Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ABCB5	340273	hgsc.bcm.edu	36	7	20657691	20657691	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_178559	exon4	c.C121T	p.R41X	.	.	.
NEUROD6	63974	hgsc.bcm.edu	36	7	31345108	31345108	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022728	exon2	c.C300T	p.N100N	.	.	.
ELMO1	9844	hgsc.bcm.edu	36	7	37321024	37321024	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014800	exon4	c.T147C	p.F49F	.	.	.
UBE2D4	51619	hgsc.bcm.edu	36	7	43956751	43956751	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015983	exon6	c.C333T	p.C111C	.	.	.
GNAI1	2770	hgsc.bcm.edu	36	7	79678233	79678233	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002069	exon6	c.G603T	p.V201V	.	.	.
RBM12	10137	hgsc.bcm.edu	36	20	33705283	33705283	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152838	exon3	c.G1376T	p.S459I	.	.	.
DYNC1H1	1778	hgsc.bcm.edu	36	14	101563335	101563335	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001376	exon45	c.G8843A	p.R2948H	.	.	.
SAMD4A	23034	hgsc.bcm.edu	36	14	54312955	54312955	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015589	exon10	c.G1988A	p.R663H	.	.	.
TRMU	55687	hgsc.bcm.edu	36	22	45128408	45128408	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018006	exon8	c.G853A	p.V285I	.	.	.
SMARCA4	6597	hgsc.bcm.edu	36	19	10999522	10999522	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003072	exon24	c.G3278A	p.R1093Q	.	.	.
CASP14	23581	hgsc.bcm.edu	36	19	15025616	15025616	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_012114	exon4	c.G250A	p.V84M	.	.	.
NLRP8	126205	hgsc.bcm.edu	36	19	61176979	61176979	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_176811	exon7	c.G2684T	p.R895I	.	.	.
VPS13B	157680	hgsc.bcm.edu	36	8	100905303	100905303	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152564	exon51	c.C9251G	p.T3084S	.	.	.
ENPP2	5168	hgsc.bcm.edu	36	8	120644340	120644340	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001130863	exon25	c.G2434A	p.G812S	.	.	.
FAM135B	51059	hgsc.bcm.edu	36	8	139232867	139232867	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015912	exon13	c.G3033T	p.G1011G	.	.	.
RAB2A	5862	hgsc.bcm.edu	36	8	61695870	61695870	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002865	exon8	c.C627T	p.G209G	.	.	.
GOLPH3L	55204	hgsc.bcm.edu	36	1	148887687	148887687	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018178	exon5	c.C592T	p.R198X	.	.	.
CAPN2	824	hgsc.bcm.edu	36	1	222003441	222003441	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001748	exon6	c.C807T	p.A269A	.	.	.
ZNF669	79862	hgsc.bcm.edu	36	1	245330493	245330493	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024804	exon4	c.C1201T	p.R401C	.	.	.
SGIP1	84251	hgsc.bcm.edu	36	1	66920397	66920397	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032291	exon15	c.A1072C	p.T358P	.	.	.
CYP2J2	1573	hgsc.bcm.edu	36	1	60154234	60154234	+	Missense_Mutation	SNP	C	C	T	rs11572242	byCluster;byFrequency;byHapMap	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000775	exon2	c.G337A	p.V113M	.	.	.
SAAL1	113174	hgsc.bcm.edu	36	11	18068581	18068581	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_138421	exon5	c.C449T	p.P150L	.	.	.
CPSF7	79869	hgsc.bcm.edu	36	11	60935038	60935038	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001136040	exon9	c.C1369T	p.R457W	.	.	.
INPPL1	3636	hgsc.bcm.edu	36	11	71622163	71622163	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001567	exon18	c.C2071T	p.R691W	.	.	.
CDC40	51362	hgsc.bcm.edu	36	6	110640985	110640985	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015891	exon8	c.G871A	p.V291I	.	.	.
GRM1	2911	hgsc.bcm.edu	36	6	146796950	146796950	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000838	exon9	c.G2910A	p.P970P	.	.	.
POLR2A	5430	hgsc.bcm.edu	36	17	7347198	7347198	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000937	exon17	c.C2791T	p.R931W	.	.	.
KRTAP19-5	337972	hgsc.bcm.edu	36	21	30796235	30796235	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_181611	exon1	c.C45T	p.Y15Y	.	.	.
CMTM4	146223	hgsc.bcm.edu	36	16	65227875	65227875	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_181521	exon2	c.C297T	p.G99G	.	.	.
NECAB2	54550	hgsc.bcm.edu	36	16	82581677	82581677	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_019065	exon6	c.G537A	p.S179S	.	.	.
IMPA2	3613	hgsc.bcm.edu	36	18	12018083	12018083	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014214	exon6	c.C532T	p.R178C	.	.	.
LAMA3	3909	hgsc.bcm.edu	36	18	19748442	19748442	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127718	exon19	c.G2405A	p.R802H	.	.	.
RIT2	6014	hgsc.bcm.edu	36	18	38577461	38577461	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002930	exon5	c.A649G	p.T217A	.	.	.
DSEL	92126	hgsc.bcm.edu	36	18	63331197	63331197	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032160	exon2	c.C1659A	p.A553A	.	.	.
PTPRM	5797	hgsc.bcm.edu	36	18	8396135	8396135	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002845	exon31	c.C4334A	p.A1445D	.	.	.
XRN1	54464	hgsc.bcm.edu	36	3	143586171	143586171	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_019001	exon21	c.G2386T	p.V796L	.	.	.
DUSP7	1849	hgsc.bcm.edu	36	3	52059888	52059888	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001947	exon3	c.A1243T	p.T415S	.	.	.
CACNA1D	776	hgsc.bcm.edu	36	3	53510751	53510751	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001128839	exon3	c.C447T	p.F149F	.	.	.
CNTN3	5067	hgsc.bcm.edu	36	3	74466724	74466724	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020872	exon12	c.C1520A	p.S507Y	.	.	.
PFKM	5213	hgsc.bcm.edu	36	12	46825752	46825752	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001166686	exon25	c.C2550T	p.A850A	.	.	.
FAT4	79633	hgsc.bcm.edu	36	4	126556176	126556176	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024582	exon5	c.G6608A	p.R2203Q	.	.	.
TLR3	7098	hgsc.bcm.edu	36	4	187240586	187240586	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003265	exon4	c.G752A	p.R251Q	.	.	.
C4orf26	152816	hgsc.bcm.edu	36	4	76708441	76708441	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_178497	exon2	c.C161T	p.P54L	.	.	.
COPS4	51138	hgsc.bcm.edu	36	4	84215476	84215476	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016129	exon10	c.C1090T	p.R364X	.	.	.
FRMPD4	9758	hgsc.bcm.edu	36	X	12067050	12067050	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014728	exon1	c.G39A	p.S13S	.	.	.
PRPS2	5634	hgsc.bcm.edu	36	X	12748807	12748807	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001039091	exon6	c.G837T	p.P279P	.	.	.
SMARCA1	6594	hgsc.bcm.edu	36	X	128458462	128458462	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003069	exon12	c.G1572A	p.W524X	.	.	.
CD40LG	959	hgsc.bcm.edu	36	X	135558224	135558224	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000074	exon1	c.G151C	p.D51H	.	.	.
GPR64	10149	hgsc.bcm.edu	36	X	18941777	18941777	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001184837	exon14	c.C957T	p.T319T	.	.	.
SLC9A7	84679	hgsc.bcm.edu	36	X	46387640	46387640	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032591	exon12	c.C1588T	p.P530S	.	.	.
CLCN5	1184	hgsc.bcm.edu	36	X	49742075	49742075	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001127899	exon14	c.C2152T	p.R718X	.	.	.
POLR1B	84172	hgsc.bcm.edu	36	2	113038416	113038416	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001137604	exon9	c.G1447A	p.V483I	.	.	.
IL1RN	3557	hgsc.bcm.edu	36	2	113601740	113601740	+	Missense_Mutation	SNP	C	C	T	rs55860727	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000577	exon2	c.C14T	p.T5M	.	.	.
SESTD1	91404	hgsc.bcm.edu	36	2	179690563	179690563	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_178123	exon14	c.C1465T	p.R489X	.	.	.
APOB	338	hgsc.bcm.edu	36	2	21085892	21085892	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000384	exon26	c.T7353C	p.N2451N	.	.	.
PASK	23178	hgsc.bcm.edu	36	2	241696338	241696338	+	Missense_Mutation	SNP	G	G	A	rs41266953	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_015148	exon16	c.C3584T	p.T1195M	.	.	.
COL15A1	1306	hgsc.bcm.edu	36	9	100868997	100868997	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001855	exon40	c.G3664T	p.A1222S	.	.	.
RFXAP	5994	hgsc.bcm.edu	36	13	36292020	36292022	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	AAG	AAG	AAG	-	AAG	AAG	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_000538	exon1	c.526_528del	p.176_176del	.	.	.
SUPV3L1	6832	hgsc.bcm.edu	36	10	70638682	70638682	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003171	exon15	c.A2246G	p.K749R	.	.	.
GRID1	2894	hgsc.bcm.edu	36	10	87472779	87472779	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_017551	exon12	c.C1958A	p.A653D	.	.	.
MYO3A	53904	hgsc.bcm.edu	36	10	26425326	26425326	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	A	A	A	A	A	A	Unknown	Wildtype	None	Phase_I	Capture	454			SOLID	NM_017433	exon16	c.A1573C	p.N525H	MYO3A,ovary,NS,Substitution - Missense,-2	.	.
SLC25A2	83884	hgsc.bcm.edu	36	5	140662756	140662756	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_031947	exon1	c.C861T	p.Y287Y	.	.	.
NDUFS6	4726	hgsc.bcm.edu	36	5	1867513	1867513	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3529-01A-02W-0831-10	TCGA-AA-3529-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004553	exon3	c.C247T	p.R83W	.	.	.