Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
IRF5	3663	hgsc.bcm.edu	36	7	128374330	128374330	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001098627	exon5	c.A465T	p.P155P	.	.	.
BBS9	27241	hgsc.bcm.edu	36	7	33364080	33364080	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001033605	exon15	c.A1626T	p.K542N	.	.	.
HERPUD2	64224	hgsc.bcm.edu	36	7	35640498	35640498	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_022373	exon8	c.C1008T	p.A336A	.	.	.
SLC7A8	23428	hgsc.bcm.edu	36	14	22678484	22678484	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_182728	exon4	c.G292A	p.A98T	.	.	.
IRF9	10379	hgsc.bcm.edu	36	14	23704952	23704952	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006084	exon8	c.A1048C	p.N350H	.	.	.
MLH3	27030	hgsc.bcm.edu	36	14	74578921	74578921	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001040108	exon3	c.G3293A	p.R1098K	.	.	.
GAB4	128954	hgsc.bcm.edu	36	22	15829261	15829261	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001037814	exon5	c.A950T	p.K317M	.	.	.
RBM42	79171	hgsc.bcm.edu	36	19	40820254	40820254	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024321	exon10	c.C1401G	p.V467V	.	.	.
ZFP14	57677	hgsc.bcm.edu	36	19	41524306	41524306	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020917	exon5	c.A262G	p.T88A	.	.	.
LGALS14	56891	hgsc.bcm.edu	36	19	44889118	44889118	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020129	exon2	c.C57T	p.C19C	.	.	.
SHANK1	50944	hgsc.bcm.edu	36	19	55909358	55909358	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_016148	exon4	c.C533T	p.T178M	.	.	.
NLRP8	126205	hgsc.bcm.edu	36	19	61157810	61157810	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_176811	exon3	c.C574A	p.L192M	.	.	.
ASAP1	50807	hgsc.bcm.edu	36	8	131248993	131248993	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018482	exon10	c.A880T	p.K294X	.	.	.
DENND3	22898	hgsc.bcm.edu	36	8	142260109	142260109	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014957	exon17	c.C2678T	p.A893V	.	.	.
RDH10	157506	hgsc.bcm.edu	36	8	74395727	74395727	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_172037	exon4	c.T631C	p.C211R	.	.	.
UQCRB	7381	hgsc.bcm.edu	36	8	97316920	97316920	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006294	exon1	c.G15A	p.Q5Q	.	.	.
CELSR2	1952	hgsc.bcm.edu	36	1	109616437	109616437	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001408	exon29	c.C7941G	p.P2647P	.	.	.
CELSR2	1952	hgsc.bcm.edu	36	1	109616440	109616440	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001408	exon29	c.C7944T	p.S2648S	.	.	.
KCNT2	343450	hgsc.bcm.edu	36	1	194569705	194569705	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198503	exon17	c.C1892A	p.P631H	.	.	.
C1orf131	128061	hgsc.bcm.edu	36	1	229441326	229441326	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152379	exon2	c.C350T	p.P117L	.	.	.
CYP2J2	1573	hgsc.bcm.edu	36	1	60150500	60150500	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000775	exon3	c.G445C	p.G149R	.	.	.
LRRIQ3	127255	hgsc.bcm.edu	36	1	74421778	74421778	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001105659	exon2	c.A179T	p.N60I	.	.	.
SNX19	399979	hgsc.bcm.edu	36	11	130254801	130254801	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014758	exon10	c.T2774A	p.I925N	.	.	.
CARS	833	hgsc.bcm.edu	36	11	2995078	2995080	+	In_Frame_Del	DEL	ATT	ATT	-	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	ATT	ATT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001014437	exon16	c.1749_1751del	p.583_584del	.	.	.
TCP11	6954	hgsc.bcm.edu	36	6	35198058	35198058	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001093728	exon5	c.G431A	p.R144H	.	.	.
AOC2	314	hgsc.bcm.edu	36	17	38251015	38251015	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001158	exon1	c.G846C	p.V282V	.	.	.
DNAH3	55567	hgsc.bcm.edu	36	16	21044180	21044180	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017539	exon9	c.C1221G	p.T407T	.	.	.
MORC1	27136	hgsc.bcm.edu	36	3	110160508	110160508	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014429	exon28	c.A2949C	p.E983D	.	.	.
WWTR1	25937	hgsc.bcm.edu	36	3	150773463	150773463	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015472	exon3	c.T446A	p.I149N	.	.	.
TRIM59	286827	hgsc.bcm.edu	36	3	161639521	161639521	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173084	exon3	c.C145T	p.P49S	.	.	.
FBXL2	25827	hgsc.bcm.edu	36	3	33375464	33375464	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001171713	exon3	c.A67G	p.I23V	.	.	.
TCTA	6988	hgsc.bcm.edu	36	3	49427272	49427272	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022171	exon3	c.C285T	p.N95N	.	.	.
IQCD	115811	hgsc.bcm.edu	36	12	112117899	112117899	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_138451	exon3	c.C908T	p.T303M	.	.	.
KLRB1	3820	hgsc.bcm.edu	36	12	9641932	9641932	+	Silent	SNP	G	G	A	rs34291189	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002258	exon5	c.C507T	p.N169N	.	.	.
UBR1	197131	hgsc.bcm.edu	36	15	41057420	41057420	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_174916	exon38	c.A4168G	p.K1390E	.	.	.
LDB2	9079	hgsc.bcm.edu	36	4	16122707	16122707	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001130834	exon6	c.C734T	p.P245L	.	.	.
TBC1D8B	54885	hgsc.bcm.edu	36	X	105950804	105950804	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198881	exon3	c.G283A	p.E95K	.	.	.
MCF2	4168	hgsc.bcm.edu	36	X	138541251	138541251	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001099855	exon6	c.A437T	p.Y146F	.	.	.
PHKA2	5256	hgsc.bcm.edu	36	X	18834817	18834817	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000292	exon24	c.C2634T	p.Y878Y	.	.	.
CXorf58	254158	hgsc.bcm.edu	36	X	23844332	23844332	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152761	exon5	c.T389C	p.F130S	.	.	.
TMEM163	81615	hgsc.bcm.edu	36	2	135024644	135024644	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_030923	exon4	c.C425T	p.A142V	.	.	.
ARMC9	80210	hgsc.bcm.edu	36	2	231808308	231808308	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025139	exon8	c.T750C	p.D250D	.	.	.
CCDC70	83446	hgsc.bcm.edu	36	13	51337683	51337683	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_031290	exon2	c.A168C	p.K56N	.	.	.
ITIH2	3698	hgsc.bcm.edu	36	10	7813932	7813932	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002216	exon13	c.G1614A	p.L538L	.	.	.
APC	324	hgsc.bcm.edu	36	5	112202005	112202005	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127511	exon14	c.A2761T	p.K921X	.	.	.
AMACR	23600	hgsc.bcm.edu	36	5	34034580	34034580	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3538-01A-01W-0831-10	TCGA-AA-3538-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001167596	exon4	c.C662T	p.T221M	.	.	.