Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
SLC18A2	6571	broad.mit.edu	36	10	119005004	119005004	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003054	exon8	c.C815A	p.P272Q	.	.	.
PRLHR	2834	broad.mit.edu	36	10	120343829	120343829	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004248	exon2	c.C918T	p.H306H	.	.	.
UPF2	26019	broad.mit.edu	36	10	12079705	12079705	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080599	exon8	c.C1816T	p.R606W	.	.	.
DMBT1	1755	broad.mit.edu	36	10	124392763	124392763	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007329	exon53	c.G7101A	p.A2367A	.	.	.
BEND7	222389	broad.mit.edu	36	10	13521247	13521247	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152751	exon9	c.G1338A	p.G446G	.	.	.
SVIL	6840	broad.mit.edu	36	10	29858648	29858648	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003174	exon11	c.C1056T	p.I352I	.	.	.
MUC6	4588	broad.mit.edu	36	11	1006171	1006171	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005961	exon31	c.C6630T	p.A2210A	.	.	.
COPB1	1315	broad.mit.edu	36	11	14436764	14436764	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016451	exon21	c.C2692T	p.R898C	.	.	.
C11orf41	25758	broad.mit.edu	36	11	33596767	33596767	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012194	exon15	c.C4501T	p.R1501C	.	.	.
OR8J1	219477	broad.mit.edu	36	11	55884663	55884663	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005205	exon1	c.G365A	p.R122H	.	.	.
SLCO2B1	11309	broad.mit.edu	36	11	74593142	74593142	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145212	exon11	c.G1567A	p.A523T	.	.	.
TMEM119	338773	broad.mit.edu	36	12	107510124	107510124	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181724	exon2	c.G165A	p.P55P	.	.	.
KNTC1	9735	broad.mit.edu	36	12	121664226	121664226	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014708	exon55	c.A5842G	p.K1948E	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
TMTC1	83857	broad.mit.edu	36	12	29796039	29796039	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001193451	exon5	c.G765C	p.Q255H	.	.	.
NELL2	4753	broad.mit.edu	36	12	43202208	43202208	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001145108	exon18	c.C2017T	p.R673X	.	.	.
DYRK4	8798	broad.mit.edu	36	12	4575670	4575670	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003845	exon5	c.A377T	p.N126I	.	.	.
AVIL	10677	broad.mit.edu	36	12	56478031	56478031	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006576	exon19	c.A2361G	p.E787E	.	.	.
MFAP5	8076	broad.mit.edu	36	12	8699655	8699655	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003480	exon4	c.G133T	p.D45Y	.	.	.
SLC10A2	6555	broad.mit.edu	36	13	102508675	102508675	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000452	exon2	c.C436A	p.L146I	.	.	.
LNX2	222484	broad.mit.edu	36	13	27034720	27034720	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153371	exon5	c.G1054T	p.G352C	.	.	.
FREM2	341640	broad.mit.edu	36	13	38163590	38163590	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207361	exon1	c.T4109G	p.F1370C	.	.	.
PCDH9	5101	broad.mit.edu	36	13	66697982	66697982	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020403	exon2	c.G2592T	p.K864N	.	.	.
YLPM1	56252	broad.mit.edu	36	14	74353534	74353534	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019589	exon14	c.T5833C	p.W1945R	.	.	.
TDP1	55775	broad.mit.edu	36	14	89499358	89499358	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001008744	exon2	c.C147T	p.S49S	.	.	.
LTK	4058	broad.mit.edu	36	15	39583867	39583867	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002344	exon19	c.G2311A	p.A771T	.	.	.
DTWD1	56986	broad.mit.edu	36	15	47722962	47722962	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001144955	exon5	c.C810A	p.Y270X	.	.	.
MYO5A	4644	broad.mit.edu	36	15	50508010	50508010	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000259	exon3	c.C187T	p.R63X	.	.	.
ONECUT1	3175	broad.mit.edu	36	15	50868331	50868331	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004498	exon1	c.G1043A	p.R348Q	.	.	.
RFX7	64864	broad.mit.edu	36	15	54174288	54174288	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022841	exon9	c.G2930A	p.R977Q	.	.	.
PRC1	9055	broad.mit.edu	36	15	89314743	89314743	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003981	exon12	c.C1467T	p.N489N	.	.	.
IGF1R	3480	broad.mit.edu	36	15	97273938	97273938	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000875	exon8	c.G1732A	p.A578T	.	.	.
RNF40	9810	broad.mit.edu	36	16	30690933	30690933	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014771	exon19	c.G2750A	p.R917H	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3719625	3719625	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004380	exon31	c.C5424A	p.C1808X	.	.	.
TERF2	7014	broad.mit.edu	36	16	67948401	67948401	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005652	exon10	c.A1404G	p.G468G	.	.	.
WFDC1	58189	broad.mit.edu	36	16	82909395	82909395	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021197	exon3	c.G354A	p.V118V	.	.	.
TUBB3	10381	broad.mit.edu	36	16	88528662	88528662	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006086	exon4	c.G302T	p.W101L	.	.	.
MYH1	4619	broad.mit.edu	36	17	10360241	10360241	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005963	exon4	c.C348T	p.Y116Y	.	.	.
COL1A1	1277	broad.mit.edu	36	17	45622387	45622387	+	Missense_Mutation	SNP	C	T	T	rs72653136	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000088	exon36	c.G2533A	p.G845R	.	.	.
GATA6	2627	broad.mit.edu	36	18	18016736	18016736	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005257	exon5	c.G1449A	p.M483I	.	.	.
KIAA1632	57724	broad.mit.edu	36	18	41756540	41756540	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020964	exon16	c.C2863T	p.R955X	.	.	.
PTPRM	5797	broad.mit.edu	36	18	7945226	7945226	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002845	exon7	c.C946T	p.R316X	.	.	.
SYDE1	85360	broad.mit.edu	36	19	15083191	15083191	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033025	exon5	c.G1358A	p.R453Q	.	.	.
TSHZ3	57616	broad.mit.edu	36	19	36461116	36461116	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020856	exon2	c.G1423A	p.D475N	.	.	.
RYR1	6261	broad.mit.edu	36	19	43767462	43767462	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001042723	exon101	c.G14671A	p.G4891R	.	.	.
IL28B	282617	broad.mit.edu	36	19	44426130	44426130	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_172139	exon5	c.C573T	p.S191S	.	.	.
ARHGEF1	9138	broad.mit.edu	36	19	47101785	47101785	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198977	exon24	c.C2271T	p.N757N	.	.	.
PSG1	5669	broad.mit.edu	36	19	48074161	48074161	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006905	exon2	c.G174T	p.L58F	.	.	.
ZNF233	353355	broad.mit.edu	36	19	49470420	49470420	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181756	exon5	c.G1767A	p.E589E	.	.	.
PTOV1	53635	broad.mit.edu	36	19	55055187	55055187	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017432	exon11	c.C1174T	p.R392C	.	.	.
KIR3DL3	115653	broad.mit.edu	36	19	59939285	59939285	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153443	exon8	c.C1143T	p.Y381Y	.	.	.
PTGFRN	5738	broad.mit.edu	36	1	117305589	117305589	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020440	exon5	c.C1415T	p.T472M	.	.	.
GJA8	2703	broad.mit.edu	36	1	145847182	145847182	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005267	exon2	c.C476T	p.T159I	.	.	.
HRNR	388697	broad.mit.edu	36	1	150457596	150457596	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001009931	exon3	c.G3133A	p.G1045S	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153715807	153715807	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018489	exon3	c.C3478T	p.R1160W	.	.	.
PYHIN1	149628	broad.mit.edu	36	1	157210082	157210082	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198928	exon8	c.G1354T	p.A452S	.	.	.
BAT2L2	23215	broad.mit.edu	36	1	169802051	169802051	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015172	exon21	c.T6167G	p.F2056C	.	.	.
SERPINC1	462	broad.mit.edu	36	1	172145389	172145389	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000488	exon5	c.C1077T	p.D359D	.	.	.
FAM5C	339479	broad.mit.edu	36	1	188396568	188396568	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_199051	exon7	c.C1037T	p.T346I	.	.	.
KDM5B	10765	broad.mit.edu	36	1	200981713	200981713	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006618	exon16	c.A2219T	p.D740V	.	.	.
BATF3	55509	broad.mit.edu	36	1	210936964	210936964	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018664	exon2	c.C157T	p.R53W	.	.	.
USH2A	7399	broad.mit.edu	36	1	213915255	213915255	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_206933	exon63	c.C12621T	p.A4207A	.	.	.
EPHA10	284656	broad.mit.edu	36	1	37999742	37999742	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001099439	exon3	c.G772A	p.A258T	.	.	.
KCNQ4	9132	broad.mit.edu	36	1	41076668	41076668	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004700	exon14	c.G1974A	p.P658P	.	.	.
DMRTB1	63948	broad.mit.edu	36	1	53697750	53697750	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033067	exon1	c.G36A	p.S12S	.	.	.
PER3	8863	broad.mit.edu	36	1	7809995	7809995	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016831	exon17	c.G2395T	p.V799F	.	.	.
ABCA4	24	broad.mit.edu	36	1	94259831	94259831	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000350	exon34	c.G4801T	p.E1601X	.	.	.
DNMT3B	1789	broad.mit.edu	36	20	30836294	30836294	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175848	exon4	c.C274T	p.R92W	.	.	.
TRIB3	57761	broad.mit.edu	36	20	320143	320143	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021158	exon3	c.C504T	p.T168T	.	.	.
MMP9	4318	broad.mit.edu	36	20	44075355	44075355	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004994	exon9	c.C1385T	p.T462M	.	.	.
SALL4	57167	broad.mit.edu	36	20	49840673	49840673	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020436	exon2	c.C1756T	p.R586C	.	.	.
C20orf195	79025	broad.mit.edu	36	20	61658299	61658299	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024059	exon2	c.A839T	p.K280M	.	.	.
KRTAP24-1	643803	broad.mit.edu	36	21	30576858	30576858	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001085455	exon1	c.G264A	p.P88P	.	.	.
IFNAR2	3455	broad.mit.edu	36	21	33557547	33557547	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207585	exon9	c.G1420A	p.G474R	.	.	.
RUNX1	861	broad.mit.edu	36	21	35128598	35128598	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001754	exon7	c.C784T	p.Q262X	.	.	.
ABCG1	9619	broad.mit.edu	36	21	42581490	42581490	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207629	exon10	c.C1214T	p.S405L	.	.	.
CLTCL1	8218	broad.mit.edu	36	22	17568971	17568971	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001835	exon23	c.G3634A	p.E1212K	.	.	.
GGA1	26088	broad.mit.edu	36	22	36356046	36356046	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001172687	exon13	c.C1254T	p.S418S	.	.	.
PPPDE2	27351	broad.mit.edu	36	22	40330073	40330073	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015704	exon4	c.G211T	p.V71L	.	.	.
CNTNAP5	129684	broad.mit.edu	36	2	125264064	125264064	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_130773	exon18	c.C2865A	p.G955G	.	.	.
TUBA3E	112714	broad.mit.edu	36	2	130668200	130668200	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207312	exon4	c.C685T	p.R229C	.	.	.
KYNU	8942	broad.mit.edu	36	2	143434805	143434805	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001032998	exon8	c.C725T	p.A242V	.	.	.
NEB	4703	broad.mit.edu	36	2	152192436	152192436	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001164507	exon69	c.C9990T	p.S3330S	.	.	.
TTN	7273	broad.mit.edu	36	2	179139738	179139738	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003319	exon154	c.A52171G	p.S17391G	.	.	.
ITGA4	3676	broad.mit.edu	36	2	182095258	182095258	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000885	exon18	c.C2018T	p.T673M	.	.	.
CALCRL	10203	broad.mit.edu	36	2	187933649	187933649	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005795	exon10	c.C702G	p.G234G	.	.	.
ALS2CR8	79800	broad.mit.edu	36	2	203542968	203542968	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001104586	exon10	c.G1035C	p.M345I	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206883811	206883811	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020923	exon5	c.C6314T	p.A2105V	.	.	.
MAP2	4133	broad.mit.edu	36	2	210226266	210226266	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031847	exon4	c.C127T	p.R43X	.	.	.
ERBB4	2066	broad.mit.edu	36	2	211997191	211997191	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005235	exon23	c.G2800A	p.E934K	.	.	.
ALK	238	broad.mit.edu	36	2	29351493	29351493	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004304	exon11	c.C2017A	p.Q673K	.	.	.
C2orf86	51057	broad.mit.edu	36	2	63485109	63485109	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015910	exon10	c.C1013A	p.S338X	.	.	.
GKN1	56287	broad.mit.edu	36	2	69058294	69058294	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019617	exon3	c.A130G	p.N44D	.	.	.
SENP7	57337	broad.mit.edu	36	3	102545266	102545266	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020654	exon14	c.C2060A	p.A687D	.	.	.
BOC	91653	broad.mit.edu	36	3	114451395	114451395	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033254	exon3	c.C56A	p.A19D	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180418785	180418785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006218	exon10	c.G1633A	p.E545K	 PIK3CA,urinary_tract,bladder,Substitution - Missense,0 	.	.
CCR8	1237	broad.mit.edu	36	3	39349459	39349459	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005201	exon2	c.C633T	p.F211F	.	.	.
KLHDC8B	200942	broad.mit.edu	36	3	49188091	49188091	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173546	exon6	c.G918A	p.R306R	.	.	.
DUSP7	1849	broad.mit.edu	36	3	52059973	52059973	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001947	exon3	c.G1158A	p.G386G	.	.	.
TADA3	10474	broad.mit.edu	36	3	9806586	9806586	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133480	exon3	c.A269G	p.H90R	.	.	.
SNX25	83891	broad.mit.edu	36	4	186511736	186511736	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031953	exon15	c.T2078C	p.F693S	.	.	.
PCDH7	5099	broad.mit.edu	36	4	30334696	30334696	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032456	exon1	c.C2554A	p.Q852K	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54851395	54851395	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006206	exon22	c.C3039T	p.S1013S	.	.	.
UGT2B28	54490	broad.mit.edu	36	4	70181316	70181316	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_053039	exon1	c.A509G	p.Y170C	.	.	.
GRID2	2895	broad.mit.edu	36	4	94364861	94364861	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001510	exon7	c.A1037T	p.K346M	.	.	.
APC	324	broad.mit.edu	36	5	112202069	112202070	+	Frame_Shift_Ins	INS	-	AA	AA	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000038	exon16	c.2879_2880insAA	p.S960fs	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13876419	13876419	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001369	exon40	c.C6640A	p.L2214M	.	.	.
PCDHB5	26167	broad.mit.edu	36	5	140495628	140495628	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015669	exon1	c.C428A	p.P143Q	.	.	.
PCDHGA1	56114	broad.mit.edu	36	5	140692625	140692625	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031993	exon1	c.C2190T	p.G730G	.	.	.
OSMR	9180	broad.mit.edu	36	5	38917511	38917511	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001168355	exon4	c.G306T	p.E102D	.	.	.
PDE8B	8622	broad.mit.edu	36	5	76663004	76663004	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003719	exon5	c.G672A	p.A224A	.	.	.
APC	324	broad.mit.edu	36	5	112203423	112203423	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.4179delT	p.S1393fs	.	.	.
LPA	4018	broad.mit.edu	36	6	160941990	160941990	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005577	exon20	c.G3076A	p.V1026I	.	.	.
FRMD1	79981	broad.mit.edu	36	6	168204384	168204384	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001122841	exon9	c.C1044T	p.D348D	.	.	.
LRRC16A	55604	broad.mit.edu	36	6	25646185	25646185	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017640	exon25	c.A2191G	p.K731E	.	.	.
BTN3A1	11119	broad.mit.edu	36	6	26521683	26521683	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145008	exon10	c.G1170A	p.R390R	.	.	.
CLPS	1208	broad.mit.edu	36	6	35870963	35870963	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001832	exon3	c.G277A	p.V93M	.	.	.
MRAP2	112609	broad.mit.edu	36	6	84821795	84821795	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138409	exon2	c.G39T	p.Q13H	.	.	.
RELN	5649	broad.mit.edu	36	7	102967936	102967936	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005045	exon44	c.C6874T	p.R2292C	.	.	.
CPVL	54504	broad.mit.edu	36	7	29072178	29072178	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031311	exon10	c.T949G	p.F317V	.	.	.
ADCYAP1R1	117	broad.mit.edu	36	7	31109416	31109416	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001199636	exon15	c.G1168A	p.G390R	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2808208	2808208	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033225	exon60	c.G9398T	p.R3133L	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3064367	3064367	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033225	exon29	c.A4490T	p.Q1497L	.	.	.
ANK1	286	broad.mit.edu	36	8	41671385	41671385	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020475	exon28	c.G3209T	p.C1070F	.	.	.
RP1	6101	broad.mit.edu	36	8	55696503	55696503	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006269	exon2	c.G424A	p.V142I	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77927847	77927847	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024721	exon10	c.A6135T	p.P2045P	.	.	.
DBC1	1620	broad.mit.edu	36	9	120969874	120969874	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014618	exon8	c.A1595G	p.K532R	.	.	.
KIAA0649	9858	broad.mit.edu	36	9	137518185	137518185	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014811	exon4	c.G2008A	p.E670K	.	.	.
LINGO2	158038	broad.mit.edu	36	9	27939432	27939432	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152570	exon7	c.G1238A	p.R413H	.	.	.
ODZ1	10178	broad.mit.edu	36	X	123857768	123857768	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014253	exon2	c.T221A	p.M74K	.	.	.
ATXN3L	92552	broad.mit.edu	36	X	13247620	13247620	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135995	exon1	c.C355G	p.H119D	.	.	.
MAGEC3	139081	broad.mit.edu	36	X	140812123	140812123	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_177456	exon5	c.C19G	p.L7V	.	.	.
MAGEC2	51438	broad.mit.edu	36	X	141119019	141119019	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016249	exon3	c.C421A	p.L141I	.	.	.
SLITRK4	139065	broad.mit.edu	36	X	142544530	142544530	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173078	exon2	c.T2061A	p.I687I	.	.	.
SCML2	10389	broad.mit.edu	36	X	18184933	18184933	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006089	exon11	c.G1412T	p.R471M	.	.	.
KLHL34	257240	broad.mit.edu	36	X	21585267	21585267	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153270	exon1	c.C561T	p.D187D	.	.	.
MAGEB18	286514	broad.mit.edu	36	X	26067533	26067533	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173699	exon2	c.C510A	p.I170I	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3238553	3238553	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015419	exon7	c.G7691T	p.C2564F	.	.	.
FAM47B	170062	broad.mit.edu	36	X	34872260	34872260	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152631	exon1	c.G1391A	p.R464H	.	.	.
HUWE1	10075	broad.mit.edu	36	X	53593159	53593159	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031407	exon67	c.G9521A	p.R3174H	.	.	.
CYSLTR1	10800	broad.mit.edu	36	X	77415765	77415765	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3818-01A-01W-0900-09	TCGA-AA-3818-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006639	exon3	c.C135G	p.L45L	.	.	.