Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
EIF3A	8661	broad.mit.edu	36	10	120791672	120791672	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003750	exon19	c.G3350A	p.R1117Q	.	.	.
KIAA1217	56243	broad.mit.edu	36	10	24874025	24874025	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019590	exon20	c.G5321A	p.R1774H	.	.	.
DNAJC9	23234	broad.mit.edu	36	10	74673613	74673613	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015190	exon4	c.C657A	p.A219A	.	.	.
CYP2C19	1557	broad.mit.edu	36	10	96570297	96570297	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000769	exon6	c.G874C	p.A292P	.	.	.
BSX	390259	broad.mit.edu	36	11	122353747	122353747	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001098169	exon3	c.C522T	p.D174D	.	.	.
CALCA	796	broad.mit.edu	36	11	14947091	14947091	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001741	exon4	c.G256A	p.G86S	.	.	.
KCNA4	3739	broad.mit.edu	36	11	29990519	29990519	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002233	exon2	c.G283A	p.A95T	.	.	.
MRGPRE	116534	broad.mit.edu	36	11	3206558	3206558	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039165	exon2	c.C45T	p.G15G	.	.	.
TMEM179B	374395	broad.mit.edu	36	11	62313716	62313716	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199337	exon4	c.C487T	p.H163Y	.	.	.
SLC22A10	387775	broad.mit.edu	36	11	62821384	62821384	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039752	exon3	c.G540T	p.L180F	.	.	.
KDM2A	22992	broad.mit.edu	36	11	66774456	66774456	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012308	exon17	c.G2379T	p.K793N	.	.	.
IL18BP	10068	broad.mit.edu	36	11	71389136	71389136	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039660	exon3	c.C120T	p.A40A	.	.	.
ARAP1	116985	broad.mit.edu	36	11	72087757	72087757	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001040118	exon18	c.T2482A	p.Y828N	.	.	.
FAT3	120114	broad.mit.edu	36	11	92263819	92263819	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001008781	exon25	c.C13566T	p.G4522G	.	.	.
PRB4	5545	broad.mit.edu	36	12	11352918	11352918	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002723	exon3	c.C266A	p.S89Y	.	.	.
SRRM4	84530	broad.mit.edu	36	12	118078830	118078830	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	A	A	A	C	A	C	Unknown	Valid	Germline	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_194286	exon13	c.A1680C	p.R560S	.	.	.
KIAA1467	57613	broad.mit.edu	36	12	13105946	13105946	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020853	exon4	c.G703A	p.A235T	.	.	.
SLCO1B3	28234	broad.mit.edu	36	12	20942693	20942693	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019844	exon13	c.G1739A	p.R580K	.	.	.
FAR2	55711	broad.mit.edu	36	12	29355282	29355282	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018099	exon7	c.G823A	p.V275I	.	.	.
NUP107	57122	broad.mit.edu	36	12	67411275	67411275	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020401	exon21	c.G1853A	p.R618H	.	.	.
ATP11A	23250	broad.mit.edu	36	13	112538495	112538495	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015205	exon16	c.T1634A	p.F545Y	.	.	.
POSTN	10631	broad.mit.edu	36	13	37058391	37058391	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135934	exon7	c.G780T	p.L260F	.	.	.
TSC22D1	8848	broad.mit.edu	36	13	44046204	44046204	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_183422	exon1	c.C2007T	p.S669S	.	.	.
OLFM4	10562	broad.mit.edu	36	13	52522320	52522320	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006418	exon5	c.A946T	p.I316L	.	.	.
C14orf93	60686	broad.mit.edu	36	14	22526330	22526330	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001130708	exon7	c.A1551G	p.Q517Q	.	.	.
MGA	23269	broad.mit.edu	36	15	39828366	39828366	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001164273	exon16	c.C5452T	p.R1818X	.	.	.
MYO5A	4644	broad.mit.edu	36	15	50400980	50400980	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000259	exon37	c.A4744G	p.T1582A	.	.	.
ZNF609	23060	broad.mit.edu	36	15	62755064	62755064	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015042	exon4	c.C2958T	p.S986S	.	.	.
C16orf7	9605	broad.mit.edu	36	16	88306433	88306434	+	Splice_Site	INS	-	G	G	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	.	.	.	.	.	.	.
PDILT	204474	broad.mit.edu	36	16	20303589	20303589	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_174924	exon3	c.C288T	p.I96I	.	.	.
ATP2A1	487	broad.mit.edu	36	16	28813775	28813775	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004320	exon12	c.G1419A	p.S473S	.	.	.
ST3GAL2	6483	broad.mit.edu	36	16	68989689	68989689	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006927	exon2	c.C246T	p.S82S	.	.	.
PLCG2	5336	broad.mit.edu	36	16	80484837	80484837	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002661	exon12	c.C1009T	p.R337W	.	.	.
TRIM16	10626	broad.mit.edu	36	17	15473206	15473206	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006470	exon9	c.A1143G	p.T381T	.	.	.
AOC2	314	broad.mit.edu	36	17	38251426	38251426	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001158	exon1	c.T1257G	p.L419L	.	.	.
PLD2	5338	broad.mit.edu	36	17	4667459	4667459	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002663	exon17	c.C1754A	p.S585Y	.	.	.
TEX14	56155	broad.mit.edu	36	17	54054084	54054084	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198393	exon5	c.C480A	p.Y160X	.	.	.
HEATR6	63897	broad.mit.edu	36	17	55499801	55499801	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022070	exon8	c.T1014C	p.G338G	.	.	.
TNK1	8711	broad.mit.edu	36	17	7232491	7232491	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003985	exon11	c.G1520A	p.R507H	.	.	.
KCTD1	284252	broad.mit.edu	36	18	22289849	22289849	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198991	exon6	c.G630A	p.L210L	.	.	.
NOTCH3	4854	broad.mit.edu	36	19	15163789	15163789	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000435	exon4	c.G661A	p.D221N	.	.	.
BRD4	23476	broad.mit.edu	36	19	15237389	15237389	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014299	exon5	c.C625G	p.Q209E	.	.	.
SCN1B	6324	broad.mit.edu	36	19	40215364	40215364	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001037	exon2	c.C133T	p.R45C	.	.	.
ZNF345	25850	broad.mit.edu	36	19	42060070	42060070	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003419	exon3	c.C498A	p.I166I	.	.	.
SIGLEC8	27181	broad.mit.edu	36	19	56653347	56653347	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014442	exon1	c.C107T	p.T36M	.	.	.
CD209	30835	broad.mit.edu	36	19	7717360	7717360	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001144895	exon3	c.G164A	p.G55E	.	.	.
ELAVL1	1994	broad.mit.edu	36	19	7934686	7934686	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001419	exon6	c.C662T	p.S221F	.	.	.
DBT	1629	broad.mit.edu	36	1	100452985	100452985	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001918	exon7	c.C915G	p.L305L	.	.	.
MOV10	4343	broad.mit.edu	36	1	113044594	113044594	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020963	exon21	c.G2954A	p.R985Q	.	.	.
TBX15	6913	broad.mit.edu	36	1	119229198	119229198	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152380	exon8	c.G1171A	p.G391R	.	.	.
VPS13D	55187	broad.mit.edu	36	1	12259414	12259414	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018156	exon19	c.G3182A	p.R1061Q	.	.	.
IQGAP3	128239	broad.mit.edu	36	1	154786726	154786726	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178229	exon16	c.C1776A	p.I592I	.	.	.
RC3H1	149041	broad.mit.edu	36	1	172196938	172196938	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_172071	exon12	c.G2270A	p.R757Q	.	.	.
LAMC2	3918	broad.mit.edu	36	1	181478992	181478992	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005562	exon23	c.G3416A	p.R1139Q	.	.	.
RGL1	23179	broad.mit.edu	36	1	182147983	182147983	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015149	exon16	c.C1812A	p.G604G	.	.	.
C1orf26	54823	broad.mit.edu	36	1	183410807	183410807	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001105518	exon5	c.G905A	p.R302Q	.	.	.
DISP1	84976	broad.mit.edu	36	1	221245576	221245576	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032890	exon8	c.C4214T	p.T1405M	.	.	.
NID1	4811	broad.mit.edu	36	1	234241854	234241854	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002508	exon12	c.C2517T	p.C839C	.	.	.
TMEM57	55219	broad.mit.edu	36	1	25684846	25684846	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018202	exon8	c.G1469A	p.R490Q	.	.	.
EFCAB7	84455	broad.mit.edu	36	1	63771795	63771795	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032437	exon5	c.G569A	p.R190H	.	.	.
PDE4B	5142	broad.mit.edu	36	1	66601808	66601808	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002600	exon12	c.C1250T	p.S417L	.	.	.
SIGLEC1	6614	broad.mit.edu	36	20	3623468	3623468	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_023068	exon11	c.G2786A	p.R929H	.	.	.
HNF4A	3172	broad.mit.edu	36	20	42486091	42486091	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001030003	exon8	c.T846A	p.D282E	.	.	.
SLC13A3	64849	broad.mit.edu	36	20	44628432	44628432	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001193339	exon10	c.C1187T	p.S396L	.	.	.
TFAP2C	7022	broad.mit.edu	36	20	54646321	54646321	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003222	exon7	c.T1198A	p.F400I	.	.	.
ZNF831	128611	broad.mit.edu	36	20	57202645	57202645	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178457	exon1	c.C3176A	p.T1059K	.	.	.
ADAMTS5	11096	broad.mit.edu	36	21	27260217	27260217	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007038	exon1	c.C365G	p.A122G	.	.	.
MX1	4599	broad.mit.edu	36	21	41752518	41752518	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001144925	exon19	c.C1952T	p.T651M	.	.	.
TMPRSS3	64699	broad.mit.edu	36	21	42688546	42688546	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024022	exon2	c.C50T	p.S17L	.	.	.
TRAPPC10	7109	broad.mit.edu	36	21	44307896	44307896	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003274	exon7	c.C840T	p.N280N	.	.	.
CYTH4	27128	broad.mit.edu	36	22	36038066	36038066	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013385	exon12	c.C1017T	p.T339T	.	.	.
MEI1	150365	broad.mit.edu	36	22	40478574	40478574	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152513	exon16	c.T1826G	p.L609R	.	.	.
WNT7B	7477	broad.mit.edu	36	22	44697505	44697505	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_058238	exon4	c.C945T	p.T315T	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166869042	166869042	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002977	exon6	c.C640G	p.R214G	 SCN9A,central_nervous_system,brain,Substitution - Nonsense,0 	.	.
LRP2	4036	broad.mit.edu	36	2	169761776	169761776	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004525	exon46	c.G8589A	p.T2863T	.	.	.
KCNS3	3790	broad.mit.edu	36	2	17976354	17976354	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002252	exon3	c.G598A	p.V200M	.	.	.
BARD1	580	broad.mit.edu	36	2	215301940	215301940	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000465	exon11	c.G2039A	p.W680X	.	.	.
HDAC4	9759	broad.mit.edu	36	2	239750531	239750531	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006037	exon6	c.G516C	p.K172N	.	.	.
SPTBN1	6711	broad.mit.edu	36	2	54711878	54711878	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003128	exon16	c.C3190G	p.L1064V	.	.	.
RSAD2	91543	broad.mit.edu	36	2	6944739	6944739	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_080657	exon3	c.G731A	p.R244H	.	.	.
FAM176A	84141	broad.mit.edu	36	2	75573985	75573985	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032181	exon4	c.C344T	p.A115V	.	.	.
FAHD2B	151313	broad.mit.edu	36	2	97113466	97113466	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199336	exon7	c.A828G	p.L276L	.	.	.
CAND2	23066	broad.mit.edu	36	3	12833462	12833462	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001162499	exon10	c.C2031T	p.D677D	.	.	.
SPSB4	92369	broad.mit.edu	36	3	142348799	142348799	+	Nonstop_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080862	exon3	c.T820C	p.X274R	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180418776	180418776	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006218	exon10	c.G1624A	p.E542K	 PIK3CA,central_nervous_system,brain,Substitution - Missense,0 	.	.
VPS8	23355	broad.mit.edu	36	3	186200222	186200222	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001009921	exon44	c.G3881A	p.C1294Y	.	.	.
PCYT1A	5130	broad.mit.edu	36	3	197450143	197450143	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005017	exon10	c.G917T	p.G306V	.	.	.
BSN	8927	broad.mit.edu	36	3	49675456	49675456	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003458	exon7	c.G10861A	p.D3621N	.	.	.
USP53	54532	broad.mit.edu	36	4	120412249	120412249	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019050	exon15	c.A1786G	p.I596V	.	.	.
ZNF827	152485	broad.mit.edu	36	4	147026696	147026696	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178835	exon4	c.G1331A	p.R444H	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155381381	155381381	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017639	exon23	c.G5752T	p.V1918L	.	.	.
APC	324	broad.mit.edu	36	5	112192495	112192495	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon12	c.T1616C	p.V539A	.	.	.
SMAD5	4090	broad.mit.edu	36	5	135538184	135538184	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001419	exon8	c.C1218T	p.L406L	.	.	.
PCDHA4	56144	broad.mit.edu	36	5	140168196	140168196	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031500	exon1	c.G1240T	p.D414Y	.	.	.
PCDHB7	56129	broad.mit.edu	36	5	140534274	140534274	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018940	exon1	c.G1674A	p.S558S	.	.	.
PCDHGC4	56098	broad.mit.edu	36	5	140845092	140845092	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032406	exon1	c.G168A	p.T56T	.	.	.
MCTP1	79772	broad.mit.edu	36	5	94070039	94070039	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001002796	exon22	c.T2199C	p.S733S	.	.	.
APC	324	broad.mit.edu	36	5	112203451	112203451	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.4207delA	p.S1403fs	 APC,upper_aerodigestive_tract,sinonasal_and_nasal_cavity,Substitution - Missense,+2 	.	.
SYCP2L	221711	broad.mit.edu	36	6	11069559	11069559	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001040274	exon27	c.T2291C	p.L764P	.	.	.
GRM1	2911	broad.mit.edu	36	6	146796981	146796981	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000838	exon9	c.C2941T	p.R981C	.	.	.
HIST1H2BA	255626	broad.mit.edu	36	6	25835270	25835270	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_170610	exon1	c.C155T	p.P52L	.	.	.
COL19A1	1310	broad.mit.edu	36	6	70896824	70896824	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001858	exon18	c.G1371T	p.L457L	.	.	.
RIMS1	22999	broad.mit.edu	36	6	73004332	73004332	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001168409	exon4	c.G122T	p.G41V	.	.	.
BCKDHB	594	broad.mit.edu	36	6	81039590	81039590	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_183050	exon9	c.G971A	p.R324Q	.	.	.
CREB5	9586	broad.mit.edu	36	7	28576529	28576529	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004904	exon5	c.G292A	p.V98I	.	.	.
CLN8	2055	broad.mit.edu	36	8	1715939	1715939	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018941	exon3	c.C660G	p.D220E	.	.	.
DUSP26	78986	broad.mit.edu	36	8	33569208	33569208	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024025	exon4	c.C501T	p.L167L	.	.	.
ADAM18	8749	broad.mit.edu	36	8	39644804	39644804	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014237	exon14	c.G1457T	p.G486V	.	.	.
NDUFA8	4702	broad.mit.edu	36	9	123950269	123950269	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014222	exon3	c.C324T	p.D108D	.	.	.
FIBCD1	84929	broad.mit.edu	36	9	132769518	132769518	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145106	exon8	c.G1140A	p.L380L	.	.	.
MID1	4281	broad.mit.edu	36	X	10494981	10494981	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001193277	exon2	c.C607T	p.R203W	.	.	.
IRS4	8471	broad.mit.edu	36	X	107863873	107863873	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003604	exon1	c.C2358T	p.A786A	.	.	.
MECP2	4204	broad.mit.edu	36	X	152949562	152949562	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004992	exon4	c.A911G	p.K304R	.	.	.
H2AFB1	474382	broad.mit.edu	36	X	153766657	153766657	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001017990	exon1	c.C139A	p.R47S	.	.	.
MAGED1	9500	broad.mit.edu	36	X	51656429	51656429	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006986	exon4	c.C938A	p.A313D	.	.	.
ITIH5L	347365	broad.mit.edu	36	X	54800751	54800751	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3812-01A-01W-0900-09	TCGA-AA-3812-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198510	exon8	c.G2481T	p.R827S	.	.	.