Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
HPSE2	60495	broad.mit.edu	36	10	100209326	100209326	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166245	exon10	c.C1438T	p.R480X	.	.	.
PTCHD3	374308	broad.mit.edu	36	10	27742219	27742219	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001034842	exon1	c.C967T	p.R323W	.	.	.
SAMD8	142891	broad.mit.edu	36	10	76580301	76580301	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001174156	exon2	c.T9G	p.G3G	.	.	.
YIF1A	10897	broad.mit.edu	36	11	65811921	65811922	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020470	exon3	c.286_287insT	p.A96fs	.	.	.
CARD18	59082	broad.mit.edu	36	11	104514952	104514953	+	Missense_Mutation	DNP	GC	TT	TT	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021571	exon2	c.70_71AA	.	.	.	.
GRIA4	2893	broad.mit.edu	36	11	105238035	105238035	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001077244	exon5	c.A563T	p.N188I	.	.	.
NCAM1	4684	broad.mit.edu	36	11	112583858	112583858	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001076682	exon7	c.C841T	p.R281X	.	.	.
ARNTL	406	broad.mit.edu	36	11	13336585	13336585	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001030273	exon8	c.C121T	p.R41C	.	.	.
FAM111A	63901	broad.mit.edu	36	11	58676716	58676716	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001142521	exon5	c.G999A	p.T333T	.	.	.
STX5	6811	broad.mit.edu	36	11	62348289	62348289	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003164	exon10	c.C833T	p.S278L	.	.	.
CHST11	50515	broad.mit.edu	36	12	103675321	103675321	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001173982	exon3	c.C654T	p.N218N	.	.	.
KIF21A	55605	broad.mit.edu	36	12	37991615	37991615	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001173465	exon28	c.A3808C	p.I1270L	.	.	.
ARID2	196528	broad.mit.edu	36	12	44572125	44572125	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152641	exon18	c.G5126A	p.G1709E	.	.	.
TSFM	10102	broad.mit.edu	36	12	56466268	56466268	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001172695	exon3	c.A287G	p.K96R	.	.	.
NR1H4	9971	broad.mit.edu	36	12	99428955	99428955	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005123	exon4	c.G348A	p.A116A	 NR1H4,skin,NS,Substitution - coding silent,0 	.	.
SACS	26278	broad.mit.edu	36	13	22811826	22811826	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014363	exon10	c.G4189A	p.E1397K	.	.	.
FAM123A	219287	broad.mit.edu	36	13	24642590	24642590	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152704	exon1	c.G1168A	p.E390K	.	.	.
UGGT2	55757	broad.mit.edu	36	13	95328096	95328096	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020121	exon28	c.A3244T	p.T1082S	.	.	.
MIA2	117153	broad.mit.edu	36	14	38775943	38775943	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_054024	exon2	c.C182T	p.T61I	.	.	.
KCNH5	27133	broad.mit.edu	36	14	62244916	62244916	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_139318	exon11	c.G2030A	p.R677H	.	.	.
MAP2K1	5604	broad.mit.edu	36	15	64514495	64514495	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002755	exon2	c.T157C	p.F53L	.	.	.
RASGRF1	5923	broad.mit.edu	36	15	77169873	77169873	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002891	exon1	c.A23G	p.N8S	.	.	.
ADAMTS17	170691	broad.mit.edu	36	15	98411667	98411667	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_139057	exon16	c.G2253T	p.K751N	.	.	.
ADCY9	115	broad.mit.edu	36	16	3956924	3956924	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001116	exon11	c.G2915A	p.R972Q	.	.	.
MNT	4335	broad.mit.edu	36	17	2237094	2237094	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020310	exon6	c.G1600T	p.G534C	.	.	.
SOST	50964	broad.mit.edu	36	17	39191542	39191542	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_025237	exon1	c.G94T	p.D32Y	.	.	.
ZMYND15	84225	broad.mit.edu	36	17	4595293	4595293	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032265	exon12	c.G1814C	p.S605T	.	.	.
ABCA5	23461	broad.mit.edu	36	17	64781775	64781775	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_172232	exon20	c.T2684G	p.L895R	.	.	.
MED31	51003	broad.mit.edu	36	17	6488552	6488552	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016060	exon4	c.T355A	p.L119M	.	.	.
TP53	7157	broad.mit.edu	36	17	7520441	7520441	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon3	c.80delC	p.P27fs	.	.	.
MRPL4	51073	broad.mit.edu	36	19	10229918	10229918	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_146388	exon6	c.C466T	p.R156W	.	.	.
NPHS1	4868	broad.mit.edu	36	19	41031001	41031001	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004646	exon10	c.G1309A	p.V437I	.	.	.
LTBP4	8425	broad.mit.edu	36	19	45809890	45809890	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001042545	exon15	c.T2251G	p.C751G	.	.	.
AKT1S1	84335	broad.mit.edu	36	19	55068214	55068214	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001098632	exon2	c.C151T	p.R51X	.	.	.
LILRB4	11006	broad.mit.edu	36	19	59869107	59869107	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006847	exon7	c.G787A	p.G263R	.	.	.
ZNF121	7675	broad.mit.edu	36	19	9538403	9538403	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001008727	exon4	c.C386A	p.T129K	.	.	.
VAV3	10451	broad.mit.edu	36	1	108032546	108032546	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006113	exon18	c.G1711A	p.G571R	.	.	.
MTOR	2475	broad.mit.edu	36	1	11216097	11216097	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004958	exon15	c.A2366T	p.D789V	.	.	.
OAZ3	51686	broad.mit.edu	36	1	150009350	150009350	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016178	exon4	c.C559T	p.R187X	.	.	.
NTRK1	4914	broad.mit.edu	36	1	155116416	155116416	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012331	exon15	c.T2030G	p.V677G	.	.	.
ARHGAP30	257106	broad.mit.edu	36	1	159288114	159288114	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181720	exon10	c.T1034G	p.V345G	.	.	.
ASPM	259266	broad.mit.edu	36	1	195364414	195364414	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018136	exon10	c.G2765A	p.S922N	.	.	.
PPP1R12B	4660	broad.mit.edu	36	1	200662925	200662925	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001167857	exon5	c.G836A	p.R279Q	.	.	.
EIF4G3	8672	broad.mit.edu	36	1	21140740	21140740	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003760	exon9	c.G1326A	p.P442P	.	.	.
ARID1A	8289	broad.mit.edu	36	1	26930440	26930440	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006015	exon3	c.C1561T	p.Q521X	.	.	.
GRIK3	2899	broad.mit.edu	36	1	37044337	37044337	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000831	exon14	c.G2269A	p.G757R	.	.	.
RPE65	6121	broad.mit.edu	36	1	68669791	68669791	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000329	exon11	c.C1194T	p.D398D	.	.	.
KDM4A	9682	broad.mit.edu	36	1	43930549	43930551	+	In_Frame_Del	DEL	GCA	-	-	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	GCA	GCA	GCA	GCA	GCA	GCA	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014663	exon16	c.2355_2357del	p.785_786del	.	.	.
C20orf141	128653	broad.mit.edu	36	20	2744351	2744351	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080739	exon2	c.C428T	p.P143L	.	.	.
DSCAM	1826	broad.mit.edu	36	21	40631904	40631904	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001389	exon8	c.G1777A	p.V593M	.	.	.
KRTAP10-6	386674	broad.mit.edu	36	21	44836192	44836192	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198688	exon1	c.C602T	p.T201I	.	.	.
CELSR1	9620	broad.mit.edu	36	22	45168775	45168775	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014246	exon14	c.A5892C	p.G1964G	.	.	.
FAM49A	81553	broad.mit.edu	36	2	16605812	16605812	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_030797	exon9	c.A637C	p.T213P	.	.	.
TTN	7273	broad.mit.edu	36	2	179115659	179115659	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003319	exon176	c.G69972T	p.Q23324H	.	.	.
ERBB4	2066	broad.mit.edu	36	2	211956764	211956764	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005235	exon28	c.C3748A	p.R1250R	.	.	.
CXCR1	3577	broad.mit.edu	36	2	218738135	218738135	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000634	exon2	c.A45G	p.L15L	.	.	.
USP34	9736	broad.mit.edu	36	2	61289558	61289558	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014709	exon70	c.G8899A	p.G2967R	.	.	.
ZNF80	7634	broad.mit.edu	36	3	115438030	115438030	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007136	exon1	c.C582T	p.C194C	.	.	.
IQSEC1	9922	broad.mit.edu	36	3	12958257	12958257	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014869	exon2	c.C174T	p.Y58Y	.	.	.
PLXND1	23129	broad.mit.edu	36	3	130761957	130761957	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015103	exon31	c.C5039T	p.T1680M	.	.	.
FAM194A	131831	broad.mit.edu	36	3	151881378	151881378	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152394	exon8	c.G912A	p.L304L	.	.	.
AADACL2	344752	broad.mit.edu	36	3	152957816	152957816	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207365	exon5	c.C950T	p.A317V	.	.	.
LRRC3B	116135	broad.mit.edu	36	3	26726476	26726476	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052953	exon2	c.C309T	p.I103I	.	.	.
XIRP1	165904	broad.mit.edu	36	3	39203273	39203273	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_194293	exon2	c.G2668A	p.V890M	.	.	.
MYRIP	25924	broad.mit.edu	36	3	40206832	40206832	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015460	exon10	c.G1539A	p.P513P	.	.	.
SYNPO2	171024	broad.mit.edu	36	4	120170576	120170576	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133477	exon4	c.C1198T	p.R400X	.	.	.
GABRA2	2555	broad.mit.edu	36	4	46085420	46085420	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000807	exon2	c.G61T	p.D21Y	.	.	.
FER	2241	broad.mit.edu	36	5	108235758	108235758	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005246	exon8	c.T869A	p.L290H	.	.	.
FAT2	2196	broad.mit.edu	36	5	150900327	150900327	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001447	exon10	c.T9033G	p.C3011W	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32109977	32109977	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178140	exon17	c.G3008A	p.R1003H	.	.	.
TAS2R1	50834	broad.mit.edu	36	5	9682977	9682977	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019599	exon1	c.T168A	p.I56I	.	.	.
RANBP3L	202151	broad.mit.edu	36	5	36285531	36285534	+	Frame_Shift_Del	DEL	CTGT	-	-	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	CTGT	CTGT	CTGT	-	CTGT	CTGT	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_145000	exon14	c.1377_1380del	p.459_460del	.	.	.
PTPRK	5796	broad.mit.edu	36	6	128446606	128446606	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002844	exon9	c.T1522G	p.F508V	.	.	.
FAM54A	113115	broad.mit.edu	36	6	136607648	136607648	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138419	exon3	c.G116A	p.R39H	.	.	.
BCLAF1	9774	broad.mit.edu	36	6	136624135	136624135	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014739	exon12	c.A2718C	p.E906D	.	.	.
TIAM2	26230	broad.mit.edu	36	6	155511119	155511119	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012454	exon6	c.G1987A	p.V663M	.	.	.
SLC17A4	10050	broad.mit.edu	36	6	25877213	25877213	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005495	exon3	c.G113A	p.G38E	.	.	.
ABT1	29777	broad.mit.edu	36	6	26706572	26706572	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013375	exon3	c.G539A	p.R180H	.	.	.
OR10C1	442194	broad.mit.edu	36	6	29515989	29515989	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_013941	exon1	c.C218T	p.T73M	.	.	.
MUC21	394263	broad.mit.edu	36	6	31062448	31062448	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001010909	exon2	c.A517C	p.T173P	.	.	.
BAT4	7918	broad.mit.edu	36	6	31739699	31739699	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001199237	exon3	c.A536G	p.D179G	.	.	.
CFB	629	broad.mit.edu	36	6	32024601	32024601	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001710	exon8	c.C1052T	p.S351L	.	.	.
IP6K3	117283	broad.mit.edu	36	6	33801291	33801291	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_054111	exon5	c.G670A	p.G224S	.	.	.
PRSS35	167681	broad.mit.edu	36	6	84290937	84290937	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001170423	exon3	c.G1058A	p.R353H	.	.	.
VGF	7425	broad.mit.edu	36	7	100593457	100593457	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003378	exon2	c.A1388C	p.H463P	.	.	.
CPA1	1357	broad.mit.edu	36	7	129812365	129812365	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001868	exon8	c.G930T	p.Q310H	.	.	.
LUC7L2	51631	broad.mit.edu	36	7	138757552	138757552	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016019	exon10	c.C1105T	p.R369W	.	.	.
PRSS1	5644	broad.mit.edu	36	7	142139440	142139440	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002769	exon3	c.G442A	p.A148T	.	.	.
ARHGEF5	7984	broad.mit.edu	36	7	143693361	143693361	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005435	exon2	c.T2666C	p.L889P	.	.	.
NCAPG2	54892	broad.mit.edu	36	7	158137781	158137781	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017760	exon23	c.C2899T	p.R967W	.	.	.
COL1A2	1278	broad.mit.edu	36	7	93892872	93892872	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000089	exon43	c.C2796T	p.N932N	.	.	.
SAMD12	401474	broad.mit.edu	36	8	119521358	119521358	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001101676	exon3	c.A216T	p.K72N	.	.	.
GML	2765	broad.mit.edu	36	8	143919572	143919572	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002066	exon3	c.T110C	p.I37T	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2807527	2807527	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033225	exon61	c.C9497T	p.T3166I	.	.	.
TACC1	6867	broad.mit.edu	36	8	38765381	38765381	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006283	exon2	c.C164T	p.S55L	.	.	.
NPDC1	56654	broad.mit.edu	36	9	139057228	139057229	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015392	exon2	c.231_232insA	p.L77fs	.	.	.
OR13D1	286365	broad.mit.edu	36	9	106497348	106497348	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004484	exon1	c.G825A	p.A275A	.	.	.
AKNA	80709	broad.mit.edu	36	9	116149936	116149936	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_030767	exon16	c.A3287C	p.H1096P	.	.	.
DAB2IP	153090	broad.mit.edu	36	9	123561074	123561074	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032552	exon5	c.G509A	p.R170Q	.	.	.
ADAMTSL1	92949	broad.mit.edu	36	9	18564215	18564215	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052866	exon4	c.C425T	p.T142M	.	.	.
FAM22F	54754	broad.mit.edu	36	9	96122614	96122614	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017561	exon5	c.G1065C	p.K355N	.	.	.
HTR2C	3358	broad.mit.edu	36	X	113988926	113988926	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000868	exon5	c.C454T	p.R152W	.	.	.
KIAA1210	57481	broad.mit.edu	36	X	118106500	118106500	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020721	exon11	c.G2721A	p.Q907Q	.	.	.
ACRC	93953	broad.mit.edu	36	X	70740705	70740705	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3867-01A-01W-0995-10	TCGA-AA-3867-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052957	exon8	c.T853C	p.S285P	.	.	.