Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
SORCS3	22986	broad.mit.edu	36	10	106966744	106966744	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014978	exon19	c.G2608A	p.A870T	.	.	.
ARHGAP21	57584	broad.mit.edu	36	10	24950289	24950289	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020824	exon9	c.G541T	p.A181S	.	.	.
ITIH2	3698	broad.mit.edu	36	10	7813955	7813955	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002216	exon13	c.C1637T	p.T546M	.	.	.
MAPK8IP1	9479	broad.mit.edu	36	11	45880545	45880546	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005456	exon5	c.651_652insC	p.L217fs	.	.	.
STIM1	6786	broad.mit.edu	36	11	4069390	4069390	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003156	exon12	c.G1844A	p.R615H	.	.	.
SYVN1	84447	broad.mit.edu	36	11	64655609	64655609	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032431	exon7	c.T566G	p.F189C	.	.	.
TYR	7299	broad.mit.edu	36	11	88551006	88551006	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000372	exon1	c.G237A	p.S79S	 TYR,central_nervous_system,brain,Substitution - coding silent,0 	.	.
C12orf51	283450	broad.mit.edu	36	12	111157798	111157798	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001109662	exon35	c.G5102T	p.W1701L	.	.	.
GUCY2C	2984	broad.mit.edu	36	12	14732261	14732261	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004963	exon2	c.T221C	p.L74P	.	.	.
KRAS	3845	broad.mit.edu	36	12	25269829	25269829	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004985	exon4	c.G436A	p.A146T	 KRAS,large_intestine,NS,Substitution - Missense,0 	.	.
MLL2	8085	broad.mit.edu	36	12	47718641	47718641	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003482	exon34	c.G8765A	p.R2922Q	.	.	.
FAM186B	84070	broad.mit.edu	36	12	48268655	48268655	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032130	exon6	c.G2383A	p.V795I	.	.	.
C12orf56	115749	broad.mit.edu	36	12	63070512	63070512	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001170633	exon1	c.G101A	p.R34H	.	.	.
CPSF6	11052	broad.mit.edu	36	12	67940216	67940216	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007007	exon8	c.G1441A	p.E481K	.	.	.
BBS10	79738	broad.mit.edu	36	12	75263817	75263817	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024685	exon2	c.G2079T	p.Q693H	.	.	.
DOCK9	23348	broad.mit.edu	36	13	98300312	98300313	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001130048	exon36	c.4003_4004insT	p.T1335fs	.	.	.
ZMYM5	9205	broad.mit.edu	36	13	19297354	19297354	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001142684	exon8	c.A1273G	p.K425E	.	.	.
SPATA13	221178	broad.mit.edu	36	13	23759026	23759026	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166271	exon7	c.G2605A	p.V869I	.	.	.
MTUS2	23281	broad.mit.edu	36	13	28498795	28498795	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001033602	exon1	c.G1990A	p.A664T	.	.	.
PCDH17	27253	broad.mit.edu	36	13	57105014	57105014	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001040429	exon1	c.C333T	p.N111N	.	.	.
EDNRB	1910	broad.mit.edu	36	13	77390520	77390520	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001122659	exon1	c.C190T	p.R64W	.	.	.
SIX4	51804	broad.mit.edu	36	14	60250048	60250048	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017420	exon3	c.T2176C	p.L726L	.	.	.
ATG2B	55102	broad.mit.edu	36	14	95851324	95851324	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018036	exon23	c.G3562T	p.E1188X	.	.	.
EIF2AK4	440275	broad.mit.edu	36	15	38111693	38111693	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001013703	exon36	c.A4691G	p.N1564S	.	.	.
DET1	55070	broad.mit.edu	36	15	86875048	86875048	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001144074	exon2	c.G893A	p.R298Q	.	.	.
NGRN	51335	broad.mit.edu	36	15	88615451	88615451	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001033088	exon3	c.C303G	p.S101S	.	.	.
TRAF7	84231	broad.mit.edu	36	16	2165556	2165556	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032271	exon17	c.A1558T	p.N520Y	.	.	.
SLFN12L	342615	broad.mit.edu	36	17	30830732	30830733	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001195790	exon2	c.610_611insT	p.N204_R205delinsX	.	.	.
UTP6	55813	broad.mit.edu	36	17	27229404	27229404	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018428	exon13	c.C1103T	p.S368L	.	.	.
CCR7	1236	broad.mit.edu	36	17	35965121	35965121	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001838	exon3	c.G536T	p.C179F	.	.	.
KRTAP4-3	85290	broad.mit.edu	36	17	36577829	36577829	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033187	exon1	c.G122A	p.R41H	.	.	.
GH2	2689	broad.mit.edu	36	17	59311852	59311852	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022557	exon4	c.A468G	p.A156A	.	.	.
TP53	7157	broad.mit.edu	36	17	7518275	7518275	+	Missense_Mutation	SNP	C	T	T	rs28934572	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon7	c.G731A	p.G244D	 TP53,central_nervous_system,brain,Substitution - Missense,+2 	.	.
FAM38B	63895	broad.mit.edu	36	18	10670294	10670294	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022068	exon48	c.T7515G	p.S2505S	.	.	.
CYP4F8	11283	broad.mit.edu	36	19	15591493	15591493	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007253	exon5	c.C445T	p.R149C	.	.	.
AXL	558	broad.mit.edu	36	19	46419784	46419784	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_021913	exon4	c.G569A	p.R190H	.	.	.
CEACAM20	125931	broad.mit.edu	36	19	49718773	49718773	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001102597	exon4	c.G481T	p.D161Y	.	.	.
BRSK1	84446	broad.mit.edu	36	19	60497409	60497409	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032430	exon6	c.G591A	p.A197A	.	.	.
DRAM2	128338	broad.mit.edu	36	1	111468962	111468962	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178454	exon5	c.C264A	p.I88I	.	.	.
CSDE1	7812	broad.mit.edu	36	1	115071189	115071189	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001130523	exon13	c.C1447G	p.L483V	.	.	.
FLG	2312	broad.mit.edu	36	1	150553690	150553690	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002016	exon3	c.A296G	p.H99R	.	.	.
INTS3	65123	broad.mit.edu	36	1	152012359	152012359	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_023015	exon30	c.G3118T	p.D1040Y	.	.	.
NUP210L	91181	broad.mit.edu	36	1	152262272	152262272	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207308	exon31	c.C4248T	p.I1416I	.	.	.
CDC73	79577	broad.mit.edu	36	1	191360962	191360962	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024529	exon2	c.C229T	p.R77C	.	.	.
CFH	3075	broad.mit.edu	36	1	194982924	194982924	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000186	exon22	c.C3554A	p.A1185D	.	.	.
PROX1	5629	broad.mit.edu	36	1	212238139	212238139	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002763	exon2	c.C1638T	p.T546T	.	.	.
USH2A	7399	broad.mit.edu	36	1	213968040	213968040	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_206933	exon61	c.C12021T	p.D4007D	.	.	.
HHIPL2	79802	broad.mit.edu	36	1	220783538	220783538	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024746	exon2	c.G938A	p.R313Q	.	.	.
EPHB2	2048	broad.mit.edu	36	1	23105120	23105120	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017449	exon10	c.G1819A	p.E607K	.	.	.
OR2B11	127623	broad.mit.edu	36	1	245681109	245681109	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004492	exon1	c.C799T	p.P267S	.	.	.
KIAA0562	9731	broad.mit.edu	36	1	3729929	3729929	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014704	exon19	c.G2422A	p.G808R	.	.	.
CLSTN1	22883	broad.mit.edu	36	1	9732149	9732149	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014944	exon6	c.C912T	p.C304C	.	.	.
ADAM33	80332	broad.mit.edu	36	20	3600816	3600816	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_025220	exon14	c.C1562T	p.T521M	.	.	.
CDH22	64405	broad.mit.edu	36	20	44313096	44313096	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021248	exon1	c.A245G	p.Y82C	.	.	.
GNAS	2778	broad.mit.edu	36	20	56862638	56862638	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001077490	exon1	c.C736T	p.R246C	.	.	.
USP16	10600	broad.mit.edu	36	21	29337683	29337683	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001992	exon13	c.G1245A	p.E415E	.	.	.
DIP2A	23181	broad.mit.edu	36	21	46796183	46796183	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001146114	exon23	c.G2776A	p.V926M	.	.	.
EMID1	129080	broad.mit.edu	36	22	27958274	27958274	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133455	exon8	c.C706T	p.R236W	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133256991	133256991	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207363	exon14	c.C3863T	p.T1288M	.	.	.
UBXN4	23190	broad.mit.edu	36	2	136250371	136250371	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014607	exon10	c.G1033T	p.A345S	.	.	.
NBAS	51594	broad.mit.edu	36	2	15481953	15481953	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015909	exon23	c.G2514A	p.T838T	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167468551	167468551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001199143	exon2	c.C313T	p.R105C	.	.	.
CHRNG	1146	broad.mit.edu	36	2	233116325	233116325	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005199	exon8	c.C902A	p.A301E	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237908107	237908107	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_057166	exon38	c.G7309A	p.V2437I	.	.	.
PUS10	150962	broad.mit.edu	36	2	61028813	61028813	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144709	exon16	c.C1320T	p.I440I	.	.	.
SFTPB	6439	broad.mit.edu	36	2	85746329	85746329	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198843	exon6	c.C529T	p.R177W	.	.	.
KIAA2018	205717	broad.mit.edu	36	3	114858619	114858619	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001009899	exon7	c.T4600G	p.S1534A	.	.	.
TMCC1	23023	broad.mit.edu	36	3	130872571	130872571	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001017395	exon4	c.G803A	p.S268N	.	.	.
DNAJC13	23317	broad.mit.edu	36	3	133657927	133657927	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015268	exon10	c.C1091T	p.T364M	.	.	.
FBLN2	2199	broad.mit.edu	36	3	13654190	13654190	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001998	exon17	c.G3326A	p.R1109H	.	.	.
LRRC3B	116135	broad.mit.edu	36	3	26726689	26726689	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052953	exon2	c.G522A	p.T174T	.	.	.
MAGI1	9223	broad.mit.edu	36	3	65317540	65317540	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001033057	exon23	c.C3942T	p.A1314A	.	.	.
ANK2	287	broad.mit.edu	36	4	114476627	114476627	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020977	exon30	c.G3556C	p.G1186R	.	.	.
PRSS12	8492	broad.mit.edu	36	4	119422802	119422802	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003619	exon13	c.C2365G	p.L789V	.	.	.
PCDH10	57575	broad.mit.edu	36	4	134292127	134292127	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032961	exon1	c.C1382T	p.P461L	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153468834	153468834	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018315	exon8	c.G1154A	p.R385H	 FBXW7,large_intestine,NS,Substitution - Missense,0 	.	.
ACCN5	51802	broad.mit.edu	36	4	156984293	156984293	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017419	exon5	c.G851A	p.R284H	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183951502	183951502	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080477	exon25	c.G6683A	p.R2228H	.	.	.
TBC1D19	55296	broad.mit.edu	36	4	26353300	26353300	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018317	exon18	c.C1300T	p.R434X	 TBC1D19,breast,NS,Substitution - Missense,0 	.	.
GRK4	2868	broad.mit.edu	36	4	2956061	2956061	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182982	exon2	c.C76T	p.R26C	.	.	.
FRYL	285527	broad.mit.edu	36	4	48270001	48270001	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015030	exon26	c.T2863A	p.L955I	.	.	.
HTRA3	94031	broad.mit.edu	36	4	8335138	8335138	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_053044	exon2	c.G460A	p.V154M	.	.	.
APC	324	broad.mit.edu	36	5	112201960	112201960	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.A2716T	p.R906X	.	.	.
APC	324	broad.mit.edu	36	5	112203538	112203538	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C4294T	p.R1432X	 APC,large_intestine,rectum,Substitution - Nonsense,0 	.	.
TSSK1B	83942	broad.mit.edu	36	5	112798159	112798159	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032028	exon1	c.G277A	p.A93T	.	.	.
TRPC7	57113	broad.mit.edu	36	5	135615237	135615237	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020389	exon6	c.C1578T	p.Y526Y	.	.	.
PCDHB12	56124	broad.mit.edu	36	5	140570542	140570542	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018932	exon1	c.G1879A	p.A627T	.	.	.
TRIO	7204	broad.mit.edu	36	5	14411329	14411329	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007118	exon12	c.G2089A	p.D697N	.	.	.
FAM105B	90268	broad.mit.edu	36	5	14746060	14746060	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138348	exon7	c.C962G	p.T321S	.	.	.
GABRA6	2559	broad.mit.edu	36	5	161051731	161051731	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000811	exon8	c.C1033T	p.P345S	.	.	.
FBXO4	26272	broad.mit.edu	36	5	41970171	41970171	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033484	exon5	c.A902G	p.K301R	.	.	.
LATS1	9113	broad.mit.edu	36	6	150042928	150042928	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004690	exon5	c.T2369C	p.M790T	.	.	.
DLL1	28514	broad.mit.edu	36	6	170434043	170434043	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005618	exon10	c.C2124T	p.Y708Y	.	.	.
TRERF1	55809	broad.mit.edu	36	6	42343980	42343980	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033502	exon5	c.C1327T	p.R443W	.	.	.
RSPH9	221421	broad.mit.edu	36	6	43731354	43731354	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001193341	exon3	c.C426T	p.G142G	.	.	.
OOEP	441161	broad.mit.edu	36	6	74135729	74135729	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080507	exon2	c.C291T	p.F97F	.	.	.
RRAGD	58528	broad.mit.edu	36	6	90145710	90145710	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021244	exon4	c.G711T	p.L237L	.	.	.
CASP8AP2	9994	broad.mit.edu	36	6	90634629	90634629	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001137667	exon8	c.T4899G	p.A1633A	.	.	.
LAMB4	22798	broad.mit.edu	36	7	107533527	107533527	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007356	exon8	c.C841T	p.R281W	.	.	.
KCND2	3751	broad.mit.edu	36	7	119702249	119702249	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012281	exon1	c.C327T	p.H109H	.	.	.
CADPS2	93664	broad.mit.edu	36	7	122090772	122090772	+	Missense_Mutation	SNP	T	A	A	rs41281722	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001167940	exon3	c.A541T	p.I181L	.	.	.
SLC4A2	6522	broad.mit.edu	36	7	150402195	150402195	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001199694	exon16	c.A2630G	p.Q877R	.	.	.
MLL3	58508	broad.mit.edu	36	7	151515756	151515756	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_170606	exon32	c.A4770G	p.A1590A	.	.	.
WBSCR17	64409	broad.mit.edu	36	7	70491215	70491215	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022479	exon3	c.G481A	p.V161M	.	.	.
TRIM50	135892	broad.mit.edu	36	7	72370807	72370807	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178125	exon4	c.G676A	p.E226K	.	.	.
SEMA3D	223117	broad.mit.edu	36	7	84467027	84467027	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152754	exon17	c.G1999A	p.A667T	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110566452	110566452	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_177531	exon58	c.G9580A	p.G3194R	.	.	.
KLHL38	340359	broad.mit.edu	36	8	124734202	124734202	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001081675	exon1	c.G146A	p.R49H	.	.	.
PHF20L1	51105	broad.mit.edu	36	8	133920923	133920923	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016018	exon18	c.G2301C	p.K767N	.	.	.
KCNK9	51305	broad.mit.edu	36	8	140699900	140699900	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016601	exon2	c.G908A	p.R303H	.	.	.
TEX15	56154	broad.mit.edu	36	8	30814330	30814330	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031271	exon3	c.T7863C	p.N2621N	.	.	.
LSM1	27257	broad.mit.edu	36	8	38146562	38146562	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014462	exon3	c.G146A	p.R49H	.	.	.
CHD7	55636	broad.mit.edu	36	8	61927960	61927960	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017780	exon31	c.C6122T	p.S2041F	.	.	.
DFNB31	25861	broad.mit.edu	36	9	116204961	116204961	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015404	exon12	c.G2618A	p.R873Q	.	.	.
PDCL	5082	broad.mit.edu	36	9	124622585	124622585	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005388	exon4	c.G506T	p.G169V	.	.	.
SLC24A2	25769	broad.mit.edu	36	9	19776175	19776175	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020344	exon2	c.C690A	p.I230I	.	.	.
POLR1E	64425	broad.mit.edu	36	9	37493059	37493059	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022490	exon12	c.G1120C	p.A374P	.	.	.
ZCCHC6	79670	broad.mit.edu	36	9	88127805	88127805	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024617	exon13	c.G2680A	p.E894K	.	.	.
TDRD7	23424	broad.mit.edu	36	9	99277538	99277538	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014290	exon12	c.T2132C	p.L711P	.	.	.
ARHGAP6	395	broad.mit.edu	36	X	11067473	11067474	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	-	-	-	-	-	-	Unknown	Wildtype	None	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_013427	exon13	c.2356_2357insG	p.S786fs	.	.	.
PAK3	5063	broad.mit.edu	36	X	110325727	110325727	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001128166	exon13	c.G1112T	p.C371F	.	.	.
NDUFA1	4694	broad.mit.edu	36	X	118889996	118889996	+	Missense_Mutation	SNP	G	A	A	rs1801316	byCluster	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004541	exon1	c.G94A	p.G32R	.	.	.
GABRQ	55879	broad.mit.edu	36	X	151570864	151570864	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018558	exon8	c.G1121A	p.R374H	.	.	.
CXorf22	170063	broad.mit.edu	36	X	35894706	35894706	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152632	exon9	c.C1514T	p.S505L	.	.	.
RGAG4	340526	broad.mit.edu	36	X	71266519	71266519	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001024455	exon1	c.C1597T	p.R533C	.	.	.
KIAA2022	340533	broad.mit.edu	36	X	73877892	73877892	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001008537	exon3	c.C3225A	p.D1075E	.	.	.
KLHL4	56062	broad.mit.edu	36	X	86774014	86774014	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3681-01A-01W-0900-09	TCGA-AA-3681-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_057162	exon7	c.T1473A	p.N491K	.	.	.