Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
NUP205	23165	hgsc.bcm.edu	36	7	134912347	134912347	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015135	exon5	c.T579C	p.I193I	.	.	.
CASP2	835	hgsc.bcm.edu	36	7	142701836	142701836	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032982	exon6	c.C595T	p.R199C	.	.	.
PDIA4	9601	hgsc.bcm.edu	36	7	148332102	148332102	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004911	exon10	c.C1655T	p.A552V	.	.	.
GIMAP8	155038	hgsc.bcm.edu	36	7	149805259	149805259	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175571	exon5	c.G1456A	p.G486R	.	.	.
HTR5A	3361	hgsc.bcm.edu	36	7	154506835	154506835	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024012	exon2	c.C779T	p.T260M	.	.	.
CHN2	1124	hgsc.bcm.edu	36	7	29515523	29515523	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001039936	exon6	c.G803A	p.R268Q	.	.	.
INMT	11185	hgsc.bcm.edu	36	7	30759988	30759988	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006774	exon2	c.C271T	p.R91W	.	.	.
ADCYAP1R1	117	hgsc.bcm.edu	36	7	31091549	31091549	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199636	exon9	c.G636A	p.A212A	.	.	.
PDE1C	5137	hgsc.bcm.edu	36	7	31829262	31829262	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001191056	exon14	c.C1532T	p.T511M	.	.	.
BMPER	168667	hgsc.bcm.edu	36	7	34084999	34084999	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133468	exon12	c.G1084A	p.G362S	.	.	.
WIPI2	26100	hgsc.bcm.edu	36	7	5223273	5223273	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001033520	exon3	c.G328A	p.D110N	.	.	.
MAGI2	9863	hgsc.bcm.edu	36	7	77723506	77723506	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012301	exon10	c.C1737T	p.D579D	.	.	.
HEATR2	54919	hgsc.bcm.edu	36	7	786273	786273	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017802	exon12	c.C2397T	p.D799D	.	.	.
COL1A2	1278	hgsc.bcm.edu	36	7	93892889	93892889	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000089	exon43	c.G2813A	p.R938H	.	.	.
DYNC1I1	1780	hgsc.bcm.edu	36	7	95280450	95280450	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004411	exon4	c.C230T	p.P77L	.	.	.
OR2AE1	81392	hgsc.bcm.edu	36	7	99311744	99311744	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005276	exon1	c.A849C	p.T283T	.	.	.
MACROD2	140733	hgsc.bcm.edu	36	20	15814410	15814410	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001033087	exon6	c.C24T	p.D8D	.	.	.
ZNF337	26152	hgsc.bcm.edu	36	20	25604188	25604188	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015655	exon5	c.G1736A	p.R579Q	.	.	.
ITPA	3704	hgsc.bcm.edu	36	20	3152033	3152033	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033453	exon8	c.G510A	p.A170A	.	.	.
CPNE1	8904	hgsc.bcm.edu	36	20	33677684	33677684	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152927	exon17	c.G1507A	p.A503T	.	.	.
SMOX	54498	hgsc.bcm.edu	36	20	4112184	4112184	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175840	exon7	c.C1254A	p.A418A	.	.	.
GDAP1L1	78997	hgsc.bcm.edu	36	20	42341172	42341172	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024034	exon6	c.C922T	p.R308C	.	.	.
ZSWIM3	140831	hgsc.bcm.edu	36	20	43940289	43940289	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080752	exon2	c.G1685A	p.R562Q	.	.	.
PLTP	5360	hgsc.bcm.edu	36	20	43967025	43967025	+	Missense_Mutation	SNP	C	C	T	rs56126980	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006227	exon9	c.G845A	p.R282Q	.	.	.
ZNFX1	57169	hgsc.bcm.edu	36	20	47301541	47301541	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021035	exon13	c.G3242A	p.R1081H	.	.	.
SLC23A2	9962	hgsc.bcm.edu	36	20	4790649	4790649	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_203327	exon15	c.G1569A	p.S523S	.	.	.
PSMB5	5693	hgsc.bcm.edu	36	14	22565197	22565197	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002797	exon3	c.C733T	p.R245X	.	.	.
CMTM5	116173	hgsc.bcm.edu	36	14	22917430	22917430	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138460	exon2	c.G159A	p.T53T	.	.	.
MYH7	4625	hgsc.bcm.edu	36	14	22963057	22963057	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000257	exon23	c.C2821T	p.R941C	.	.	.
AP1G2	8906	hgsc.bcm.edu	36	14	23102634	23102634	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003917	exon13	c.C1286T	p.T429M	.	.	.
TGM1	7051	hgsc.bcm.edu	36	14	23800884	23800884	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000359	exon3	c.C365T	p.S122L	.	.	.
DHRS1	115817	hgsc.bcm.edu	36	14	23830186	23830186	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138452	exon8	c.C804T	p.D268D	.	.	.
PRKD1	5587	hgsc.bcm.edu	36	14	29136470	29136470	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002742	exon16	c.C2412A	p.P804P	.	.	.
NID2	22795	hgsc.bcm.edu	36	14	51565205	51565205	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007361	exon11	c.C2515T	p.R839W	.	.	.
GPHN	10243	hgsc.bcm.edu	36	14	66416431	66416431	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001024218	exon5	c.C316T	p.R106W	.	.	.
SIPA1L1	26037	hgsc.bcm.edu	36	14	71197884	71197884	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015556	exon7	c.C2202T	p.H734H	.	.	.
ACOT1	641371	hgsc.bcm.edu	36	14	73078123	73078123	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001037161	exon2	c.G631A	p.A211T	.	.	.
SERPINA12	145264	hgsc.bcm.edu	36	14	94034007	94034007	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173850	exon3	c.G481A	p.E161K	.	.	.
SERPINA4	5267	hgsc.bcm.edu	36	14	94103135	94103135	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006215	exon3	c.G725A	p.R242Q	.	.	.
GGT5	2687	hgsc.bcm.edu	36	22	22952662	22952662	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004121	exon7	c.G975A	p.T325T	.	.	.
ASCC2	84164	hgsc.bcm.edu	36	22	28530658	28530658	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032204	exon13	c.C1322A	p.S441X	.	.	.
EP300	2033	hgsc.bcm.edu	36	22	39843239	39843239	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001429	exon2	c.C197T	p.T66I	.	.	.
ARHGAP8	23779	hgsc.bcm.edu	36	22	43636826	43636826	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181334	exon15	c.G1355A	p.R452Q	.	.	.
DNMT1	1786	hgsc.bcm.edu	36	19	10120679	10120679	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130823	exon27	c.C2601T	p.P867P	.	.	.
OR10H2	26538	hgsc.bcm.edu	36	19	15700520	15700520	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013939	exon1	c.G667A	p.V223M	.	.	.
UPF1	5976	hgsc.bcm.edu	36	19	18824027	18824027	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002911	exon6	c.C894T	p.D298D	.	.	.
SLC7A9	11136	hgsc.bcm.edu	36	19	38051256	38051256	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126335	exon2	c.C25T	p.R9W	.	.	.
SBSN	374897	hgsc.bcm.edu	36	19	40707484	40707484	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166034	exon3	c.C1718T	p.T573M	.	.	.
ATP4A	495	hgsc.bcm.edu	36	19	40733621	40733621	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000704	exon21	c.G3034A	p.V1012I	.	.	.
ZNF565	147929	hgsc.bcm.edu	36	19	41365519	41365519	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152477	exon5	c.G1189A	p.G397R	.	.	.
CIC	23152	hgsc.bcm.edu	36	19	47483704	47483704	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015125	exon5	c.C750T	p.H250H	.	.	.
ZFP112	7771	hgsc.bcm.edu	36	19	49524310	49524310	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013380	exon4	c.C1840T	p.R614W	.	.	.
SLC1A5	6510	hgsc.bcm.edu	36	19	51970770	51970770	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145145	exon7	c.G857A	p.R286H	.	.	.
LONP1	9361	hgsc.bcm.edu	36	19	5644616	5644616	+	Missense_Mutation	SNP	C	C	T	rs35804229	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004793	exon16	c.G2485A	p.A829T	.	.	.
HAS1	3036	hgsc.bcm.edu	36	19	56909096	56909096	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001523	exon5	c.G1133A	p.R378H	.	.	.
ZNF600	162966	hgsc.bcm.edu	36	19	57961299	57961299	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198457	exon3	c.C1522T	p.R508C	.	.	.
LAIR1	3903	hgsc.bcm.edu	36	19	59560371	59560371	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021706	exon4	c.G381A	p.P127P	.	.	.
ARHGEF18	23370	hgsc.bcm.edu	36	19	7422071	7422071	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015318	exon7	c.G736A	p.V246M	.	.	.
LRP12	29967	hgsc.bcm.edu	36	8	105572435	105572435	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013437	exon7	c.G2222A	p.R741H	.	.	.
CSMD3	114788	hgsc.bcm.edu	36	8	113392490	113392490	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198123	exon50	c.G7778A	p.R2593H	.	.	.
DLC1	10395	hgsc.bcm.edu	36	8	12994639	12994639	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182643	exon13	c.G3593A	p.R1198Q	.	.	.
KCNQ3	3786	hgsc.bcm.edu	36	8	133221521	133221521	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004519	exon11	c.G1552A	p.A518T	.	.	.
SLC7A2	6542	hgsc.bcm.edu	36	8	17456776	17456776	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003046	exon7	c.G1205A	p.R402Q	.	.	.
KIAA1967	57805	hgsc.bcm.edu	36	8	22526497	22526497	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021174	exon8	c.C607T	p.R203C	.	.	.
ZNF395	55893	hgsc.bcm.edu	36	8	28262638	28262638	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018660	exon9	c.C1353T	p.S451S	.	.	.
ATP6V1H	51606	hgsc.bcm.edu	36	8	54847194	54847194	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015941	exon10	c.G957A	p.E319E	.	.	.
POP1	10940	hgsc.bcm.edu	36	8	99237455	99237455	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145860	exon15	c.C2059T	p.R687C	.	.	.
KIF1B	23095	hgsc.bcm.edu	36	1	10331341	10331341	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015074	exon35	c.C3774T	p.S1258S	.	.	.
WDR47	22911	hgsc.bcm.edu	36	1	109355450	109355450	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014969	exon5	c.G741A	p.W247X	.	.	.
HIPK1	204851	hgsc.bcm.edu	36	1	114314207	114314207	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198269	exon13	c.G1756A	p.A586T	.	.	.
PTGFRN	5738	hgsc.bcm.edu	36	1	117311156	117311156	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020440	exon6	c.G1740A	p.S580S	.	.	.
PRDM2	7799	hgsc.bcm.edu	36	1	13977723	13977723	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001007257	exon3	c.A243T	p.E81D	.	.	.
SV2A	9900	hgsc.bcm.edu	36	1	148149114	148149114	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014849	exon4	c.C843T	p.S281S	.	.	.
TARS2	80222	hgsc.bcm.edu	36	1	148735998	148735998	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025150	exon9	c.C1010T	p.A337V	.	.	.
SETDB1	9869	hgsc.bcm.edu	36	1	149199974	149199974	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145415	exon16	c.G2812A	p.G938R	.	.	.
PEAR1	375033	hgsc.bcm.edu	36	1	155149335	155149335	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001080471	exon18	c.C2359T	p.H787Y	.	.	.
OR6K2	81448	hgsc.bcm.edu	36	1	156936124	156936124	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005279	exon1	c.G943A	p.V315I	.	.	.
OR6K2	81448	hgsc.bcm.edu	36	1	156936549	156936549	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005279	exon1	c.T518C	p.L173P	.	.	.
IGSF9	57549	hgsc.bcm.edu	36	1	158165181	158165181	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135050	exon19	c.G2621A	p.R874Q	.	.	.
ATP1A4	480	hgsc.bcm.edu	36	1	158403107	158403107	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144699	exon8	c.G1213A	p.V405M	.	.	.
POGK	57645	hgsc.bcm.edu	36	1	165085029	165085029	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017542	exon5	c.C589T	p.R197C	.	.	.
GPR161	23432	hgsc.bcm.edu	36	1	166332953	166332953	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153832	exon5	c.C516T	p.D172D	.	.	.
HMCN1	83872	hgsc.bcm.edu	36	1	184159235	184159235	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031935	exon8	c.C1112A	p.S371Y	.	.	.
TRAF5	7188	hgsc.bcm.edu	36	1	209600723	209600723	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004619	exon6	c.G600A	p.A200A	.	.	.
CELA3A	10136	hgsc.bcm.edu	36	1	22208878	22208878	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005747	exon7	c.T736A	p.F246I	.	.	.
LYST	1130	hgsc.bcm.edu	36	1	233989317	233989317	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000081	exon23	c.C6459T	p.S2153S	.	.	.
C1orf201	90529	hgsc.bcm.edu	36	1	24572854	24572854	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199013	exon6	c.G496A	p.V166I	.	.	.
ZNF692	55657	hgsc.bcm.edu	36	1	247117336	247117336	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001193328	exon5	c.G524T	p.S175I	.	.	.
ARID1A	8289	hgsc.bcm.edu	36	1	26972493	26972493	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006015	exon15	c.G3785A	p.R1262H	.	.	.
ZC3H12A	80149	hgsc.bcm.edu	36	1	37719944	37719944	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025079	exon4	c.C739T	p.R247C	.	.	.
MACF1	23499	hgsc.bcm.edu	36	1	39554786	39554786	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012090	exon29	c.C3601T	p.R1201W	.	.	.
HEYL	26508	hgsc.bcm.edu	36	1	39865259	39865259	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014571	exon5	c.C494T	p.T165M	.	.	.
SCMH1	22955	hgsc.bcm.edu	36	1	41287115	41287115	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001172218	exon12	c.C927T	p.G309G	.	.	.
RNF220	55182	hgsc.bcm.edu	36	1	44650549	44650549	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018150	exon2	c.G193A	p.G65S	.	.	.
FAF1	11124	hgsc.bcm.edu	36	1	50823013	50823013	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007051	exon10	c.C899T	p.T300I	.	.	.
CHD5	26038	hgsc.bcm.edu	36	1	6135117	6135117	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015557	exon6	c.C812T	p.T271M	.	.	.
PGM1	5236	hgsc.bcm.edu	36	1	63886896	63886896	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001172818	exon8	c.G1319A	p.R440Q	.	.	.
SLC2A7	155184	hgsc.bcm.edu	36	1	8989977	8989977	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207420	exon10	c.G1171A	p.A391T	.	.	.
KIAA1377	57562	hgsc.bcm.edu	36	11	101338852	101338852	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020802	exon6	c.A1876G	p.T626A	.	.	.
GRIA4	2893	hgsc.bcm.edu	36	11	105347894	105347894	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000829	exon15	c.G2338A	p.V780I	.	.	.
MLL	4297	hgsc.bcm.edu	36	11	117895926	117895926	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005933	exon33	c.G11357A	p.R3786H	.	.	.
PHLDB1	23187	hgsc.bcm.edu	36	11	117992052	117992052	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001144758	exon4	c.C271T	p.R91W	.	.	.
HYOU1	10525	hgsc.bcm.edu	36	11	118430930	118430930	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006389	exon6	c.C472T	p.R158C	.	.	.
PLEKHA7	144100	hgsc.bcm.edu	36	11	16833969	16833969	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175058	exon5	c.C374T	p.T125M	.	.	.
NELL1	4745	hgsc.bcm.edu	36	11	21349008	21349008	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006157	exon15	c.C1583T	p.T528M	.	.	.
DCDC1	341019	hgsc.bcm.edu	36	11	31283858	31283858	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181807	exon6	c.G634A	p.A212T	.	.	.
MADD	8567	hgsc.bcm.edu	36	11	47307194	47307194	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003682	exon36	c.G4861A	p.V1621I	.	.	.
TMEM109	79073	hgsc.bcm.edu	36	11	60443755	60443755	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024092	exon2	c.G14T	p.S5I	.	.	.
SLC3A2	6520	hgsc.bcm.edu	36	11	62412512	62412512	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002394	exon12	c.G1664A	p.R555H	.	.	.
LGALS12	85329	hgsc.bcm.edu	36	11	63033859	63033859	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142536	exon4	c.C472T	p.R158C	.	.	.
POLA2	23649	hgsc.bcm.edu	36	11	64802887	64802887	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002689	exon6	c.T572C	p.I191T	.	.	.
CPT1A	1374	hgsc.bcm.edu	36	11	68285707	68285707	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001031847	exon16	c.A1900G	p.K634E	.	.	.
ORAOV1	220064	hgsc.bcm.edu	36	11	69195762	69195762	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153451	exon3	c.T163C	p.C55R	.	.	.
FOLR1	2348	hgsc.bcm.edu	36	11	71584602	71584602	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016724	exon6	c.C507T	p.C169C	.	.	.
C11orf30	56946	hgsc.bcm.edu	36	11	75904854	75904854	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020193	exon11	c.C1534T	p.R512W	.	.	.
CAPN5	726	hgsc.bcm.edu	36	11	76501336	76501336	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004055	exon4	c.C351T	p.Y117Y	.	.	.
OR5P2	120065	hgsc.bcm.edu	36	11	7774432	7774432	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153444	exon1	c.G634A	p.V212I	.	.	.
NAALAD2	10003	hgsc.bcm.edu	36	11	89536152	89536152	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005467	exon10	c.C1102T	p.R368W	.	.	.
SBF2	81846	hgsc.bcm.edu	36	11	9758606	9758606	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030962	exon40	c.G5485A	p.A1829T	.	.	.
SBF2	81846	hgsc.bcm.edu	36	11	9810383	9810383	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030962	exon27	c.G3616A	p.V1206I	.	.	.
UST	10090	hgsc.bcm.edu	36	6	149436753	149436753	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005715	exon8	c.C1029T	p.Y343Y	.	.	.
TIAM2	26230	hgsc.bcm.edu	36	6	155527358	155527358	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012454	exon7	c.G2146A	p.A716T	.	.	.
IGF2R	3482	hgsc.bcm.edu	36	6	160420652	160420652	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000876	exon38	c.C5529T	p.V1843V	.	.	.
THBS2	7058	hgsc.bcm.edu	36	6	169381667	169381667	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003247	exon8	c.G1081A	p.A361T	.	.	.
GABBR1	2550	hgsc.bcm.edu	36	6	29684366	29684366	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021904	exon15	c.C1797T	p.F599F	.	.	.
IP6K3	117283	hgsc.bcm.edu	36	6	33801292	33801292	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_054111	exon5	c.C669T	p.H223H	.	.	.
ZFAND3	60685	hgsc.bcm.edu	36	6	38192425	38192425	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021943	exon5	c.G461A	p.R154Q	.	.	.
DNAH8	1769	hgsc.bcm.edu	36	6	39060043	39060043	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001371	exon85	c.A12384G	p.L4128L	.	.	.
BAI3	577	hgsc.bcm.edu	36	6	69723413	69723413	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001704	exon8	c.C1516T	p.R506X	.	.	.
PHIP	55023	hgsc.bcm.edu	36	6	79707278	79707278	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017934	exon40	c.C5317T	p.R1773X	.	.	.
UBE2CBP	90025	hgsc.bcm.edu	36	6	83810902	83810902	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198920	exon4	c.G561A	p.E187E	.	.	.
PRSS35	167681	hgsc.bcm.edu	36	6	84290062	84290062	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001170423	exon3	c.G183A	p.V61V	.	.	.
SMYD4	114826	hgsc.bcm.edu	36	17	1650607	1650607	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052928	exon5	c.G831A	p.P277P	.	.	.
ALDH3A2	224	hgsc.bcm.edu	36	17	19507392	19507392	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000382	exon7	c.G1095A	p.S365S	.	.	.
SC65	10609	hgsc.bcm.edu	36	17	37216621	37216621	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006455	exon6	c.C1099T	p.R367W	.	.	.
KCNH4	23415	hgsc.bcm.edu	36	17	37581697	37581697	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012285	exon5	c.G730A	p.V244I	.	.	.
ZMYND15	84225	hgsc.bcm.edu	36	17	4591026	4591026	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032265	exon2	c.G434A	p.R145Q	.	.	.
MRC2	9902	hgsc.bcm.edu	36	17	58113378	58113378	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006039	exon20	c.C2854T	p.R952C	.	.	.
FTSJ3	117246	hgsc.bcm.edu	36	17	59252169	59252169	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017647	exon17	c.C1925T	p.P642L	.	.	.
NLGN2	57555	hgsc.bcm.edu	36	17	7259730	7259730	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020795	exon6	c.C1214T	p.A405V	.	.	.
DNAH2	146754	hgsc.bcm.edu	36	17	7642609	7642609	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020877	exon54	c.C8407T	p.R2803C	.	.	.
DNAH2	146754	hgsc.bcm.edu	36	17	7667921	7667921	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020877	exon74	c.G11374A	p.V3792I	.	.	.
CCDC42	146849	hgsc.bcm.edu	36	17	8579284	8579284	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001158261	exon5	c.C506T	p.A169V	.	.	.
TIMP2	7077	hgsc.bcm.edu	36	17	74363372	74363372	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003255	exon5	c.A635G	p.Q212R	TIMP2,central_nervous_system,brain,Substitution - Nonsense,-1	.	.
ADAMTS1	9510	hgsc.bcm.edu	36	21	27134196	27134196	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006988	exon6	c.C1721T	p.T574M	.	.	.
ITGB2	3689	hgsc.bcm.edu	36	21	45130753	45130753	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127491	exon16	c.C2268T	p.S756S	.	.	.
ITGB2	3689	hgsc.bcm.edu	36	21	45144663	45144663	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127491	exon7	c.C897T	p.F299F	.	.	.
NTAN1	123803	hgsc.bcm.edu	36	16	15042472	15042472	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173474	exon7	c.T495C	p.N165N	.	.	.
MYH11	4629	hgsc.bcm.edu	36	16	15839310	15839310	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040114	exon2	c.G301A	p.V101M	.	.	.
TMC5	79838	hgsc.bcm.edu	36	16	19406114	19406114	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024780	exon13	c.C1800T	p.T600T	.	.	.
DCUN1D3	123879	hgsc.bcm.edu	36	16	20781025	20781025	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173475	exon2	c.C337T	p.R113C	.	.	.
SETD1A	9739	hgsc.bcm.edu	36	16	30888438	30888438	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014712	exon12	c.C2943T	p.D981D	.	.	.
ABCC12	94160	hgsc.bcm.edu	36	16	46695748	46695748	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033226	exon20	c.G2706A	p.T902T	.	.	.
RBL2	5934	hgsc.bcm.edu	36	16	52055692	52055692	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005611	exon12	c.G1614T	p.E538D	.	.	.
NLRC5	84166	hgsc.bcm.edu	36	16	55646882	55646882	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032206	exon27	c.A3696G	p.V1232V	.	.	.
AARS	16	hgsc.bcm.edu	36	16	68845398	68845398	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001605	exon18	c.G2445A	p.L815L	.	.	.
AARS	16	hgsc.bcm.edu	36	16	68861026	68861026	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001605	exon7	c.C958T	p.R320C	.	.	.
ADAT1	23536	hgsc.bcm.edu	36	16	74203872	74203872	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012091	exon7	c.C813T	p.S271S	.	.	.
PMM2	5373	hgsc.bcm.edu	36	16	8812524	8812524	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000303	exon5	c.C435T	p.Y145Y	.	.	.
C18orf1	753	hgsc.bcm.edu	36	18	13635163	13635163	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001003675	exon3	c.C263T	p.A88V	.	.	.
NPC1	4864	hgsc.bcm.edu	36	18	19379049	19379049	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000271	exon12	c.G1820A	p.R607Q	.	.	.
PIK3C3	5289	hgsc.bcm.edu	36	18	37838466	37838466	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002647	exon10	c.G1133A	p.R378H	.	.	.
ATP8B1	5205	hgsc.bcm.edu	36	18	53513455	53513455	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005603	exon10	c.C886T	p.R296C	.	.	.
ALPK2	115701	hgsc.bcm.edu	36	18	54335240	54335240	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052947	exon9	c.C5820T	p.H1940H	ALPK2,ovary,NS,Substitution - coding silent,0	.	.
ARHGAP28	79822	hgsc.bcm.edu	36	18	6898981	6898981	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010000	exon16	c.A1576G	p.K526E	.	.	.
LAMA1	284217	hgsc.bcm.edu	36	18	6954739	6954739	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005559	exon51	c.C7259T	p.P2420L	.	.	.
LAMA1	284217	hgsc.bcm.edu	36	18	7002042	7002042	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005559	exon24	c.C3459T	p.S1153S	.	.	.
TOMM70A	9868	hgsc.bcm.edu	36	3	101576683	101576683	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014820	exon7	c.C1096T	p.R366X	.	.	.
SENP7	57337	hgsc.bcm.edu	36	3	102530016	102530016	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020654	exon22	c.C2860T	p.R954X	.	.	.
TATDN2	9797	hgsc.bcm.edu	36	3	10287572	10287572	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014760	exon4	c.G1706A	p.R569H	.	.	.
CD200R1L	344807	hgsc.bcm.edu	36	3	114029010	114029010	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001008784	exon3	c.G324A	p.S108S	.	.	.
PARP9	83666	hgsc.bcm.edu	36	3	123742285	123742285	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001146103	exon8	c.G1489A	p.A497T	.	.	.
OSBPL11	114885	hgsc.bcm.edu	36	3	126765346	126765346	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022776	exon7	c.A900G	p.I300M	.	.	.
CLSTN2	64084	hgsc.bcm.edu	36	3	141377543	141377543	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022131	exon2	c.A170G	p.D57G	.	.	.
HLTF	6596	hgsc.bcm.edu	36	3	150248538	150248538	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139048	exon17	c.G1859A	p.R620H	.	.	.
VEPH1	79674	hgsc.bcm.edu	36	3	158614395	158614395	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001167911	exon6	c.G875T	p.R292M	.	.	.
PAK2	5062	hgsc.bcm.edu	36	3	198025765	198025765	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002577	exon11	c.G982A	p.G328R	.	.	.
STT3B	201595	hgsc.bcm.edu	36	3	31641538	31641538	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178862	exon12	c.C1856T	p.T619M	.	.	.
LRRFIP2	9209	hgsc.bcm.edu	36	3	37145572	37145572	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017724	exon4	c.C163T	p.R55X	.	.	.
ZNF620	253639	hgsc.bcm.edu	36	3	40528912	40528912	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175888	exon4	c.C167T	p.T56M	.	.	.
LZTFL1	54585	hgsc.bcm.edu	36	3	45852156	45852156	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020347	exon3	c.C253T	p.R85X	.	.	.
MAP4	4134	hgsc.bcm.edu	36	3	47887402	47887402	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001134364	exon13	c.C2764T	p.R922C	.	.	.
WDR51A	25886	hgsc.bcm.edu	36	3	52158931	52158931	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001161581	exon3	c.G102A	p.S34S	.	.	.
PBRM1	55193	hgsc.bcm.edu	36	3	52563817	52563817	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018313	exon27	c.G4251A	p.P1417P	.	.	.
ITIH1	3697	hgsc.bcm.edu	36	3	52793431	52793431	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166434	exon9	c.C879T	p.F293F	.	.	.
LMCD1	29995	hgsc.bcm.edu	36	3	8582282	8582282	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014583	exon5	c.C888T	p.C296C	.	.	.
GHSR	2693	hgsc.bcm.edu	36	3	173648232	173648234	+	In_Frame_Del	DEL	GAA	GAA	-	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	GAA	GAA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198407	exon1	c.664_666del	p.222_222del	.	.	.
IGF1	3479	hgsc.bcm.edu	36	12	101337446	101337446	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001111285	exon3	c.C373T	p.R125C	.	.	.
STAB2	55576	hgsc.bcm.edu	36	12	102633768	102633768	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017564	exon43	c.C4583T	p.A1528V	.	.	.
RNF10	9921	hgsc.bcm.edu	36	12	119485672	119485672	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014868	exon9	c.A1394C	p.E465A	.	.	.
BCL7A	605	hgsc.bcm.edu	36	12	120953051	120953051	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020993	exon2	c.C155T	p.T52M	.	.	.
RAPGEF3	10411	hgsc.bcm.edu	36	12	46429983	46429983	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001098532	exon7	c.G688A	p.V230M	.	.	.
SMARCD1	6602	hgsc.bcm.edu	36	12	48778848	48778848	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139071	exon11	c.C1354T	p.R452X	.	.	.
SLC4A8	9498	hgsc.bcm.edu	36	12	50169761	50169761	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001039960	exon19	c.G2459A	p.G820D	.	.	.
ESPL1	9700	hgsc.bcm.edu	36	12	51950829	51950829	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012291	exon5	c.C1349T	p.T450M	.	.	.
SHMT2	6472	hgsc.bcm.edu	36	12	55914082	55914082	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166359	exon11	c.C1246T	p.R416C	.	.	.
HELB	92797	hgsc.bcm.edu	36	12	64998695	64998695	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033647	exon7	c.C2011T	p.R671C	.	.	.
CHD4	1108	hgsc.bcm.edu	36	12	6570950	6570950	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001273	exon22	c.C3283T	p.R1095C	.	.	.
CPSF6	11052	hgsc.bcm.edu	36	12	67942596	67942596	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007007	exon9	c.G1646A	p.R549H	.	.	.
LRRC23	10233	hgsc.bcm.edu	36	12	6892218	6892218	+	Silent	SNP	G	G	A	rs3759353	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135217	exon7	c.G822A	p.A274A	.	.	.
CLSTN3	9746	hgsc.bcm.edu	36	12	7201390	7201390	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014718	exon17	c.G2566A	p.V856M	.	.	.
ACSS3	79611	hgsc.bcm.edu	36	12	80117347	80117347	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024560	exon9	c.G1347A	p.W449X	.	.	.
KERA	11081	hgsc.bcm.edu	36	12	89973624	89973624	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007035	exon2	c.A566G	p.K189R	.	.	.
TMCC3	57458	hgsc.bcm.edu	36	12	93500195	93500195	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020698	exon2	c.G329A	p.R110H	.	.	.
SPRED1	161742	hgsc.bcm.edu	36	15	36430943	36430943	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152594	exon7	c.G1121T	p.S374I	.	.	.
CAPN3	825	hgsc.bcm.edu	36	15	40483253	40483253	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_212465	exon18	c.G1507A	p.V503M	.	.	.
TP53BP1	7158	hgsc.bcm.edu	36	15	41507579	41507579	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005657	exon18	c.G3740A	p.R1247H	.	.	.
CASC4	113201	hgsc.bcm.edu	36	15	42492838	42492838	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_177974	exon9	c.G1085A	p.R362Q	.	.	.
MYEF2	50804	hgsc.bcm.edu	36	15	46237514	46237514	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016132	exon9	c.G953A	p.R318H	.	.	.
DMXL2	23312	hgsc.bcm.edu	36	15	49560164	49560164	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015263	exon24	c.G6431A	p.R2144Q	.	.	.
CA12	771	hgsc.bcm.edu	36	15	61418168	61418168	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001218	exon8	c.C777T	p.C259C	.	.	.
IGDCC4	57722	hgsc.bcm.edu	36	15	63489570	63489570	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020962	exon3	c.C562T	p.R188W	.	.	.
DIS3L	115752	hgsc.bcm.edu	36	15	64412661	64412661	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001143688	exon17	c.G3122A	p.R1041Q	.	.	.
LCTL	197021	hgsc.bcm.edu	36	15	64644086	64644086	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207338	exon2	c.C264T	p.D88D	.	.	.
ACSBG1	23205	hgsc.bcm.edu	36	15	76250906	76250906	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199377	exon14	c.C2098T	p.R700W	.	.	.
POLG	5428	hgsc.bcm.edu	36	15	87668385	87668385	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126131	exon11	c.C2027T	p.A676V	.	.	.
MCTP2	55784	hgsc.bcm.edu	36	15	92642635	92642635	+	Missense_Mutation	SNP	G	G	A	rs61735139	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001159643	exon1	c.G137A	p.R46H	.	.	.
CHSY1	22856	hgsc.bcm.edu	36	15	99593053	99593053	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014918	exon2	c.C573T	p.S191S	.	.	.
ADH1A	124	hgsc.bcm.edu	36	4	100424651	100424651	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000667	exon5	c.G495A	p.S165S	.	.	.
MANBA	4126	hgsc.bcm.edu	36	4	103779980	103779980	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005908	exon14	c.C1952T	p.T651M	.	.	.
DKK2	27123	hgsc.bcm.edu	36	4	108064751	108064751	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014421	exon4	c.C589T	p.R197C	.	.	.
ANK2	287	hgsc.bcm.edu	36	4	114497048	114497048	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001148	exon38	c.A7825G	p.R2609G	.	.	.
SMARCA5	8467	hgsc.bcm.edu	36	4	144679448	144679448	+	Silent	SNP	G	G	A	rs61761959	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003601	exon13	c.G1677A	p.T559T	.	.	.
OTUD4	54726	hgsc.bcm.edu	36	4	146279016	146279016	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001102653	exon21	c.G2166A	p.P722P	.	.	.
PET112L	5188	hgsc.bcm.edu	36	4	152856621	152856621	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004564	exon5	c.G753A	p.A251A	.	.	.
LDB2	9079	hgsc.bcm.edu	36	4	16113433	16113433	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001290	exon8	c.G1053A	p.P351P	.	.	.
WDR17	116966	hgsc.bcm.edu	36	4	177269823	177269823	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181265	exon2	c.C98T	p.A33V	.	.	.
ADD1	118	hgsc.bcm.edu	36	4	2880124	2880124	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001119	exon12	c.G1600A	p.V534I	.	.	.
ATP10D	57205	hgsc.bcm.edu	36	4	47209519	47209519	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020453	exon2	c.G205A	p.G69R	.	.	.
PIGG	54872	hgsc.bcm.edu	36	4	505636	505636	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017733	exon8	c.C1496T	p.A499V	.	.	.
STK32B	55351	hgsc.bcm.edu	36	4	5520690	5520690	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018401	exon11	c.C1098T	p.N366N	.	.	.
CEP135	9662	hgsc.bcm.edu	36	4	56526607	56526607	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025009	exon8	c.G869A	p.R290H	.	.	.
ARHGAP24	83478	hgsc.bcm.edu	36	4	87063944	87063944	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001025616	exon4	c.G388T	p.G130X	.	.	.
HERC3	8916	hgsc.bcm.edu	36	4	89798591	89798591	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014606	exon10	c.C1072T	p.R358C	.	.	.
TBC1D8B	54885	hgsc.bcm.edu	36	X	105970651	105970651	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198881	exon10	c.C1600T	p.R534C	.	.	.
VSIG1	340547	hgsc.bcm.edu	36	X	107207165	107207165	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182607	exon7	c.G1062A	p.T354T	.	.	.
ARHGAP6	395	hgsc.bcm.edu	36	X	11072119	11072119	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013423	exon11	c.C1469T	p.S490L	.	.	.
HTR2C	3358	hgsc.bcm.edu	36	X	113872046	113872046	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000868	exon4	c.C123T	p.S41S	.	.	.
BCORL1	63035	hgsc.bcm.edu	36	X	128976580	128976580	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021946	exon3	c.C2151T	p.Y717Y	.	.	.
AFF2	2334	hgsc.bcm.edu	36	X	147876633	147876633	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002025	exon20	c.C3654T	p.N1218N	.	.	.
PHKA2	5256	hgsc.bcm.edu	36	X	18821600	18821600	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000292	exon33	c.C3632T	p.T1211M	.	.	.
MAP7D2	256714	hgsc.bcm.edu	36	X	19980982	19980982	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001168465	exon5	c.C530T	p.T177M	.	.	.
CNKSR2	22866	hgsc.bcm.edu	36	X	21537575	21537575	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001168649	exon19	c.G2464A	p.V822M	.	.	.
IL1RAPL1	11141	hgsc.bcm.edu	36	X	29883181	29883181	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014271	exon11	c.C1414T	p.R472W	.	.	.
KCND1	3750	hgsc.bcm.edu	36	X	48711481	48711481	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004979	exon1	c.G142A	p.G48R	.	.	.
GRIPAP1	56850	hgsc.bcm.edu	36	X	48715610	48715610	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020137	exon26	c.G2465A	p.R822Q	.	.	.
GRIPAP1	56850	hgsc.bcm.edu	36	X	48716592	48716592	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020137	exon25	c.C2352T	p.G784G	.	.	.
CCDC120	90060	hgsc.bcm.edu	36	X	48806954	48806954	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001163323	exon4	c.G25A	p.G9R	.	.	.
MAGED2	10916	hgsc.bcm.edu	36	X	54854466	54854466	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201222	exon5	c.G905A	p.R302H	.	.	.
ARHGEF9	23229	hgsc.bcm.edu	36	X	62810702	62810702	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001173480	exon5	c.C559T	p.R187X	.	.	.
FAM123B	139285	hgsc.bcm.edu	36	X	63327788	63327788	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152424	exon2	c.G2104T	p.E702X	.	.	.
NLGN3	54413	hgsc.bcm.edu	36	X	70304163	70304163	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166660	exon5	c.C1371T	p.Y457Y	.	.	.
NHSL2	340527	hgsc.bcm.edu	36	X	71276676	71276676	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001013627	exon6	c.C2553T	p.A851A	.	.	.
NAP1L3	4675	hgsc.bcm.edu	36	X	92814700	92814700	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004538	exon1	c.C260T	p.A87V	.	.	.
SRPX2	27286	hgsc.bcm.edu	36	X	99803834	99803834	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014467	exon4	c.C169T	p.R57X	.	.	.
PSD4	23550	hgsc.bcm.edu	36	2	113666604	113666604	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012455	exon6	c.G1805A	p.R602Q	.	.	.
STEAP3	55240	hgsc.bcm.edu	36	2	119719794	119719794	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182915	exon3	c.G282A	p.P94P	.	.	.
KCNH7	90134	hgsc.bcm.edu	36	2	163101746	163101746	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173162	exon3	c.C398T	p.T133M	.	.	.
SCN1A	6323	hgsc.bcm.edu	36	2	166612503	166612503	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001165964	exon8	c.G1050A	p.M350I	.	.	.
CHRNA1	1134	hgsc.bcm.edu	36	2	175326612	175326612	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000079	exon6	c.G643A	p.D215N	.	.	.
SESTD1	91404	hgsc.bcm.edu	36	2	179756146	179756146	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178123	exon3	c.C70T	p.R24W	.	.	.
COL3A1	1281	hgsc.bcm.edu	36	2	189580514	189580514	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000090	exon45	c.G3299A	p.R1100H	.	.	.
SF3B1	23451	hgsc.bcm.edu	36	2	197974373	197974373	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012433	exon17	c.G2492A	p.R831Q	.	.	.
BMPR2	659	hgsc.bcm.edu	36	2	203128383	203128383	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001204	exon12	c.C1750T	p.R584X	.	.	.
PTH2R	5746	hgsc.bcm.edu	36	2	209016446	209016446	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005048	exon6	c.T638C	p.L213P	.	.	.
TRIP12	9320	hgsc.bcm.edu	36	2	230431839	230431839	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004238	exon3	c.G794A	p.R265H	.	.	.
DGKD	8527	hgsc.bcm.edu	36	2	234041890	234041890	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152879	exon29	c.C3507T	p.H1169H	.	.	.
COL6A3	1293	hgsc.bcm.edu	36	2	237939175	237939175	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_057166	exon9	c.C3922T	p.R1308W	.	.	.
PPM1G	5496	hgsc.bcm.edu	36	2	27459902	27459902	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_177983	exon7	c.G1036A	p.A346T	.	.	.
ALK	238	hgsc.bcm.edu	36	2	29308678	29308678	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004304	exon15	c.C2628T	p.A876A	.	.	.
ABCG5	64240	hgsc.bcm.edu	36	2	43904670	43904670	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022436	exon9	c.G1210A	p.V404I	.	.	.
PSME4	23198	hgsc.bcm.edu	36	2	54006657	54006657	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014614	exon13	c.G1601A	p.R534Q	.	.	.
PNPT1	87178	hgsc.bcm.edu	36	2	55721270	55721270	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033109	exon26	c.G2144A	p.R715Q	.	.	.
EFEMP1	2202	hgsc.bcm.edu	36	2	56003020	56003020	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001039348	exon3	c.C60T	p.T20T	.	.	.
SMYD5	10322	hgsc.bcm.edu	36	2	73301321	73301321	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006062	exon4	c.C370T	p.R124W	.	.	.
ASAP2	8853	hgsc.bcm.edu	36	2	9413768	9413768	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135191	exon14	c.T1170G	p.S390S	.	.	.
SNRNP200	23020	hgsc.bcm.edu	36	2	96313405	96313405	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014014	exon32	c.G4457A	p.R1486H	.	.	.
KDM3A	55818	hgsc.bcm.edu	36	2	86537077	86537077	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001146688	exon6	c.T558C	p.G186G	.	.	.
C9orf30	91283	hgsc.bcm.edu	36	9	102244374	102244374	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080655	exon2	c.C333T	p.I111I	.	.	.
PAPPA	5069	hgsc.bcm.edu	36	9	117989820	117989820	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002581	exon2	c.G982A	p.G328R	.	.	.
ZER1	10444	hgsc.bcm.edu	36	9	130557553	130557553	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006336	exon2	c.C113T	p.P38L	.	.	.
ADAMTS13	11093	hgsc.bcm.edu	36	9	135297359	135297359	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139025	exon17	c.G1987A	p.E663K	.	.	.
PTPDC1	138639	hgsc.bcm.edu	36	9	95899957	95899957	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152422	exon6	c.C1282T	p.R428W	.	.	.
PTCH1	5727	hgsc.bcm.edu	36	9	97269446	97269446	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001083605	exon15	c.C1880T	p.T627M	PTCH1,skin,face,Substitution - coding silent,+1	.	.
DENND1A	57706	hgsc.bcm.edu	36	9	125185953	125185954	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	AC	AC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020946	exon21	c.1637_1638del	p.546_546del	.	.	.
POLR1D	51082	hgsc.bcm.edu	36	13	27095152	27095152	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015972	exon2	c.G167A	p.R56H	.	.	.
KIAA0564	23078	hgsc.bcm.edu	36	13	41305654	41305654	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015058	exon13	c.G1439A	p.R480H	.	.	.
DGKH	160851	hgsc.bcm.edu	36	13	41640607	41640607	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178009	exon10	c.C1150T	p.R384W	.	.	.
ZC3H13	23091	hgsc.bcm.edu	36	13	45460940	45460940	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015070	exon9	c.G1238A	p.R413H	.	.	.
PCDH17	27253	hgsc.bcm.edu	36	13	57104725	57104725	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040429	exon1	c.C44T	p.A15V	.	.	.
C10orf84	63877	hgsc.bcm.edu	36	10	120085068	120085068	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001134672	exon3	c.C310T	p.R104C	.	.	.
EIF3A	8661	hgsc.bcm.edu	36	10	120814924	120814924	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003750	exon7	c.C1099T	p.R367X	.	.	.
BTBD16	118663	hgsc.bcm.edu	36	10	124026345	124026345	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144587	exon3	c.G68A	p.R23H	.	.	.
FANK1	92565	hgsc.bcm.edu	36	10	127687025	127687025	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145235	exon8	c.G765A	p.S255S	.	.	.
C10orf90	118611	hgsc.bcm.edu	36	10	128192493	128192493	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004298	exon2	c.C28T	p.R10W	.	.	.
MKI67	4288	hgsc.bcm.edu	36	10	129789548	129789548	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145966	exon13	c.G8589T	p.T2863T	.	.	.
HSPA14	51182	hgsc.bcm.edu	36	10	14936247	14936247	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016299	exon9	c.A852G	p.S284S	.	.	.
CUBN	8029	hgsc.bcm.edu	36	10	16910811	16910811	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001081	exon66	c.G10763T	p.G3588V	.	.	.
SPAG6	9576	hgsc.bcm.edu	36	10	22697528	22697528	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012443	exon4	c.G387A	p.T129T	.	.	.
ERCC6	2074	hgsc.bcm.edu	36	10	50354311	50354311	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000124	exon12	c.G2338A	p.V780I	.	.	.
PRKG1	5592	hgsc.bcm.edu	36	10	53711923	53711923	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006258	exon14	c.A1550G	p.D517G	.	.	.
FBXO18	84893	hgsc.bcm.edu	36	10	6018488	6018488	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032807	exon21	c.G3046A	p.V1016M	.	.	.
ANK3	288	hgsc.bcm.edu	36	10	61819205	61819205	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020987	exon1	c.G98A	p.R33Q	.	.	.
VCL	7414	hgsc.bcm.edu	36	10	75530767	75530767	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014000	exon14	c.C1928T	p.T643M	.	.	.
MYST4	23522	hgsc.bcm.edu	36	10	76459088	76459088	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012330	exon18	c.C4500T	p.P1500P	.	.	.
MYST4	23522	hgsc.bcm.edu	36	10	76459423	76459423	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012330	exon18	c.G4835A	p.R1612H	.	.	.
DUSP13	51207	hgsc.bcm.edu	36	10	76531669	76531669	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001007273	exon3	c.G240A	p.P80P	.	.	.
KCNMA1	3778	hgsc.bcm.edu	36	10	78399815	78399815	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001161353	exon19	c.G2109A	p.P703P	.	.	.
GRID1	2894	hgsc.bcm.edu	36	10	87665973	87665973	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017551	exon5	c.G730A	p.V244M	.	.	.
TLL2	7093	hgsc.bcm.edu	36	10	98162990	98162990	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012465	exon8	c.C997T	p.R333W	.	.	.
PI4K2A	55361	hgsc.bcm.edu	36	10	99416267	99416267	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018425	exon7	c.G1167A	p.S389S	.	.	.
APC	324	hgsc.bcm.edu	36	5	112205326	112205326	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.G6082A	p.A2028T	.	.	.
REEP5	7905	hgsc.bcm.edu	36	5	112242430	112242430	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005669	exon5	c.G522A	p.A174A	.	.	.
FBN2	2201	hgsc.bcm.edu	36	5	127701695	127701695	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001999	exon27	c.G3491A	p.R1164H	.	.	.
FBN2	2201	hgsc.bcm.edu	36	5	127756758	127756758	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001999	exon10	c.C1434T	p.A478A	.	.	.
RAPGEF6	51735	hgsc.bcm.edu	36	5	130873986	130873986	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164387	exon8	c.G725A	p.R242Q	.	.	.
RAD50	10111	hgsc.bcm.edu	36	5	131981789	131981789	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005732	exon21	c.G3293A	p.R1098Q	.	.	.
TCF7	6932	hgsc.bcm.edu	36	5	133502612	133502612	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003202	exon5	c.C619A	p.P207T	.	.	.
CXCL14	9547	hgsc.bcm.edu	36	5	134938201	134938201	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004887	exon3	c.C280T	p.R94C	.	.	.
JAKMIP2	9832	hgsc.bcm.edu	36	5	147020721	147020721	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014790	exon3	c.C610T	p.R204W	.	.	.
FBXO38	81545	hgsc.bcm.edu	36	5	147776870	147776870	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_205836	exon12	c.G1528A	p.D510N	.	.	.
GRPEL2	134266	hgsc.bcm.edu	36	5	148708128	148708128	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152407	exon2	c.C178T	p.R60X	.	.	.
RBM22	55696	hgsc.bcm.edu	36	5	150056378	150056378	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018047	exon6	c.G455A	p.R152Q	.	.	.
FAT2	2196	hgsc.bcm.edu	36	5	150925805	150925805	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001447	exon1	c.C2881T	p.R961X	.	.	.
DOCK2	1794	hgsc.bcm.edu	36	5	169393998	169393998	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004946	exon35	c.C3485T	p.A1162V	.	.	.
DOCK2	1794	hgsc.bcm.edu	36	5	169405435	169405435	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004946	exon39	c.C3914T	p.A1305V	.	.	.
KCNIP1	30820	hgsc.bcm.edu	36	5	170092475	170092475	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001034838	exon6	c.G556A	p.V186I	.	.	.
STK10	6793	hgsc.bcm.edu	36	5	171456050	171456050	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005990	exon8	c.C990T	p.A330A	.	.	.
CDH12	1010	hgsc.bcm.edu	36	5	21878090	21878090	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004061	exon8	c.G751A	p.G251R	.	.	.
TTC33	23548	hgsc.bcm.edu	36	5	40782682	40782682	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012382	exon2	c.G196T	p.G66X	.	.	.
MGC42105	167359	hgsc.bcm.edu	36	5	43281849	43281849	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153361	exon2	c.G215A	p.G72D	.	.	.
NNT	23530	hgsc.bcm.edu	36	5	43648886	43648886	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182977	exon3	c.G271A	p.V91M	.	.	.
NLN	57486	hgsc.bcm.edu	36	5	65141241	65141241	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020726	exon10	c.C1671T	p.D557D	.	.	.
SRD5A1	6715	hgsc.bcm.edu	36	5	6705109	6705109	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001047	exon2	c.C448T	p.R150C	.	.	.
PLEKHA9	51054	hgsc.bcm.edu	36	12	43853360	43853360	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3554-01A-01W-0833-10	TCGA-AA-3554-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	.	.	.	.	.	.	.