Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
EMX2	2018	broad.mit.edu	36	10	119293080	119293080	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004098	exon1	c.G312A	p.S104S	.	.	.
APBB1IP	54518	broad.mit.edu	36	10	26889743	26889743	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019043	exon13	c.A1333G	p.T445A	.	.	.
KIAA1462	57608	broad.mit.edu	36	10	30357742	30357742	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020848	exon3	c.G1341T	p.K447N	.	.	.
CDON	50937	broad.mit.edu	36	11	125336900	125336900	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016952	exon19	c.G3560A	p.R1187H	.	.	.
LDHC	3948	broad.mit.edu	36	11	18429141	18429141	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002301	exon8	c.G890A	p.R297Q	.	.	.
C11orf41	25758	broad.mit.edu	36	11	33596781	33596781	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012194	exon15	c.C4515T	p.Y1505Y	.	.	.
OR51F2	119694	broad.mit.edu	36	11	4799233	4799233	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004753	exon1	c.G42A	p.S14S	.	.	.
OR5AP2	338675	broad.mit.edu	36	11	56166068	56166068	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001002925	exon1	c.G424A	p.V142M	.	.	.
PRKRIR	5612	broad.mit.edu	36	11	75740172	75740172	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004705	exon5	c.G1670A	p.R557H	.	.	.
KIAA1467	57613	broad.mit.edu	36	12	13100126	13100126	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020853	exon2	c.C412T	p.R138C	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289552	25289552	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G34A	p.G12S	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1 	.	.
ARHGAP9	64333	broad.mit.edu	36	12	56159171	56159171	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032496	exon2	c.G286A	p.V96I	.	.	.
ANO2	57101	broad.mit.edu	36	12	5807229	5807229	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020373	exon7	c.C847T	p.R283C	.	.	.
IL22	50616	broad.mit.edu	36	12	66933383	66933383	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020525	exon1	c.C113T	p.S38F	.	.	.
SLC2A14	144195	broad.mit.edu	36	12	7861751	7861751	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153449	exon11	c.C1287T	p.A429A	.	.	.
CDC16	8881	broad.mit.edu	36	13	114026896	114026896	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001078645	exon7	c.C604T	p.R202C	.	.	.
ZMYM2	7750	broad.mit.edu	36	13	19557966	19557966	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_197968	exon25	c.C3946A	p.Q1316K	.	.	.
TNFSF11	8600	broad.mit.edu	36	13	42079003	42079003	+	Silent	SNP	G	A	A	rs9566999	byHapMap	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003701	exon5	c.G903A	p.P301P	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104489205	104489205	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138420	exon7	c.G3628A	p.D1210N	.	.	.
SLC7A7	9056	broad.mit.edu	36	14	22352214	22352214	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126106	exon3	c.C234T	p.V78V	.	.	.
VRTN	55237	broad.mit.edu	36	14	73893505	73893505	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018228	exon2	c.C266T	p.A89V	.	.	.
LTBP2	4053	broad.mit.edu	36	14	74068967	74068967	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000428	exon10	c.C1902T	p.D634D	.	.	.
HERC2	8924	broad.mit.edu	36	15	26188024	26188024	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004667	exon11	c.C1411T	p.R471C	.	.	.
NTRK3	4916	broad.mit.edu	36	15	86470527	86470527	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001007156	exon12	c.C1375T	p.R459W	.	.	.
CCNF	899	broad.mit.edu	36	16	2443295	2443295	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001761	exon14	c.A1571C	p.E524A	.	.	.
INO80E	283899	broad.mit.edu	36	16	29919836	29919837	+	Missense_Mutation	DNP	GG	CA	CA	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173618	exon5	c.370_371CA	.	.	.	.
MAP2K4	6416	broad.mit.edu	36	17	11969393	11969393	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003010	exon8	c.T871C	p.W291R	.	.	.
TP53	7157	broad.mit.edu	36	17	7519233	7519233	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon5	c.G422C	p.C141S	.	.	.
WIPF2	147179	broad.mit.edu	36	17	35674567	35674570	+	Frame_Shift_Del	DEL	AGAG	-	-	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	AGAG	AGAG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133264	exon5	c.613_616del	p.205_206del	.	.	.
ZNF207	7756	broad.mit.edu	36	17	27701321	27701321	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
WIZ	58525	broad.mit.edu	36	19	15399075	15399075	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021241	exon4	c.G799C	p.E267Q	.	.	.
CYP4F2	8529	broad.mit.edu	36	19	15851704	15851704	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001082	exon10	c.C1119A	p.D373E	.	.	.
ATP4A	495	broad.mit.edu	36	19	40742784	40742784	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000704	exon7	c.C819T	p.G273G	.	.	.
ZNF285	26974	broad.mit.edu	36	19	49583348	49583348	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152354	exon4	c.G899T	p.S300I	.	.	.
ZNF264	9422	broad.mit.edu	36	19	62415926	62415926	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003417	exon4	c.G1649A	p.R550H	.	.	.
AGL	178	broad.mit.edu	36	1	100122720	100122720	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000645	exon18	c.C2503A	p.L835I	.	.	.
NPPA	4878	broad.mit.edu	36	1	11830226	11830226	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006172	exon1	c.G103A	p.A35T	.	.	.
B4GALT3	8703	broad.mit.edu	36	1	159411439	159411439	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001199874	exon4	c.C457A	p.Q153K	.	.	.
TNR	7143	broad.mit.edu	36	1	173598489	173598489	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003285	exon14	c.C2787T	p.Y929Y	.	.	.
IGFN1	91156	broad.mit.edu	36	1	199461624	199461624	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001164586	exon22	c.G10536A	p.G3512G	.	.	.
KCNH1	3756	broad.mit.edu	36	1	209037693	209037693	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002238	exon9	c.C1614T	p.A538A	.	.	.
DUSP10	11221	broad.mit.edu	36	1	219946412	219946412	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007207	exon3	c.G831A	p.K277K	.	.	.
ZBTB40	9923	broad.mit.edu	36	1	22719252	22719252	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014870	exon14	c.C2945T	p.T982M	.	.	.
URB2	9816	broad.mit.edu	36	1	227830115	227830115	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014777	exon2	c.C112A	p.P38T	.	.	.
OR2T8	343172	broad.mit.edu	36	1	246151252	246151252	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005522	exon1	c.A310T	p.T104S	.	.	.
OR2T12	127064	broad.mit.edu	36	1	246525344	246525344	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004692	exon1	c.C160T	p.H54Y	.	.	.
OR14C36	127066	broad.mit.edu	36	1	246579507	246579507	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001001918	exon1	c.C808A	p.L270M	.	.	.
PTPRU	10076	broad.mit.edu	36	1	29506229	29506229	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133177	exon19	c.T2822C	p.I941T	.	.	.
GRIK3	2899	broad.mit.edu	36	1	37063855	37063855	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000831	exon11	c.G1690T	p.D564Y	.	.	.
DFFB	1677	broad.mit.edu	36	1	3772324	3772324	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004402	exon3	c.G330A	p.E110E	.	.	.
SLC32A1	140679	broad.mit.edu	36	20	36786923	36786923	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080552	exon1	c.G142A	p.D48N	.	.	.
CLTCL1	8218	broad.mit.edu	36	22	17603298	17603298	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001835	exon6	c.G890A	p.R297H	.	.	.
SEC14L4	284904	broad.mit.edu	36	22	29217832	29217832	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001161368	exon10	c.C900A	p.G300G	.	.	.
LIMK2	3985	broad.mit.edu	36	22	29985980	29985980	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005569	exon5	c.G468A	p.P156P	.	.	.
BPIL2	254240	broad.mit.edu	36	22	31161697	31161697	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_174932	exon8	c.C918T	p.T306T	.	.	.
LGALS1	3956	broad.mit.edu	36	22	36405610	36405610	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002305	exon4	c.G316A	p.E106K	.	.	.
PNPLA3	80339	broad.mit.edu	36	22	42664373	42664373	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025225	exon6	c.G867A	p.S289S	.	.	.
SBF1	6305	broad.mit.edu	36	22	49245621	49245621	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	T	T	T	T	T	T	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002972	exon25	c.A3229C	p.S1077R	.	.	.
TMEM182	130827	broad.mit.edu	36	2	102745188	102745188	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144632	exon1	c.C80T	p.S27L	.	.	.
TMEM163	81615	broad.mit.edu	36	2	135026125	135026125	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030923	exon3	c.C330T	p.S110S	.	.	.
HNMT	3176	broad.mit.edu	36	2	138476228	138476228	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006895	exon4	c.G423A	p.M141I	.	.	.
SCN7A	6332	broad.mit.edu	36	2	166981609	166981609	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002976	exon20	c.C3268G	p.P1090A	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167806572	167806572	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001199143	exon9	c.C1181A	p.S394X	.	.	.
SMC6	79677	broad.mit.edu	36	2	17745049	17745049	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001142286	exon21	c.G2301A	p.E767E	.	.	.
ERBB4	2066	broad.mit.edu	36	2	212203530	212203530	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005235	exon17	c.C1981G	p.L661V	.	.	.
IQCA1	79781	broad.mit.edu	36	2	236937303	236937303	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024726	exon15	c.G1728A	p.P576P	.	.	.
CXCR7	57007	broad.mit.edu	36	2	237154709	237154709	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020311	exon2	c.C862T	p.R288W	.	.	.
GALNT14	79623	broad.mit.edu	36	2	31042604	31042604	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024572	exon3	c.C368T	p.A123V	.	.	.
XDH	7498	broad.mit.edu	36	2	31441898	31441898	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000379	exon23	c.C2473T	p.R825X	.	.	.
PCBP1	5093	broad.mit.edu	36	2	70168684	70168684	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006196	exon1	c.T305C	p.L102P	.	.	.
PHLDB2	90102	broad.mit.edu	36	3	113114866	113114866	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001134439	exon3	c.G1346A	p.R449H	.	.	.
GRAMD1C	54762	broad.mit.edu	36	3	115046067	115046067	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017577	exon2	c.G55A	p.A19T	.	.	.
CASR	846	broad.mit.edu	36	3	123463307	123463307	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000388	exon4	c.G735A	p.Q245Q	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131770093	131770093	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001102608	exon5	c.C2356T	p.R786C	.	.	.
SCN11A	11280	broad.mit.edu	36	3	38888079	38888079	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014139	exon21	c.G3620T	p.C1207F	.	.	.
KIF15	56992	broad.mit.edu	36	3	44790899	44790899	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020242	exon2	c.C28T	p.R10C	.	.	.
ITIH3	3699	broad.mit.edu	36	3	52805656	52805656	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002217	exon3	c.C234T	p.S78S	.	.	.
GRM7	2917	broad.mit.edu	36	3	6878442	6878442	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000844	exon1	c.G367A	p.V123I	.	.	.
ROBO2	6092	broad.mit.edu	36	3	77754179	77754179	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001128929	exon22	c.C3607T	p.R1203X	.	.	.
MIR138-1	406929	broad.mit.edu	36	3	44130727	44130727	+	RNA	SNP	G	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ADH1C	126	broad.mit.edu	36	4	100483057	100483057	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000669	exon6	c.A746T	p.K249I	.	.	.
SYNPO2	171024	broad.mit.edu	36	4	120170734	120170734	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133477	exon4	c.C1356T	p.D452D	.	.	.
TRPC3	7222	broad.mit.edu	36	4	123073029	123073029	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003305	exon1	c.C615T	p.H205H	.	.	.
TRIML1	339976	broad.mit.edu	36	4	189304971	189304971	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178556	exon6	c.G858A	p.T286T	.	.	.
KLF3	51274	broad.mit.edu	36	4	38372835	38372835	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016531	exon5	c.C769T	p.R257W	.	.	.
CXCL5	6374	broad.mit.edu	36	4	75082907	75082907	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002994	exon2	c.C122T	p.A41V	.	.	.
APC	324	broad.mit.edu	36	5	112203412	112203412	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.G4168T	p.E1390X	 APC,large_intestine,colon,Substitution - Nonsense,0 	.	.
IL12B	3593	broad.mit.edu	36	5	158680082	158680082	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002187	exon5	c.G507A	p.T169T	.	.	.
SPEF2	79925	broad.mit.edu	36	5	35763657	35763657	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024867	exon21	c.T3038A	p.V1013D	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79062958	79062958	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153610	exon2	c.C2614T	p.L872F	.	.	.
TULP4	56995	broad.mit.edu	36	6	158845138	158845139	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020245	exon13	c.4455_4456insG	p.F1485fs	.	.	.
GRIK2	2898	broad.mit.edu	36	6	102589914	102589914	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021956	exon14	c.A2091C	p.S697S	.	.	.
RSPH4A	345895	broad.mit.edu	36	6	117055585	117055585	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001161664	exon3	c.T1022A	p.L341H	.	.	.
ECT2L	345930	broad.mit.edu	36	6	139177323	139177323	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001077706	exon4	c.C69A	p.L23L	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159570851	159570851	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032532	exon10	c.C1197T	p.Y399Y	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51620809	51620809	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_138694	exon63	c.G11377A	p.A3793T	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51720733	51720733	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_170724	exon58	c.T9640G	p.C3214G	.	.	.
TBX18	9096	broad.mit.edu	36	6	85510705	85510705	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080508	exon6	c.C997T	p.R333C	.	.	.
MLL3	58508	broad.mit.edu	36	7	151476384	151476384	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_170606	exon52	c.G13561A	p.V4521I	.	.	.
DPP6	1804	broad.mit.edu	36	7	154192099	154192099	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001039350	exon9	c.C731T	p.P244L	.	.	.
SDK1	221935	broad.mit.edu	36	7	4119554	4119554	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152744	exon24	c.C3542T	p.T1181M	.	.	.
KIF13B	23303	broad.mit.edu	36	8	29062169	29062169	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015254	exon16	c.C1657T	p.R553X	.	.	.
PXDNL	137902	broad.mit.edu	36	8	52414866	52414866	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144651	exon21	c.G4017A	p.R1339R	.	.	.
PXDNL	137902	broad.mit.edu	36	8	52483904	52483904	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144651	exon17	c.G2833A	p.A945T	.	.	.
FAM110B	90362	broad.mit.edu	36	8	59221865	59221865	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_147189	exon5	c.G522A	p.P174P	.	.	.
TRIM55	84675	broad.mit.edu	36	8	67229065	67229065	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_184085	exon9	c.C1466T	p.A489V	.	.	.
PREX2	80243	broad.mit.edu	36	8	69184299	69184299	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024870	exon25	c.C3033G	p.L1011L	.	.	.
SLC10A5	347051	broad.mit.edu	36	8	82769024	82769024	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001010893	exon1	c.C739T	p.L247L	.	.	.
DECR1	1666	broad.mit.edu	36	8	91102365	91102365	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001359	exon5	c.C470T	p.S157F	.	.	.
GDF6	392255	broad.mit.edu	36	8	97226161	97226161	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001001557	exon2	c.C1174T	p.R392C	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112285723	112285723	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153366	exon10	c.G2002A	p.A668T	.	.	.
FRMPD1	22844	broad.mit.edu	36	9	37734838	37734838	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014907	exon16	c.C2809T	p.R937X	.	.	.
MID2	11043	broad.mit.edu	36	X	107035506	107035506	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3814-01A-01W-0900-09	TCGA-AA-3814-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012216	exon5	c.C1067A	p.A356D	.	.	.