H . . . PPP2R3A 5523 broad.mit.edu 36 3 137279955 137279955 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181897 exon6 c.G738A p.S246S . . . CNTN6 27255 broad.mit.edu 36 3 1399991 1399991 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014461 exon19 c.C2416T p.P806S . . . CLSTN2 64084 broad.mit.edu 36 3 141650136 141650136 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022131 exon6 c.C873T p.A291A . . . TRPC1 7220 broad.mit.edu 36 3 143937976 143937976 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003304 exon2 c.G238A p.V80I . . . FGD5 152273 broad.mit.edu 36 3 14880705 14880705 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152536 exon2 c.G2592A p.S864S . . . SERP1 27230 broad.mit.edu 36 3 151744942 151744942 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014445 exon3 c.G194T p.G65V . . . SIAH2 6478 broad.mit.edu 36 3 151942710 151942710 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005067 exon2 c.G883A p.D295N . . . MED12L 116931 broad.mit.edu 36 3 152287430 152287430 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053002 exon1 c.T27C p.Y9Y . . . GFM1 85476 broad.mit.edu 36 3 159865856 159865856 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T G T G Unknown Valid Germline Phase_I Capture Illumina Illumina HiSeq NM_024996 exon12 c.T1417G p.F473V . . . SCHIP1 29970 broad.mit.edu 36 3 161088235 161088235 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001197108 exon4 c.G345T p.E115D . . . SMC4 10051 broad.mit.edu 36 3 161624001 161624001 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002800 exon14 c.G2114A p.R705H . . . SLITRK3 22865 broad.mit.edu 36 3 166389915 166389915 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014926 exon2 c.C1398T p.N466N . . . NCEH1 57552 broad.mit.edu 36 3 173834219 173834219 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146276 exon5 c.C1087T p.R363C . . . TBL1XR1 79718 broad.mit.edu 36 3 178250606 178250606 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024665 exon7 c.C575T p.T192I . . . PIK3CA 5290 broad.mit.edu 36 3 180434779 180434779 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006218 exon21 c.A3140G p.H1047R PIK3CA,breast,NS,Substitution - Missense,0 . . CCDC39 339829 broad.mit.edu 36 3 181847651 181847651 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181426 exon11 c.G1437A p.A479A . . . MCCC1 56922 broad.mit.edu 36 3 184222988 184222988 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020166 exon16 c.G1780T p.D594Y . . . MCF2L2 23101 broad.mit.edu 36 3 184393539 184393539 + Silent SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015078 exon27 c.T2958C p.N986N . . . ABCC5 10057 broad.mit.edu 36 3 185151971 185151971 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005688 exon20 c.A2896G p.T966A . . . AP2M1 1173 broad.mit.edu 36 3 185381451 185381451 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025205 exon5 c.C544T p.L182F . . . LSG1 55341 broad.mit.edu 36 3 195867575 195867575 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018385 exon5 c.G521T p.S174I . . . MUC4 4585 broad.mit.edu 36 3 197000142 197000142 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018406 exon2 c.G2704A p.A902T . . . RARB 5915 broad.mit.edu 36 3 25597059 25597059 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000965 exon5 c.C628T p.R210X . . . ZCWPW2 152098 broad.mit.edu 36 3 28451701 28451701 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040432 exon3 c.C429T p.G143G . . . OSBPL10 114884 broad.mit.edu 36 3 31896217 31896217 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017784 exon2 c.C391T p.L131L . . . CRBN 51185 broad.mit.edu 36 3 3191859 3191859 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173482 exon2 c.G159A p.P53P . . . GLB1 2720 broad.mit.edu 36 3 33074696 33074696 + Missense_Mutation SNP G A A rs72555366 unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000404 exon6 c.C622T p.R208C . . . PDCD6IP 10015 broad.mit.edu 36 3 33881780 33881780 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001162429 exon17 c.G2301A p.V767V . . . TRANK1 9881 broad.mit.edu 36 3 36846104 36846104 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014831 exon22 c.G8632A p.A2878T . . . EPM2AIP1 9852 broad.mit.edu 36 3 37008493 37008493 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014805 exon1 c.G1080A p.A360A . . . EPM2AIP1 9852 broad.mit.edu 36 3 37009071 37009071 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014805 exon1 c.C502T p.R168X . . . GOLGA4 2803 broad.mit.edu 36 3 37298574 37298574 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172713 exon4 c.G350A p.R117Q . . . SLC22A14 9389 broad.mit.edu 36 3 38324174 38324174 + Missense_Mutation SNP C T T rs1078846 byHapMap TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004803 exon3 c.C734T p.S245L . . . VIPR1 7433 broad.mit.edu 36 3 42535747 42535747 + Silent SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004624 exon3 c.C213A p.T71T . . . C3orf39 84892 broad.mit.edu 36 3 43096657 43096657 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032806 exon2 c.G1271A p.R424H . . . CCR9 10803 broad.mit.edu 36 3 45918181 45918181 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006641 exon2 c.C861T p.F287F . . . PRSS45 377047 broad.mit.edu 36 3 46758884 46758884 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199183 exon4 c.T647A p.L216Q . . . NBEAL2 23218 broad.mit.edu 36 3 47023606 47023606 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015175 exon46 c.G7181A p.R2394Q . . . CDC25A 993 broad.mit.edu 36 3 48184418 48184418 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001789 exon10 c.C951T p.S317S . . . COL7A1 1294 broad.mit.edu 36 3 48602102 48602102 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000094 exon16 c.G2104A p.V702I . . . COL7A1 1294 broad.mit.edu 36 3 48605591 48605591 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000094 exon5 c.C630T p.L210L . . . DAG1 1605 broad.mit.edu 36 3 49544656 49544656 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004393 exon3 c.G1708A p.V570M . . . RNF123 63891 broad.mit.edu 36 3 49710923 49710923 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022064 exon8 c.G530A p.R177H . . . IQCF3 401067 broad.mit.edu 36 3 51839540 51839540 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001085479 exon5 c.C148T p.R50C . . . TLR9 54106 broad.mit.edu 36 3 52230699 52230699 + Silent SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017442 exon2 c.T2673C p.L891L . . . DNAH1 25981 broad.mit.edu 36 3 52364035 52364035 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015512 exon21 c.A3617C p.N1206T . . . CHDH 55349 broad.mit.edu 36 3 53826928 53826928 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018397 exon9 c.A1701G p.A567A . . . DNAH12 201625 broad.mit.edu 36 3 57463137 57463137 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178504 exon10 c.C1196T p.A399V . . . FAM116A 201627 broad.mit.edu 36 3 57594072 57594072 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152678 exon15 c.G1313A p.R438H . . . SLMAP 7871 broad.mit.edu 36 3 57792206 57792206 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007159 exon2 c.G255A p.L85L . . . FLNB 2317 broad.mit.edu 36 3 58067541 58067541 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164317 exon12 c.C1842T p.G614G . . . FLNB 2317 broad.mit.edu 36 3 58087457 58087457 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164317 exon24 c.A4150G p.S1384G . . . DNASE1L3 1776 broad.mit.edu 36 3 58165577 58165577 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004944 exon6 c.C392A p.S131Y . . . OR5H14 403273 broad.mit.edu 36 3 99351227 99351227 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005514 exon1 c.C308T p.S103L . . . NR1I2 8856 broad.mit.edu 36 3 121014350 121014350 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003889 exon5 c.647delG p.R216fs . . . MECOM 2122 broad.mit.edu 36 3 170315951 170315951 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105077 exon8 c.2034delA p.K678fs . . . ZNF619 285267 broad.mit.edu 36 3 40504664 40504664 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145083 exon4 c.1527delT p.H509fs . . . CCDC66 285331 broad.mit.edu 36 3 56572843 56572843 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001141947 exon4 c.194delA p.E65fs . . . C3orf67 200844 broad.mit.edu 36 3 58824595 58824596 + Frame_Shift_Del DEL AG - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 AG AG Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198463 exon12 c.946_947del p.316_316del . . . ARL13B 200894 broad.mit.edu 36 3 95238137 95238137 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001174150 exon5 c.538delA p.K180fs . . . C4orf45 152940 broad.mit.edu 36 4 160175638 160175639 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152543 exon1 c.61_62insT p.T21fs . . . CFI 3426 broad.mit.edu 36 4 110883196 110883196 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000204 exon12 c.C1434T p.N478N . . . ANK2 287 broad.mit.edu 36 4 114497752 114497752 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001148 exon38 c.C8529A p.S2843R . . . SETD7 80854 broad.mit.edu 36 4 140673797 140673797 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030648 exon3 c.G344A p.R115H . . . UCP1 7350 broad.mit.edu 36 4 141709277 141709277 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_021833 exon1 c.A57G p.S19S . . . RNF150 57484 broad.mit.edu 36 4 142273117 142273117 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020724 exon1 c.G296A p.R99H . . . FAM198B 51313 broad.mit.edu 36 4 159311412 159311412 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128424 exon2 c.G566A p.R189Q . . . NEK1 4750 broad.mit.edu 36 4 170582360 170582360 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199400 exon28 c.G2925A p.S975S . . . ADAM29 11086 broad.mit.edu 36 4 176134449 176134449 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130705 exon3 c.T1198A p.C400S . . . DCTD 1635 broad.mit.edu 36 4 184073074 184073074 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001921 exon3 c.G240A p.P80P . . . SORBS2 8470 broad.mit.edu 36 4 186782071 186782071 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021069 exon13 c.G1494A p.T498T . . . SORBS2 8470 broad.mit.edu 36 4 186815595 186815595 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145672 exon6 c.G451A p.G151R . . . CYP4V2 285440 broad.mit.edu 36 4 187367354 187367354 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207352 exon10 c.G1339A p.E447K . . . POLN 353497 broad.mit.edu 36 4 2142213 2142213 + Silent SNP T A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181808 exon11 c.A1545T p.S515S . . . ZCCHC4 29063 broad.mit.edu 36 4 24975844 24975844 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024936 exon12 c.G1364A p.R455H . . . GABRA2 2555 broad.mit.edu 36 4 45947260 45947260 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000807 exon10 c.C1178T p.T393M . . . ZAR1 326340 broad.mit.edu 36 4 48187068 48187068 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175619 exon1 c.G3A p.M1I . . . PPAT 5471 broad.mit.edu 36 4 56964228 56964228 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002703 exon4 c.C499A p.P167T . . . EVC 2121 broad.mit.edu 36 4 5771920 5771920 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153717 exon2 c.G219A p.A73A . . . JAKMIP1 152789 broad.mit.edu 36 4 6137562 6137562 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144720 exon5 c.G866A p.R289Q . . . UGT2B11 10720 broad.mit.edu 36 4 70112997 70112997 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001073 exon2 c.A753G p.G251G . . . TBC1D14 57533 broad.mit.edu 36 4 7046930 7046930 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001113361 exon4 c.C962T p.A321V . . . ADAMTS3 9508 broad.mit.edu 36 4 73424197 73424197 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014243 exon5 c.C739T p.R247C . . . ANKRD17 26057 broad.mit.edu 36 4 74176749 74176749 + Silent SNP T G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198889 exon28 c.A4707C p.S1569S . . . CXCL11 6373 broad.mit.edu 36 4 77176143 77176143 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005409 exon1 c.A22G p.I8V . . . SORCS2 57537 broad.mit.edu 36 4 7781056 7781056 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020777 exon22 c.C2949T p.D983D . . . HELQ 113510 broad.mit.edu 36 4 84594018 84594018 + Silent SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133636 exon2 c.T402C p.P134P . . . ZNF330 27309 broad.mit.edu 36 4 142362982 142362982 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014487 exon2 c.7delA p.K3fs . . . GRK4 2868 broad.mit.edu 36 4 2985353 2985356 + Splice_Site DEL AGTA - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 AGTA AGTA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182982 exon8 c.741_741del p.247_247del . . . THAP9 79725 broad.mit.edu 36 4 84045073 84045073 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024672 exon2 c.241delA p.K81fs . . . KCNN2 3781 broad.mit.edu 36 5 113727582 113727582 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021614 exon2 c.C567T p.H189H . . . CTNND2 1501 broad.mit.edu 36 5 11438070 11438070 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001332 exon7 c.C884T p.P295L . . . ALDH7A1 501 broad.mit.edu 36 5 125922924 125922924 + Silent SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001182 exon11 c.C915A p.A305A . . . MEGF10 84466 broad.mit.edu 36 5 126811231 126811231 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032446 exon22 c.A2812C p.T938P . . . P4HA2 8974 broad.mit.edu 36 5 131574030 131574030 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017974 exon6 c.G555A p.T185T . . . HSPA4 3308 broad.mit.edu 36 5 132453162 132453162 + Silent SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002154 exon11 c.A1254G p.E418E . . . SKP1 6500 broad.mit.edu 36 5 133522090 133522090 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170679 exon5 c.G411T p.K137N . . . PHF15 23338 broad.mit.edu 36 5 133924468 133924468 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015288 exon6 c.C606T p.C202C . . . SPOCK1 6695 broad.mit.edu 36 5 136504199 136504199 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004598 exon4 c.C316A p.L106M . . . HNRNPA0 10949 broad.mit.edu 36 5 137116830 137116830 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006805 exon1 c.C825T p.G275G . . . EGR1 1958 broad.mit.edu 36 5 137830487 137830487 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001964 exon2 c.G450A p.W150X . . . HSPA9 3313 broad.mit.edu 36 5 137923574 137923574 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004134 exon11 c.G1288A p.G430S . . . PCDHB3 56132 broad.mit.edu 36 5 140460955 140460955 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018937 exon1 c.G538A p.V180I . . . PCDHB4 56131 broad.mit.edu 36 5 140483395 140483395 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018938 exon1 c.C1631T p.A544V . . . PCDHB12 56124 broad.mit.edu 36 5 140568846 140568846 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018932 exon1 c.G183A p.S61S . . . PCDHB12 56124 broad.mit.edu 36 5 140570293 140570293 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018932 exon1 c.G1630A p.E544K . . . PCDHGA9 56107 broad.mit.edu 36 5 140764613 140764613 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018921 exon1 c.C1910T p.A637V . . . PCDHGC4 56098 broad.mit.edu 36 5 140845610 140845610 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032406 exon1 c.G686A p.R229Q . . . PCDH12 51294 broad.mit.edu 36 5 141305510 141305510 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016580 exon4 c.G3175T p.A1059S . . . PCDH12 51294 broad.mit.edu 36 5 141315717 141315717 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016580 exon1 c.G1884A p.S628S . . . RNF14 9604 broad.mit.edu 36 5 141333429 141333429 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183401 exon3 c.T92C p.V31A . . . SPRY4 81848 broad.mit.edu 36 5 141674623 141674623 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030964 exon3 c.G304A p.A102T . . . PPP2R2B 5521 broad.mit.edu 36 5 145960196 145960196 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127381 exon8 c.C811T p.P271S . . . FBXL7 23194 broad.mit.edu 36 5 15989591 15989591 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012304 exon4 c.C772T p.R258W . . . MYO10 4651 broad.mit.edu 36 5 16752596 16752596 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012334 exon26 c.C3519T p.V1173V . . . ODZ2 57451 broad.mit.edu 36 5 167578303 167578303 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122679 exon23 c.C4802T p.T1601I . . . ODZ2 57451 broad.mit.edu 36 5 167585736 167585736 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122679 exon24 c.G5147A p.R1716Q . . . RANBP17 64901 broad.mit.edu 36 5 170269287 170269287 + Silent SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022897 exon6 c.C534A p.T178T . . . UBTD2 92181 broad.mit.edu 36 5 171571770 171571770 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152277 exon3 c.C374T p.P125L . . . NSD1 64324 broad.mit.edu 36 5 176570828 176570828 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022455 exon5 c.G2822A p.R941H . . . RGS14 10636 broad.mit.edu 36 5 176727109 176727109 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006480 exon6 c.G572A p.R191H . . . ZNF354C 30832 broad.mit.edu 36 5 178438333 178438333 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014594 exon5 c.G294T p.Q98H . . . MGAT1 4245 broad.mit.edu 36 5 180151658 180151658 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002406 exon2 c.A920C p.E307A . . . CDH6 1004 broad.mit.edu 36 5 31358821 31358821 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004932 exon12 c.C2022T p.I674I . . . ADAMTS12 81792 broad.mit.edu 36 5 33612200 33612200 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030955 exon19 c.G3688A p.E1230K . . . ADAMTS12 81792 broad.mit.edu 36 5 33917058 33917058 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030955 exon2 c.C412A p.L138I . . . RAI14 26064 broad.mit.edu 36 5 34846958 34846958 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145522 exon8 c.A535G p.N179D . . . RAD1 5810 broad.mit.edu 36 5 34950565 34950565 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A A A A Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_002853 exon2 c.T190C p.F64L . . . LMBRD2 92255 broad.mit.edu 36 5 36139939 36139939 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007527 exon18 c.C2054T p.S685L . . . NIPBL 25836 broad.mit.edu 36 5 37099724 37099724 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015384 exon46 c.C7936T p.R2646W . . . PRKAA1 5562 broad.mit.edu 36 5 40800835 40800835 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006251 exon7 c.C1084A p.L362I . . . C7 730 broad.mit.edu 36 5 41017341 41017341 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000587 exon18 c.C2441T p.T814M . . . MGC42105 167359 broad.mit.edu 36 5 43313111 43313111 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153361 exon3 c.G488T p.S163I . . . MAP3K1 4214 broad.mit.edu 36 5 56214108 56214108 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005921 exon14 c.T3324C p.S1108S . . . ACTBL2 345651 broad.mit.edu 36 5 56813899 56813899 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017992 exon1 c.A393G p.P131P . . . IPO11 51194 broad.mit.edu 36 5 61846992 61846992 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134779 exon20 c.T1923C p.C641C . . . MAST4 375449 broad.mit.edu 36 5 66432149 66432149 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015183 exon7 c.C476T p.P159L . . . RASGRF2 5924 broad.mit.edu 36 5 80511836 80511836 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006909 exon18 c.T2773C p.W925R . . . GPR98 84059 broad.mit.edu 36 5 89984064 89984064 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032119 exon19 c.A3562G p.I1188V . . . BRD9 65980 broad.mit.edu 36 5 934237 934237 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_023924 exon9 c.G1027A p.E343K . . . ANKRD32 84250 broad.mit.edu 36 5 94040368 94040368 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032290 exon15 c.C1927T p.R643X . . . TFAP2A 7020 broad.mit.edu 36 6 10508767 10508767 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003220 exon6 c.G925A p.E309K . . . POPDC3 64208 broad.mit.edu 36 6 105716145 105716145 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022361 exon2 c.G333A p.L111L . . . PREP 5550 broad.mit.edu 36 6 105832805 105832805 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002726 exon15 c.C2040T p.H680H . . . GCNT2 2651 broad.mit.edu 36 6 10694548 10694548 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145655 exon1 c.T340C p.F114L . . . SCML4 256380 broad.mit.edu 36 6 108148767 108148767 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198081 exon6 c.G806A p.C269Y . . . SEC63 11231 broad.mit.edu 36 6 108336824 108336824 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007214 exon8 c.C733T p.R245C . . . REV3L 5980 broad.mit.edu 36 6 111741262 111741262 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002912 exon28 c.C8590A p.P2864T . . . NEDD9 4739 broad.mit.edu 36 6 11299142 11299142 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006403 exon5 c.G946A p.A316T . . . C6orf174 387104 broad.mit.edu 36 6 127838842 127838842 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012279 exon6 c.G2022A p.T674T . . . C6orf174 387104 broad.mit.edu 36 6 127877877 127877877 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012279 exon3 c.C1110T p.I370I . . . THEMIS 387357 broad.mit.edu 36 6 128082652 128082652 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010923 exon5 c.G1768A p.V590I . . . ARHGAP18 93663 broad.mit.edu 36 6 129970811 129970811 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033515 exon9 c.G1202A p.S401N . . . C6orf192 116843 broad.mit.edu 36 6 133133116 133133116 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052831 exon14 c.C1357T p.P453S . . . FAM54A 113115 broad.mit.edu 36 6 136602297 136602297 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138419 exon6 c.G869A p.R290Q . . . IFNGR1 3459 broad.mit.edu 36 6 137561210 137561210 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000416 exon7 c.T1121G p.I374R . . . HECA 51696 broad.mit.edu 36 6 139529966 139529966 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016217 exon2 c.G1124A p.G375D . . . HIVEP2 3097 broad.mit.edu 36 6 143136971 143136971 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006734 exon5 c.A598G p.K200E . . . UTRN 7402 broad.mit.edu 36 6 144784765 144784765 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007124 exon3 c.T200C p.L67S . . . LATS1 9113 broad.mit.edu 36 6 150043167 150043167 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004690 exon5 c.A2130G p.T710T . . . FNDC1 84624 broad.mit.edu 36 6 159575339 159575339 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032532 exon11 c.G3805A p.V1269M . . . SLC22A3 6581 broad.mit.edu 36 6 160792065 160792065 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021977 exon11 c.G1658A p.R553H . . . ATXN1 6310 broad.mit.edu 36 6 16435971 16435971 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000332 exon8 c.A550G p.M184V . . . UNC93A 54346 broad.mit.edu 36 6 167641354 167641354 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143947 exon6 c.C948T p.G316G . . . TTLL2 83887 broad.mit.edu 36 6 167673986 167673986 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031949 exon3 c.G608A p.G203D . . . CDKAL1 54901 broad.mit.edu 36 6 20654668 20654668 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017774 exon3 c.G108A p.P36P . . . NRSN1 140767 broad.mit.edu 36 6 24242667 24242667 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080723 exon3 c.G133T p.E45X . . . SLC17A4 10050 broad.mit.edu 36 6 25870222 25870222 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005495 exon2 c.G53A p.G18D . . . SLC17A3 10786 broad.mit.edu 36 6 25953678 25953678 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098486 exon12 c.G1408A p.V470I . . . HIST1H4G 8369 broad.mit.edu 36 6 26355142 26355142 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003547 exon1 c.G43A p.G15S . . . OR2J3 442186 broad.mit.edu 36 6 29188318 29188318 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005216 exon1 c.C672T p.I224I . . . GABBR1 2550 broad.mit.edu 36 6 29679417 29679417 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021904 exon22 c.G2582A p.R861H . . . HLA-F 3134 broad.mit.edu 36 6 29800178 29800178 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018950 exon3 c.A584G p.N195S . . . TRIM40 135644 broad.mit.edu 36 6 30223527 30223527 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138700 exon5 c.G649A p.G217R . . . TRIM15 89870 broad.mit.edu 36 6 30247733 30247733 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033229 exon7 c.G1026A p.P342P . . . TRIM39 56658 broad.mit.edu 36 6 30405377 30405377 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199119 exon1 c.C304T p.R102W . . . BPHL 670 broad.mit.edu 36 6 3082599 3082599 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004332 exon5 c.C537T p.I179I . . . POU5F1 5460 broad.mit.edu 36 6 31246302 31246302 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002701 exon1 c.G75A p.P25P . . . TNXB 7148 broad.mit.edu 36 6 32125300 32125300 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019105 exon28 c.C9476T p.P3159L . . . TAP2 6891 broad.mit.edu 36 6 32906057 32906057 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018833 exon9 c.A1600G p.I534V . . . PSMB9 5698 broad.mit.edu 36 6 32933056 32933056 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002800 exon3 c.C167T p.P56L . . . VPS52 6293 broad.mit.edu 36 6 33326676 33326676 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022553 exon20 c.C2092T p.R698X . . . PPARD 5467 broad.mit.edu 36 6 35501591 35501591 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171818 exon9 c.G1083A p.R361R . . . ZFAND3 60685 broad.mit.edu 36 6 38137378 38137378 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021943 exon3 c.C144T p.S48S . . . GLP1R 2740 broad.mit.edu 36 6 39132215 39132215 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002062 exon2 c.G143A p.R48H . . . PRICKLE4 29964 broad.mit.edu 36 6 41862767 41862767 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013397 exon8 c.T1077C p.L359L . . . SLC22A7 10864 broad.mit.edu 36 6 43377317 43377317 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006672 exon6 c.G964A p.A322T . . . CAPN11 11131 broad.mit.edu 36 6 44252707 44252707 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007058 exon11 c.C1231A p.H411N . . . SLC35B2 347734 broad.mit.edu 36 6 44331024 44331024 + Silent SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178148 exon4 c.G696T p.R232R . . . GCLC 2729 broad.mit.edu 36 6 53482006 53482006 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001498 exon7 c.T755C p.V252A . . . SSR1 6745 broad.mit.edu 36 6 7255175 7255175 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003144 exon2 c.G166C p.V56L . . . COL12A1 1303 broad.mit.edu 36 6 75912613 75912613 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004370 exon24 c.G4485A p.Q1495Q . . . MYO6 4646 broad.mit.edu 36 6 76595032 76595032 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004999 exon4 c.T243C p.Y81Y . . . CYB5R4 51167 broad.mit.edu 36 6 84707006 84707006 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016230 exon14 c.G1313A p.S438N . . . TBX18 9096 broad.mit.edu 36 6 85514429 85514429 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080508 exon5 c.C867T p.S289S . . . ZNF292 23036 broad.mit.edu 36 6 88021648 88021648 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015021 exon8 c.G1582T p.G528X . . . MDN1 23195 broad.mit.edu 36 6 90444124 90444124 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014611 exon76 c.G12425A p.R4142H . . . MDN1 23195 broad.mit.edu 36 6 90520594 90520594 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014611 exon21 c.C2893T p.R965W . . . C6orf15 29113 broad.mit.edu 36 6 31187246 31187246 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014070 exon2 c.869delC p.P290fs . . . LRFN2 57497 broad.mit.edu 36 6 40507655 40507655 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020737 exon2 c.1176delC p.P392fs . . . ACTL6B 51412 broad.mit.edu 36 7 100090578 100090578 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016188 exon4 c.G369A p.P123P . . . EPHB4 2050 broad.mit.edu 36 7 100255154 100255154 + Missense_Mutation SNP C T T rs61735975 unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004444 exon6 c.G1258A p.V420I . . . MLL5 55904 broad.mit.edu 36 7 104489908 104489908 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182931 exon4 c.T133C p.L45L . . . PIK3CG 5294 broad.mit.edu 36 7 106296062 106296062 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002649 exon2 c.G820A p.V274I . . . LAMB4 22798 broad.mit.edu 36 7 107475729 107475729 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007356 exon28 c.G4186T p.G1396C . . . IMMP2L 83943 broad.mit.edu 36 7 110090922 110090922 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032549 exon6 c.G500A p.R167H . . . IMMP2L 83943 broad.mit.edu 36 7 110390834 110390834 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032549 exon4 c.A263C p.K88T . . . GPR85 54329 broad.mit.edu 36 7 112511024 112511024 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146267 exon3 c.C989T p.A330V . . . CADPS2 93664 broad.mit.edu 36 7 122090762 122090762 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167940 exon3 c.G551A p.R184H . . . FSCN3 29999 broad.mit.edu 36 7 127023629 127023629 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020369 exon3 c.C853T p.R285C . . . SND1 27044 broad.mit.edu 36 7 127130520 127130520 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014390 exon7 c.A747T p.K249N . . . C7orf68 29923 broad.mit.edu 36 7 127884663 127884663 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098786 exon2 c.G105A p.S35S . . . SMO 6608 broad.mit.edu 36 7 128635873 128635873 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005631 exon7 c.C1302T p.P434P . . . CPA4 51200 broad.mit.edu 36 7 129735393 129735393 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163446 exon7 c.G614A p.W205X . . . TBXAS1 6916 broad.mit.edu 36 7 139175674 139175674 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001061 exon1 c.T19C p.F7L . . . BRAF 673 broad.mit.edu 36 7 140099605 140099605 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004333 exon15 c.T1799A p.V600E BRAF,pituitary,NS,Substitution - Missense,0 . . PRSS1 5644 broad.mit.edu 36 7 142139373 142139373 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002769 exon3 c.C375T p.T125T . . . EPHB6 2051 broad.mit.edu 36 7 142273933 142273933 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004445 exon9 c.A1199G p.D400G . . . OR2F2 135948 broad.mit.edu 36 7 143263487 143263487 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004685 exon1 c.G229A p.V77I . . . ZNF786 136051 broad.mit.edu 36 7 148398591 148398591 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152411 exon4 c.G2206A p.D736N . . . GIMAP8 155038 broad.mit.edu 36 7 149795011 149795011 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175571 exon2 c.C292T p.L98F . . . NOS3 4846 broad.mit.edu 36 7 150341795 150341795 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000603 exon26 c.C3306T p.R1102R . . . PAXIP1 22976 broad.mit.edu 36 7 154383575 154383575 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007349 exon12 c.C2395T p.P799S . . . HTR5A 3361 broad.mit.edu 36 7 154493996 154493996 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024012 exon1 c.C454T p.R152C . . . OSBPL3 26031 broad.mit.edu 36 7 24810544 24810544 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145321 exon21 c.C2374T p.Q792X . . . HOXA7 3204 broad.mit.edu 36 7 27161267 27161267 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006896 exon2 c.G479A p.R160H . . . TRIL 9865 broad.mit.edu 36 7 28963867 28963867 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014817 exon1 c.G321A p.S107S . . . RP9 6100 broad.mit.edu 36 7 33105474 33105474 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203288 exon3 c.C283T p.P95S . . . GPR141 353345 broad.mit.edu 36 7 37747218 37747218 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181791 exon1 c.T698C p.V233A . . . SFRP4 6424 broad.mit.edu 36 7 37922617 37922617 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003014 exon1 c.G48A p.A16A . . . SDK1 221935 broad.mit.edu 36 7 4136130 4136130 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152744 exon27 c.C4004T p.T1335M . . . SDK1 221935 broad.mit.edu 36 7 4164698 4164698 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152744 exon31 c.C4718T p.T1573M . . . SDK1 221935 broad.mit.edu 36 7 4227494 4227494 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152744 exon40 c.G5799A p.T1933T . . . HECW1 23072 broad.mit.edu 36 7 43556712 43556712 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015052 exon27 c.C4392T p.Y1464Y . . . C7orf44 55744 broad.mit.edu 36 7 43653729 43653729 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018224 exon3 c.G45A p.L15L . . . NPC1L1 29881 broad.mit.edu 36 7 44545636 44545636 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013389 exon2 c.C885T p.F295F . . . TBRG4 9238 broad.mit.edu 36 7 45111831 45111831 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199122 exon3 c.G469T p.G157C . . . MMD2 221938 broad.mit.edu 36 7 4922204 4922204 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198403 exon4 c.G323A p.R108Q . . . RNF216 54476 broad.mit.edu 36 7 5747317 5747317 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C C C C Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_207116 exon4 c.G686C p.G229A . . . PMS2 5395 broad.mit.edu 36 7 5996108 5996108 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000535 exon10 c.C993T p.C331C . . . USP42 84132 broad.mit.edu 36 7 6163089 6163089 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032172 exon16 c.A3820G p.R1274G . . . ZNF273 10793 broad.mit.edu 36 7 64015452 64015452 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021148 exon2 c.T161C p.L54P . . . AUTS2 26053 broad.mit.edu 36 7 68702781 68702781 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015570 exon1 c.G206A p.R69Q . . . AUTS2 26053 broad.mit.edu 36 7 69893030 69893030 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015570 exon19 c.G2892A p.P964P . . . ABHD11 83451 broad.mit.edu 36 7 72788903 72788903 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148912 exon6 c.G870A p.T290T . . . LIMK1 3984 broad.mit.edu 36 7 73151332 73151332 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002314 exon5 c.G436A p.V146I . . . ZP3 7784 broad.mit.edu 36 7 75900883 75900883 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007155 exon5 c.C543T p.T181T . . . GRM3 2913 broad.mit.edu 36 7 86306795 86306795 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000840 exon4 c.G2029A p.A677T . . . SUN1 23353 broad.mit.edu 36 7 872182 872182 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130965 exon16 c.T1932C p.F644F . . . C7orf63 79846 broad.mit.edu 36 7 89755513 89755513 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160138 exon15 c.C1632T p.I544I . . . AKAP9 10142 broad.mit.edu 36 7 91546389 91546389 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147185 exon31 c.A6982G p.S2328G . . . CYP51A1 1595 broad.mit.edu 36 7 91599109 91599109 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000786 exon2 c.A206G p.Y69C . . . COL1A2 1278 broad.mit.edu 36 7 93862299 93862299 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000089 exon1 c.C20T p.T7M . . . DYNC1I1 1780 broad.mit.edu 36 7 95495497 95495497 + Silent SNP T A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004411 exon11 c.T1095A p.I365I . . . ZNF394 84124 broad.mit.edu 36 7 98934276 98934276 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032164 exon2 c.G582A p.P194P . . . STAG3 10734 broad.mit.edu 36 7 99637881 99637881 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012447 exon24 c.C2545T p.P849S . . . ADAM7 8756 broad.mit.edu 36 8 24405307 24405308 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003817 exon14 c.1358_1359insA p.I453fs . . . PKHD1L1 93035 broad.mit.edu 36 8 110603642 110603642 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177531 exon74 c.C12083T p.A4028V . . . TRPS1 7227 broad.mit.edu 36 8 116668652 116668652 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014112 exon5 c.G2451A p.P817P . . . ENPP2 5168 broad.mit.edu 36 8 120682837 120682837 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130863 exon10 c.A880G p.T294A . . . TAF2 6873 broad.mit.edu 36 8 120864939 120864939 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003184 exon16 c.G1975A p.V659I . . . PTK2 5747 broad.mit.edu 36 8 141738760 141738760 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199649 exon33 c.C3185T p.T1062M . . . PTK2 5747 broad.mit.edu 36 8 141780200 141780200 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199649 exon26 c.G2471A p.R824H . . . SLC45A4 57210 broad.mit.edu 36 8 142307513 142307513 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080431 exon1 c.G35A p.R12H . . . LY6E 4061 broad.mit.edu 36 8 144174577 144174577 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002346 exon4 c.C392A p.P131H . . . GPAA1 8733 broad.mit.edu 36 8 145211701 145211701 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003801 exon8 c.C1099T p.R367C . . . SLC18A1 6570 broad.mit.edu 36 8 20080920 20080920 + Silent SNP G C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003053 exon3 c.C480G p.L160L . . . MYOM2 9172 broad.mit.edu 36 8 2034210 2034210 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003970 exon19 c.G2430A p.M810I . . . EGR3 1960 broad.mit.edu 36 8 22604638 22604638 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004430 exon2 c.C457A p.L153I . . . STC1 6781 broad.mit.edu 36 8 23758369 23758369 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003155 exon4 c.C603A p.H201Q . . . ADAM28 10863 broad.mit.edu 36 8 24255095 24255095 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014265 exon16 c.G1710A p.S570S . . . DOCK5 80005 broad.mit.edu 36 8 25321459 25321459 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024940 exon49 c.G5137A p.A1713T . . . DPYSL2 1808 broad.mit.edu 36 8 26548324 26548324 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001386 exon8 c.C802T p.R268W . . . CHRNA2 1135 broad.mit.edu 36 8 27376624 27376624 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000742 exon6 c.A1253T p.E418V . . . TEX15 56154 broad.mit.edu 36 8 30820494 30820494 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031271 exon1 c.T5582C p.M1861T . . . KCNU1 157855 broad.mit.edu 36 8 36764008 36764008 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031836 exon2 c.T222C p.A74A . . . SFRP1 6422 broad.mit.edu 36 8 41285419 41285419 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003012 exon1 c.G417A p.S139S . . . PRKDC 5591 broad.mit.edu 36 8 48901827 48901827 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081640 exon63 c.G8725A p.E2909K . . . PXDNL 137902 broad.mit.edu 36 8 52483970 52483970 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144651 exon17 c.G2767C p.G923R . . . RGS20 8601 broad.mit.edu 36 8 54954406 54954406 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170587 exon2 c.C201T p.A67A . . . RP1 6101 broad.mit.edu 36 8 55703323 55703323 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006269 exon4 c.G4328A p.R1443Q . . . CHD7 55636 broad.mit.edu 36 8 61817676 61817676 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017780 exon2 c.C1131T p.N377N . . . SGK223 157285 broad.mit.edu 36 8 8271191 8271191 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080826 exon2 c.C2138A p.P713H . . . ZNF462 58499 broad.mit.edu 36 9 108731553 108731553 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021224 exon3 c.C5539T p.R1847C . . . C9orf4 23732 broad.mit.edu 36 9 110943646 110943646 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014334 exon4 c.G660T p.R220S . . . MUSK 4593 broad.mit.edu 36 9 112570062 112570062 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005592 exon8 c.G1062A p.T354T . . . SUSD1 64420 broad.mit.edu 36 9 113880725 113880725 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022486 exon12 c.T1667C p.L556P . . . PRPF4 9128 broad.mit.edu 36 9 115093082 115093082 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004697 exon13 c.C1340T p.A447V . . . TNC 3371 broad.mit.edu 36 9 116878650 116878650 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002160 exon8 c.A2700G p.R900R . . . ASTN2 23245 broad.mit.edu 36 9 118841986 118841986 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014010 exon5 c.C1203T p.G401G . . . CDK5RAP2 55755 broad.mit.edu 36 9 122239608 122239608 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018249 exon25 c.G3741A p.Q1247Q . . . C5 727 broad.mit.edu 36 9 122823769 122823769 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001735 exon11 c.C1141T p.Q381X . . . OR1L3 26735 broad.mit.edu 36 9 124477838 124477838 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005234 exon1 c.G609A p.G203G . . . GOLGA1 2800 broad.mit.edu 36 9 126714096 126714096 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002077 exon11 c.G874A p.V292I . . . CIZ1 25792 broad.mit.edu 36 9 129979772 129979772 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001131015 exon11 c.G1544A p.R515H . . . TOR1A 1861 broad.mit.edu 36 9 131616080 131616080 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000113 exon5 c.G991A p.D331N . . . PRDM12 59335 broad.mit.edu 36 9 132533491 132533491 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021619 exon3 c.C540T p.I180I . . . SETX 23064 broad.mit.edu 36 9 134195153 134195153 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015046 exon10 c.G1653A p.Q551Q . . . REXO4 57109 broad.mit.edu 36 9 135267295 135267295 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020385 exon4 c.C855T p.P285P . . . TMEM8C 389827 broad.mit.edu 36 9 135373957 135373957 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080483 exon3 c.G259A p.D87N . . . COL5A1 1289 broad.mit.edu 36 9 136844157 136844157 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000093 exon47 c.C3732T p.D1244D . . . CARD9 64170 broad.mit.edu 36 9 138384030 138384030 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052813 exon7 c.G1070A p.R357Q . . . SEC16A 9919 broad.mit.edu 36 9 138489998 138489998 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014866 exon3 c.G1891A p.V631M . . . FREM1 158326 broad.mit.edu 36 9 14832415 14832415 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144966 exon10 c.G1637T p.R546L . . . ADAMTSL1 92949 broad.mit.edu 36 9 18523267 18523267 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052866 exon3 c.C214T p.R72X . . . CCL21 6366 broad.mit.edu 36 9 34699818 34699818 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002989 exon2 c.C144T p.Y48Y . . . NPR2 4882 broad.mit.edu 36 9 35796091 35796091 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003995 exon15 c.C2233T p.R745W . . . FBXO10 26267 broad.mit.edu 36 9 37512822 37512822 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012166 exon7 c.G1930A p.A644T . . . MCART1 92014 broad.mit.edu 36 9 37878004 37878004 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033412 exon3 c.C544T p.R182W . . . SMC5 23137 broad.mit.edu 36 9 72085583 72085583 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015110 exon6 c.G767A p.R256Q . . . TMEM2 23670 broad.mit.edu 36 9 73539630 73539630 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013390 exon6 c.C1305T p.V435V . . . C9orf95 54981 broad.mit.edu 36 9 76866303 76866303 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017881 exon9 c.G581A p.C194Y . . . VPS13A 23230 broad.mit.edu 36 9 79123278 79123278 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018037 exon40 c.G5147A p.G1716D . . . GNA14 9630 broad.mit.edu 36 9 79236121 79236121 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004297 exon4 c.C529T p.R177C . . . C9orf64 84267 broad.mit.edu 36 9 85760927 85760927 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032307 exon1 c.C309T p.C103C . . . C9orf170 401535 broad.mit.edu 36 9 88953474 88953474 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001709 exon1 c.C9T p.S3S . . . C9orf79 286234 broad.mit.edu 36 9 89690797 89690797 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178828 exon4 c.C1575T p.A525A . . . DMRT1 1761 broad.mit.edu 36 9 906764 906764 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T T T T Unknown Wildtype None Phase_I Capture Illumina Illumina HiSeq NM_021951 exon4 c.T824C p.M275T . . . SECISBP2 79048 broad.mit.edu 36 9 91124506 91124506 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024077 exon2 c.G156A p.P52P . . . SEMA4D 10507 broad.mit.edu 36 9 91196018 91196018 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142287 exon11 c.G755A p.R252Q . . . FAM120A 23196 broad.mit.edu 36 9 95331599 95331599 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014612 exon9 c.C1650T p.P550P . . . TRIM14 9830 broad.mit.edu 36 9 99894030 99894030 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014788 exon5 c.C775T p.R259X . . . WWC3 55841 broad.mit.edu 36 X 10066864 10066864 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015691 exon21 c.G2972A p.R991H . . . ZMAT1 84460 broad.mit.edu 36 X 101028336 101028336 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011657 exon6 c.T529C p.C177R . . . FAM199X 139231 broad.mit.edu 36 X 103298227 103298227 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207318 exon1 c.C105T p.S35S . . . FAM199X 139231 broad.mit.edu 36 X 103317451 103317451 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207318 exon3 c.A466G p.I156V . . . ESX1 80712 broad.mit.edu 36 X 103382103 103382103 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153448 exon4 c.C683T p.A228V . . . GUCY2F 2986 broad.mit.edu 36 X 108538963 108538963 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001522 exon9 c.C1882T p.R628X . . . KIAA1210 57481 broad.mit.edu 36 X 118107439 118107439 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020721 exon11 c.G1782T p.M594I . . . C1GALT1C1 29071 broad.mit.edu 36 X 119644157 119644157 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152692 exon3 c.C893T p.A298V . . . GLUD2 2747 broad.mit.edu 36 X 120010485 120010485 + Silent SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012084 exon1 c.T1266C p.I422I . . . THOC2 57187 broad.mit.edu 36 X 122575595 122575595 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081550 exon34 c.G4438C p.E1480Q . . . XPNPEP2 7512 broad.mit.edu 36 X 128706918 128706918 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003399 exon4 c.C293T p.S98F . . . USP26 83844 broad.mit.edu 36 X 131987719 131987719 + Silent SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031907 exon1 c.C2196T p.F732F . . . GPC4 2239 broad.mit.edu 36 X 132267756 132267756 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001448 exon5 c.A970G p.M324V . . . FAM127A 8933 broad.mit.edu 36 X 133994363 133994363 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001078171 exon1 c.G284A p.R95Q . . . SAGE1 55511 broad.mit.edu 36 X 134816275 134816275 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018666 exon7 c.A635G p.E212G . . . ZIC3 7547 broad.mit.edu 36 X 136476584 136476584 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003413 exon1 c.G68A p.R23H . . . IDS 3423 broad.mit.edu 36 X 148387737 148387737 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006123 exon5 c.C514T p.R172X . . . GABRQ 55879 broad.mit.edu 36 X 151570810 151570810 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018558 exon8 c.G1067A p.R356Q . . . GABRQ 55879 broad.mit.edu 36 X 151572027 151572027 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018558 exon9 c.G1526A p.R509H . . . NSDHL 50814 broad.mit.edu 36 X 151788083 151788083 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001129765 exon9 c.T889G p.Y297D . . . ZNF275 10838 broad.mit.edu 36 X 152265733 152265733 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080485 exon4 c.C396T p.G132G . . . ZNF275 10838 broad.mit.edu 36 X 152265896 152265896 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080485 exon4 c.G559A p.G187R . . . ATP2B3 492 broad.mit.edu 36 X 152479530 152479530 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021949 exon17 c.C3042T p.F1014F . . . ATP2B3 492 broad.mit.edu 36 X 152483671 152483671 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021949 exon19 c.C3258T p.G1086G . . . BCAP31 10134 broad.mit.edu 36 X 152622713 152622713 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001139457 exon5 c.G573A p.S191S . . . ABCD1 215 broad.mit.edu 36 X 152658785 152658785 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000033 exon6 c.G1534A p.G512S . . . IDH3G 3421 broad.mit.edu 36 X 152706164 152706164 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004135 exon8 c.C623T p.A208V . . . RENBP 5973 broad.mit.edu 36 X 152863018 152863018 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002910 exon2 c.T74C p.V25A . . . BEND2 139105 broad.mit.edu 36 X 18123396 18123396 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153346 exon7 c.C1121T p.S374L . . . SH3KBP1 30011 broad.mit.edu 36 X 19516694 19516694 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024666 exon11 c.T1175C p.L392P . . . RPS6KA3 6197 broad.mit.edu 36 X 20091004 20091004 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004586 exon19 c.G1840A p.G614S . . . PTCHD1 139411 broad.mit.edu 36 X 23321225 23321225 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173495 exon3 c.G1669T p.G557W . . . CASK 8573 broad.mit.edu 36 X 41313888 41313888 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001126054 exon16 c.A1559G p.H520R . . . EFHC2 80258 broad.mit.edu 36 X 44005462 44005462 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025184 exon4 c.A409T p.T137S . . . CFP 5199 broad.mit.edu 36 X 47371502 47371502 + Missense_Mutation SNP C T T rs8177077 unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002621 exon6 c.G748A p.G250S . . . EBP 10682 broad.mit.edu 36 X 48271607 48271607 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006579 exon5 c.C511T p.R171C . . . WAS 7454 broad.mit.edu 36 X 48429122 48429122 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000377 exon4 c.C416T p.A139V . . . GRIPAP1 56850 broad.mit.edu 36 X 48740629 48740629 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020137 exon3 c.G136A p.A46T . . . PRAF2 11230 broad.mit.edu 36 X 48817082 48817082 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007213 exon2 c.G351A p.A117A . . . CCDC22 28952 broad.mit.edu 36 X 48985432 48985432 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014008 exon3 c.G235A p.G79S . . . CLCN5 1184 broad.mit.edu 36 X 49742259 49742259 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127899 exon14 c.G2336A p.R779Q . . . SHROOM4 57477 broad.mit.edu 36 X 50394043 50394043 + Silent SNP G T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020717 exon4 c.C1770A p.T590T . . . GPR173 54328 broad.mit.edu 36 X 53123438 53123438 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018969 exon2 c.G910A p.V304M . . . IQSEC2 23096 broad.mit.edu 36 X 53289375 53289375 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001111125 exon9 c.T2753C p.V918A . . . SMC1A 8243 broad.mit.edu 36 X 53448788 53448788 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006306 exon13 c.C2077T p.R693W . . . TRO 7216 broad.mit.edu 36 X 54973099 54973099 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039705 exon12 c.G3217A p.V1073I . . . STS 412 broad.mit.edu 36 X 7187531 7187531 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000351 exon5 c.C539T p.T180M . . . SLC16A2 6567 broad.mit.edu 36 X 73660995 73660995 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006517 exon3 c.G874A p.V292I . . . KIAA2022 340533 broad.mit.edu 36 X 73878011 73878011 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008537 exon3 c.A3106G p.I1036V . . . TBX22 50945 broad.mit.edu 36 X 79168900 79168900 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001109878 exon6 c.C675T p.H225H . . . PCDH11X 27328 broad.mit.edu 36 X 90977250 90977250 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032968 exon1 c.C91T p.R31X . . . GPR143 4935 broad.mit.edu 36 X 9688808 9688808 + Silent SNP C T T novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000273 exon2 c.G309A p.S103S . . . FLNA 2316 broad.mit.edu 36 X 153246786 153246786 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3877-01A-01W-0995-10 TCGA-AA-3877-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001456 exon11 c.1603delG p.D535fs . . .