Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
SND1	27044	hgsc.bcm.edu	36	7	127508771	127508771	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014390	exon18	c.G2092A	p.V698M	.	.	.
C20orf197	284756	hgsc.bcm.edu	36	20	58079107	58079107	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173644	exon4	c.G130A	p.G44S	.	.	.
LILRB1	10859	hgsc.bcm.edu	36	19	59838829	59838829	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001081639	exon13	c.T1607C	p.V536A	.	.	.
KIR3DL3	115653	hgsc.bcm.edu	36	19	59933023	59933023	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_153443	exon5	c.C908T	p.A303V	.	.	.
C3	718	hgsc.bcm.edu	36	19	6637184	6637184	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000064	exon29	c.G3761A	p.R1254H	.	.	.
PLAG1	5324	hgsc.bcm.edu	36	8	57242043	57242043	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114635	exon3	c.A570G	p.L190L	.	.	.
SLCO5A1	81796	hgsc.bcm.edu	36	8	70779843	70779843	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030958	exon6	c.C1599T	p.G533G	.	.	.
WDR21C	138009	hgsc.bcm.edu	36	8	88954159	88954159	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152418	exon1	c.G1157A	p.R386Q	.	.	.
OLFM3	118427	hgsc.bcm.edu	36	1	102068920	102068920	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_058170	exon3	c.G268T	p.D90Y	.	.	.
ADAR	103	hgsc.bcm.edu	36	1	152828884	152828884	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015841	exon8	c.A2506G	p.M836V	.	.	.
FAM5C	339479	hgsc.bcm.edu	36	1	188333894	188333894	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199051	exon8	c.C2178T	p.C726C	.	.	.
ZNF362	149076	hgsc.bcm.edu	36	1	33533181	33533181	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152493	exon7	c.T965C	p.F322S	.	.	.
THRAP3	9967	hgsc.bcm.edu	36	1	36529643	36529643	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005119	exon6	c.C1827T	p.S609S	.	.	.
GTF2H1	2965	hgsc.bcm.edu	36	11	18336078	18336078	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001142307	exon13	c.C1264T	p.L422F	.	.	.
CAPRIN1	4076	hgsc.bcm.edu	36	11	34077428	34077428	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005898	exon19	c.C2068T	p.R690C	.	.	.
PIWIL4	143689	hgsc.bcm.edu	36	11	93992629	93992629	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152431	exon18	c.G2224A	p.E742K	.	.	.
KCTD20	222658	hgsc.bcm.edu	36	6	36550799	36550799	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173562	exon3	c.C416T	p.P139L	.	.	.
KRT33B	3884	hgsc.bcm.edu	36	17	36775297	36775297	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002279	exon4	c.G623A	p.R208H	.	.	.
CCDC101	112869	hgsc.bcm.edu	36	16	28503790	28503790	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_138414	exon3	c.G131A	p.R44Q	.	.	.
HCLS1	3059	hgsc.bcm.edu	36	3	122838756	122838758	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	CTC	CTC	CTC	-	CTC	CTC	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005335	exon7	c.490_492del	p.164_164del	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004985	exon2	c.G35A	p.G12D	KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0	.	.
SYT10	341359	hgsc.bcm.edu	36	12	33426594	33426594	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198992	exon5	c.G1327A	p.V443M	.	.	.
LUM	4060	hgsc.bcm.edu	36	12	90022146	90022146	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002345	exon3	c.G944A	p.R315H	.	.	.
APAF1	317	hgsc.bcm.edu	36	12	97585436	97585436	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013229	exon10	c.G1344A	p.K448K	.	.	.
ZNF609	23060	hgsc.bcm.edu	36	15	62753475	62753475	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015042	exon4	c.T1369G	p.S457A	.	.	.
HCN4	10021	hgsc.bcm.edu	36	15	71409153	71409153	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005477	exon4	c.G1404A	p.A468A	.	.	.
ARAP2	116984	hgsc.bcm.edu	36	4	35761396	35761396	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015230	exon29	c.G4497A	p.K1499K	.	.	.
SCARB2	950	hgsc.bcm.edu	36	4	77308598	77308598	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005506	exon9	c.A1169G	p.K390R	.	.	.
UTP14A	10813	hgsc.bcm.edu	36	X	128873483	128873483	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006649	exon6	c.G442A	p.V148I	.	.	.
SLITRK4	139065	hgsc.bcm.edu	36	X	142545980	142545980	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173078	exon2	c.G611A	p.R204H	.	.	.
FAM123B	139285	hgsc.bcm.edu	36	X	63328820	63328820	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152424	exon2	c.C1072T	p.R358X	.	.	.
BRWD3	254065	hgsc.bcm.edu	36	X	79833254	79833254	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_153252	exon31	c.A3556C	p.T1186P	.	.	.
FLT1	2321	hgsc.bcm.edu	36	13	27877917	27877917	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002019	exon11	c.G1551A	p.K517K	.	.	.
PKD2L1	9033	hgsc.bcm.edu	36	10	102046779	102046779	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_016112	exon6	c.G1133A	p.R378Q	.	.	.
PIK3AP1	118788	hgsc.bcm.edu	36	10	98359586	98359586	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152309	exon14	c.C2043T	p.H681H	.	.	.
APC	324	hgsc.bcm.edu	36	5	112201603	112201603	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.C2359T	p.R787X	APC,large_intestine,right,Substitution - Nonsense,0	.	.
PCDHA2	56146	hgsc.bcm.edu	36	5	140156545	140156545	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018905	exon1	c.C1812T	p.N604N	.	.	.
PCDHAC2	56134	hgsc.bcm.edu	36	5	140328742	140328742	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018899	exon1	c.C2207T	p.A736V	.	.	.
DOCK2	1794	hgsc.bcm.edu	36	5	169041363	169041363	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004946	exon7	c.G508A	p.G170R	.	.	.
RXFP3	51289	hgsc.bcm.edu	36	5	33972939	33972939	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3548-01A-01W-0831-10	TCGA-AA-3548-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_016568	exon1	c.C337T	p.R113C	.	.	.