Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
PLOD1	5351	hgsc.bcm.edu	36	1	11946871	11946872	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000302	exon12	c.1255_1256insG	p.W419fs	.	.	.
VANGL2	57216	hgsc.bcm.edu	36	1	158655425	158655426	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020335	exon4	c.202_203insG	p.W68fs	.	.	.
MRGPRD	116512	hgsc.bcm.edu	36	11	68504744	68504745	+	Frame_Shift_Ins	INS	-	-	TT	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198923	exon1	c.288_289insAA	p.K96fs	.	.	.
ADNP2	22850	hgsc.bcm.edu	36	18	75995251	75995252	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014913	exon4	c.964_965insC	p.S322fs	.	.	.
ACVR2B	93	hgsc.bcm.edu	36	3	38497933	38497934	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001106	exon8	c.1047_1048insA	p.G349fs	.	.	.
SUOX	6821	hgsc.bcm.edu	36	12	54683797	54683798	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001032386	exon5	c.357_358insG	p.P119fs	.	.	.
RAB21	23011	hgsc.bcm.edu	36	12	70450705	70450706	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014999	exon3	c.286_287insT	p.I96fs	.	.	.
OPHN1	4983	hgsc.bcm.edu	36	X	67209774	67209775	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002547	exon20	c.1779_1780insA	p.K593fs	.	.	.
IFNA5	3442	hgsc.bcm.edu	36	9	21294905	21294906	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002169	exon1	c.351_352insA	p.N117fs	.	.	.
MLNR	2862	hgsc.bcm.edu	36	13	48694330	48694331	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001507	exon2	c.1055_1056insA	p.P352fs	.	.	.
DNMBP	23268	hgsc.bcm.edu	36	10	101706755	101706756	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015221	exon4	c.466_467insG	p.L156fs	.	.	.
ANK3	288	hgsc.bcm.edu	36	10	61499979	61499980	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020987	exon37	c.10666_10667insT	p.D3556_S3557delinsX	.	.	.
ITGA2	3673	hgsc.bcm.edu	36	5	52401730	52401731	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002203	exon17	c.2118_2119insT	p.G706fs	.	.	.
SRRT	51593	hgsc.bcm.edu	36	7	100319698	100319698	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001128852	exon6	c.G659A	p.R220Q	.	.	.
MUC17	140453	hgsc.bcm.edu	36	7	100462099	100462099	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040105	exon3	c.G682A	p.V228M	.	.	.
MUC17	140453	hgsc.bcm.edu	36	7	100473497	100473497	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040105	exon3	c.C12080T	p.T4027M	.	.	.
RABL5	64792	hgsc.bcm.edu	36	7	100745249	100745249	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001130820	exon4	c.A354G	p.S118S	.	.	.
LRWD1	222229	hgsc.bcm.edu	36	7	101900457	101900457	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152892	exon15	c.G1900A	p.A634T	.	.	.
SLC26A5	375611	hgsc.bcm.edu	36	7	102805325	102805325	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_206883	exon18	c.A1943G	p.Q648R	.	.	.
RELN	5649	hgsc.bcm.edu	36	7	102994012	102994012	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005045	exon33	c.G4831C	p.D1611H	.	.	.
CFTR	1080	hgsc.bcm.edu	36	7	117019747	117019747	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000492	exon14	c.C2290T	p.R764X	.	.	.
CTTNBP2	83992	hgsc.bcm.edu	36	7	117219996	117219996	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033427	exon4	c.C490T	p.R164C	.	.	.
PTPRZ1	5803	hgsc.bcm.edu	36	7	121411056	121411056	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002851	exon7	c.A721G	p.T241A	.	.	.
GPR37	2861	hgsc.bcm.edu	36	7	124191777	124191777	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005302	exon1	c.C490T	p.R164C	.	.	.
ZNF800	168850	hgsc.bcm.edu	36	7	126801534	126801534	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_176814	exon5	c.C1092G	p.C364W	.	.	.
IMPDH1	3614	hgsc.bcm.edu	36	7	127828313	127828313	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000883	exon6	c.G496A	p.A166T	.	.	.
SVOPL	136306	hgsc.bcm.edu	36	7	137984353	137984353	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_174959	exon4	c.C148T	p.R50C	.	.	.
ADCK2	90956	hgsc.bcm.edu	36	7	140025545	140025545	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052853	exon3	c.C1202T	p.T401M	.	.	.
BRAF	673	hgsc.bcm.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004333	exon15	c.T1799A	p.V600E	BRAF,pituitary,NS,Substitution - Missense,0	.	.
TAS2R3	50831	hgsc.bcm.edu	36	7	141110655	141110655	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016943	exon1	c.T228C	p.H76H	.	.	.
CNTNAP2	26047	hgsc.bcm.edu	36	7	147231726	147231726	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014141	exon14	c.C2235T	p.C745C	.	.	.
CUL1	8454	hgsc.bcm.edu	36	7	148095653	148095653	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003592	exon9	c.G962A	p.R321H	.	.	.
EZH2	2146	hgsc.bcm.edu	36	7	148139686	148139686	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152998	exon15	c.G1779A	p.V593V	.	.	.
SMARCD3	6604	hgsc.bcm.edu	36	7	150570526	150570526	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003078	exon6	c.C514T	p.R172W	.	.	.
PTPRN2	5799	hgsc.bcm.edu	36	7	157106889	157106889	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_130843	exon14	c.C2183T	p.A728V	.	.	.
MACC1	346389	hgsc.bcm.edu	36	7	20165739	20165739	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182762	exon5	c.C770A	p.P257Q	.	.	.
OSBPL3	26031	hgsc.bcm.edu	36	7	24840738	24840738	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145321	exon14	c.G1530A	p.P510P	.	.	.
NOD1	10392	hgsc.bcm.edu	36	7	30452322	30452322	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006092	exon9	c.G2413A	p.A805T	.	.	.
AVL9	23080	hgsc.bcm.edu	36	7	32579432	32579432	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015060	exon12	c.C1447T	p.H483Y	.	.	.
TXNDC3	51314	hgsc.bcm.edu	36	7	37869570	37869570	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016616	exon8	c.A435C	p.E145D	.	.	.
TXNDC3	51314	hgsc.bcm.edu	36	7	37900637	37900637	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016616	exon16	c.C1444T	p.Q482X	.	.	.
CDC2L5	8621	hgsc.bcm.edu	36	7	39994036	39994036	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003718	exon2	c.A1525G	p.T509A	.	.	.
SDK1	221935	hgsc.bcm.edu	36	7	4023351	4023351	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152744	exon17	c.G2443A	p.G815R	.	.	.
C7orf25	79020	hgsc.bcm.edu	36	7	42915769	42915769	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024054	exon2	c.G1256A	p.S419N	.	.	.
MRPL32	64983	hgsc.bcm.edu	36	7	42941202	42941202	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031903	exon2	c.G254A	p.R85H	.	.	.
OGDH	4967	hgsc.bcm.edu	36	7	44630636	44630636	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001003941	exon2	c.T169A	p.Y57N	.	.	.
FOXK1	221937	hgsc.bcm.edu	36	7	4763160	4763160	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001037165	exon5	c.C1060T	p.R354W	.	.	.
SUNC1	256979	hgsc.bcm.edu	36	7	48012105	48012105	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152782	exon7	c.C563A	p.A188D	.	.	.
WBSCR17	64409	hgsc.bcm.edu	36	7	70491259	70491259	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022479	exon3	c.C525T	p.A175A	.	.	.
GTF2IRD1	9569	hgsc.bcm.edu	36	7	73565121	73565121	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005685	exon3	c.C149T	p.A50V	.	.	.
DLX5	1749	hgsc.bcm.edu	36	7	96491553	96491553	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005221	exon1	c.G319A	p.A107T	.	.	.
PDAP1	11333	hgsc.bcm.edu	36	7	98833433	98833433	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014891	exon5	c.G475T	p.E159X	.	.	.
ZKSCAN1	7586	hgsc.bcm.edu	36	7	99469632	99469632	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003439	exon6	c.G1568A	p.G523D	.	.	.
TAF6	6878	hgsc.bcm.edu	36	7	99549305	99549305	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005641	exon4	c.G267T	p.Q89H	.	.	.
DEFB129	140881	hgsc.bcm.edu	36	20	157957	157957	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080831	exon2	c.A97G	p.R33G	.	.	.
SNRPB2	6629	hgsc.bcm.edu	36	20	16665933	16665933	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003092	exon4	c.G265T	p.D89Y	.	.	.
RRBP1	6238	hgsc.bcm.edu	36	20	17545451	17545451	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042576	exon22	c.G2494A	p.V832I	.	.	.
SNX5	27131	hgsc.bcm.edu	36	20	17881235	17881235	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152227	exon6	c.A509G	p.Q170R	.	.	.
CRNKL1	51340	hgsc.bcm.edu	36	20	19976526	19976526	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016652	exon6	c.C988T	p.R330W	.	.	.
PTPRA	5786	hgsc.bcm.edu	36	20	2964247	2964247	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080840	exon20	c.A1910G	p.Y637C	.	.	.
XKR7	343702	hgsc.bcm.edu	36	20	30019838	30019838	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001011718	exon1	c.T199C	p.F67L	.	.	.
C20orf185	359710	hgsc.bcm.edu	36	20	31108150	31108150	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182658	exon2	c.T266C	p.V89A	.	.	.
DDRGK1	65992	hgsc.bcm.edu	36	20	3128685	3128685	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_023935	exon4	c.A472G	p.K158E	.	.	.
ATRN	8455	hgsc.bcm.edu	36	20	3504504	3504504	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139322	exon13	c.C2123T	p.T708I	.	.	.
TP53TG5	27296	hgsc.bcm.edu	36	20	43437464	43437464	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014477	exon4	c.G397A	p.V133M	.	.	.
PIGT	51604	hgsc.bcm.edu	36	20	43486381	43486381	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001184730	exon8	c.C1040T	p.A347V	.	.	.
ZSWIM1	90204	hgsc.bcm.edu	36	20	43945517	43945517	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080603	exon2	c.G879T	p.K293N	.	.	.
PCIF1	63935	hgsc.bcm.edu	36	20	44008324	44008324	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022104	exon14	c.C1507T	p.R503X	.	.	.
CDH22	64405	hgsc.bcm.edu	36	20	44279030	44279030	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021248	exon4	c.G680A	p.R227Q	.	.	.
CDH22	64405	hgsc.bcm.edu	36	20	44303149	44303149	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021248	exon2	c.C410T	p.A137V	.	.	.
SLC23A2	9962	hgsc.bcm.edu	36	20	4812366	4812366	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_203327	exon9	c.C746A	p.P249H	.	.	.
BMP7	655	hgsc.bcm.edu	36	20	55192267	55192267	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001719	exon4	c.G876A	p.R292R	.	.	.
TUBB1	81027	hgsc.bcm.edu	36	20	57032802	57032802	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030773	exon4	c.C925T	p.R309C	.	.	.
CDH26	60437	hgsc.bcm.edu	36	20	58002787	58002787	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_177980	exon11	c.G1514A	p.R505H	.	.	.
LRRN4	164312	hgsc.bcm.edu	36	20	5970799	5970799	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152611	exon5	c.C1092T	p.S364S	.	.	.
DIDO1	11083	hgsc.bcm.edu	36	20	60995626	60995626	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001193370	exon12	c.G2938A	p.A980T	.	.	.
DIDO1	11083	hgsc.bcm.edu	36	20	61007785	61007785	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022105	exon6	c.C1487T	p.A496V	.	.	.
TMX4	56255	hgsc.bcm.edu	36	20	7911255	7911255	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021156	exon8	c.A693T	p.R231S	.	.	.
AKT1	207	hgsc.bcm.edu	36	14	104312567	104312567	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001014432	exon7	c.T458C	p.L153P	.	.	.
CDCA4	55038	hgsc.bcm.edu	36	14	104549091	104549091	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017955	exon2	c.C221T	p.T74M	.	.	.
FITM1	161247	hgsc.bcm.edu	36	14	23671821	23671821	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_203402	exon2	c.C828T	p.S276S	.	.	.
FOXG1	2290	hgsc.bcm.edu	36	14	28307676	28307676	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005249	exon1	c.G1440C	p.Q480H	.	.	.
BAZ1A	11177	hgsc.bcm.edu	36	14	34313385	34313385	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013448	exon19	c.C2896T	p.P966S	.	.	.
BAZ1A	11177	hgsc.bcm.edu	36	14	34401094	34401094	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013448	exon3	c.G299A	p.R100H	.	.	.
FKBP3	2287	hgsc.bcm.edu	36	14	44660537	44660537	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002013	exon4	c.G355T	p.G119X	.	.	.
KLHDC2	23588	hgsc.bcm.edu	36	14	49311102	49311102	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014315	exon3	c.C307T	p.L103L	.	.	.
SYNE2	23224	hgsc.bcm.edu	36	14	63745257	63745257	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015180	exon101	c.G18230A	p.S6077N	.	.	.
SPTB	6710	hgsc.bcm.edu	36	14	64307471	64307471	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001024858	exon26	c.C5683T	p.R1895C	.	.	.
TTLL5	23093	hgsc.bcm.edu	36	14	75235342	75235342	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015072	exon7	c.G561A	p.G187G	.	.	.
NRXN3	9369	hgsc.bcm.edu	36	14	79003392	79003392	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138970	exon2	c.C323T	p.T108M	.	.	.
TSHR	7253	hgsc.bcm.edu	36	14	80679896	80679896	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000369	exon10	c.G1741A	p.A581T	.	.	.
C14orf102	55051	hgsc.bcm.edu	36	14	89814466	89814466	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017970	exon14	c.G3462A	p.P1154P	.	.	.
C14orf102	55051	hgsc.bcm.edu	36	14	89828876	89828876	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017970	exon9	c.G1760A	p.R587H	.	.	.
SLC24A4	123041	hgsc.bcm.edu	36	14	92018835	92018835	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153646	exon13	c.C1314T	p.C438C	.	.	.
KIAA1409	57578	hgsc.bcm.edu	36	14	93078721	93078721	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020818	exon14	c.C1150T	p.L384L	.	.	.
C14orf21	161424	hgsc.bcm.edu	36	14	23839774	23839775	+	Frame_Shift_Del	DEL	GT	GT	-	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	GT	GT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_174913	exon2	c.568_569del	p.190_190del	.	.	.
FANCM	57697	hgsc.bcm.edu	36	14	44715593	44715595	+	In_Frame_Del	DEL	ATC	ATC	-	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	ATC	ATC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020937	exon14	c.3886_3888del	p.1296_1296del	.	.	.
HPS4	89781	hgsc.bcm.edu	36	22	25190351	25190351	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152841	exon9	c.G1230A	p.T410T	.	.	.
NF2	4771	hgsc.bcm.edu	36	22	28397827	28397827	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000268	exon11	c.C1012T	p.R338C	.	.	.
TCN2	6948	hgsc.bcm.edu	36	22	29336990	29336990	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001184726	exon2	c.G197A	p.G66E	.	.	.
MFNG	4242	hgsc.bcm.edu	36	22	36206276	36206276	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166343	exon2	c.C270T	p.H90H	.	.	.
DDX17	10521	hgsc.bcm.edu	36	22	37213834	37213834	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001098504	exon12	c.C1680T	p.G560G	.	.	.
TTLL1	25809	hgsc.bcm.edu	36	22	41790177	41790177	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012263	exon6	c.G601A	p.V201I	.	.	.
PARVB	29780	hgsc.bcm.edu	36	22	42858810	42858810	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001003828	exon6	c.C586T	p.R196X	.	.	.
TBC1D22A	25771	hgsc.bcm.edu	36	22	45572063	45572063	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014346	exon4	c.C519T	p.T173T	.	.	.
TBC1D22A	25771	hgsc.bcm.edu	36	22	45811648	45811648	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014346	exon11	c.C1219G	p.L407V	.	.	.
RNASEH2A	10535	hgsc.bcm.edu	36	19	12781925	12781925	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006397	exon5	c.C452T	p.A151V	.	.	.
RTBDN	83546	hgsc.bcm.edu	36	19	12798681	12798681	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031429	exon6	c.G466A	p.A156T	.	.	.
MRI1	84245	hgsc.bcm.edu	36	19	13744026	13744026	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001031727	exon6	c.G1041T	p.E347D	.	.	.
OR7C1	26664	hgsc.bcm.edu	36	19	14771188	14771188	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198944	exon1	c.C761T	p.T254M	.	.	.
CIB3	117286	hgsc.bcm.edu	36	19	16136679	16136679	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_054113	exon5	c.C392T	p.T131M	.	.	.
CALR3	125972	hgsc.bcm.edu	36	19	16455761	16455761	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145046	exon5	c.A658G	p.T220A	.	.	.
SFRS14	10147	hgsc.bcm.edu	36	19	18981997	18981997	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014884	exon5	c.A2005G	p.N669D	.	.	.
ATP13A1	57130	hgsc.bcm.edu	36	19	19631791	19631791	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020410	exon2	c.C402T	p.Y134Y	.	.	.
GPATCH1	55094	hgsc.bcm.edu	36	19	38278554	38278554	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018025	exon6	c.G600A	p.S200S	.	.	.
LSM14A	26065	hgsc.bcm.edu	36	19	39404352	39404352	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114093	exon9	c.G1237T	p.G413X	.	.	.
RBM42	79171	hgsc.bcm.edu	36	19	40820217	40820217	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024321	exon10	c.G1364A	p.R455H	.	.	.
WDR62	284403	hgsc.bcm.edu	36	19	41249054	41249054	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001083961	exon5	c.C446T	p.A149V	.	.	.
ZFP82	284406	hgsc.bcm.edu	36	19	41575669	41575669	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133466	exon5	c.T1413A	p.I471I	.	.	.
ZNF566	84924	hgsc.bcm.edu	36	19	41655672	41655672	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145344	exon4	c.A213T	p.L71L	.	.	.
ZNF585A	199704	hgsc.bcm.edu	36	19	42335818	42335818	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199126	exon6	c.T658C	p.C220R	.	.	.
SIPA1L3	23094	hgsc.bcm.edu	36	19	43335435	43335435	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015073	exon13	c.C3649T	p.R1217C	.	.	.
RYR1	6261	hgsc.bcm.edu	36	19	43686702	43686702	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042723	exon50	c.C7929T	p.L2643L	.	.	.
RYR1	6261	hgsc.bcm.edu	36	19	43717817	43717817	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042723	exon80	c.G11446A	p.D3816N	.	.	.
FBXO27	126433	hgsc.bcm.edu	36	19	44213709	44213709	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_178820	exon3	c.G456A	p.T152T	.	.	.
TIMM50	92609	hgsc.bcm.edu	36	19	44672284	44672284	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001001563	exon11	c.G1355A	p.R452H	.	.	.
DYRK1B	9149	hgsc.bcm.edu	36	19	45012506	45012506	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006483	exon5	c.T374C	p.V125A	.	.	.
HIPK4	147746	hgsc.bcm.edu	36	19	45581743	45581743	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144685	exon2	c.C609T	p.C203C	.	.	.
PRX	57716	hgsc.bcm.edu	36	19	45594199	45594199	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181882	exon7	c.A1900G	p.M634V	.	.	.
CYP2A13	1553	hgsc.bcm.edu	36	19	46287878	46287878	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000766	exon3	c.G430A	p.G144S	.	.	.
CDC34	997	hgsc.bcm.edu	36	19	486881	486881	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004359	exon2	c.C222A	p.A74A	.	.	.
C19orf61	56006	hgsc.bcm.edu	36	19	48929642	48929642	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019108	exon11	c.G1186T	p.A396S	.	.	.
BCAM	4059	hgsc.bcm.edu	36	19	50008682	50008682	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001013257	exon6	c.G749A	p.R250H	.	.	.
ERCC2	2068	hgsc.bcm.edu	36	19	50552632	50552632	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000400	exon14	c.C1317T	p.D439D	.	.	.
EML2	24139	hgsc.bcm.edu	36	19	50825049	50825049	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001193269	exon10	c.G1047T	p.K349N	.	.	.
KCNJ14	3770	hgsc.bcm.edu	36	19	53659302	53659302	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013348	exon3	c.A767G	p.D256G	.	.	.
RASIP1	54922	hgsc.bcm.edu	36	19	53919446	53919446	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017805	exon10	c.C2504A	p.A835D	.	.	.
SAFB2	9667	hgsc.bcm.edu	36	19	5546389	5546389	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014649	exon14	c.C1902T	p.R634R	.	.	.
POLD1	5424	hgsc.bcm.edu	36	19	55610532	55610532	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002691	exon21	c.G2590A	p.A864T	.	.	.
SIGLEC6	946	hgsc.bcm.edu	36	19	56726418	56726418	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001245	exon2	c.A235G	p.N79D	.	.	.
FPR2	2358	hgsc.bcm.edu	36	19	56963799	56963799	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001462	exon2	c.C76T	p.R26W	.	.	.
ZNF160	90338	hgsc.bcm.edu	36	19	58263196	58263196	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198893	exon7	c.T2403C	p.S801S	.	.	.
ZNF677	342926	hgsc.bcm.edu	36	19	58433241	58433241	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182609	exon5	c.T551C	p.V184A	.	.	.
MYADM	91663	hgsc.bcm.edu	36	19	59069035	59069035	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001020820	exon3	c.C440T	p.A147V	.	.	.
VSTM1	284415	hgsc.bcm.edu	36	19	59237350	59237350	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198481	exon5	c.C480T	p.S160S	.	.	.
LILRA4	23547	hgsc.bcm.edu	36	19	59537000	59537000	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012276	exon7	c.C1304A	p.T435N	.	.	.
TTYH1	57348	hgsc.bcm.edu	36	19	59638581	59638581	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005367	exon11	c.C1173T	p.G391G	.	.	.
NLRP11	204801	hgsc.bcm.edu	36	19	61013419	61013419	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145007	exon5	c.C369T	p.D123D	.	.	.
NLRP4	147945	hgsc.bcm.edu	36	19	61061256	61061256	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_134444	exon3	c.G685A	p.V229I	.	.	.
NLRP8	126205	hgsc.bcm.edu	36	19	61158120	61158120	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_176811	exon3	c.T884G	p.L295R	.	.	.
ZNF583	147949	hgsc.bcm.edu	36	19	61626727	61626727	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001159860	exon5	c.T888C	p.Y296Y	.	.	.
ZNF667	63934	hgsc.bcm.edu	36	19	61644537	61644537	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022103	exon5	c.A1639G	p.R547G	.	.	.
ZSCAN18	65982	hgsc.bcm.edu	36	19	63289392	63289392	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145542	exon6	c.C967T	p.R323W	.	.	.
TNFSF14	8740	hgsc.bcm.edu	36	19	6616210	6616210	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003807	exon5	c.C450T	p.G150G	.	.	.
STXBP2	6813	hgsc.bcm.edu	36	19	7613899	7613899	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006949	exon12	c.A991G	p.K331E	.	.	.
SNAPC2	6618	hgsc.bcm.edu	36	19	7893384	7893384	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003083	exon5	c.T740C	p.L247P	.	.	.
FBN3	84467	hgsc.bcm.edu	36	19	8082045	8082045	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032447	exon32	c.C4107T	p.N1369N	.	.	.
FBN3	84467	hgsc.bcm.edu	36	19	8109373	8109373	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032447	exon8	c.G941A	p.R314H	.	.	.
PIN1	5300	hgsc.bcm.edu	36	19	9819734	9819734	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006221	exon3	c.G300T	p.E100D	.	.	.
RDH8	50700	hgsc.bcm.edu	36	19	9993262	9993262	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015725	exon6	c.A773G	p.N258S	.	.	.
VPS13B	157680	hgsc.bcm.edu	36	8	100935601	100935601	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152564	exon56	c.C10808T	p.A3603V	.	.	.
ABRA	137735	hgsc.bcm.edu	36	8	107842754	107842754	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139166	exon2	c.G833A	p.R278H	.	.	.
KCNV1	27012	hgsc.bcm.edu	36	8	111053693	111053693	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014379	exon2	c.C961T	p.R321C	.	.	.
CSMD3	114788	hgsc.bcm.edu	36	8	113323145	113323145	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198123	exon66	c.C10448G	p.T3483R	.	.	.
CSMD3	114788	hgsc.bcm.edu	36	8	113416743	113416743	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198123	exon45	c.A7156T	p.S2386C	.	.	.
CSMD3	114788	hgsc.bcm.edu	36	8	113737669	113737669	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198123	exon18	c.A2894G	p.Y965C	.	.	.
RAD21	5885	hgsc.bcm.edu	36	8	117934014	117934014	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006265	exon10	c.C1276T	p.P426S	.	.	.
COMMD5	28991	hgsc.bcm.edu	36	8	146047391	146047391	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001081004	exon2	c.G137A	p.S46N	.	.	.
CLN8	2055	hgsc.bcm.edu	36	8	1706877	1706877	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018941	exon2	c.G250A	p.A84T	.	.	.
CSGALNACT1	55790	hgsc.bcm.edu	36	8	19407557	19407557	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018371	exon4	c.C69T	p.C23C	.	.	.
LPL	4023	hgsc.bcm.edu	36	8	19857639	19857639	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000237	exon6	c.C783A	p.D261E	.	.	.
MYOM2	9172	hgsc.bcm.edu	36	8	2008939	2008939	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003970	exon10	c.G1072A	p.V358M	.	.	.
DOK2	9046	hgsc.bcm.edu	36	8	21824249	21824249	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003974	exon4	c.C499T	p.R167W	.	.	.
LGI3	203190	hgsc.bcm.edu	36	8	22061621	22061621	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139278	exon8	c.C1644A	p.A548A	.	.	.
LOXL2	4017	hgsc.bcm.edu	36	8	23247055	23247055	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002318	exon5	c.G770A	p.R257H	.	.	.
LOXL2	4017	hgsc.bcm.edu	36	8	23273695	23273695	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002318	exon3	c.T384A	p.C128X	.	.	.
ZNF395	55893	hgsc.bcm.edu	36	8	28270170	28270170	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018660	exon4	c.G519A	p.V173V	.	.	.
RLBP1L1	157807	hgsc.bcm.edu	36	8	62529321	62529321	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173519	exon4	c.A698G	p.Y233C	.	.	.
C8orf34	116328	hgsc.bcm.edu	36	8	69607778	69607778	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052958	exon7	c.G945C	p.K315N	.	.	.
FAM164A	51101	hgsc.bcm.edu	36	8	79772253	79772253	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016010	exon6	c.T561G	p.S187S	.	.	.
CDH17	1015	hgsc.bcm.edu	36	8	95241528	95241528	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001144663	exon12	c.G1398A	p.G466G	.	.	.
VCAM1	7412	hgsc.bcm.edu	36	1	100961456	100961456	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199834	exon3	c.G447A	p.R149R	.	.	.
EXTL2	2135	hgsc.bcm.edu	36	1	101112261	101112261	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001033025	exon5	c.A818G	p.E273G	.	.	.
KIF1B	23095	hgsc.bcm.edu	36	1	10345980	10345980	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015074	exon39	c.G4219T	p.G1407C	.	.	.
STXBP3	6814	hgsc.bcm.edu	36	1	109152955	109152955	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007269	exon19	c.A1712C	p.K571T	.	.	.
CLCC1	23155	hgsc.bcm.edu	36	1	109278858	109278858	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001048210	exon11	c.C1613T	p.A538V	.	.	.
C1orf127	148345	hgsc.bcm.edu	36	1	10931162	10931162	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001170754	exon12	c.C1617A	p.T539T	.	.	.
AMPD2	271	hgsc.bcm.edu	36	1	109970917	109970917	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004037	exon6	c.C740T	p.A247V	.	.	.
CEPT1	10390	hgsc.bcm.edu	36	1	111503620	111503620	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006090	exon3	c.T435C	p.S145S	.	.	.
MAGI3	260425	hgsc.bcm.edu	36	1	113986477	113986477	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152900	exon10	c.C1782T	p.D594D	.	.	.
VPS13D	55187	hgsc.bcm.edu	36	1	12291162	12291162	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018156	exon27	c.C6527T	p.S2176L	.	.	.
PRAMEF12	390999	hgsc.bcm.edu	36	1	12760257	12760257	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001080830	exon3	c.C1380T	p.G460G	.	.	.
PRDM2	7799	hgsc.bcm.edu	36	1	14015527	14015527	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135610	exon7	c.G530A	p.R177H	.	.	.
CHD1L	9557	hgsc.bcm.edu	36	1	145190914	145190914	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004284	exon2	c.G140A	p.R47H	.	.	.
SV2A	9900	hgsc.bcm.edu	36	1	148148854	148148854	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014849	exon5	c.C981A	p.A327A	.	.	.
SEMA6C	10500	hgsc.bcm.edu	36	1	149379082	149379082	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001178061	exon4	c.C227T	p.A76V	.	.	.
FLG	2312	hgsc.bcm.edu	36	1	150551392	150551392	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002016	exon3	c.G2594T	p.G865V	.	.	.
KPRP	448834	hgsc.bcm.edu	36	1	150999765	150999765	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001025231	exon2	c.G1077A	p.P359P	.	.	.
IVL	3713	hgsc.bcm.edu	36	1	151150322	151150322	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005547	exon2	c.G1425A	p.Q475Q	.	.	.
TDRD10	126668	hgsc.bcm.edu	36	1	152783563	152783563	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182499	exon10	c.G743A	p.G248E	.	.	.
ZBTB7B	51043	hgsc.bcm.edu	36	1	153254489	153254489	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015872	exon3	c.C729T	p.G243G	.	.	.
THBS3	7059	hgsc.bcm.edu	36	1	153438437	153438437	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007112	exon10	c.A1111G	p.I371V	.	.	.
ARHGEF11	9826	hgsc.bcm.edu	36	1	155173750	155173750	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198236	exon39	c.G4355A	p.R1452H	.	.	.
ARHGEF11	9826	hgsc.bcm.edu	36	1	155176144	155176144	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198236	exon37	c.C3916T	p.Q1306X	.	.	.
FCER1A	2205	hgsc.bcm.edu	36	1	157544222	157544222	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002001	exon6	c.C650T	p.A217V	.	.	.
PEX19	5824	hgsc.bcm.edu	36	1	158519361	158519361	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002857	exon3	c.G343A	p.V115M	.	.	.
USP21	27005	hgsc.bcm.edu	36	1	159397218	159397218	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012475	exon2	c.G164A	p.R55Q	.	.	.
ADAMTS4	9507	hgsc.bcm.edu	36	1	159427786	159427786	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005099	exon9	c.C2280T	p.R760R	.	.	.
NR1I3	9970	hgsc.bcm.edu	36	1	159466276	159466276	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001077482	exon9	c.T1009C	p.Y337H	.	.	.
RGS4	5999	hgsc.bcm.edu	36	1	161310938	161310938	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005613	exon5	c.A582G	p.S194S	.	.	.
UCK2	7371	hgsc.bcm.edu	36	1	164143595	164143595	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012474	exon7	c.C697T	p.P233S	.	.	.
NADK	65220	hgsc.bcm.edu	36	1	1675945	1675945	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198995	exon6	c.G645C	p.E215D	.	.	.
PRRX1	5396	hgsc.bcm.edu	36	1	168962121	168962121	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006902	exon3	c.C554T	p.P185L	.	.	.
ANKRD45	339416	hgsc.bcm.edu	36	1	171845943	171845943	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198493	exon6	c.T765C	p.H255H	.	.	.
ATP13A2	23400	hgsc.bcm.edu	36	1	17191577	17191577	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022089	exon17	c.G1836A	p.L612L	.	.	.
KLHL20	27252	hgsc.bcm.edu	36	1	171991699	171991699	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014458	exon6	c.A866C	p.E289A	.	.	.
RC3H1	149041	hgsc.bcm.edu	36	1	172208350	172208350	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_172071	exon7	c.C1141A	p.L381M	.	.	.
RABGAP1L	9910	hgsc.bcm.edu	36	1	172937884	172937884	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014857	exon17	c.C2036A	p.P679Q	.	.	.
ASTN1	460	hgsc.bcm.edu	36	1	175268392	175268392	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004319	exon3	c.A688G	p.T230A	.	.	.
ZNF648	127665	hgsc.bcm.edu	36	1	180292675	180292675	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001009992	exon2	c.C1094G	p.P365R	.	.	.
RGS2	5997	hgsc.bcm.edu	36	1	191044828	191044828	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002923	exon1	c.C4T	p.Q2X	.	.	.
UBR4	23352	hgsc.bcm.edu	36	1	19298712	19298712	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020765	exon90	c.A13268G	p.E4423G	.	.	.
KCNT2	343450	hgsc.bcm.edu	36	1	194494040	194494040	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198503	exon26	c.C3118T	p.R1040X	.	.	.
PKP1	5317	hgsc.bcm.edu	36	1	199554530	199554530	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000299	exon6	c.G1216A	p.A406T	.	.	.
CNTN2	6900	hgsc.bcm.edu	36	1	203300201	203300201	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005076	exon11	c.G1369T	p.E457X	.	.	.
KLHDC8A	55220	hgsc.bcm.edu	36	1	203579263	203579263	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018203	exon2	c.C93G	p.G31G	.	.	.
PLXNA2	5362	hgsc.bcm.edu	36	1	206332818	206332818	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025179	exon9	c.G2033A	p.R678H	.	.	.
C1orf74	148304	hgsc.bcm.edu	36	1	208023069	208023069	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152485	exon2	c.C534A	p.G178G	.	.	.
KIF17	57576	hgsc.bcm.edu	36	1	20908897	20908897	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001122819	exon4	c.C492T	p.H164H	.	.	.
EIF4G3	8672	hgsc.bcm.edu	36	1	21103975	21103975	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003760	exon10	c.G1572T	p.E524D	.	.	.
ESRRG	2104	hgsc.bcm.edu	36	1	214917429	214917429	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_206595	exon3	c.T15C	p.D5D	.	.	.
IARS2	55699	hgsc.bcm.edu	36	1	218382927	218382927	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018060	exon21	c.G2579A	p.R860H	.	.	.
TAF1A	9015	hgsc.bcm.edu	36	1	220804056	220804056	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005681	exon8	c.T929C	p.M310T	.	.	.
WDR26	80232	hgsc.bcm.edu	36	1	222665851	222665851	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025160	exon7	c.G1059T	p.E353D	.	.	.
WNT4	54361	hgsc.bcm.edu	36	1	22320362	22320362	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030761	exon4	c.C517T	p.R173W	.	.	.
ENAH	55740	hgsc.bcm.edu	36	1	223759377	223759377	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001008493	exon12	c.C1540T	p.R514W	.	.	.
EPHX1	2052	hgsc.bcm.edu	36	1	224083148	224083148	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001136018	exon2	c.G95T	p.G32V	.	.	.
LIN9	286826	hgsc.bcm.edu	36	1	224519906	224519906	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173083	exon10	c.C1037T	p.S346F	.	.	.
CDC42BPA	8476	hgsc.bcm.edu	36	1	225283380	225283380	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014826	exon28	c.C3685T	p.R1229C	.	.	.
ABCB10	23456	hgsc.bcm.edu	36	1	227723991	227723991	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012089	exon11	c.C1921T	p.R641W	.	.	.
EPHA8	2046	hgsc.bcm.edu	36	1	22775648	22775648	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020526	exon3	c.C511T	p.R171C	.	.	.
TAF5L	27097	hgsc.bcm.edu	36	1	227797295	227797295	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014409	exon5	c.A1142G	p.Q381R	.	.	.
GALNT2	2590	hgsc.bcm.edu	36	1	228448499	228448499	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004481	exon8	c.C797T	p.A266V	.	.	.
PGBD5	79605	hgsc.bcm.edu	36	1	228559340	228559340	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024554	exon2	c.G475A	p.G159R	.	.	.
C1QB	713	hgsc.bcm.edu	36	1	22860266	22860266	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000491	exon3	c.C562T	p.R188W	.	.	.
COG2	22796	hgsc.bcm.edu	36	1	228871901	228871901	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007357	exon7	c.C771T	p.D257D	.	.	.
EPHB2	2048	hgsc.bcm.edu	36	1	23105119	23105119	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017449	exon10	c.C1818T	p.N606N	.	.	.
HEATR1	55127	hgsc.bcm.edu	36	1	234796694	234796694	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018072	exon30	c.C4183T	p.R1395C	.	.	.
FH	2271	hgsc.bcm.edu	36	1	239747165	239747165	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000143	exon2	c.C207T	p.G69G	.	.	.
PLD5	200150	hgsc.bcm.edu	36	1	240319826	240319826	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001195811	exon10	c.A1378G	p.K460E	.	.	.
SDCCAG8	10806	hgsc.bcm.edu	36	1	241504503	241504503	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006642	exon4	c.T342C	p.T114T	.	.	.
IL28RA	163702	hgsc.bcm.edu	36	1	24356279	24356279	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_170743	exon7	c.C1491T	p.G497G	.	.	.
NLRP3	114548	hgsc.bcm.edu	36	1	245654944	245654944	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004895	exon3	c.C1576A	p.Q526K	.	.	.
TRIM58	25893	hgsc.bcm.edu	36	1	246105861	246105861	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015431	exon6	c.G908A	p.S303N	.	.	.
ZNF692	55657	hgsc.bcm.edu	36	1	247111562	247111562	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001193328	exon10	c.C1060T	p.R354C	.	.	.
ZNF692	55657	hgsc.bcm.edu	36	1	247116718	247116718	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001193328	exon6	c.C575A	p.P192H	.	.	.
SRRM1	10250	hgsc.bcm.edu	36	1	24848052	24848052	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005839	exon4	c.C350T	p.A117V	.	.	.
MMEL1	79258	hgsc.bcm.edu	36	1	2531041	2531041	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033467	exon5	c.G382A	p.V128M	.	.	.
ARID1A	8289	hgsc.bcm.edu	36	1	26965331	26965331	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006015	exon9	c.G2765A	p.G922D	.	.	.
NR0B2	8431	hgsc.bcm.edu	36	1	27111034	27111034	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021969	exon2	c.C663A	p.A221A	.	.	.
MAP3K6	9064	hgsc.bcm.edu	36	1	27559403	27559403	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004672	exon16	c.C2098A	p.L700M	.	.	.
SNRNP40	9410	hgsc.bcm.edu	36	1	31534838	31534838	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004814	exon4	c.A381G	p.A127A	.	.	.
GJB3	2707	hgsc.bcm.edu	36	1	35023735	35023735	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024009	exon2	c.C785T	p.A262V	.	.	.
CSF3R	1441	hgsc.bcm.edu	36	1	36704321	36704321	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_172313	exon18	c.G2315A	p.G772D	.	.	.
CSF3R	1441	hgsc.bcm.edu	36	1	36706371	36706371	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_172313	exon13	c.G1615T	p.G539C	.	.	.
MACF1	23499	hgsc.bcm.edu	36	1	39571979	39571979	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033044	exon1	c.A2452G	p.T818A	.	.	.
KCNQ4	9132	hgsc.bcm.edu	36	1	41069558	41069558	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004700	exon10	c.C1508T	p.A503V	.	.	.
ZNF691	51058	hgsc.bcm.edu	36	1	43089544	43089544	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015911	exon2	c.A328G	p.K110E	.	.	.
KIAA0467	23334	hgsc.bcm.edu	36	1	43686982	43686982	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015284	exon55	c.A7385G	p.Y2462C	.	.	.
SLC6A9	6536	hgsc.bcm.edu	36	1	44246814	44246814	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201649	exon5	c.G607A	p.A203T	.	.	.
GPBP1L1	60313	hgsc.bcm.edu	36	1	45871801	45871801	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021639	exon10	c.G991A	p.D331N	.	.	.
CYP4A11	1579	hgsc.bcm.edu	36	1	47179579	47179579	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000778	exon1	c.C114T	p.Y38Y	.	.	.
CDKN2C	1031	hgsc.bcm.edu	36	1	51212290	51212290	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_078626	exon2	c.G267A	p.L89L	.	.	.
TMEM48	55706	hgsc.bcm.edu	36	1	54025512	54025512	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018087	exon16	c.G1707A	p.S569S	.	.	.
ACOT11	26027	hgsc.bcm.edu	36	1	54822988	54822988	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_147161	exon2	c.G106A	p.A36T	.	.	.
CHD5	26038	hgsc.bcm.edu	36	1	6132018	6132018	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015557	exon8	c.T1036C	p.C346R	.	.	.
CACHD1	57685	hgsc.bcm.edu	36	1	64920338	64920338	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020925	exon26	c.C3394T	p.R1132C	.	.	.
SLC35D1	23169	hgsc.bcm.edu	36	1	67288080	67288080	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015139	exon6	c.T506C	p.M169T	.	.	.
SFRS11	9295	hgsc.bcm.edu	36	1	70483011	70483011	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004768	exon9	c.G857A	p.R286Q	.	.	.
LHX8	431707	hgsc.bcm.edu	36	1	75379271	75379271	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001001933	exon5	c.G281A	p.C94Y	.	.	.
PIGK	10026	hgsc.bcm.edu	36	1	77399929	77399929	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005482	exon7	c.C640T	p.R214X	.	.	.
ZZZ3	26009	hgsc.bcm.edu	36	1	77870650	77870650	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015534	exon5	c.C978A	p.A326A	.	.	.
ERRFI1	54206	hgsc.bcm.edu	36	1	7995985	7995985	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018948	exon4	c.G1261A	p.A421T	.	.	.
SAMD11	148398	hgsc.bcm.edu	36	1	864319	864319	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152486	exon6	c.G467C	p.R156P	.	.	.
GBP3	2635	hgsc.bcm.edu	36	1	89250192	89250192	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018284	exon7	c.A975C	p.A325A	.	.	.
GFI1	2672	hgsc.bcm.edu	36	1	92721625	92721625	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127215	exon2	c.G8A	p.R3H	.	.	.
EVI5	7813	hgsc.bcm.edu	36	1	92863969	92863969	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005665	exon13	c.G1590A	p.Q530Q	.	.	.
DPYD	1806	hgsc.bcm.edu	36	1	97811933	97811933	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000110	exon11	c.C1310T	p.A437V	.	.	.
DPYD	1806	hgsc.bcm.edu	36	1	97831487	97831487	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000110	exon10	c.G1003A	p.V335M	.	.	.
DFFA	1676	hgsc.bcm.edu	36	1	10446183	10446184	+	Frame_Shift_Del	DEL	GT	GT	-	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	GT	GT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004401	exon4	c.522_523del	p.174_175del	.	.	.
KIAA1324	57535	hgsc.bcm.edu	36	1	109529247	109529248	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	AC	AC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020775	exon8	c.1010_1011del	p.337_337del	.	.	.
SFPQ	6421	hgsc.bcm.edu	36	1	35425429	35425430	+	Frame_Shift_Del	DEL	TC	TC	-	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	TC	TC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005066	exon8	c.1825_1826del	p.609_609del	.	.	.
TRPC6	7225	hgsc.bcm.edu	36	11	100865008	100865008	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004621	exon4	c.T1163C	p.L388P	.	.	.
ATM	472	hgsc.bcm.edu	36	11	107719202	107719202	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000051	exon57	c.C8312T	p.T2771I	.	.	.
DRD2	1813	hgsc.bcm.edu	36	11	112793974	112793974	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000795	exon3	c.C380T	p.A127V	.	.	.
USP28	57646	hgsc.bcm.edu	36	11	113209413	113209413	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020886	exon7	c.T698G	p.V233G	.	.	.
TMPRSS4	56649	hgsc.bcm.edu	36	11	117474921	117474921	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001173551	exon3	c.C49A	p.L17M	.	.	.
ARCN1	372	hgsc.bcm.edu	36	11	117959787	117959787	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142281	exon3	c.A237T	p.Q79H	.	.	.
C2CD2L	9854	hgsc.bcm.edu	36	11	118490043	118490043	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014807	exon13	c.C1670T	p.A557V	.	.	.
PVRL1	5818	hgsc.bcm.edu	36	11	119041015	119041015	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002855	exon6	c.G1206T	p.K402N	.	.	.
TECTA	7007	hgsc.bcm.edu	36	11	120505925	120505925	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005422	exon9	c.C2736T	p.C912C	.	.	.
TECTA	7007	hgsc.bcm.edu	36	11	120544018	120544018	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005422	exon18	c.A5632G	p.S1878G	.	.	.
C11orf63	79864	hgsc.bcm.edu	36	11	122310817	122310817	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024806	exon5	c.C1458T	p.H486H	.	.	.
OR8B12	219858	hgsc.bcm.edu	36	11	123918722	123918722	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005195	exon1	c.C39T	p.L13L	.	.	.
RICS	9743	hgsc.bcm.edu	36	11	128347672	128347672	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014715	exon12	c.G2850A	p.T950T	.	.	.
TEAD1	7003	hgsc.bcm.edu	36	11	12861189	12861189	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021961	exon9	c.A640G	p.T214A	.	.	.
PRDM10	56980	hgsc.bcm.edu	36	11	129322306	129322306	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020228	exon5	c.C464T	p.T155M	.	.	.
NTM	50863	hgsc.bcm.edu	36	11	131710194	131710194	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001144058	exon8	c.G1012T	p.A338S	HNT,central_nervous_system,brain,Substitution - Missense,0	.	.
VPS26B	112936	hgsc.bcm.edu	36	11	133618395	133618395	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052875	exon4	c.C718T	p.R240X	.	.	.
PLEKHA7	144100	hgsc.bcm.edu	36	11	16819676	16819676	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175058	exon9	c.T866C	p.L289P	.	.	.
KCNJ11	3767	hgsc.bcm.edu	36	11	17365536	17365536	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000525	exon1	c.G679A	p.E227K	.	.	.
SERGEF	26297	hgsc.bcm.edu	36	11	17986083	17986083	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012139	exon2	c.C177G	p.G59G	.	.	.
TSG101	7251	hgsc.bcm.edu	36	11	18462107	18462107	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006292	exon8	c.G729T	p.K243N	.	.	.
NAV2	89797	hgsc.bcm.edu	36	11	19870697	19870697	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001111018	exon6	c.G720A	p.P240P	.	.	.
NAV2	89797	hgsc.bcm.edu	36	11	19927030	19927030	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001111018	exon10	c.G2281A	p.A761T	.	.	.
TRAF6	7189	hgsc.bcm.edu	36	11	36468619	36468619	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145803	exon8	c.G914A	p.R305H	.	.	.
ARFGAP2	84364	hgsc.bcm.edu	36	11	47149853	47149853	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032389	exon9	c.G747T	p.Q249H	.	.	.
PTPRJ	5795	hgsc.bcm.edu	36	11	48121107	48121107	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002843	exon12	c.T2504C	p.V835A	.	.	.
HBB	3043	hgsc.bcm.edu	36	11	5204417	5204417	+	Missense_Mutation	SNP	C	C	T	rs35548921	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000518	exon2	c.G281A	p.C94Y	.	.	.
UBQLNL	143630	hgsc.bcm.edu	36	11	5493428	5493428	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145053	exon1	c.T820G	p.Y274D	.	.	.
TNKS1BP1	85456	hgsc.bcm.edu	36	11	56844300	56844300	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033396	exon3	c.G557A	p.R186H	.	.	.
SLC43A3	29015	hgsc.bcm.edu	36	11	56941860	56941860	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199329	exon8	c.G608A	p.R203H	.	.	.
TMX2	51075	hgsc.bcm.edu	36	11	57262408	57262408	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015959	exon4	c.T371C	p.L124P	.	.	.
OR5B3	441608	hgsc.bcm.edu	36	11	57927168	57927168	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005469	exon1	c.T291A	p.A97A	.	.	.
GLYAT	10249	hgsc.bcm.edu	36	11	58233989	58233989	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201648	exon6	c.C717A	p.L239L	.	.	.
SLC15A3	51296	hgsc.bcm.edu	36	11	60463535	60463535	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016582	exon6	c.C1428T	p.S476S	.	.	.
DDB1	1642	hgsc.bcm.edu	36	11	60848160	60848160	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001923	exon7	c.G788A	p.R263Q	.	.	.
C11orf66	220004	hgsc.bcm.edu	36	11	61009935	61009935	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145017	exon7	c.C663A	p.P221P	.	.	.
SYT7	9066	hgsc.bcm.edu	36	11	61047184	61047184	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004200	exon8	c.C1046T	p.T349M	.	.	.
RAB3IL1	5866	hgsc.bcm.edu	36	11	61430568	61430568	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013401	exon5	c.C603T	p.P201P	.	.	.
FAM160A2	84067	hgsc.bcm.edu	36	11	6195906	6195906	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032127	exon9	c.C1528T	p.P510S	.	.	.
GANAB	23193	hgsc.bcm.edu	36	11	62150681	62150681	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198335	exon22	c.C2515T	p.R839W	.	.	.
SF1	7536	hgsc.bcm.edu	36	11	64293123	64293123	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201998	exon8	c.G834A	p.V278V	.	.	.
DPF2	5977	hgsc.bcm.edu	36	11	64870350	64870350	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006268	exon9	c.C961A	p.R321S	.	.	.
SNX32	254122	hgsc.bcm.edu	36	11	65374846	65374846	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152760	exon6	c.A547G	p.R183G	.	.	.
PACS1	55690	hgsc.bcm.edu	36	11	65759986	65759986	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018026	exon19	c.G2249A	p.G750D	.	.	.
TPP1	1200	hgsc.bcm.edu	36	11	6594134	6594134	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000391	exon8	c.C1063T	p.L355F	.	.	.
OR6A2	8590	hgsc.bcm.edu	36	11	6773127	6773127	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003696	exon1	c.C389T	p.A130V	.	.	.
TPCN2	219931	hgsc.bcm.edu	36	11	68581634	68581634	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139075	exon5	c.G442A	p.G148R	.	.	.
TMEM80	283232	hgsc.bcm.edu	36	11	690162	690162	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_174940	exon3	c.A111G	p.Q37Q	.	.	.
FGF3	2248	hgsc.bcm.edu	36	11	69340095	69340095	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005247	exon2	c.T254C	p.I85T	.	.	.
INPPL1	3636	hgsc.bcm.edu	36	11	71619840	71619840	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001567	exon12	c.C1456T	p.R486C	.	.	.
PAAF1	80227	hgsc.bcm.edu	36	11	73288977	73288977	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025155	exon6	c.A396G	p.G132G	.	.	.
CHRDL2	25884	hgsc.bcm.edu	36	11	74093258	74093258	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015424	exon7	c.C672T	p.S224S	.	.	.
SLCO2B1	11309	hgsc.bcm.edu	36	11	74554553	74554553	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007256	exon4	c.A359G	p.Y120C	.	.	.
TALDO1	6888	hgsc.bcm.edu	36	11	745917	745917	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006755	exon2	c.C136A	p.P46T	.	.	.
OR10A6	390093	hgsc.bcm.edu	36	11	7906224	7906224	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001004461	exon1	c.G562A	p.A188T	.	.	.
ST5	6764	hgsc.bcm.edu	36	11	8685959	8685959	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005418	exon15	c.C2371A	p.R791R	.	.	.
C11orf17	56672	hgsc.bcm.edu	36	11	8889648	8889648	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020642	exon2	c.C76A	p.L26I	.	.	.
AIM1	202	hgsc.bcm.edu	36	6	107075070	107075070	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001624	exon2	c.A2070G	p.V690V	.	.	.
TUBE1	51175	hgsc.bcm.edu	36	6	112499814	112499814	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016262	exon11	c.G1253T	p.R418M	.	.	.
SMPDL3A	10924	hgsc.bcm.edu	36	6	123172085	123172085	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006714	exon8	c.G1195A	p.D399N	.	.	.
TPD52L1	7164	hgsc.bcm.edu	36	6	125611201	125611201	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001003395	exon4	c.C272T	p.A91V	.	.	.
LAMA2	3908	hgsc.bcm.edu	36	6	129678663	129678663	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001079823	exon26	c.T3799G	p.F1267V	.	.	.
EPB41L2	2037	hgsc.bcm.edu	36	6	131232617	131232617	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001431	exon15	c.G2386A	p.E796K	.	.	.
EPB41L2	2037	hgsc.bcm.edu	36	6	131240951	131240951	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001431	exon14	c.C2029A	p.L677I	.	.	.
MOXD1	26002	hgsc.bcm.edu	36	6	132737568	132737568	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015529	exon2	c.T306C	p.A102A	.	.	.
VNN1	8876	hgsc.bcm.edu	36	6	133056887	133056887	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004666	exon3	c.C469T	p.R157C	.	.	.
LATS1	9113	hgsc.bcm.edu	36	6	150042883	150042883	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004690	exon5	c.C2414T	p.A805V	.	.	.
NUP43	348995	hgsc.bcm.edu	36	6	150105288	150105288	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198887	exon4	c.G433A	p.V145I	.	.	.
ULBP1	80329	hgsc.bcm.edu	36	6	150332924	150332924	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025218	exon4	c.C705A	p.I235I	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152804910	152804910	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033071	exon31	c.G4022A	p.R1341H	.	.	.
FBXO5	26271	hgsc.bcm.edu	36	6	153337809	153337809	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012177	exon2	c.C744T	p.S248S	.	.	.
IGF2R	3482	hgsc.bcm.edu	36	6	160374080	160374080	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Visver			SOLID	NM_000876	exon9	c.G1162A	p.D388N	.	.	.
PLG	5340	hgsc.bcm.edu	36	6	161057722	161057722	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000301	exon7	c.C724T	p.R242W	.	.	.
MAP3K4	4216	hgsc.bcm.edu	36	6	161447651	161447651	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006724	exon19	c.G3822A	p.T1274T	.	.	.
MAP3K4	4216	hgsc.bcm.edu	36	6	161453792	161453792	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006724	exon24	c.G4472C	p.G1491A	.	.	.
T	6862	hgsc.bcm.edu	36	6	166500285	166500285	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003181	exon3	c.G256A	p.A86T	.	.	.
RPS6KA2	6196	hgsc.bcm.edu	36	6	166756789	166756789	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021135	exon17	c.C1688T	p.A563V	.	.	.
MLLT4	4301	hgsc.bcm.edu	36	6	168041829	168041829	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040000	exon11	c.C1413T	p.Y471Y	.	.	.
THBS2	7058	hgsc.bcm.edu	36	6	169374117	169374117	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003247	exon14	c.C2034T	p.C678C	.	.	.
MBOAT1	154141	hgsc.bcm.edu	36	6	20221204	20221204	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001080480	exon11	c.G1091A	p.R364Q	.	.	.
BTN2A1	11120	hgsc.bcm.edu	36	6	26571634	26571634	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001197234	exon4	c.C614T	p.T205M	.	.	.
HIST1H2BM	8342	hgsc.bcm.edu	36	6	27891059	27891059	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003521	exon1	c.C259T	p.R87C	.	.	.
PGBD1	84547	hgsc.bcm.edu	36	6	28377757	28377757	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001184743	exon7	c.A2147G	p.D716G	.	.	.
GPX5	2880	hgsc.bcm.edu	36	6	28609782	28609782	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001509	exon5	c.G525T	p.K175N	.	.	.
ABCF1	23	hgsc.bcm.edu	36	6	30653914	30653914	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001025091	exon4	c.G299A	p.R100H	.	.	.
DHX16	8449	hgsc.bcm.edu	36	6	30741270	30741270	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003587	exon5	c.A886G	p.N296D	.	.	.
DDAH2	23564	hgsc.bcm.edu	36	6	31803439	31803439	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013974	exon6	c.G601A	p.V201M	.	.	.
NOTCH4	4855	hgsc.bcm.edu	36	6	32296955	32296955	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004557	exon4	c.T577T	p.C193C	.	.	.
WDR46	9277	hgsc.bcm.edu	36	6	33362900	33362900	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164267	exon9	c.G799A	p.D267N	.	.	.
SCUBE3	222663	hgsc.bcm.edu	36	6	35309007	35309007	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152753	exon6	c.C663T	p.C221C	.	.	.
ETV7	51513	hgsc.bcm.edu	36	6	36451755	36451755	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016135	exon3	c.C178T	p.L60L	.	.	.
CDKN1A	1026	hgsc.bcm.edu	36	6	36760193	36760193	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_078467	exon3	c.C337A	p.L113M	.	.	.
ZFAND3	60685	hgsc.bcm.edu	36	6	38228055	38228055	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021943	exon6	c.G596A	p.R199H	.	.	.
KCNK17	89822	hgsc.bcm.edu	36	6	39386755	39386755	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031460	exon2	c.G244A	p.V82I	.	.	.
NFYA	4800	hgsc.bcm.edu	36	6	41165404	41165404	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002505	exon5	c.G418A	p.A140T	.	.	.
TRERF1	55809	hgsc.bcm.edu	36	6	42332817	42332817	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033502	exon11	c.C2338T	p.R780C	.	.	.
PRPH2	5961	hgsc.bcm.edu	36	6	42797582	42797582	+	Missense_Mutation	SNP	C	C	T	rs61755787	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000322	exon1	c.G469A	p.D157N	.	.	.
KIAA0240	23506	hgsc.bcm.edu	36	6	42904774	42904774	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015349	exon5	c.G725T	p.G242V	.	.	.
C6orf153	88745	hgsc.bcm.edu	36	6	43104866	43104866	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033112	exon7	c.A702T	p.K234N	.	.	.
DLK2	65989	hgsc.bcm.edu	36	6	43526754	43526754	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_023932	exon6	c.G653A	p.S218N	.	.	.
POLH	5429	hgsc.bcm.edu	36	6	43689982	43689982	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006502	exon11	c.C1852T	p.Q618X	.	.	.
TCTE1	202500	hgsc.bcm.edu	36	6	44361964	44361964	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182539	exon3	c.C561T	p.Y187Y	.	.	.
SUPT3H	8464	hgsc.bcm.edu	36	6	45030242	45030242	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181356	exon10	c.T694A	p.L232I	.	.	.
TDRD6	221400	hgsc.bcm.edu	36	6	46769109	46769109	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001010870	exon1	c.G5285A	p.G1762E	.	.	.
TFAP2B	7021	hgsc.bcm.edu	36	6	50918893	50918893	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003221	exon7	c.C1212T	p.G404G	.	.	.
PKHD1	5314	hgsc.bcm.edu	36	6	51632560	51632560	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138694	exon61	c.T10323C	p.F3441F	.	.	.
PKHD1	5314	hgsc.bcm.edu	36	6	51720593	51720593	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_170724	exon58	c.G9780A	p.W3260X	.	.	.
GCM1	8521	hgsc.bcm.edu	36	6	53101569	53101569	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003643	exon6	c.C705T	p.C235C	.	.	.
EYS	346007	hgsc.bcm.edu	36	6	66261414	66261414	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198283	exon3	c.C611A	p.P204H	.	.	.
EYS	346007	hgsc.bcm.edu	36	6	66261435	66261435	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198283	exon3	c.C590T	p.T197I	.	.	.
BAI3	577	hgsc.bcm.edu	36	6	70094434	70094434	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001704	exon22	c.T2967G	p.G989G	.	.	.
COL19A1	1310	hgsc.bcm.edu	36	6	70703427	70703427	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001858	exon8	c.T777G	p.I259M	.	.	.
RREB1	6239	hgsc.bcm.edu	36	6	7176009	7176009	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001003700	exon10	c.C2678T	p.A893V	.	.	.
CD109	135228	hgsc.bcm.edu	36	6	74532587	74532587	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133493	exon11	c.C1321A	p.L441I	.	.	.
DSP	1832	hgsc.bcm.edu	36	6	7528160	7528160	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001008844	exon24	c.A3869T	p.E1290V	.	.	.
MUTED	63915	hgsc.bcm.edu	36	6	7960902	7960902	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201280	exon5	c.A543G	p.L181L	.	.	.
IBTK	25998	hgsc.bcm.edu	36	6	82984555	82984555	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015525	exon10	c.G1267A	p.V423I	.	.	.
SLC35B3	51000	hgsc.bcm.edu	36	6	8375224	8375224	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142541	exon3	c.C169G	p.P57A	.	.	.
DOPEY1	23033	hgsc.bcm.edu	36	6	83876662	83876662	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015018	exon6	c.A591G	p.L197L	.	.	.
ME1	4199	hgsc.bcm.edu	36	6	83993849	83993849	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002395	exon11	c.G1199A	p.R400Q	.	.	.
TBX18	9096	hgsc.bcm.edu	36	6	85503160	85503160	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001080508	exon8	c.A1786C	p.T596P	.	.	.
MDN1	23195	hgsc.bcm.edu	36	6	90459470	90459470	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014611	exon63	c.G10000A	p.V3334I	.	.	.
MDN1	23195	hgsc.bcm.edu	36	6	90539136	90539136	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014611	exon14	c.C1960T	p.R654W	.	.	.
POU3F2	5454	hgsc.bcm.edu	36	6	99390543	99390543	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005604	exon1	c.G1073A	p.R358Q	.	.	.
MYH4	4622	hgsc.bcm.edu	36	17	10287535	10287535	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017533	exon40	c.G5702A	p.R1901H	.	.	.
MYH3	4621	hgsc.bcm.edu	36	17	10481956	10481956	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002470	exon27	c.C3751T	p.R1251X	.	.	.
EPN2	22905	hgsc.bcm.edu	36	17	19127197	19127197	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014964	exon3	c.A172G	p.S58G	.	.	.
KCNJ12	3768	hgsc.bcm.edu	36	17	21259511	21259511	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021012	exon3	c.G264A	p.S88S	.	.	.
FOXN1	8456	hgsc.bcm.edu	36	17	23885569	23885569	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003593	exon6	c.C1021T	p.R341C	.	.	.
SUPT6H	6830	hgsc.bcm.edu	36	17	24038533	24038533	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003170	exon23	c.C2923T	p.R975C	.	.	.
SUPT6H	6830	hgsc.bcm.edu	36	17	24046568	24046568	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003170	exon29	c.C3846T	p.R1282R	.	.	.
CORO6	84940	hgsc.bcm.edu	36	17	24968118	24968118	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032854	exon6	c.C822T	p.Y274Y	.	.	.
SSH2	85464	hgsc.bcm.edu	36	17	25281141	25281141	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033389	exon1	c.G4A	p.A2T	.	.	.
SLC6A4	6532	hgsc.bcm.edu	36	17	25561765	25561765	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001045	exon11	c.C1343T	p.T448M	.	.	.
OMG	4974	hgsc.bcm.edu	36	17	26646585	26646585	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002544	exon2	c.A891G	p.Q297Q	.	.	.
CACNB1	782	hgsc.bcm.edu	36	17	34601271	34601271	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000723	exon3	c.G273A	p.A91A	.	.	.
STARD3	10948	hgsc.bcm.edu	36	17	35063493	35063493	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001165938	exon2	c.G183A	p.L61L	.	.	.
ERBB2	2064	hgsc.bcm.edu	36	17	35135147	35135147	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001005862	exon25	c.G2601A	p.R867R	.	.	.
CASC3	22794	hgsc.bcm.edu	36	17	35573836	35573836	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007359	exon7	c.G1362T	p.P454P	.	.	.
ITGAE	3682	hgsc.bcm.edu	36	17	3582497	3582497	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002208	exon22	c.A2668G	p.N890D	.	.	.
TNS4	84951	hgsc.bcm.edu	36	17	35905961	35905961	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032865	exon2	c.G243A	p.P81P	.	.	.
KRT37	8688	hgsc.bcm.edu	36	17	36833890	36833890	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003770	exon1	c.G412A	p.E138K	.	.	.
KLHL11	55175	hgsc.bcm.edu	36	17	37264184	37264184	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018143	exon2	c.A1461C	p.A487A	.	.	.
AOC3	8639	hgsc.bcm.edu	36	17	38258060	38258060	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003734	exon1	c.G1174T	p.G392C	.	.	.
ZZEF1	23140	hgsc.bcm.edu	36	17	3867770	3867770	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015113	exon48	c.C7645T	p.R2549W	.	.	.
ZZEF1	23140	hgsc.bcm.edu	36	17	3871307	3871307	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015113	exon45	c.C7269T	p.H2423H	.	.	.
DHX8	1659	hgsc.bcm.edu	36	17	38926662	38926662	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004941	exon8	c.G1094A	p.R365Q	.	.	.
UBTF	7343	hgsc.bcm.edu	36	17	39648566	39648566	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001076683	exon5	c.G456A	p.E152E	.	.	.
EFTUD2	9343	hgsc.bcm.edu	36	17	40284244	40284244	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004247	exon28	c.G2843T	p.S948I	.	.	.
WNT9B	7484	hgsc.bcm.edu	36	17	42307693	42307693	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003396	exon3	c.G562A	p.A188T	.	.	.
FAM117A	81558	hgsc.bcm.edu	36	17	45149916	45149916	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030802	exon6	c.C868T	p.R290W	.	.	.
PSMB6	5694	hgsc.bcm.edu	36	17	4648034	4648034	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002798	exon4	c.C402T	p.I134I	.	.	.
KIF2B	84643	hgsc.bcm.edu	36	17	49256827	49256827	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032559	exon1	c.C1434T	p.L478L	.	.	.
COX11	1353	hgsc.bcm.edu	36	17	50400979	50400979	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004375	exon1	c.A28G	p.R10G	.	.	.
CLTC	1213	hgsc.bcm.edu	36	17	55093707	55093707	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004859	exon8	c.A1289T	p.Y430F	.	.	.
WSCD1	23302	hgsc.bcm.edu	36	17	5962068	5962068	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015253	exon8	c.G1211A	p.R404H	.	.	.
BPTF	2186	hgsc.bcm.edu	36	17	63355103	63355103	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182641	exon16	c.T5922C	p.A1974A	.	.	.
ARSG	22901	hgsc.bcm.edu	36	17	63876455	63876455	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014960	exon7	c.G876T	p.K292N	.	.	.
TTYH2	94015	hgsc.bcm.edu	36	17	69751764	69751764	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032646	exon6	c.C785T	p.A262V	.	.	.
TMEM104	54868	hgsc.bcm.edu	36	17	70344345	70344345	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017728	exon10	c.G1415T	p.G472V	.	.	.
GRIN2C	2905	hgsc.bcm.edu	36	17	70358096	70358096	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000835	exon6	c.C1335T	p.D445D	.	.	.
DVL2	1856	hgsc.bcm.edu	36	17	7070538	7070538	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004422	exon14	c.C1688T	p.P563L	.	.	.
QRICH2	84074	hgsc.bcm.edu	36	17	71799278	71799278	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032134	exon4	c.T2627C	p.V876A	.	.	.
DNAH2	146754	hgsc.bcm.edu	36	17	7578578	7578578	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020877	exon6	c.G805T	p.G269X	.	.	.
SECTM1	6398	hgsc.bcm.edu	36	17	77874096	77874096	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003004	exon4	c.G484A	p.A162T	.	.	.
C17orf62	79415	hgsc.bcm.edu	36	17	77997796	77997796	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001100407	exon5	c.G193C	p.D65H	.	.	.
AURKB	9212	hgsc.bcm.edu	36	17	8051266	8051266	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004217	exon5	c.C351T	p.G117G	.	.	.
GLP2R	9340	hgsc.bcm.edu	36	17	9680439	9680439	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004246	exon3	c.C304T	p.Q102X	.	.	.
ARHGAP27	201176	hgsc.bcm.edu	36	17	40835906	40835907	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	GA	GA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199282	exon9	c.676_677del	p.226_226del	.	.	.
USP32	84669	hgsc.bcm.edu	36	17	55720683	55720684	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	AG	AG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032582	exon5	c.553_554del	p.185_185del	.	.	.
PRSS7	5651	hgsc.bcm.edu	36	21	18564236	18564236	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002772	exon25	c.A2981G	p.K994R	.	.	.
ADAMTS1	9510	hgsc.bcm.edu	36	21	27138444	27138444	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006988	exon1	c.C701T	p.P234L	.	.	.
C21orf45	54069	hgsc.bcm.edu	36	21	32564663	32564663	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018944	exon3	c.C450T	p.Y150Y	.	.	.
RSPH1	89765	hgsc.bcm.edu	36	21	42770514	42770514	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080860	exon7	c.C683T	p.P228L	.	.	.
RSPH1	89765	hgsc.bcm.edu	36	21	42786196	42786196	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080860	exon2	c.C117T	p.P39P	.	.	.
PDE9A	5152	hgsc.bcm.edu	36	21	43055359	43055359	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001001574	exon12	c.G925A	p.E309K	.	.	.
CBS	875	hgsc.bcm.edu	36	21	43352088	43352088	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001178008	exon14	c.C1283T	p.T428I	.	.	.
TRPM2	7226	hgsc.bcm.edu	36	21	44635301	44635301	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003307	exon10	c.C1405T	p.R469C	.	.	.
MYH11	4629	hgsc.bcm.edu	36	16	15824684	15824684	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040114	exon3	c.G431A	p.G144D	.	.	.
ACSM5	54988	hgsc.bcm.edu	36	16	20355900	20355900	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017888	exon11	c.C1334A	p.S445X	.	.	.
GGA2	23062	hgsc.bcm.edu	36	16	23404887	23404887	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015044	exon8	c.A748G	p.S250G	.	.	.
ERN2	10595	hgsc.bcm.edu	36	16	23611051	23611051	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033266	exon18	c.C2347A	p.L783I	.	.	.
CD19	930	hgsc.bcm.edu	36	16	28850870	28850870	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001178098	exon1	c.G48A	p.M16I	.	.	.
GDPD3	79153	hgsc.bcm.edu	36	16	30023737	30023737	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024307	exon10	c.G914T	p.R305L	.	.	.
CLUAP1	23059	hgsc.bcm.edu	36	16	3502438	3502438	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015041	exon5	c.G454A	p.A152T	.	.	.
CREBBP	1387	hgsc.bcm.edu	36	16	3721415	3721415	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004380	exon30	c.G4951A	p.D1651N	.	.	.
GPT2	84706	hgsc.bcm.edu	36	16	45518443	45518443	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142466	exon11	c.C1174A	p.H392N	.	.	.
NETO2	81831	hgsc.bcm.edu	36	16	45719841	45719841	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018092	exon4	c.G377A	p.S126N	.	.	.
ABCC11	85320	hgsc.bcm.edu	36	16	46784086	46784086	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145186	exon20	c.G2552A	p.G851D	.	.	.
ANKS3	124401	hgsc.bcm.edu	36	16	4689172	4689172	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133450	exon12	c.G1291A	p.A431T	.	.	.
ANKS3	124401	hgsc.bcm.edu	36	16	4691049	4691049	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133450	exon11	c.C1207T	p.R403C	.	.	.
CSNK2A2	1459	hgsc.bcm.edu	36	16	56758653	56758653	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001896	exon8	c.C685A	p.R229R	.	.	.
PIGQ	9091	hgsc.bcm.edu	36	16	570890	570890	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_148920	exon9	c.T1448C	p.L483P	.	.	.
SMPD3	55512	hgsc.bcm.edu	36	16	66962396	66962396	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018667	exon3	c.G1190A	p.C397Y	.	.	.
HAS3	3038	hgsc.bcm.edu	36	16	67709771	67709771	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138612	exon4	c.G751T	p.G251C	.	.	.
NFAT5	10725	hgsc.bcm.edu	36	16	68238676	68238676	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138714	exon5	c.T216C	p.P72P	.	.	.
WWP2	11060	hgsc.bcm.edu	36	16	68528987	68528987	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199424	exon11	c.C957T	p.S319S	.	.	.
ZNF19	7567	hgsc.bcm.edu	36	16	70067281	70067281	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006961	exon6	c.C670T	p.R224X	.	.	.
RFWD3	55159	hgsc.bcm.edu	36	16	73252688	73252688	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018124	exon2	c.A161G	p.Q54R	.	.	.
MLKL	197259	hgsc.bcm.edu	36	16	73287066	73287066	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152649	exon2	c.C91A	p.L31M	.	.	.
TAF1C	9013	hgsc.bcm.edu	36	16	82776089	82776089	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005679	exon2	c.T7C	p.F3L	.	.	.
GALNS	2588	hgsc.bcm.edu	36	16	87429187	87429187	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000512	exon8	c.C833T	p.A278V	.	.	.
MPPE1	65258	hgsc.bcm.edu	36	18	11876525	11876525	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_023075	exon9	c.C840T	p.D280D	.	.	.
CEP192	55125	hgsc.bcm.edu	36	18	13086300	13086300	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032142	exon36	c.C6551T	p.A2184V	.	.	.
RNMT	8731	hgsc.bcm.edu	36	18	13730223	13730223	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003799	exon6	c.G737A	p.R246H	.	.	.
LAMA3	3909	hgsc.bcm.edu	36	18	19750633	19750633	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001127718	exon22	c.C2904A	p.G968G	.	.	.
ZNF521	25925	hgsc.bcm.edu	36	18	21060269	21060269	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015461	exon4	c.T1611G	p.C537W	.	.	.
DSC3	1825	hgsc.bcm.edu	36	18	26866191	26866191	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001941	exon2	c.C119A	p.P40H	.	.	.
SMAD2	4087	hgsc.bcm.edu	36	18	43626066	43626066	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135937	exon8	c.C1011T	p.G337G	.	.	.
MALT1	10892	hgsc.bcm.edu	36	18	54541366	54541366	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173844	exon9	c.G1092T	p.Q364H	.	.	.
ZNF532	55205	hgsc.bcm.edu	36	18	54737270	54737270	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018181	exon4	c.G771A	p.A257A	.	.	.
SERPINB12	89777	hgsc.bcm.edu	36	18	59379412	59379412	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080474	exon4	c.C499A	p.Q167K	.	.	.
PTPRM	5797	hgsc.bcm.edu	36	18	7945265	7945265	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002845	exon7	c.G985T	p.D329Y	.	.	.
ADCYAP1	116	hgsc.bcm.edu	36	18	895403	895403	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001099733	exon2	c.G16A	p.G6R	.	.	.
GPR128	84873	hgsc.bcm.edu	36	3	101847638	101847638	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032787	exon9	c.C1106G	p.P369R	.	.	.
CEP97	79598	hgsc.bcm.edu	36	3	102959307	102959307	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024548	exon9	c.G1167A	p.T389T	.	.	.
GHRL	51738	hgsc.bcm.edu	36	3	10306508	10306508	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001134941	exon3	c.G160T	p.G54C	.	.	.
CD96	10225	hgsc.bcm.edu	36	3	112780635	112780635	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005816	exon4	c.T615C	p.D205D	.	.	.
PHLDB2	90102	hgsc.bcm.edu	36	3	113146871	113146871	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001134439	exon9	c.G2464A	p.V822I	.	.	.
HCLS1	3059	hgsc.bcm.edu	36	3	122833492	122833492	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005335	exon14	c.C1352T	p.P451L	.	.	.
ADCY5	111	hgsc.bcm.edu	36	3	124529223	124529223	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_183357	exon7	c.G1879A	p.E627K	.	.	.
KALRN	8997	hgsc.bcm.edu	36	3	125527578	125527578	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003947	exon7	c.A1148G	p.H383R	.	.	.
RAF1	5894	hgsc.bcm.edu	36	3	12616767	12616767	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002880	exon9	c.G874A	p.A292T	.	.	.
GATA2	2624	hgsc.bcm.edu	36	3	129685506	129685506	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032638	exon4	c.G904T	p.A302S	.	.	.
PLXND1	23129	hgsc.bcm.edu	36	3	130787511	130787511	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015103	exon5	c.G1825A	p.E609K	.	.	.
SLCO2A1	6578	hgsc.bcm.edu	36	3	135152828	135152828	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005630	exon6	c.C775T	p.L259L	.	.	.
HDAC11	79885	hgsc.bcm.edu	36	3	13521109	13521109	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001136041	exon10	c.C817A	p.L273I	.	.	.
PIK3CB	5291	hgsc.bcm.edu	36	3	139960820	139960820	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006219	exon1	c.C56T	p.A19V	.	.	.
XRN1	54464	hgsc.bcm.edu	36	3	143578068	143578068	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019001	exon24	c.G2774T	p.G925V	.	.	.
PLS1	5357	hgsc.bcm.edu	36	3	143913444	143913444	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002670	exon16	c.T1795C	p.Y599H	.	.	.
DHX36	170506	hgsc.bcm.edu	36	3	155516636	155516636	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114397	exon2	c.T254C	p.V85A	.	.	.
RFTN1	23180	hgsc.bcm.edu	36	3	16343367	16343367	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015150	exon8	c.C1167G	p.D389E	.	.	.
BCHE	590	hgsc.bcm.edu	36	3	167030288	167030288	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000055	exon2	c.C1228T	p.P410S	.	.	.
GOLIM4	27333	hgsc.bcm.edu	36	3	169210848	169210848	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014498	exon16	c.G1994A	p.R665H	.	.	.
MFN1	55669	hgsc.bcm.edu	36	3	180586075	180586075	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033540	exon15	c.C1687T	p.P563S	.	.	.
GNB4	59345	hgsc.bcm.edu	36	3	180626640	180626640	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021629	exon2	c.C43T	p.R15W	.	.	.
USP13	8975	hgsc.bcm.edu	36	3	180945690	180945690	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003940	exon13	c.C1700T	p.A567V	.	.	.
SOX2	6657	hgsc.bcm.edu	36	3	182913099	182913099	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003106	exon1	c.A257G	p.E86G	.	.	.
ATP11B	23200	hgsc.bcm.edu	36	3	184118546	184118546	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014616	exon30	c.G3494A	p.S1165N	.	.	.
PARL	55486	hgsc.bcm.edu	36	3	185034053	185034053	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001037639	exon8	c.G799A	p.A267T	.	.	.
RTP1	132112	hgsc.bcm.edu	36	3	188398190	188398190	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153708	exon1	c.C193A	p.L65I	.	.	.
MASP1	5648	hgsc.bcm.edu	36	3	188436777	188436777	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139125	exon11	c.C1576T	p.R526X	.	.	.
MASP1	5648	hgsc.bcm.edu	36	3	188461299	188461299	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001031849	exon4	c.C471T	p.C157C	.	.	.
TPRG1	285386	hgsc.bcm.edu	36	3	190407983	190407983	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198485	exon2	c.G116T	p.R39I	.	.	.
TP63	8626	hgsc.bcm.edu	36	3	191008845	191008845	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114980	exon2	c.G133A	p.A45T	.	.	.
TMEM207	131920	hgsc.bcm.edu	36	3	191650257	191650257	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207316	exon1	c.G36A	p.A12A	.	.	.
PCYT1A	5130	hgsc.bcm.edu	36	3	197458665	197458665	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005017	exon6	c.G456A	p.T152T	.	.	.
SENP5	205564	hgsc.bcm.edu	36	3	198111296	198111296	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152699	exon4	c.C1724T	p.A575V	.	.	.
KAT2B	8850	hgsc.bcm.edu	36	3	20088894	20088894	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003884	exon2	c.C369T	p.A123A	.	.	.
RARB	5915	hgsc.bcm.edu	36	3	25445242	25445242	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000965	exon1	c.G16A	p.D6N	.	.	.
CNTN4	152330	hgsc.bcm.edu	36	3	3070580	3070580	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_175613	exon15	c.T1917C	p.D639D	.	.	.
GOLGA4	2803	hgsc.bcm.edu	36	3	37363779	37363779	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001172713	exon21	c.T6609C	p.G2203G	.	.	.
ITGA9	3680	hgsc.bcm.edu	36	3	37535798	37535798	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002207	exon11	c.G1185T	p.A395A	.	.	.
LRRN1	57633	hgsc.bcm.edu	36	3	3862242	3862242	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020873	exon2	c.A917G	p.Y306C	.	.	.
SCN10A	6336	hgsc.bcm.edu	36	3	38725981	38725981	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006514	exon24	c.A4273G	p.K1425E	.	.	.
SCN10A	6336	hgsc.bcm.edu	36	3	38745211	38745211	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006514	exon15	c.G2466A	p.A822A	.	.	.
WDR48	57599	hgsc.bcm.edu	36	3	39108191	39108191	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020839	exon17	c.A1740T	p.L580F	.	.	.
CSRNP1	64651	hgsc.bcm.edu	36	3	39160881	39160881	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033027	exon4	c.C531T	p.D177D	.	.	.
XIRP1	165904	hgsc.bcm.edu	36	3	39203224	39203224	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_194293	exon2	c.C2717T	p.A906V	.	.	.
ZDHHC3	51304	hgsc.bcm.edu	36	3	44943230	44943230	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135179	exon7	c.C855T	p.A285A	.	.	.
FYCO1	79443	hgsc.bcm.edu	36	3	45989629	45989629	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024513	exon6	c.C494T	p.A165V	.	.	.
DHX30	22907	hgsc.bcm.edu	36	3	47864965	47864965	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_138615	exon16	c.G2496A	p.A832A	.	.	.
NME6	10201	hgsc.bcm.edu	36	3	48311718	48311718	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005793	exon5	c.G269A	p.R90Q	.	.	.
NDUFAF3	25915	hgsc.bcm.edu	36	3	49035168	49035168	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199069	exon3	c.C300G	p.D100E	.	.	.
RBM6	10180	hgsc.bcm.edu	36	3	50070927	50070927	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005777	exon10	c.C2058T	p.N686N	.	.	.
TEX264	51368	hgsc.bcm.edu	36	3	51708537	51708537	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015926	exon4	c.C556T	p.R186W	.	.	.
PCBP4	57060	hgsc.bcm.edu	36	3	51967276	51967276	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033010	exon13	c.C1053T	p.A351A	.	.	.
FLNB	2317	hgsc.bcm.edu	36	3	58067541	58067541	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164317	exon12	c.C1842T	p.G614G	.	.	.
FLNB	2317	hgsc.bcm.edu	36	3	58096780	58096780	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164317	exon29	c.A4799G	p.H1600R	.	.	.
PDZRN3	23024	hgsc.bcm.edu	36	3	73516390	73516390	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015009	exon10	c.G2017A	p.A673T	.	.	.
CADM2	253559	hgsc.bcm.edu	36	3	86015196	86015196	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001167674	exon3	c.G277A	p.D93N	.	.	.
EPHA3	2042	hgsc.bcm.edu	36	3	89473766	89473766	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005233	exon5	c.G1142A	p.R381H	.	.	.
BRPF1	7862	hgsc.bcm.edu	36	3	9763984	9763984	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004634	exon14	c.G3596A	p.R1199H	.	.	.
NUAK1	9891	hgsc.bcm.edu	36	12	105056428	105056428	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014840	exon1	c.A134G	p.H45R	.	.	.
TCP11L2	255394	hgsc.bcm.edu	36	12	105254015	105254015	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152772	exon8	c.T1036C	p.S346P	.	.	.
ANKRD13A	88455	hgsc.bcm.edu	36	12	108950802	108950802	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033121	exon10	c.C1048T	p.P350S	.	.	.
ACAD10	80724	hgsc.bcm.edu	36	12	110669364	110669364	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025247	exon15	c.C2385T	p.T795T	.	.	.
DTX1	1840	hgsc.bcm.edu	36	12	112019069	112019069	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004416	exon9	c.A1805G	p.D602G	.	.	.
SLC24A6	80024	hgsc.bcm.edu	36	12	112229957	112229957	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024959	exon13	c.C1333T	p.R445W	.	.	.
RBM19	9904	hgsc.bcm.edu	36	12	112781076	112781076	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016196	exon22	c.G2567T	p.G856V	.	.	.
MED13L	23389	hgsc.bcm.edu	36	12	114913714	114913714	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015335	exon17	c.C3428T	p.A1143V	.	.	.
PITPNM2	57605	hgsc.bcm.edu	36	12	122041077	122041077	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020845	exon16	c.C2537T	p.A846V	.	.	.
ATP6V0A2	23545	hgsc.bcm.edu	36	12	122799258	122799258	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012463	exon15	c.T1908C	p.S636S	.	.	.
DHX37	57647	hgsc.bcm.edu	36	12	124017352	124017352	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032656	exon12	c.G1530A	p.S510S	.	.	.
TMEM132D	121256	hgsc.bcm.edu	36	12	128260026	128260026	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133448	exon5	c.G1435T	p.V479L	.	.	.
GPRC5A	9052	hgsc.bcm.edu	36	12	12952864	12952864	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003979	exon2	c.C414T	p.A138A	.	.	.
GPR133	283383	hgsc.bcm.edu	36	12	130054790	130054790	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198827	exon11	c.G1251A	p.R417R	.	.	.
GOLGA3	2802	hgsc.bcm.edu	36	12	131891445	131891445	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001172557	exon7	c.G1527T	p.E509D	.	.	.
ART4	420	hgsc.bcm.edu	36	12	14884845	14884845	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021071	exon2	c.G654T	p.Q218H	.	.	.
ADIPOR2	79602	hgsc.bcm.edu	36	12	1763358	1763358	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024551	exon7	c.T890C	p.V297A	.	.	.
ITFG2	55846	hgsc.bcm.edu	36	12	2799587	2799587	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018463	exon5	c.G481T	p.G161C	.	.	.
IPO8	10526	hgsc.bcm.edu	36	12	30728599	30728599	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006390	exon3	c.G226A	p.G76R	.	.	.
PRMT8	56341	hgsc.bcm.edu	36	12	3548990	3548990	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019854	exon6	c.C711T	p.H237H	.	.	.
ABCD2	225	hgsc.bcm.edu	36	12	38287715	38287715	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005164	exon3	c.G1189A	p.A397T	.	.	.
SPATS2	65244	hgsc.bcm.edu	36	12	48169528	48169528	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_023071	exon5	c.G119A	p.R40H	.	.	.
AQP6	363	hgsc.bcm.edu	36	12	48653248	48653248	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001652	exon1	c.C25T	p.R9C	.	.	.
KRT84	3890	hgsc.bcm.edu	36	12	51065293	51065293	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033045	exon1	c.A344G	p.Y115C	.	.	.
KRT6A	3853	hgsc.bcm.edu	36	12	51172761	51172761	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005554	exon1	c.G479A	p.R160Q	.	.	.
SPRYD3	84926	hgsc.bcm.edu	36	12	51746737	51746737	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032840	exon9	c.G908T	p.G303V	.	.	.
RARG	5916	hgsc.bcm.edu	36	12	51907533	51907533	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000966	exon3	c.G64T	p.G22W	.	.	.
ESPL1	9700	hgsc.bcm.edu	36	12	51957976	51957976	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012291	exon11	c.C2329T	p.Q777X	.	.	.
HOXC13	3229	hgsc.bcm.edu	36	12	52625286	52625286	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017410	exon2	c.G972A	p.A324A	.	.	.
SMARCC2	6601	hgsc.bcm.edu	36	12	54850251	54850251	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_139067	exon23	c.G2356T	p.G786W	.	.	.
LRP1	4035	hgsc.bcm.edu	36	12	55882527	55882527	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002332	exon68	c.G10651A	p.G3551S	.	.	.
VWF	7450	hgsc.bcm.edu	36	12	5971356	5971356	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000552	exon38	c.C6688A	p.H2230N	.	.	.
MON2	23041	hgsc.bcm.edu	36	12	61240707	61240707	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015026	exon26	c.A3579G	p.V1193V	.	.	.
TMEM5	10329	hgsc.bcm.edu	36	12	62489007	62489007	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014254	exon6	c.A1200C	p.K400N	.	.	.
TBK1	29110	hgsc.bcm.edu	36	12	63164426	63164426	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013254	exon9	c.C1069T	p.R357X	.	.	.
HELB	92797	hgsc.bcm.edu	36	12	65005133	65005133	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033647	exon11	c.G2630A	p.R877H	.	.	.
HELB	92797	hgsc.bcm.edu	36	12	65011585	65011585	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033647	exon12	c.T3055C	p.L1019L	.	.	.
MLF2	8079	hgsc.bcm.edu	36	12	6729394	6729394	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005439	exon7	c.G440A	p.G147E	.	.	.
GNB3	2784	hgsc.bcm.edu	36	12	6825178	6825178	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002075	exon10	c.C867T	p.Y289Y	.	.	.
RBP5	83758	hgsc.bcm.edu	36	12	7172254	7172254	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031491	exon2	c.C101T	p.A34V	.	.	.
CSRP2	1466	hgsc.bcm.edu	36	12	75784140	75784140	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001321	exon2	c.G32T	p.G11V	.	.	.
E2F7	144455	hgsc.bcm.edu	36	12	75951810	75951810	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_203394	exon8	c.A1267T	p.K423X	.	.	.
GDF3	9573	hgsc.bcm.edu	36	12	7734403	7734403	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020634	exon2	c.C433T	p.L145L	.	.	.
C3AR1	719	hgsc.bcm.edu	36	12	8103039	8103039	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004054	exon2	c.C1010T	p.T337M	.	.	.
CLEC4D	338339	hgsc.bcm.edu	36	12	8564117	8564117	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080387	exon5	c.G413A	p.R138Q	.	.	.
PHC1	1911	hgsc.bcm.edu	36	12	8965611	8965611	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004426	exon5	c.C454T	p.R152W	.	.	.
RAD52	5893	hgsc.bcm.edu	36	12	909297	909297	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_134424	exon5	c.C297G	p.N99K	.	.	.
BTG1	694	hgsc.bcm.edu	36	12	91062093	91062093	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001731	exon2	c.G410A	p.S137N	.	.	.
METAP2	10988	hgsc.bcm.edu	36	12	94431742	94431742	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006838	exon11	c.G1368A	p.A456A	.	.	.
TMPO	7112	hgsc.bcm.edu	36	12	97451896	97451896	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003276	exon4	c.C1730G	p.A577G	.	.	.
IKIP	121457	hgsc.bcm.edu	36	12	97532116	97532116	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201612	exon3	c.A431G	p.N144S	.	.	.
GAS2L3	283431	hgsc.bcm.edu	36	12	99541923	99541923	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_174942	exon10	c.A1209G	p.S403S	.	.	.
SBNO1	55206	hgsc.bcm.edu	36	12	122360236	122360236	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018183	exon25	c.3413delA	p.N1138fs	.	.	.
APAF1	317	hgsc.bcm.edu	36	12	97595338	97595339	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	AA	AA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013229	exon13	c.1765_1766del	p.589_589del	.	.	.
LTK	4058	hgsc.bcm.edu	36	15	39585439	39585439	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002344	exon12	c.C1598A	p.P533H	.	.	.
RPAP1	26015	hgsc.bcm.edu	36	15	39616482	39616482	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015540	exon2	c.C134T	p.S45L	.	.	.
TYRO3	7301	hgsc.bcm.edu	36	15	39650171	39650171	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006293	exon12	c.G1561A	p.G521S	.	.	.
ZFP106	64397	hgsc.bcm.edu	36	15	40527932	40527932	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022473	exon3	c.G2696T	p.R899M	.	.	.
FBN1	2200	hgsc.bcm.edu	36	15	46495074	46495074	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000138	exon64	c.G8002T	p.G2668C	.	.	.
FBN1	2200	hgsc.bcm.edu	36	15	46495158	46495158	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000138	exon64	c.G7918A	p.E2640K	.	.	.
FBN1	2200	hgsc.bcm.edu	36	15	46501524	46501524	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000138	exon61	c.G7487A	p.C2496Y	.	.	.
FBN1	2200	hgsc.bcm.edu	36	15	46566836	46566836	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000138	exon28	c.G3428A	p.G1143D	.	.	.
FBN1	2200	hgsc.bcm.edu	36	15	46574632	46574632	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000138	exon22	c.C2657T	p.P886L	.	.	.
SECISBP2L	9728	hgsc.bcm.edu	36	15	47079434	47079434	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014701	exon15	c.G2156T	p.R719L	.	.	.
USP8	9101	hgsc.bcm.edu	36	15	48575541	48575541	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001128611	exon18	c.C2863T	p.P955S	.	.	.
CYP19A1	1588	hgsc.bcm.edu	36	15	49290361	49290361	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031226	exon11	c.A1448G	p.E483G	.	.	.
DMXL2	23312	hgsc.bcm.edu	36	15	49621874	49621874	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015263	exon9	c.T1053C	p.H351H	.	.	.
WDR72	256764	hgsc.bcm.edu	36	15	51695640	51695640	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182758	exon15	c.T2055C	p.D685D	.	.	.
TCF12	6938	hgsc.bcm.edu	36	15	55312339	55312339	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207037	exon11	c.C963T	p.S321S	.	.	.
TLN2	83660	hgsc.bcm.edu	36	15	60778349	60778349	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015059	exon13	c.C1578T	p.G526G	.	.	.
CORO2B	10391	hgsc.bcm.edu	36	15	66790129	66790129	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006091	exon4	c.G338A	p.R113Q	.	.	.
ISLR2	57611	hgsc.bcm.edu	36	15	72212469	72212469	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020851	exon3	c.C321T	p.S107S	.	.	.
STRA6	64220	hgsc.bcm.edu	36	15	72261588	72261588	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199041	exon16	c.A1532C	p.E511A	.	.	.
SEMA7A	8482	hgsc.bcm.edu	36	15	72498289	72498289	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003612	exon2	c.T236C	p.F79S	.	.	.
ADAMTSL3	57188	hgsc.bcm.edu	36	15	82372899	82372899	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207517	exon16	c.G1752A	p.V584V	.	.	.
ZSCAN2	54993	hgsc.bcm.edu	36	15	82966008	82966008	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181877	exon3	c.C1578T	p.G526G	.	.	.
ABHD2	11057	hgsc.bcm.edu	36	15	87520122	87520122	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152924	exon6	c.G614A	p.G205D	.	.	.
SLCO3A1	28232	hgsc.bcm.edu	36	15	90507078	90507078	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013272	exon10	c.C1842T	p.C614C	.	.	.
ST8SIA2	8128	hgsc.bcm.edu	36	15	90778603	90778603	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006011	exon3	c.G284T	p.R95M	.	.	.
ADH1B	125	hgsc.bcm.edu	36	4	100461504	100461504	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000668	exon1	c.C8T	p.T3I	.	.	.
ENPEP	2028	hgsc.bcm.edu	36	4	111700268	111700268	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001977	exon19	c.A2659G	p.R887G	ENPEP,breast,NS,Substitution - Missense,-1	.	.
ANK2	287	hgsc.bcm.edu	36	4	114429086	114429086	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020977	exon20	c.A2272G	p.T758A	.	.	.
ANK2	287	hgsc.bcm.edu	36	4	114497951	114497951	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001148	exon38	c.G8728A	p.V2910M	.	.	.
EXOSC9	5393	hgsc.bcm.edu	36	4	122950622	122950622	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001034194	exon7	c.G656A	p.G219D	.	.	.
CCNA2	890	hgsc.bcm.edu	36	4	122958269	122958269	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001237	exon8	c.A1273G	p.N425D	.	.	.
ANKRD50	57182	hgsc.bcm.edu	36	4	125810812	125810812	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001167882	exon3	c.C2533A	p.H845N	.	.	.
BOD1L	259282	hgsc.bcm.edu	36	4	13214414	13214414	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_148894	exon10	c.T3208G	p.L1070V	.	.	.
PCDH10	57575	hgsc.bcm.edu	36	4	134303776	134303776	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032961	exon4	c.C2992T	p.R998W	.	.	.
FBXW7	55294	hgsc.bcm.edu	36	4	153552369	153552369	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033632	exon2	c.C37T	p.R13X	FBXW7,kidney,NS,Substitution - Nonsense,0	.	.
MND1	84057	hgsc.bcm.edu	36	4	154537921	154537921	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032117	exon6	c.T452G	p.V151G	.	.	.
DCHS2	54798	hgsc.bcm.edu	36	4	155445400	155445400	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017639	exon17	c.G4111A	p.A1371T	.	.	.
GRIA2	2891	hgsc.bcm.edu	36	4	158453425	158453425	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001083620	exon4	c.G473A	p.R158Q	.	.	.
TMEM144	55314	hgsc.bcm.edu	36	4	159373548	159373548	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018342	exon7	c.G459A	p.T153T	.	.	.
C4orf39	152756	hgsc.bcm.edu	36	4	166097782	166097782	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153027	exon1	c.G158A	p.R53H	.	.	.
QDPR	5860	hgsc.bcm.edu	36	4	17103048	17103048	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000320	exon5	c.C450T	p.Y150Y	.	.	.
MFAP3L	9848	hgsc.bcm.edu	36	4	171149486	171149486	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021647	exon3	c.G848T	p.R283M	.	.	.
AADAT	51166	hgsc.bcm.edu	36	4	171244928	171244928	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182662	exon4	c.C283T	p.H95Y	.	.	.
GPM6A	2823	hgsc.bcm.edu	36	4	176859754	176859754	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_201591	exon2	c.A196C	p.R66R	.	.	.
DCTD	1635	hgsc.bcm.edu	36	4	184073199	184073199	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001921	exon3	c.G115A	p.A39T	.	.	.
ACSL1	2180	hgsc.bcm.edu	36	4	185934674	185934674	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001995	exon7	c.C714T	p.G238G	.	.	.
TRIML2	205860	hgsc.bcm.edu	36	4	189263079	189263079	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173553	exon2	c.A41C	p.K14T	.	.	.
NOP14	8602	hgsc.bcm.edu	36	4	2913179	2913179	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003703	exon15	c.C2127T	p.H709H	.	.	.
TLR6	10333	hgsc.bcm.edu	36	4	38505217	38505217	+	Missense_Mutation	SNP	C	C	T	rs55963748	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006068	exon2	c.G2273A	p.R758Q	.	.	.
RBM47	54502	hgsc.bcm.edu	36	4	40135115	40135115	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019027	exon3	c.G553A	p.A185T	.	.	.
UCHL1	7345	hgsc.bcm.edu	36	4	40958552	40958552	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004181	exon5	c.C389T	p.A130V	.	.	.
WDR21B	285429	hgsc.bcm.edu	36	4	41678801	41678801	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001029955	exon1	c.G235A	p.A79T	.	.	.
ATP8A1	10396	hgsc.bcm.edu	36	4	42323779	42323779	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006095	exon2	c.A154G	p.N52D	.	.	.
D4S234E	27065	hgsc.bcm.edu	36	4	4440343	4440343	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001040101	exon2	c.C86T	p.T29M	.	.	.
ATP10D	57205	hgsc.bcm.edu	36	4	47243493	47243493	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020453	exon10	c.G1492A	p.A498T	.	.	.
TXK	7294	hgsc.bcm.edu	36	4	47809205	47809205	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003328	exon4	c.C256T	p.Q86X	.	.	.
STK32B	55351	hgsc.bcm.edu	36	4	5221026	5221026	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018401	exon3	c.C208A	p.R70R	.	.	.
SPATA18	132671	hgsc.bcm.edu	36	4	52632873	52632873	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145263	exon6	c.C552T	p.R184R	.	.	.
EPHA5	2044	hgsc.bcm.edu	36	4	66217947	66217947	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004439	exon1	c.C109T	p.R37W	.	.	.
TMPRSS11A	339967	hgsc.bcm.edu	36	4	68471096	68471096	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182606	exon7	c.C673A	p.L225I	.	.	.
RUFY3	22902	hgsc.bcm.edu	36	4	71891218	71891218	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001037442	exon18	c.A1841G	p.Q614R	.	.	.
ANXA3	306	hgsc.bcm.edu	36	4	79731776	79731776	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005139	exon7	c.G458A	p.R153Q	.	.	.
PKD2	5311	hgsc.bcm.edu	36	4	89208215	89208215	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000297	exon13	c.G2500A	p.V834I	.	.	.
GRID2	2895	hgsc.bcm.edu	36	4	94655431	94655431	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001510	exon13	c.G2039T	p.G680V	.	.	.
FIP1L1	81608	hgsc.bcm.edu	36	4	54014005	54014006	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	AG	AG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030917	exon16	c.1447_1448del	p.483_483del	.	.	.
ARMCX1	51309	hgsc.bcm.edu	36	X	100694752	100694752	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016608	exon4	c.C183T	p.N61N	.	.	.
CLCN4	1183	hgsc.bcm.edu	36	X	10113202	10113202	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001830	exon3	c.G130A	p.D44N	.	.	.
RBM41	55285	hgsc.bcm.edu	36	X	106245903	106245903	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001171080	exon3	c.A163T	p.M55L	.	.	.
COL4A5	1287	hgsc.bcm.edu	36	X	107720950	107720950	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000495	exon20	c.C1172A	p.A391E	.	.	.
NXT2	55916	hgsc.bcm.edu	36	X	108666832	108666832	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018698	exon2	c.C106T	p.R36W	.	.	.
CAPN6	827	hgsc.bcm.edu	36	X	110393799	110393799	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014289	exon2	c.T22C	p.F8L	.	.	.
HCCS	3052	hgsc.bcm.edu	36	X	11042919	11042919	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005333	exon3	c.G144T	p.K48N	.	.	.
UPF3B	65109	hgsc.bcm.edu	36	X	118870854	118870854	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080632	exon1	c.C66T	p.A22A	.	.	.
SH2D1A	4068	hgsc.bcm.edu	36	X	123308192	123308192	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001114937	exon1	c.T19C	p.Y7H	.	.	.
ODZ1	10178	hgsc.bcm.edu	36	X	123345296	123345296	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014253	exon29	c.C7145A	p.A2382D	.	.	.
OCRL	4952	hgsc.bcm.edu	36	X	128519066	128519066	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001587	exon5	c.C322A	p.L108I	.	.	.
RP13-102H20.1	158763	hgsc.bcm.edu	36	X	130043499	130043499	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144967	exon2	c.G179A	p.R60H	.	.	.
IGSF1	3547	hgsc.bcm.edu	36	X	130244761	130244761	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001170962	exon5	c.A799C	p.K267Q	.	.	.
SLC9A6	10479	hgsc.bcm.edu	36	X	134920368	134920368	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001177651	exon8	c.C845G	p.S282C	.	.	.
MAGEC2	51438	hgsc.bcm.edu	36	X	141118410	141118410	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016249	exon3	c.G1030A	p.V344I	.	.	.
AFF2	2334	hgsc.bcm.edu	36	X	147851979	147851979	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002025	exon13	c.A2729G	p.E910G	.	.	.
AFF2	2334	hgsc.bcm.edu	36	X	147862776	147862776	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002025	exon16	c.G3354A	p.L1118L	.	.	.
PNMA5	114824	hgsc.bcm.edu	36	X	151909617	151909617	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001103150	exon2	c.G1182A	p.R394R	.	.	.
PIGA	5277	hgsc.bcm.edu	36	X	15249626	15249626	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020473	exon5	c.C676T	p.P226S	.	.	.
BMX	660	hgsc.bcm.edu	36	X	15478024	15478024	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_203281	exon18	c.T1936C	p.Y646H	.	.	.
BEND2	139105	hgsc.bcm.edu	36	X	18140679	18140679	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153346	exon4	c.T419C	p.V140A	.	.	.
CDKL5	6792	hgsc.bcm.edu	36	X	18532296	18532296	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003159	exon12	c.G1331A	p.R444H	.	.	.
PHKA2	5256	hgsc.bcm.edu	36	X	18846721	18846721	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000292	exon19	c.A2136G	p.P712P	.	.	.
ZFX	7543	hgsc.bcm.edu	36	X	24138806	24138806	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001178086	exon6	c.C1123T	p.P375S	.	.	.
ARSF	416	hgsc.bcm.edu	36	X	3017574	3017574	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004042	exon7	c.C868A	p.L290I	.	.	.
ARSF	416	hgsc.bcm.edu	36	X	3038211	3038211	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004042	exon10	c.C1308T	p.N436N	.	.	.
DMD	1756	hgsc.bcm.edu	36	X	31137683	31137683	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004015	exon4	c.A212G	p.K71R	.	.	.
DMD	1756	hgsc.bcm.edu	36	X	31435341	31435341	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004021	exon13	c.C988T	p.R330W	.	.	.
MED14	9282	hgsc.bcm.edu	36	X	40399168	40399168	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004229	exon29	c.C4061T	p.T1354M	.	.	.
CASK	8573	hgsc.bcm.edu	36	X	41322631	41322631	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001126054	exon15	c.G1409A	p.G470D	.	.	.
USP11	8237	hgsc.bcm.edu	36	X	46983807	46983807	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004651	exon3	c.C529T	p.P177S	.	.	.
SUV39H1	6839	hgsc.bcm.edu	36	X	48449680	48449680	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003173	exon4	c.C909T	p.Y303Y	.	.	.
CCDC22	28952	hgsc.bcm.edu	36	X	48990289	48990289	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014008	exon7	c.G868A	p.G290S	.	.	.
CCDC22	28952	hgsc.bcm.edu	36	X	48992318	48992318	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014008	exon13	c.G1528A	p.E510K	.	.	.
PPP1R3F	89801	hgsc.bcm.edu	36	X	49029591	49029591	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033215	exon4	c.C1495A	p.L499I	.	.	.
CCNB3	85417	hgsc.bcm.edu	36	X	50068425	50068425	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033031	exon5	c.C516A	p.I172I	.	.	.
BMP15	9210	hgsc.bcm.edu	36	X	50675581	50675581	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005448	exon2	c.G413A	p.R138H	.	.	.
BMP15	9210	hgsc.bcm.edu	36	X	50675955	50675955	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005448	exon2	c.C787A	p.L263I	.	.	.
MAGED1	9500	hgsc.bcm.edu	36	X	51656826	51656826	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006986	exon4	c.G1335A	p.S445S	.	.	.
KDM5C	8242	hgsc.bcm.edu	36	X	53240521	53240521	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004187	exon23	c.G3563C	p.C1188S	.	.	.
KLF8	11279	hgsc.bcm.edu	36	X	56313353	56313353	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007250	exon5	c.G772A	p.A258T	.	.	.
FAAH2	158584	hgsc.bcm.edu	36	X	57532052	57532052	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_174912	exon11	c.A1561G	p.K521E	.	.	.
FAM123B	139285	hgsc.bcm.edu	36	X	63328943	63328943	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152424	exon2	c.A949G	p.T317A	.	.	.
OPHN1	4983	hgsc.bcm.edu	36	X	67190248	67190248	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002547	exon22	c.T2288C	p.I763T	.	.	.
GDPD2	54857	hgsc.bcm.edu	36	X	69569009	69569009	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001171193	exon12	c.C1198T	p.R400C	.	.	.
TEX11	56159	hgsc.bcm.edu	36	X	69689893	69689893	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001003811	exon28	c.T2432C	p.I811T	.	.	.
NLGN3	54413	hgsc.bcm.edu	36	X	70284517	70284517	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166660	exon2	c.C193T	p.P65S	.	.	.
ZMYM3	9203	hgsc.bcm.edu	36	X	70377840	70377840	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001171162	exon24	c.C3846T	p.R1282R	.	.	.
ZMYM3	9203	hgsc.bcm.edu	36	X	70378995	70378995	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001171162	exon23	c.G3516A	p.T1172T	.	.	.
SLC16A2	6567	hgsc.bcm.edu	36	X	73667953	73667953	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006517	exon6	c.C1682T	p.P561L	.	.	.
HDX	139324	hgsc.bcm.edu	36	X	83486105	83486105	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001177479	exon7	c.G1469A	p.R490Q	.	.	.
CREG2	200407	hgsc.bcm.edu	36	2	101366487	101366487	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_153836	exon2	c.A551G	p.D184G	.	.	.
IL18R1	8809	hgsc.bcm.edu	36	2	102358899	102358899	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003855	exon4	c.A569T	p.H190L	.	.	.
MFSD9	84804	hgsc.bcm.edu	36	2	102701827	102701827	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032718	exon6	c.C909T	p.Y303Y	.	.	.
C2orf50	130813	hgsc.bcm.edu	36	2	11198103	11198103	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182500	exon2	c.T274C	p.F92L	.	.	.
ERCC3	2071	hgsc.bcm.edu	36	2	127746994	127746994	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000122	exon11	c.G1744A	p.G582R	.	.	.
AMMECR1L	83607	hgsc.bcm.edu	36	2	128348108	128348108	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199140	exon3	c.C171T	p.S57S	.	.	.
UGCGL1	56886	hgsc.bcm.edu	36	2	128657829	128657829	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020120	exon38	c.A4355G	p.D1452G	.	.	.
MCM6	4175	hgsc.bcm.edu	36	2	136346871	136346871	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005915	exon2	c.C120T	p.S40S	.	.	.
CXCR4	7852	hgsc.bcm.edu	36	2	136589590	136589590	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003467	exon2	c.C378T	p.I126I	.	.	.
LRP1B	53353	hgsc.bcm.edu	36	2	141176515	141176515	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018557	exon38	c.T6101C	p.L2034P	.	.	.
GRB14	2888	hgsc.bcm.edu	36	2	165112431	165112431	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004490	exon3	c.C466T	p.P156S	.	.	.
LRP2	4036	hgsc.bcm.edu	36	2	169711543	169711543	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004525	exon69	c.G12763C	p.E4255Q	.	.	.
LRP2	4036	hgsc.bcm.edu	36	2	169804343	169804343	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004525	exon26	c.C4234T	p.R1412W	.	.	.
TTN	7273	hgsc.bcm.edu	36	2	179320810	179320810	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133379	exon46	c.T14562C	p.S4854S	.	.	.
TTN	7273	hgsc.bcm.edu	36	2	179341119	179341119	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133379	exon39	c.A9172C	p.I3058L	.	.	.
SSFA2	6744	hgsc.bcm.edu	36	2	182486849	182486849	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006751	exon10	c.G1519A	p.D507N	.	.	.
FAM171B	165215	hgsc.bcm.edu	36	2	187320100	187320100	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_177454	exon4	c.C602T	p.A201V	.	.	.
MYO1B	4430	hgsc.bcm.edu	36	2	191937179	191937179	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012223	exon11	c.C964T	p.R322X	.	.	.
HECW2	57520	hgsc.bcm.edu	36	2	196892399	196892399	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020760	exon9	c.G1460T	p.G487V	.	.	.
CASP10	843	hgsc.bcm.edu	36	2	201782153	201782153	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032974	exon9	c.C1038T	p.A346A	.	.	.
BMPR2	659	hgsc.bcm.edu	36	2	203103893	203103893	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001204	exon8	c.G1099C	p.G367R	.	.	.
MDH1B	130752	hgsc.bcm.edu	36	2	207328311	207328311	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001039845	exon5	c.C577T	p.R193C	.	.	.
PIKFYVE	200576	hgsc.bcm.edu	36	2	208924373	208924373	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015040	exon38	c.C5664T	p.L1888L	.	.	.
C2orf21	285175	hgsc.bcm.edu	36	2	210359080	210359080	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_182587	exon5	c.C646G	p.Q216E	.	.	.
APOB	338	hgsc.bcm.edu	36	2	21096117	21096117	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000384	exon19	c.G2982A	p.P994P	.	.	.
CPS1	1373	hgsc.bcm.edu	36	2	211185165	211185165	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001122634	exon10	c.C1118T	p.T373I	.	.	.
ABCA12	26154	hgsc.bcm.edu	36	2	215523915	215523915	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173076	exon45	c.C6785T	p.T2262I	.	.	.
ATIC	471	hgsc.bcm.edu	36	2	215906375	215906375	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004044	exon9	c.A872T	p.D291V	.	.	.
CYP27A1	1593	hgsc.bcm.edu	36	2	219387991	219387991	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000784	exon9	c.G1590T	p.Q530H	.	.	.
ABCB6	10058	hgsc.bcm.edu	36	2	219783231	219783231	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005689	exon18	c.C2385T	p.L795L	.	.	.
GMPPA	29926	hgsc.bcm.edu	36	2	220074996	220074996	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_205847	exon5	c.G422A	p.G141D	.	.	.
ACSL3	2181	hgsc.bcm.edu	36	2	223500129	223500129	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004457	exon12	c.T1443G	p.A481A	.	.	.
WDFY1	57590	hgsc.bcm.edu	36	2	224474273	224474273	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020830	exon5	c.C356T	p.A119V	.	.	.
COL6A3	1293	hgsc.bcm.edu	36	2	237940502	237940502	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_057166	exon8	c.C3246T	p.D1082D	.	.	.
COL6A3	1293	hgsc.bcm.edu	36	2	237961183	237961183	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_057167	exon3	c.G475A	p.G159R	.	.	.
MLPH	79083	hgsc.bcm.edu	36	2	238066815	238066815	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001042467	exon2	c.A7G	p.K3E	.	.	.
STK25	10494	hgsc.bcm.edu	36	2	242089608	242089608	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006374	exon3	c.C219T	p.C73C	.	.	.
ITSN2	50618	hgsc.bcm.edu	36	2	24391562	24391562	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_019595	exon3	c.C67T	p.R23C	.	.	.
NCOA1	8648	hgsc.bcm.edu	36	2	24844701	24844701	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003743	exon21	c.G4263A	p.T1421T	.	.	.
OTOF	9381	hgsc.bcm.edu	36	2	26559861	26559861	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_194248	exon13	c.C1365T	p.Y455Y	.	.	.
C2orf18	54978	hgsc.bcm.edu	36	2	26854632	26854632	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017877	exon6	c.G865A	p.A289T	.	.	.
CRIM1	51232	hgsc.bcm.edu	36	2	36618124	36618124	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016441	exon14	c.G2554A	p.V852I	.	.	.
PRKD3	23683	hgsc.bcm.edu	36	2	37366886	37366886	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005813	exon5	c.C848T	p.T283M	.	.	.
SOS1	6654	hgsc.bcm.edu	36	2	39137510	39137510	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005633	exon4	c.A347G	p.E116G	.	.	.
SLC3A1	6519	hgsc.bcm.edu	36	2	44361469	44361469	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000341	exon2	c.C541T	p.R181W	.	.	.
STON1-GTF2A1L	286749	hgsc.bcm.edu	36	2	48663094	48663094	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001198594	exon1	c.A1818G	p.L606L	.	.	.
ASB3	51130	hgsc.bcm.edu	36	2	53751171	53751171	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016115	exon10	c.A1530C	p.P510P	.	.	.
CCDC88A	55704	hgsc.bcm.edu	36	2	55397945	55397945	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001135597	exon21	c.A3644G	p.E1215G	.	.	.
CCDC104	112942	hgsc.bcm.edu	36	2	55624652	55624652	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_080667	exon8	c.C715A	p.L239I	.	.	.
CNRIP1	25927	hgsc.bcm.edu	36	2	68400000	68400000	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015463	exon1	c.G37A	p.A13T	.	.	.
ANKRD53	79998	hgsc.bcm.edu	36	2	71064791	71064791	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024933	exon6	c.G934A	p.A312T	.	.	.
SLC4A5	57835	hgsc.bcm.edu	36	2	74327746	74327746	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021196	exon14	c.T1984C	p.Y662H	.	.	.
ITPRIPL1	150771	hgsc.bcm.edu	36	2	96357041	96357041	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001163523	exon2	c.G921A	p.V307V	.	.	.
ZAP70	7535	hgsc.bcm.edu	36	2	97720974	97720974	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_207519	exon5	c.G787A	p.A263T	.	.	.
YSK4	80122	hgsc.bcm.edu	36	2	135460420	135460423	+	Frame_Shift_Del	DEL	GTGA	GTGA	-	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	GTGA	GTGA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_025052	exon7	c.2489_2492del	p.830_831del	.	.	.
ERP44	23071	hgsc.bcm.edu	36	9	101854599	101854599	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015051	exon4	c.G207T	p.E69D	.	.	.
C9orf125	84302	hgsc.bcm.edu	36	9	103278103	103278103	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032342	exon2	c.G1093A	p.A365T	.	.	.
ZNF462	58499	hgsc.bcm.edu	36	9	108786459	108786459	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_021224	exon10	c.A7004G	p.Y2335C	.	.	.
SUSD1	64420	hgsc.bcm.edu	36	9	113944453	113944453	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022486	exon5	c.G674A	p.G225D	.	.	.
KIAA1958	158405	hgsc.bcm.edu	36	9	114377219	114377219	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_133465	exon2	c.G1038A	p.L346L	.	.	.
RGS3	5998	hgsc.bcm.edu	36	9	115398997	115398997	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_144488	exon26	c.C3540A	p.L1180L	.	.	.
TRIM32	22954	hgsc.bcm.edu	36	9	118500497	118500497	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001099679	exon2	c.C655T	p.Q219X	.	.	.
ASTN2	23245	hgsc.bcm.edu	36	9	118665816	118665816	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014010	exon10	c.C1754T	p.S585F	.	.	.
DBC1	1620	hgsc.bcm.edu	36	9	120969453	120969453	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014618	exon8	c.A2016T	p.A672A	.	.	.
PHF19	26147	hgsc.bcm.edu	36	9	122671382	122671382	+	Silent	SNP	G	G	A	rs41273396	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015651	exon6	c.C513T	p.A171A	.	.	.
ZBTB26	57684	hgsc.bcm.edu	36	9	124721825	124721825	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020924	exon2	c.G210A	p.V70V	.	.	.
GAPVD1	26130	hgsc.bcm.edu	36	9	127104357	127104357	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015635	exon3	c.C460T	p.R154X	.	.	.
FAM125B	89853	hgsc.bcm.edu	36	9	128223985	128223985	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_033446	exon7	c.C694T	p.R232X	.	.	.
RALGPS1	9649	hgsc.bcm.edu	36	9	128767951	128767951	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014636	exon3	c.G65A	p.S22N	.	.	.
COQ4	51117	hgsc.bcm.edu	36	9	130127250	130127250	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016035	exon3	c.C210T	p.V70V	.	.	.
SLC27A4	10999	hgsc.bcm.edu	36	9	130157852	130157852	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005094	exon12	c.C1730T	p.A577V	.	.	.
C9orf50	375759	hgsc.bcm.edu	36	9	131415583	131415583	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_199350	exon5	c.C995G	p.A332G	.	.	.
ABL1	25	hgsc.bcm.edu	36	9	132749345	132749345	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005157	exon11	c.A1847G	p.K616R	.	.	.
LAMC3	10319	hgsc.bcm.edu	36	9	132926266	132926266	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006059	exon13	c.A2182G	p.T728A	.	.	.
SURF2	6835	hgsc.bcm.edu	36	9	135217815	135217815	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017503	exon6	c.C750T	p.S250S	.	.	.
SARDH	1757	hgsc.bcm.edu	36	9	135551271	135551271	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007101	exon14	c.G1702A	p.A568T	.	.	.
CAMSAP1	157922	hgsc.bcm.edu	36	9	137847598	137847598	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015447	exon15	c.C4346T	p.A1449V	.	.	.
CAMSAP1	157922	hgsc.bcm.edu	36	9	137847601	137847601	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015447	exon15	c.C4343T	p.T1448I	.	.	.
PHPT1	29085	hgsc.bcm.edu	36	9	138865076	138865076	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014172	exon3	c.A334T	p.K112X	.	.	.
DPP7	29952	hgsc.bcm.edu	36	9	139125219	139125219	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_013379	exon12	c.G1277A	p.R426Q	.	.	.
C9orf37	85026	hgsc.bcm.edu	36	9	139629997	139629997	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032937	exon3	c.C476T	p.A159V	.	.	.
C9orf93	203238	hgsc.bcm.edu	36	9	15734434	15734434	+	Nonsense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173550	exon17	c.T2213G	p.L738X	.	.	.
ADAMTSL1	92949	hgsc.bcm.edu	36	9	18651951	18651951	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052866	exon9	c.C965T	p.A322V	.	.	.
ELAVL2	1993	hgsc.bcm.edu	36	9	23691560	23691560	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001171197	exon5	c.T530G	p.I177S	.	.	.
VLDLR	7436	hgsc.bcm.edu	36	9	2638277	2638277	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001018056	exon13	c.G1892A	p.G631D	.	.	.
DCTN3	11258	hgsc.bcm.edu	36	9	34608742	34608742	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024348	exon2	c.G112A	p.V38I	.	.	.
TPM2	7169	hgsc.bcm.edu	36	9	35673182	35673182	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003289	exon9	c.G829A	p.A277T	.	.	.
CCIN	881	hgsc.bcm.edu	36	9	36159849	36159849	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005893	exon1	c.G350A	p.R117Q	.	.	.
GNA14	9630	hgsc.bcm.edu	36	9	79230447	79230447	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_004297	exon6	c.G728A	p.R243H	.	.	.
ZCCHC6	79670	hgsc.bcm.edu	36	9	88157542	88157542	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024617	exon2	c.C393A	p.D131E	.	.	.
NFIL3	4783	hgsc.bcm.edu	36	9	93212022	93212022	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005384	exon2	c.G816A	p.P272P	.	.	.
SPTLC1	10558	hgsc.bcm.edu	36	9	93836955	93836955	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006415	exon14	c.C1286T	p.A429V	.	.	.
PHF2	5253	hgsc.bcm.edu	36	9	95477824	95477824	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005392	exon20	c.C2764T	p.R922C	.	.	.
CREB3	10488	hgsc.bcm.edu	36	9	35723420	35723422	+	In_Frame_Del	DEL	GAG	GAG	-	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	GAG	GAG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006368	exon4	c.373_375del	p.125_125del	.	.	.
RAB20	55647	hgsc.bcm.edu	36	13	109974044	109974044	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017817	exon2	c.C674A	p.P225H	.	.	.
ATP11A	23250	hgsc.bcm.edu	36	13	112521681	112521681	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015205	exon7	c.C633T	p.H211H	.	.	.
ATP11A	23250	hgsc.bcm.edu	36	13	112584271	112584271	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032189	exon29	c.G3468T	p.K1156N	.	.	.
CUL4A	8451	hgsc.bcm.edu	36	13	112941824	112941824	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001008895	exon10	c.C993T	p.G331G	.	.	.
ZMYM5	9205	hgsc.bcm.edu	36	13	19311050	19311050	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001039650	exon5	c.C662T	p.A221V	.	.	.
SGCG	6445	hgsc.bcm.edu	36	13	22722815	22722815	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000231	exon4	c.C344T	p.A115V	.	.	.
SPATA13	221178	hgsc.bcm.edu	36	13	23766942	23766942	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166271	exon10	c.G3146A	p.R1049H	.	.	.
RNF17	56163	hgsc.bcm.edu	36	13	24239487	24239487	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001184993	exon2	c.A208G	p.I70V	.	.	.
CCNA1	8900	hgsc.bcm.edu	36	13	35905314	35905314	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001111047	exon2	c.G121T	p.G41W	.	.	.
COG6	57511	hgsc.bcm.edu	36	13	39191402	39191402	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001145079	exon14	c.A1314G	p.P438P	.	.	.
AKAP11	11215	hgsc.bcm.edu	36	13	41775610	41775610	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016248	exon8	c.A4728G	p.A1576A	.	.	.
ZC3H13	23091	hgsc.bcm.edu	36	13	45441190	45441190	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015070	exon14	c.C3490T	p.R1164X	.	.	.
FNDC3A	22862	hgsc.bcm.edu	36	13	48660769	48660769	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001079673	exon17	c.C1943T	p.A648V	.	.	.
FNDC3A	22862	hgsc.bcm.edu	36	13	48679445	48679445	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001079673	exon26	c.C3510T	p.D1170D	.	.	.
RCBTB1	55213	hgsc.bcm.edu	36	13	49032091	49032091	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018191	exon5	c.C408A	p.G136G	.	.	.
DIS3	22894	hgsc.bcm.edu	36	13	72247359	72247359	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001128226	exon6	c.A888G	p.T296T	.	.	.
DCT	1638	hgsc.bcm.edu	36	13	93915942	93915942	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001922	exon4	c.C809T	p.P270L	.	.	.
ABCC4	10257	hgsc.bcm.edu	36	13	94684993	94684993	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001105515	exon4	c.T403C	p.Y135H	.	.	.
IPO5	3843	hgsc.bcm.edu	36	13	97468893	97468893	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002271	exon26	c.G2824T	p.A942S	.	.	.
FARP1	10160	hgsc.bcm.edu	36	13	97836039	97836039	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005766	exon8	c.C729T	p.A243A	.	.	.
DNMBP	23268	hgsc.bcm.edu	36	10	101705367	101705367	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015221	exon4	c.G1854A	p.P618P	.	.	.
GBF1	8729	hgsc.bcm.edu	36	10	104130323	104130323	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001199378	exon38	c.C5051T	p.A1684V	.	.	.
PSD	5662	hgsc.bcm.edu	36	10	104153617	104153617	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002779	exon16	c.G2816A	p.R939Q	.	.	.
TAF5	6877	hgsc.bcm.edu	36	10	105129708	105129708	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006951	exon5	c.G1355A	p.R452H	.	.	.
CALHM1	255022	hgsc.bcm.edu	36	10	105208267	105208267	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001001412	exon1	c.C232T	p.L78L	.	.	.
CCDC147	159686	hgsc.bcm.edu	36	10	106197489	106197489	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001008723	exon16	c.G2300A	p.R767H	.	.	.
ACSL5	51703	hgsc.bcm.edu	36	10	114176040	114176040	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016234	exon19	c.A1940C	p.D647A	.	.	.
INPP5F	22876	hgsc.bcm.edu	36	10	121555933	121555933	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014937	exon12	c.G1391A	p.R464H	.	.	.
SEC23IP	11196	hgsc.bcm.edu	36	10	121668983	121668983	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007190	exon11	c.A1910G	p.Y637C	.	.	.
DHTKD1	55526	hgsc.bcm.edu	36	10	12182207	12182207	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018706	exon9	c.G1696A	p.G566R	.	.	.
NUDT5	11164	hgsc.bcm.edu	36	10	12252738	12252738	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014142	exon9	c.G534A	p.L178L	.	.	.
CPXM2	119587	hgsc.bcm.edu	36	10	125518087	125518087	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_198148	exon9	c.G1244A	p.R415Q	.	.	.
FANK1	92565	hgsc.bcm.edu	36	10	127687100	127687100	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145235	exon8	c.G840A	p.T280T	.	.	.
PTER	9317	hgsc.bcm.edu	36	10	16566459	16566459	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001001484	exon3	c.C70A	p.L24M	.	.	.
NEBL	10529	hgsc.bcm.edu	36	10	21218858	21218858	+	Missense_Mutation	SNP	C	C	G	rs41277374	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006393	exon3	c.G180C	p.K60N	.	.	.
GAD2	2572	hgsc.bcm.edu	36	10	26558601	26558601	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001134366	exon7	c.C729T	p.G243G	.	.	.
ARMC4	55130	hgsc.bcm.edu	36	10	28264039	28264039	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018076	exon16	c.C2401T	p.P801S	.	.	.
WAC	51322	hgsc.bcm.edu	36	10	28937166	28937166	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_100486	exon7	c.C656A	p.P219H	.	.	.
MTPAP	55149	hgsc.bcm.edu	36	10	30642597	30642597	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018109	exon9	c.A1696G	p.T566A	.	.	.
PFKP	5214	hgsc.bcm.edu	36	10	3141577	3141577	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002627	exon10	c.G994A	p.A332T	.	.	.
ZNF25	219749	hgsc.bcm.edu	36	10	38281535	38281535	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145011	exon6	c.A897G	p.S299S	.	.	.
RASSF4	83937	hgsc.bcm.edu	36	10	44787255	44787255	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032023	exon3	c.T91C	p.Y31H	.	.	.
FRMPD2	143162	hgsc.bcm.edu	36	10	49110308	49110308	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001018071	exon10	c.A1024G	p.R342G	.	.	.
CHAT	1103	hgsc.bcm.edu	36	10	50526576	50526576	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142929	exon9	c.C945T	p.D315D	.	.	.
PCDH15	65217	hgsc.bcm.edu	36	10	55252975	55252975	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001142767	exon31	c.A4397T	p.K1466I	.	.	.
SGPL1	8879	hgsc.bcm.edu	36	10	72306408	72306408	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003901	exon14	c.C1550T	p.A517V	.	.	.
ITIH5	80760	hgsc.bcm.edu	36	10	7648180	7648180	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030569	exon13	c.G2346A	p.G782G	.	.	.
POLR3A	11128	hgsc.bcm.edu	36	10	79439717	79439717	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007055	exon13	c.C1681T	p.R561X	.	.	.
ANXA11	311	hgsc.bcm.edu	36	10	81908904	81908904	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_145869	exon14	c.G1208T	p.G403V	.	.	.
MAT1A	4143	hgsc.bcm.edu	36	10	82026301	82026301	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000429	exon6	c.C579T	p.G193G	.	.	.
GRID1	2894	hgsc.bcm.edu	36	10	87474227	87474227	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_017551	exon11	c.C1720A	p.P574T	.	.	.
WAPAL	23063	hgsc.bcm.edu	36	10	88249867	88249867	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015045	exon3	c.T1113C	p.V371V	.	.	.
NOC3L	64318	hgsc.bcm.edu	36	10	96107934	96107934	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022451	exon3	c.A246G	p.E82E	.	.	.
HELLS	3070	hgsc.bcm.edu	36	10	96323857	96323857	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018063	exon8	c.G628A	p.V210I	.	.	.
ENTPD1	953	hgsc.bcm.edu	36	10	97616084	97616084	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001776	exon10	c.T1487C	p.L496S	.	.	.
MAN2A1	4124	hgsc.bcm.edu	36	5	109148430	109148430	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002372	exon10	c.C1664T	p.A555V	.	.	.
MAN2A1	4124	hgsc.bcm.edu	36	5	109187342	109187342	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002372	exon16	c.C2471T	p.P824L	.	.	.
FBN2	2201	hgsc.bcm.edu	36	5	127681823	127681823	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001999	exon36	c.G4634A	p.G1545D	.	.	.
RAPGEF6	51735	hgsc.bcm.edu	36	5	130797040	130797040	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001164387	exon27	c.A3995G	p.H1332R	.	.	.
ACSL6	23305	hgsc.bcm.edu	36	5	131330110	131330110	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001009185	exon17	c.A1611G	p.G537G	.	.	.
PPP2CA	5515	hgsc.bcm.edu	36	5	133565590	133565590	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002715	exon3	c.A334G	p.T112A	.	.	.
SLC23A1	9963	hgsc.bcm.edu	36	5	138745580	138745580	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005847	exon3	c.C208A	p.L70M	.	.	.
CLPTM1L	81037	hgsc.bcm.edu	36	5	1394787	1394787	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030782	exon3	c.A452C	p.Q151P	.	.	.
HARS2	23438	hgsc.bcm.edu	36	5	140055380	140055380	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_012208	exon5	c.G503A	p.R168H	.	.	.
PCDHA1	56147	hgsc.bcm.edu	36	5	140147614	140147614	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_031410	exon1	c.G1555A	p.A519T	.	.	.
PCDHB16	57717	hgsc.bcm.edu	36	5	140543113	140543113	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_020957	exon1	c.C795T	p.S265S	.	.	.
PCDHB11	56125	hgsc.bcm.edu	36	5	140560710	140560710	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_018931	exon1	c.A1179T	p.L393L	.	.	.
PCDHGA12	26025	hgsc.bcm.edu	36	5	140790961	140790961	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032094	exon1	c.C451T	p.R151W	.	.	.
PCDHGC3	5098	hgsc.bcm.edu	36	5	140836528	140836528	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032402	exon1	c.A661G	p.T221A	.	.	.
PCDHGC4	56098	hgsc.bcm.edu	36	5	140845713	140845713	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032406	exon1	c.G789A	p.Q263Q	.	.	.
SPRY4	81848	hgsc.bcm.edu	36	5	141674724	141674724	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_030964	exon3	c.C203T	p.T68I	.	.	.
ARHGAP26	23092	hgsc.bcm.edu	36	5	142272985	142272985	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015071	exon10	c.G971A	p.R324Q	.	.	.
TRIO	7204	hgsc.bcm.edu	36	5	14550066	14550066	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_007118	exon50	c.C7959T	p.G2653G	.	.	.
SH3TC2	79628	hgsc.bcm.edu	36	5	148407632	148407632	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024577	exon3	c.C265T	p.R89C	.	.	.
ABLIM3	22885	hgsc.bcm.edu	36	5	148576781	148576781	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014945	exon8	c.G736T	p.G246X	.	.	.
FAT2	2196	hgsc.bcm.edu	36	5	150894180	150894180	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001447	exon12	c.C9410A	p.A3137D	.	.	.
FAT2	2196	hgsc.bcm.edu	36	5	150902513	150902513	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001447	exon9	c.G8368A	p.V2790I	.	.	.
FAT2	2196	hgsc.bcm.edu	36	5	150928420	150928420	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001447	exon1	c.T266C	p.V89A	.	.	.
GEMIN5	25929	hgsc.bcm.edu	36	5	154258193	154258193	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_015465	exon23	c.G3345T	p.Q1115H	.	.	.
MRPL22	29093	hgsc.bcm.edu	36	5	154301015	154301015	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_014180	exon2	c.T74C	p.L25S	.	.	.
HAVCR2	84868	hgsc.bcm.edu	36	5	156468528	156468528	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_032782	exon1	c.G45A	p.L15L	.	.	.
TTC1	7265	hgsc.bcm.edu	36	5	159424630	159424630	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003314	exon8	c.A859G	p.N287D	.	.	.
RMND5B	64777	hgsc.bcm.edu	36	5	177507160	177507160	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_022762	exon9	c.C881T	p.A294V	.	.	.
SCGB3A1	92304	hgsc.bcm.edu	36	5	179950282	179950282	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_052863	exon2	c.T215C	p.I72T	.	.	.
BTNL9	153579	hgsc.bcm.edu	36	5	180405140	180405140	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_152547	exon2	c.G45A	p.S15S	.	.	.
IRX1	79192	hgsc.bcm.edu	36	5	3652344	3652344	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_024337	exon2	c.G282A	p.S94S	.	.	.
SLC1A3	6507	hgsc.bcm.edu	36	5	36715656	36715656	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001166695	exon6	c.A1031C	p.N344T	.	.	.
C6	729	hgsc.bcm.edu	36	5	41189854	41189854	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000065	exon15	c.C2105T	p.T702M	.	.	.
ITGA1	3672	hgsc.bcm.edu	36	5	52247060	52247060	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_181501	exon15	c.T1867A	p.S623T	.	.	.
CDC20B	166979	hgsc.bcm.edu	36	5	54504584	54504584	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001170402	exon1	c.T2C	p.M1T	.	.	.
C5orf35	133383	hgsc.bcm.edu	36	5	56241239	56241239	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001171990	exon1	c.C10T	p.R4C	.	.	.
PLK2	10769	hgsc.bcm.edu	36	5	57786925	57786925	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_006622	exon12	c.A1699G	p.S567G	.	.	.
SDCCAG10	10283	hgsc.bcm.edu	36	5	64135915	64135915	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_005869	exon10	c.C884T	p.A295V	.	.	.
POLS	11044	hgsc.bcm.edu	36	5	6799519	6799519	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001171805	exon7	c.A688G	p.I230V	.	.	.
HEXB	3074	hgsc.bcm.edu	36	5	74045098	74045098	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_000521	exon7	c.T783G	p.S261S	.	.	.
MTRR	4552	hgsc.bcm.edu	36	5	7953161	7953161	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002454	exon15	c.T2087C	p.I696T	.	.	.
SEMA5A	9037	hgsc.bcm.edu	36	5	9107255	9107255	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003966	exon19	c.A2633G	p.D878G	.	.	.
SEMA5A	9037	hgsc.bcm.edu	36	5	9207717	9207717	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003966	exon12	c.G1364A	p.R455Q	.	.	.
SEMA5A	9037	hgsc.bcm.edu	36	5	9279982	9279982	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_003966	exon7	c.C431T	p.S144L	.	.	.
CAST	831	hgsc.bcm.edu	36	5	96107816	96107816	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_173060	exon14	c.A900G	p.E300E	.	.	.
C1orf58	148362	hgsc.bcm.edu	36	1	220968707	220968707	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	.	.	.	.	.	.	.
THOC6	79228	hgsc.bcm.edu	36	16	3017076	3017076	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	.	.	.	.	.	.	.
C12orf63	374467	hgsc.bcm.edu	36	12	95660386	95660386	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AA-3516-01A-02W-0833-10	TCGA-AA-3516-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	.	.	.	.	.	.	.