Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
GLCCI1	113263	hgsc.bcm.edu	36	7	8091147	8091147	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_138426	exon7	c.C1273T	p.R425X	.	.	.
TRRAP	8295	hgsc.bcm.edu	36	7	98388930	98388930	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003496	exon38	c.G5593A	p.G1865R	.	.	.
ZNF394	84124	hgsc.bcm.edu	36	7	98934341	98934341	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032164	exon2	c.G517A	p.D173N	.	.	.
CST9	128822	hgsc.bcm.edu	36	20	23532292	23532292	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001008693	exon2	c.A335G	p.N112S	.	.	.
GNAS	2778	hgsc.bcm.edu	36	20	56918010	56918010	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_080426	exon8	c.G657T	p.K219N	.	.	.
NRXN3	9369	hgsc.bcm.edu	36	14	79397965	79397965	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_138970	exon6	c.G1204A	p.A402T	.	.	.
RAD23A	5886	hgsc.bcm.edu	36	19	12919819	12919819	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005053	exon2	c.C230T	p.T77I	.	.	.
M6PRBP1	10226	hgsc.bcm.edu	36	19	4795732	4795732	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001164194	exon7	c.G872A	p.S291N	.	.	.
ZNF577	84765	hgsc.bcm.edu	36	19	57068216	57068216	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_032679	exon7	c.C839A	p.S280Y	.	.	.
VN1R2	317701	hgsc.bcm.edu	36	19	58453945	58453945	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_173856	exon1	c.C505A	p.H169N	.	.	.
NEFM	4741	hgsc.bcm.edu	36	8	24831756	24831756	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001105541	exon3	c.G1355T	p.G452V	.	.	.
PHTF1	10745	hgsc.bcm.edu	36	1	114048835	114048835	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_006608	exon13	c.G1779A	p.W593X	.	.	.
NRAS	4893	hgsc.bcm.edu	36	1	115058052	115058052	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002524	exon3	c.A182T	p.Q61L	NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,-1	.	.
PRDM2	7799	hgsc.bcm.edu	36	1	13980924	13980924	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001007257	exon3	c.C3444G	p.H1148Q	.	.	.
LY9	4063	hgsc.bcm.edu	36	1	159051157	159051157	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002348	exon4	c.G1054A	p.V352I	.	.	.
NAV1	89796	hgsc.bcm.edu	36	1	200019334	200019334	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001167738	exon5	c.G1362A	p.P454P	.	.	.
ELF3	1999	hgsc.bcm.edu	36	1	200251018	200251018	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001114309	exon9	c.T1060C	p.F354L	.	.	.
CNTN2	6900	hgsc.bcm.edu	36	1	203294386	203294386	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005076	exon5	c.G459T	p.L153F	.	.	.
KCNK2	3776	hgsc.bcm.edu	36	1	213475028	213475028	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001017424	exon7	c.C1186A	p.L396M	.	.	.
MACF1	23499	hgsc.bcm.edu	36	1	39573783	39573783	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033044	exon1	c.A4256G	p.E1419G	.	.	.
NFYC	4802	hgsc.bcm.edu	36	1	40996412	40996412	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014223	exon6	c.G420T	p.E140D	.	.	.
ORC1L	4998	hgsc.bcm.edu	36	1	52634329	52634329	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001190818	exon5	c.C698A	p.A233D	.	.	.
MSH4	4438	hgsc.bcm.edu	36	1	76049008	76049008	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002440	exon4	c.A627G	p.I209M	.	.	.
DSCAML1	57453	hgsc.bcm.edu	36	11	116881415	116881415	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_020693	exon9	c.G2206A	p.A736T	.	.	.
SERGEF	26297	hgsc.bcm.edu	36	11	17766464	17766464	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_012139	exon11	c.C1121A	p.A374D	.	.	.
C11orf24	53838	hgsc.bcm.edu	36	11	67786800	67786800	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_022338	exon4	c.C239A	p.T80K	.	.	.
WNT11	7481	hgsc.bcm.edu	36	11	75580417	75580417	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_004626	exon4	c.G729A	p.S243S	.	.	.
TFAP2B	7021	hgsc.bcm.edu	36	6	50913762	50913762	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003221	exon5	c.G937A	p.E313K	.	.	.
MSH5	4439	hgsc.bcm.edu	36	6	31834597	31834597	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_025259	exon15	c.G1343A	p.R448H	.	.	.
EZH1	2145	hgsc.bcm.edu	36	17	38113576	38113576	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001991	exon15	c.G1586A	p.R529H	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7518988	7518988	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001126114	exon6	c.C586T	p.R196X	TP53,central_nervous_system,brain,Substitution - Missense,-2	.	.
WDR16	146845	hgsc.bcm.edu	36	17	9452252	9452252	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_145054	exon7	c.A845T	p.K282I	.	.	.
MX1	4599	hgsc.bcm.edu	36	21	41734801	41734801	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001144925	exon11	c.C709T	p.P237S	.	.	.
FTO	79068	hgsc.bcm.edu	36	16	52435612	52435612	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_001080432	exon4	c.G796A	p.D266N	.	.	.
SPG7	6687	hgsc.bcm.edu	36	16	88124599	88124599	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_003119	exon7	c.T869G	p.L290R	.	.	.
SMAD4	4089	hgsc.bcm.edu	36	18	46845899	46845899	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_005359	exon9	c.A1064G	p.D355G	SMAD4,large_intestine,colon,Substitution - Missense,0	.	.
PCOLCE2	26577	hgsc.bcm.edu	36	3	144022528	144022528	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_013363	exon8	c.C999T	p.H333H	.	.	.
TCTEX1D2	255758	hgsc.bcm.edu	36	3	197527414	197527414	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152773	exon2	c.C199T	p.P67S	.	.	.
CTNNB1	1499	hgsc.bcm.edu	36	3	41241105	41241105	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001098210	exon3	c.C98G	p.S33C	CTNNB1,biliary_tract,gallbladder,Substitution - Missense,+1	.	.
ATRIP	84126	hgsc.bcm.edu	36	3	48475770	48475770	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_130384	exon6	c.C838G	p.P280A	.	.	.
PHF7	51533	hgsc.bcm.edu	36	3	52428915	52428915	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_016483	exon5	c.G213T	p.R71S	.	.	.
ADAMTS9	56999	hgsc.bcm.edu	36	3	64502308	64502308	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_182920	exon34	c.A5226T	p.V1742V	.	.	.
ERC1	23085	hgsc.bcm.edu	36	12	1007606	1007606	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_178039	exon2	c.C276T	p.G92G	.	.	.
NEDD1	121441	hgsc.bcm.edu	36	12	95862579	95862579	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_152905	exon13	c.G1529C	p.S510T	.	.	.
TGM7	116179	hgsc.bcm.edu	36	15	41361374	41361374	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_052955	exon9	c.C1311T	p.D437D	.	.	.
SPG11	80208	hgsc.bcm.edu	36	15	42645361	42645361	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_025137	exon38	c.C6982A	p.L2328I	.	.	.
SECISBP2L	9728	hgsc.bcm.edu	36	15	47092263	47092263	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_014701	exon11	c.A1470C	p.R490S	.	.	.
TTC23	64927	hgsc.bcm.edu	36	15	97557739	97557739	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001040659	exon6	c.A667G	p.T223A	.	.	.
TNIP2	79155	hgsc.bcm.edu	36	4	2716401	2716401	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024309	exon4	c.G727A	p.A243T	.	.	.
STAG2	10735	hgsc.bcm.edu	36	X	123004124	123004124	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001042750	exon7	c.G410T	p.R137I	.	.	.
ZNF75D	7626	hgsc.bcm.edu	36	X	134249301	134249301	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_007131	exon6	c.A967G	p.T323A	.	.	.
GPR112	139378	hgsc.bcm.edu	36	X	135256926	135256926	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_153834	exon6	c.C3395A	p.S1132X	.	.	.
GEMIN8	54960	hgsc.bcm.edu	36	X	13937183	13937183	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001042480	exon4	c.C499T	p.R167C	.	.	.
SLITRK2	84631	hgsc.bcm.edu	36	X	144713722	144713722	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001144006	exon3	c.G2087T	p.C696F	.	.	.
MAGEB1	4112	hgsc.bcm.edu	36	X	30179256	30179256	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	NM_002363	exon4	c.G725A	p.R242H	.	.	.
SLC38A5	92745	hgsc.bcm.edu	36	X	48211206	48211206	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_033518	exon3	c.T50C	p.V17A	.	.	.
OPHN1	4983	hgsc.bcm.edu	36	X	67209845	67209845	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002547	exon20	c.G1708T	p.E570X	.	.	.
TEX11	56159	hgsc.bcm.edu	36	X	69807035	69807035	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001003811	exon17	c.T1342C	p.S448P	.	.	.
P2RY10	27334	hgsc.bcm.edu	36	X	78103258	78103258	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_198333	exon2	c.G585T	p.L195F	.	.	.
SESTD1	91404	hgsc.bcm.edu	36	2	179694823	179694823	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_178123	exon13	c.G1361A	p.G454E	.	.	.
GFPT1	2673	hgsc.bcm.edu	36	2	69439954	69439954	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_002056	exon5	c.G358A	p.V120I	.	.	.
AKNA	80709	hgsc.bcm.edu	36	9	116163996	116163996	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_030767	exon9	c.A1933C	p.I645L	.	.	.
SECISBP2	79048	hgsc.bcm.edu	36	9	91162223	91162223	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_024077	exon15	c.C2191T	p.R731C	.	.	.
DIS3	22894	hgsc.bcm.edu	36	13	72244857	72244857	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001128226	exon9	c.A1271G	p.K424R	.	.	.
CUBN	8029	hgsc.bcm.edu	36	10	16907066	16907066	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001081	exon67	c.G10786A	p.V3596M	.	.	.
CTNNA3	29119	hgsc.bcm.edu	36	10	68969395	68969395	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_013266	exon4	c.G331A	p.D111N	.	.	.
PCDHB2	56133	hgsc.bcm.edu	36	5	140455437	140455437	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018936	exon1	c.G879A	p.T293T	.	.	.
PCDHB13	56123	hgsc.bcm.edu	36	5	140575113	140575113	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_018933	exon1	c.G1234C	p.E412Q	.	.	.
C5orf36	285600	hgsc.bcm.edu	36	5	93881947	93881947	+	Nonsense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2678-01A-01W-0831-10	TCGA-A6-2678-10A-01W-0831-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454			SOLID	NM_001145678	exon5	c.T732G	p.Y244X	.	.	.