Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
KEL	3792	hgsc.bcm.edu	36	7	142350091	142350091	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000420	exon17	c.C1934T	p.A645V	.	.	.
WBSCR17	64409	hgsc.bcm.edu	36	7	70813782	70813782	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_022479	exon10	c.G1601A	p.R534Q	.	.	.
LMTK2	22853	hgsc.bcm.edu	36	7	97660395	97660395	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014916	exon11	c.G2682A	p.L894L	.	.	.
AKAP6	9472	hgsc.bcm.edu	36	14	32361496	32361496	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	T	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004274	exon13	c.G4726T	p.D1576Y	.	.	.
EFCAB6	64800	hgsc.bcm.edu	36	22	42359390	42359390	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198856	exon17	c.C1704T	p.Y568Y	.	.	.
GNB1L	54584	hgsc.bcm.edu	36	22	18156328	18156328	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_053004	exon8	c.C888A	p.A296A	GNB1L,breast,NS,Substitution - Missense,-2	.	.
VAV1	7409	hgsc.bcm.edu	36	19	6799082	6799082	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005428	exon23	c.C2086T	p.R696W	.	.	.
EIF3E	3646	hgsc.bcm.edu	36	8	109297842	109297842	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001568	exon9	c.A926T	p.Q309L	.	.	.
ADAM7	8756	hgsc.bcm.edu	36	8	24420898	24420898	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003817	exon21	c.G2224T	p.D742Y	.	.	.
STAR	6770	hgsc.bcm.edu	36	8	38123057	38123057	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000349	exon4	c.C372T	p.V124V	.	.	.
NOTCH2	4853	hgsc.bcm.edu	36	1	120313779	120313779	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024408	exon6	c.G986T	p.G329V	.	.	.
HAPLN2	60484	hgsc.bcm.edu	36	1	154861644	154861644	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021817	exon7	c.G867T	p.Q289H	.	.	.
FAM5B	57795	hgsc.bcm.edu	36	1	175516417	175516417	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_021165	exon8	c.G1482A	p.E494E	.	.	.
ACTN2	88	hgsc.bcm.edu	36	1	234969438	234969438	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001103	exon10	c.G1090A	p.E364K	.	.	.
ACTN2	88	hgsc.bcm.edu	36	1	234974662	234974662	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001103	exon12	c.C1369T	p.R457C	.	.	.
HIVEP3	59269	hgsc.bcm.edu	36	1	41819656	41819656	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024503	exon4	c.C3400T	p.H1134Y	.	.	.
ARHGAP20	57569	hgsc.bcm.edu	36	11	109956779	109956779	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020809	exon16	c.C2101T	p.R701W	.	.	.
UPK2	7379	hgsc.bcm.edu	36	11	118332323	118332323	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006760	exon1	c.C53A	p.A18D	.	.	.
HYOU1	10525	hgsc.bcm.edu	36	11	118427465	118427465	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006389	exon13	c.G1421A	p.G474E	.	.	.
OR5M9	390162	hgsc.bcm.edu	36	11	55986531	55986531	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001004743	exon1	c.T923C	p.V308A	.	.	.
NRXN2	9379	hgsc.bcm.edu	36	11	64214493	64214493	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015080	exon5	c.C810T	p.A270A	.	.	.
DPF2	5977	hgsc.bcm.edu	36	11	64870372	64870372	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006268	exon9	c.A983C	p.K328T	.	.	.
DPF2	5977	hgsc.bcm.edu	36	11	64870399	64870399	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006268	exon9	c.A1010G	p.E337G	.	.	.
SF3B2	10992	hgsc.bcm.edu	36	11	65583957	65583957	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006842	exon13	c.C1530T	p.Y510Y	.	.	.
SCUBE2	57758	hgsc.bcm.edu	36	11	9005507	9005507	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020974	exon19	c.A2510G	p.Y837C	.	.	.
SLC22A18	5002	hgsc.bcm.edu	36	11	2899980	2899980	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002555	exon9	c.C937G	p.L313V	.	.	.
SLC6A5	9152	hgsc.bcm.edu	36	11	20632895	20632895	+	Missense_Mutation	SNP	G	G	A	rs16906628	byCluster;byFrequency;byHapMap	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004211	exon16	c.G2299A	p.G767R	.	.	.
ALDH5A1	7915	hgsc.bcm.edu	36	6	24636287	24636287	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_170740	exon9	c.C1296A	p.F432L	.	.	.
PMP22	5376	hgsc.bcm.edu	36	17	15075101	15075101	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_153322	exon4	c.C341T	p.A114V	.	.	.
HAP1	9001	hgsc.bcm.edu	36	17	37134810	37134810	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001079871	exon10	c.C1454A	p.P485H	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7518293	7518293	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon7	c.G713A	p.C238Y	TP53,oesophagus,NS,Substitution - Missense,-2	.	.
ACSM2A	123876	hgsc.bcm.edu	36	16	20394500	20394500	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010845	exon9	c.C1002T	p.C334C	.	.	.
SCNN1B	6338	hgsc.bcm.edu	36	16	23290611	23290611	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000336	exon7	c.G1058A	p.R353H	.	.	.
PMFBP1	83449	hgsc.bcm.edu	36	16	70717475	70717475	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001160213	exon16	c.C1711A	p.Q571K	.	.	.
FANCA	2175	hgsc.bcm.edu	36	16	88342666	88342666	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000135	exon33	c.C3250T	p.R1084C	.	.	.
C3orf30	152405	hgsc.bcm.edu	36	3	120348447	120348447	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152539	exon1	c.C721A	p.Q241K	.	.	.
ZIC1	7545	hgsc.bcm.edu	36	3	148611312	148611312	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003412	exon1	c.G723A	p.S241S	.	.	.
MED12L	116931	hgsc.bcm.edu	36	3	152580651	152580651	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_053002	exon30	c.A4434T	p.Q1478H	.	.	.
LAMP3	27074	hgsc.bcm.edu	36	3	184336299	184336299	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014398	exon5	c.C1017T	p.C339C	.	.	.
SCN11A	11280	hgsc.bcm.edu	36	3	38863529	38863529	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014139	exon26	c.G5036A	p.R1679H	.	.	.
MED13L	23389	hgsc.bcm.edu	36	12	115159782	115159782	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015335	exon2	c.C184T	p.R62C	.	.	.
SBNO1	55206	hgsc.bcm.edu	36	12	122348614	122348614	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018183	exon30	c.C3900T	p.C1300C	.	.	.
DDX55	57696	hgsc.bcm.edu	36	12	122667097	122667097	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020936	exon10	c.A1043G	p.N348S	.	.	.
HOXC11	3227	hgsc.bcm.edu	36	12	52655348	52655348	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014212	exon2	c.C799T	p.R267W	.	.	.
MYF6	4618	hgsc.bcm.edu	36	12	79625779	79625779	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002469	exon1	c.G150A	p.P50P	.	.	.
SNAP23	8773	hgsc.bcm.edu	36	15	40607880	40607880	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003825	exon6	c.C395T	p.T132M	.	.	.
SHC4	399694	hgsc.bcm.edu	36	15	46923015	46923015	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_203349	exon10	c.C1366T	p.R456X	.	.	.
SHC4	399694	hgsc.bcm.edu	36	15	47042085	47042085	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_203349	exon1	c.C420T	p.S140S	.	.	.
IGDCC4	57722	hgsc.bcm.edu	36	15	63474623	63474623	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020962	exon8	c.G1438T	p.A480S	.	.	.
EPB42	2038	hgsc.bcm.edu	36	15	41288205	41288205	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001114134	exon7	c.C893T	p.T298I	.	.	.
POLN	353497	hgsc.bcm.edu	36	4	2150967	2150967	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_181808	exon6	c.C1045A	p.P349T	.	.	.
GK2	2712	hgsc.bcm.edu	36	4	80548224	80548224	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033214	exon1	c.G155T	p.W52L	.	.	.
PJA1	64219	hgsc.bcm.edu	36	X	68299049	68299049	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	T	T	C	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001032396	exon2	c.A593G	p.E198G	.	.	.
NHSL2	340527	hgsc.bcm.edu	36	X	71276861	71276861	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001013627	exon6	c.C2738T	p.A913V	.	.	.
DACH2	117154	hgsc.bcm.edu	36	X	85956424	85956424	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	T	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_053281	exon10	c.C1615T	p.R539C	.	.	.
DPP10	57628	hgsc.bcm.edu	36	2	116213939	116213939	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001178036	exon10	c.G702A	p.K234K	.	.	.
LRP1B	53353	hgsc.bcm.edu	36	2	141245041	141245041	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018557	exon34	c.C5505A	p.S1835R	.	.	.
STAM2	10254	hgsc.bcm.edu	36	2	152685518	152685518	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005843	exon14	c.A1394G	p.N465S	.	.	.
TTN	7273	hgsc.bcm.edu	36	2	179355394	179355394	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_133379	exon20	c.T3170C	p.V1057A	.	.	.
PALM2-AKAP2	445815	hgsc.bcm.edu	36	9	111939955	111939955	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_147150	exon8	c.C2310T	p.G770G	.	.	.
PAPPA	5069	hgsc.bcm.edu	36	9	118154928	118154928	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002581	exon16	c.C4087T	p.R1363X	.	.	.
COL4A1	1282	hgsc.bcm.edu	36	13	109636883	109636883	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001845	exon26	c.G1747T	p.G583X	.	.	.
TRPC4	7223	hgsc.bcm.edu	36	13	37123516	37123516	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135957	exon8	c.T1965A	p.T655T	.	.	.
FREM2	341640	hgsc.bcm.edu	36	13	38160797	38160797	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_207361	exon1	c.C1316T	p.P439L	.	.	.
PCDH17	27253	hgsc.bcm.edu	36	13	57106015	57106015	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001040429	exon1	c.G1334A	p.R445Q	.	.	.
PCDH9	5101	hgsc.bcm.edu	36	13	66700289	66700289	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020403	exon2	c.A285G	p.E95E	.	.	.
GPC6	10082	hgsc.bcm.edu	36	13	93280728	93280728	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005708	exon3	c.G640A	p.A214T	.	.	.
SORCS1	114815	hgsc.bcm.edu	36	10	108448980	108448980	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_052918	exon9	c.C1395G	p.I465M	.	.	.
ANXA11	311	hgsc.bcm.edu	36	10	81908866	81908866	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145869	exon14	c.G1246A	p.G416R	.	.	.
MYO3A	53904	hgsc.bcm.edu	36	10	26425326	26425326	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_017433	exon16	c.A1573C	p.N525H	MYO3A,ovary,NS,Substitution - Missense,-2	.	.
APC	324	hgsc.bcm.edu	36	5	112156090	112156090	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127510	exon8	c.C694T	p.R232X	APC,large_intestine,NS,Substitution - Nonsense,0	.	.
APC	324	hgsc.bcm.edu	36	5	112202644	112202644	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127511	exon14	c.C3400T	p.Q1134X	.	.	.
PCDHB5	26167	hgsc.bcm.edu	36	5	140496173	140496173	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015669	exon1	c.G973A	p.G325S	.	.	.
BRD9	65980	hgsc.bcm.edu	36	5	937151	937151	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3531-01A-01W-0831-10	TCGA-AA-3531-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_023924	exon8	c.T868G	p.L290V	.	.	.