Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL NTotCov_SOL NVarCov_SOL dbSNPPopFreq COSMIC_Gene_Freq FBRSL1 57666 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 133102390 133102396 + Frame_Shift_Del DEL CCCGGGA CCCGGGA - novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 CCCGGGA CCCGGGA . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_001142641 exon3 c.559_565del p.187_189del CCAGCTCCCGGGA . 92 10 105 0 . . PRKAA2 5563 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 57140104 57140107 + Frame_Shift_Del DEL AGAC AGAC - novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 AGAC AGAC . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_006252 exon2 c.144_147del p.48_49del TTAAATAGACAGA . 273 40 173 0 . . HCN1 348980 hgsc.bcm.edu 37 5 45267285 45267286 + Frame_Shift_Ins INS - - G novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 - - . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_021072 exon7 c.1689_1690insC p.S563fs GGAAAGTGAGTAA . 181 119 97 0 . . SMARCD1 6602 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 50482343 50482359 + Frame_Shift_Del DEL AAGTTCTCTTCCTTTTT AAGTTCTCTTCCTTTTT - novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 AAGTTCTCTTCCTTTTT AAGTTCTCTTCCTTTTT . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_003076 exon6 c.693_709del p.231_237del AAGAGGAAGTTCT . 36 14 49 0 . . TRAPPC11 60684 hgsc.bcm.edu;bcgsc.ca 37 4 184588276 184588276 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_021942 exon4 c.G438T p.L146F CCCTTTGCCCCCA . 67 4 87 0 . . C20orf194 25943 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 20 3240180 3240180 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_001009984 exon33 c.C3001A p.P1001T GACTTGGCTTGAT . 27 4 26 0 . . SMIM3 85027 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 150175154 150175154 + Missense_Mutation SNP G G A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_032947 exon2 c.G152A p.R51Q GCATGCGGACTCA . 20 9 25 0 . . KRT81 3887 hgsc.bcm.edu 37 12 52685191 52685191 + Missense_Mutation SNP G G A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_002281 exon1 c.C59T p.P20L GGCCGCGGCCCGC . 84 4 40 0 . . HSPA4L 22824 hgsc.bcm.edu 37 4 128743939 128743939 + Nonsense_Mutation SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc HSPA4L,colon,carcinoma,0,1 HSPA4L NM_014278 exon15 c.C1828T p.Q610X ATCATGCAAGATA . 41 2 76 0 . 0 CDC42BPG 55561 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 64597150 64597150 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_017525 exon30 c.G3760A p.E1254K CAGCCTCGTTGAG . 29 5 27 0 . . KIAA1586 57691 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 56918360 56918360 + Missense_Mutation SNP G G C novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_020931 exon4 c.G1063C p.V355L GAATTGGTGTCAA . 65 27 73 0 . . SLC41A3 54946 hgsc.bcm.edu 37 3 125725323 125725323 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc SLC41A3_ENST00000315891,NS,carcinoma,0,1 SLC41A3_ENST00000315891 NM_001008485 exon12 c.G1451A p.C484Y TGAGTGCAGATGA . 40 2 39 0 . 0 GTDC1 79712 hgsc.bcm.edu 37 2 144728223 144728223 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_001006636 exon8 c.C982A p.P328T TACCTGGGACATC . 88 4 87 0 . . ND6 0 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 MT 14487 14487 + Missense_Mutation SNP T T C novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . ENST00000361681 exon1 c.A187G p.M63V CCATCATTCCCCC . 445 427 341 0 . . CPXM1 56265 hgsc.bcm.edu 37 20 2777840 2777840 + Nonsense_Mutation SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc CPXM1,NS,carcinoma,0,1 CPXM1 NM_001184699 exon6 c.C830A p.S277X CCACCTGAGACTG . 50 2 39 0 . 0 CENPB 1059 hgsc.bcm.edu;broad.mit.edu 37 20 3765895 3765895 + Silent SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc CENPB,NS,carcinoma,0,1 CENPB NM_001810 exon1 c.G1236A p.E412E TTCTTCCTCCTCC . 24 3 12 0 . 0 BHMT2 23743 hgsc.bcm.edu 37 5 78376673 78376673 + Missense_Mutation SNP G G T rs373649954 alternate_allele TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc BHMT2,NS,NS,0,1 BHMT2 NM_017614 exon4 c.G422T p.W141L TTGCCTGGAAAAA . 48 2 60 0 . 0 CACNG5 27091 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 64873577 64873577 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_145811 exon1 c.C127T p.P43S ATTGTGCCCCAGA . 30 11 16 0 . . MYH7 4625 hgsc.bcm.edu 37 14 23896926 23896926 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc MYH7,NS,carcinoma,0,1 MYH7 NM_000257 exon16 c.G1756A p.V586M AGTCCACGATGCC . 37 2 56 0 . 0 TBC1D3P5 440419 hgsc.bcm.edu 37 17 25752452 25752452 + RNA SNP C C A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . GCTCCACATCTTG . 66 8 44 0 . . SLITRK2 84631 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 144904919 144904919 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_001144005 exon5 c.C976T p.P326S TTTGGACCCATCA . 44 5 77 0 . . T 6862 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 166580132 166580132 + Missense_Mutation SNP G G A rs368969464 TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_003181 exon3 c.C419T p.P140L GAGACGGGAGCCT . 27 7 27 0 . . NEU4 129807 hgsc.bcm.edu 37 2 242757381 242757381 + Nonsense_Mutation SNP G G A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_001167599 exon4 c.G501A p.W167X AGACTGGGCCACA . 23 6 7 0 . . POLR3C 10623 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 145601830 145601830 + Missense_Mutation SNP T T C novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_006468 exon6 c.A701G p.Y234C TGCCAATAAATCC . 51 22 41 0 . . SLC9A7 84679 hgsc.bcm.edu 37 X 46541898 46541898 + Missense_Mutation SNP G G T rs145339243 alternate_allele TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_001257291 exon2 c.C398A p.T133N TCCTGAGTGCAGC . 48 4 51 0 . . ADAM12 8038 hgsc.bcm.edu 37 10 127806650 127806650 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc ADAM12_ENST00000368679,colon,carcinoma,0,3 ADAM12_ENST00000368679 NM_021641 exon6 c.C569A p.A190E TTCTTTGCAGCGA . 44 2 46 0 . 0 MYT1L 23040 hgsc.bcm.edu;bcgsc.ca 37 2 1926757 1926757 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_015025 exon10 c.G784A p.V262M AGTCCACTGTTTC . 86 4 81 0 . . MBNL3 55796 hgsc.bcm.edu 37 X 131526199 131526199 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_018388 exon3 c.C506A p.P169Q AGTTTTGGGCCAA . 99 3 117 0 . . OR5P2 120065 hgsc.bcm.edu 37 11 7818383 7818383 + Missense_Mutation SNP G G C novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc .,7 . NM_153444 exon1 c.C107G p.S36C TTACCAGATAGGA . 27 2 13 1 . 68 RECQL4 9401 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 8 145739898 145739898 + Silent SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_004260 exon10 c.G1632A p.L544L CGGTGGCAGGCCA . 31 16 27 0 . . PTCHD2 57540 hgsc.bcm.edu 37 1 11596598 11596598 + Missense_Mutation SNP C C T rs201820638 bycluster TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc PTCHD2,NS,carcinoma,0,1 PTCHD2 NM_020780 exon21 c.C4034T p.A1345V TCATGGCGCCCAG . 19 2 22 0 0.001 0 OR2G3 81469 hgsc.bcm.edu 37 1 247769640 247769640 + Missense_Mutation SNP C C A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc OR2G3,NS,carcinoma,0,1 OR2G3 NM_001001914 exon1 c.C753A p.F251L TATATTCTATGGC . 45 2 27 0 . 0 EPPK1 83481 hgsc.bcm.edu 37 8 144940742 144940742 + Missense_Mutation SNP G G A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_031308 exon1 c.C6680T p.A2227V ACGCCCGCGATGC . 70 5 43 0 . . MAML2 84441 hgsc.bcm.edu;bcgsc.ca 37 11 95825254 95825254 + Silent SNP C C T rs61749250 bycluster TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc MAML2,caecum,carcinoma,0,2 MAML2 NM_032427 exon2 c.G1941A p.Q647Q CTGCTGCTGTTGT . 39 4 51 0 . 0 FRY 10129 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 32753081 32753081 + Missense_Mutation SNP C C A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_023037 exon22 c.C2782A p.P928T GCAAAACCCAGTA . 77 21 77 0 . . KCNK17 89822 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 39278778 39278778 + Silent SNP G G A rs368724952 TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_001135111 exon2 c.C243T p.V81V TTGGACGACATCC . 30 4 27 0 . . DGKI 9162 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 137150763 137150763 + Missense_Mutation SNP T T C novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_004717 exon27 c.A2527G p.M843V TCTCCATCACAAA . 45 17 49 0 . . UBE2F-SCLY 0 hgsc.bcm.edu 37 2 238991562 238991562 + RNA SNP T T C rs367917223 TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . TCTTTCTTTTTTT . 16 4 8 1 . . PPM1G 5496 hgsc.bcm.edu 37 2 27605369 27605369 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc PPM1G,NS,carcinoma,0,1 PPM1G NM_177983 exon8 c.C1305A p.F435L GACCATGAATTCA . 31 2 35 0 . 0 ZNF829 374899 hgsc.bcm.edu;bcgsc.ca 37 19 37382535 37382535 + Silent SNP C C A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_001171979 exon6 c.G1401T p.G467G GGCCTTCCCACAT . 62 4 66 0 . . XPNPEP2 7512 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 128881717 128881717 + Nonsense_Mutation SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_003399 exon7 c.G625T p.E209X CTGCAGGAGGCAT . 43 5 46 0 . . AIMP2 7965 hgsc.bcm.edu;bcgsc.ca 37 7 6062935 6062935 + Silent SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_006303 exon4 c.G576T p.V192V TTCAGTGCCGAAG . 62 4 42 0 . . TINF2 26277 hgsc.bcm.edu 37 14 24710311 24710311 + Silent SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc TINF2_ENST00000267415,caecum,carcinoma,0,2 TINF2_ENST00000267415 NM_001099274 exon5 c.G519A p.V173V ACTCAGCACATCC . 31 2 45 0 . 0 TMEM43 79188 hgsc.bcm.edu 37 3 14183116 14183116 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_024334 exon12 c.G1024T p.D342Y TTCCGAGACCTGG . 45 3 52 0 . . SIDT1 54847 hgsc.bcm.edu 37 3 113321990 113321990 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc SIDT1,mucosal,malignant_melanoma,0,1 SIDT1 NM_017699 exon12 c.G1256T p.R419L TCATCCGGACCAA . 26 2 40 0 . 0 ARAF 369 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 47426127 47426127 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_001256196 exon7 c.C656T p.P219L CCACTCCCAACGT . 54 36 66 0 . . NFE2L2 4780 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 178098799 178098799 + Missense_Mutation SNP T T A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc NFE2L2,NS,carcinoma,0,9 NFE2L2 NM_006164 exon2 c.A246T p.E82D GAGAAATTCACCT . 94 45 68 0 . 0 HLA-B 3106 hgsc.bcm.edu 37 6 31324018 31324018 + Missense_Mutation SNP G G A rs41542712 bycluster TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_005514 exon3 c.C545T p.A182V AGGTAGGCTCTCC . 57 7 29 0 0.001 . IL12RB2 3595 hgsc.bcm.edu 37 1 67787288 67787288 + Missense_Mutation SNP C C A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc IL12RB2,NS,carcinoma,0,1 IL12RB2 NM_001559 exon3 c.C80A p.A27E CAGATGCGTGCAA . 67 3 40 0 . 0 EML4 27436 hgsc.bcm.edu 37 2 42483696 42483696 + Silent SNP T T C novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_001145076 exon3 c.T264C p.G88G AAGTGGTGCAAAC . 110 5 93 0 . . ZMIZ2 83637 hgsc.bcm.edu 37 7 44806150 44806150 + Missense_Mutation SNP T T C novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_031449 exon18 c.T2543C p.L848S AGTCCTTGGGCCA . 91 3 60 0 . . TOM1 10043 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 22 35719501 35719501 + Missense_Mutation SNP G G A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_001135732 exon5 c.G379A p.A127T GCTGACGCGTTCC . 14 4 10 0 . . IFITM3 10410 hgsc.bcm.edu 37 11 320723 320723 + Missense_Mutation SNP C C T rs56227617 TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc IFITM3,brain,glioma,0,1 IFITM3 NM_021034 exon1 c.G91A p.V31M CCAGCACAGCCAC . 44 4 20 1 . 0 WHSC1 7468 hgsc.bcm.edu;bcgsc.ca 37 4 1918727 1918727 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_133335 exon4 c.G890T p.S297I AGGAAAGTGCCAA . 74 4 98 0 . . JOSD1 9929 hgsc.bcm.edu 37 22 39085046 39085046 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc JOSD1,NS,lymphoid_neoplasm,+2,1 JOSD1 NM_014876 exon3 c.C403A p.L135I TTTTGAGGGGCAG . 34 2 37 0 . +2 ZNF676 163223 hgsc.bcm.edu 37 19 22363737 22363737 + Missense_Mutation SNP C C G novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_001001411 exon3 c.G782C p.G261A CTAAATCCTTTGC . 80 4 60 0 . . RBL1 5933 hgsc.bcm.edu 37 20 35651208 35651208 + Missense_Mutation SNP G G A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc RBL1,NS,carcinoma,0,1 RBL1 NM_183404 exon17 c.C2404T p.R802C GTAAGCGTACACT . 73 3 56 0 . 0 DNAAF3 352909 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 55672774 55672774 + Missense_Mutation SNP G G A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_001256714 exon7 c.C880T p.H294Y GGGGGTGAATGAC . 74 19 60 0 . . HECW2 57520 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 197138745 197138745 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_020760 exon16 c.G3238A p.A1080T ACATACCCACTGG . 40 19 45 0 . . HEPH 9843 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 65476101 65476101 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_138737 exon17 c.C2987T p.T996I TGGCAACCCATGG . 55 15 70 0 . . SH3GLB1 51100 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 87200770 87200770 + Missense_Mutation SNP C C G novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_001206651 exon8 c.C756G p.H252Q CCATCACCTTCGC . 89 15 72 0 . . DSPP 1834 hgsc.bcm.edu 37 4 88537123 88537123 + Silent SNP C C T rs372453629 TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc DSPP,NS,carcinoma,0,2 DSPP NM_014208 exon5 c.C3309T p.S1103S CAGCAGCGACAGC . 2 2 7 2 . 0 SLC9A3 6550 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 488540 488540 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_004174 exon3 c.C566A p.A189E ACAGCCGCCATGA . 169 39 74 0 . . SMC6 79677 hgsc.bcm.edu 37 2 17906563 17906563 + Silent SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc .,1 . NM_001142286 exon9 c.G687A p.T229T TTCTTTCGTTTCC . 60 3 35 0 . 102 C3P1 388503 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 10157072 10157072 + RNA SNP G G A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . GAGGCTGGGCTCC . 36 19 21 0 . . C1orf112 55732 hgsc.bcm.edu;bcgsc.ca 37 1 169796306 169796306 + Silent SNP G G A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_018186 exon11 c.G963A p.Q321Q ATTTCAGCCTTTC . 86 4 65 0 . . ST3GAL3 6487 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 44290442 44290442 + Silent SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_174963 exon5 c.C294T p.D98D CCTTGACTGCATA . 99 18 83 0 . . AGAP2 116986 hgsc.bcm.edu 37 12 58131312 58131312 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc AGAP2_ENST00000547588,NS,carcinoma,0,1 AGAP2_ENST00000547588 NM_001122772 exon1 c.G718A p.A240T CGGCGGCGGTGGC . 38 2 30 0 . 0 PPA1 5464 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 71978550 71978550 + Silent SNP T T C novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_021129 exon3 c.A147G p.E49E TGGTACTTCAACT . 38 6 43 0 . . EEF1E1 9521 hgsc.bcm.edu;bcgsc.ca 37 6 8097530 8097530 + Silent SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_001135650 exon2 c.C258A p.S86S TTTACTGGAGTGC . 82 4 66 0 . . SGK2 10110 hgsc.bcm.edu;bcgsc.ca 37 20 42213625 42213625 + Missense_Mutation SNP C C T rs140923021 TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_016276 exon12 c.C1253T p.A418V CTTATGCGCCAGA . 62 4 57 0 0.000 . TULP4 56995 hgsc.bcm.edu 37 6 158924680 158924680 + Missense_Mutation SNP C C T rs200432004 TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc TULP4,NS,malignant_melanoma,0,1 TULP4 NM_020245 exon13 c.C3985T p.R1329W CCCCAGCGGACAG . 69 3 61 0 . 0 NEB 4703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 152384096 152384096 + Missense_Mutation SNP C C G novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_001271208 exon148 c.G21844C p.D7282H TATAGTCCAGCTG . 38 8 51 0 . . TM4SF5 9032 hgsc.bcm.edu 37 17 4675353 4675353 + Nonsense_Mutation SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc TM4SF5,NS,carcinoma,0,1 TM4SF5 NM_003963 exon1 c.C136T p.Q46X AGCTTGCAAGTCT . 50 3 38 0 . 0 CCDC103 388389 hgsc.bcm.edu 37 17 42979874 42979874 + Nonsense_Mutation SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc CCDC103,colon,carcinoma,0,1 CCDC103 NM_001258395 exon4 c.G418T p.G140X GATGTGGGATTTG . 30 2 21 0 . 0 TDRD9 122402 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 104471611 104471611 + Missense_Mutation SNP C C T rs199531888 TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc TDRD9_ENST00000409874,NS,carcinoma,0,2 TDRD9_ENST00000409874 NM_153046 exon15 c.C1582T p.R528C TTTCAGCGTTGTC . 41 4 51 0 0.001 0 CDHR2 54825 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 176002399 176002399 + Nonsense_Mutation SNP C C A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_017675 exon9 c.C740A p.S247X TTTACTCGGCCTC . 33 14 16 0 . . ZC3H7B 23264 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 41723243 41723243 + Missense_Mutation SNP A A G novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_017590 exon5 c.A319G p.K107E AGCGAGAAGGCGC . 35 11 37 0 . . GPR123 84435 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 134940752 134940752 + Missense_Mutation SNP C C A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_001083909 exon6 c.C417A p.S139R CGTCAGCGGAGGG . 73 35 70 0 . . MGAM 8972 hgsc.bcm.edu 37 7 141794453 141794453 + Missense_Mutation SNP A A T rs202001107 TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc MGAM_ENST00000549489,NS,carcinoma,0,3 MGAM_ENST00000549489 NM_004668 exon39 c.A4652T p.Y1551F TATCCTATGTGAG . 60 3 41 2 . 0 MICAL3 57553 hgsc.bcm.edu;bcgsc.ca 37 22 18370200 18370200 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_015241 exon14 c.C1893A p.D631E CAAGGTGTCTGGG . 57 4 41 0 . . MACF1 23499 hgsc.bcm.edu 37 1 39903515 39903515 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_012090 exon68 c.C11878T p.P3960S ATGCCACCACTGA . 59 4 42 0 . . ZNF134 7693 hgsc.bcm.edu 37 19 58132757 58132757 + Missense_Mutation SNP G G A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_003435 exon3 c.G1270A p.A424T CACACTGCAGGCA . 63 4 74 0 . . TCHH 7062 hgsc.bcm.edu 37 1 152082449 152082449 + Missense_Mutation SNP T T C rs199978971 TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc TCHH,NS,carcinoma,0,1 TCHH NM_007113 exon3 c.A3244G p.K1082E CTTCCTTCCGATA . 67 3 35 1 . 0 PAGE2B 389860 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 55102523 55102523 + Missense_Mutation SNP G G A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_001015038 exon2 c.G49A p.D17N GGAAATGACCAAG . 73 45 109 0 . . TPT1-AS1 100190939 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 13 45957312 45957312 + RNA SNP A A C novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . TAAGGTACCTGCC . 40 6 49 0 . . BAP1 8314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 52442599 52442599 + Missense_Mutation SNP A A G novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_004656 exon4 c.T146C p.L49P TTGAACAGGAAGA . 20 16 38 0 . . ZNF542 147947 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 56888251 56888251 + RNA SNP A A C novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . GTGCAGAGATTAA . 21 8 24 0 . . SUPT7L 9913 hgsc.bcm.edu 37 2 27878431 27878431 + Silent SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc SUPT7L,NS,carcinoma,0,1 SUPT7L NM_014860 exon5 c.C783A p.V261V AGGATTGACAATC . 25 2 31 0 . 0 FAM50B 26240 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 3850817 3850817 + Missense_Mutation SNP G G A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_012135 exon2 c.G772A p.A258T GCCAGGGCGAGGG . 30 8 31 0 . . SLC9A9 285195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 143567100 143567100 + Missense_Mutation SNP A A G novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_173653 exon1 c.T65C p.V22A AGCTCCACCGCTC . 66 14 108 0 . . SNCG 6623 hgsc.bcm.edu;bcgsc.ca 37 10 88718478 88718478 + Missense_Mutation SNP C C A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_003087 exon1 c.C24A p.F8L GGGCTTCTCCATC . 69 4 43 0 . . UNC79 57578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 14 94088818 94088818 + Nonsense_Mutation SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_020818 exon30 c.C4708T p.R1570X CAAAAACGAGACC . 24 20 37 0 . . FAM71A 149647 hgsc.bcm.edu 37 1 212798528 212798528 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc FAM71A,NS,carcinoma,0,1 FAM71A NM_153606 exon1 c.G309T p.Q103H TGGCCAGGCCACC . 54 3 28 0 . 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 179437209 179437209 + Missense_Mutation SNP T T A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_001267550 exon326 c.A73650T p.K24550N CTTGATTTTTGAA . 44 10 35 0 . . F2RL1 2150 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 76128777 76128777 + Silent SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc F2RL1,NS,carcinoma,0,1 F2RL1 NM_005242 exon2 c.C345T p.A115A CATGGCCAATCTG . 27 9 35 0 . 0 GSK3A 2931 hgsc.bcm.edu 37 19 42737289 42737289 + Silent SNP A A G novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_019884 exon8 c.T1071C p.P357P AATCTGAGGGAAC . 79 4 58 0 . . TEX2 55852 hgsc.bcm.edu;broad.mit.edu 37 17 62271115 62271115 + Silent SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_018469 exon4 c.G1980A p.P660P AGCTGGCGGCTTC . 81 4 69 0 . . MIR548N 100302152 hgsc.bcm.edu 37 2 179348065 179348065 + RNA SNP A A T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . AAAAGAATTAAAA . 123 4 72 0 . . CHTF18 63922 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 16 845949 845949 + Silent SNP G G A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_022092 exon18 c.G2328A p.V776V CTAGGTGAGCACA . 20 7 16 0 . . ZIC3 7547 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 136649399 136649399 + Silent SNP G G A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_003413 exon1 c.G549A p.Q183Q CAACCAGGTCCAC . 28 11 36 0 . . ATM 472 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 108121693 108121693 + Missense_Mutation SNP C C A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_000051 exon10 c.C1501A p.Q501K CAAATACAAGCTG . 56 37 100 0 . . HDGF 3068 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 156713449 156713449 + Missense_Mutation SNP A A T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_001126050 exon5 c.T759A p.H253Q CCTCTCATGATCT . 50 10 37 0 . . GLTP 51228 hgsc.bcm.edu 37 12 110295408 110295408 + Silent SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc GLTP,mouth,carcinoma,0,1 GLTP NM_016433 exon3 c.C219A p.I73I CTCCAGGATGTTC . 42 2 39 0 . 0 IRF9 10379 hgsc.bcm.edu 37 14 24632181 24632181 + Missense_Mutation SNP G G A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc IRF9,caecum,carcinoma,0,1 IRF9 NM_006084 exon3 c.G187A p.A63T GCCTGGGCAATAT . 44 2 49 0 . 0 SLC39A5 283375 hgsc.bcm.edu;bcgsc.ca 37 12 56630250 56630250 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_173596 exon9 c.C1016T p.A339V GGATGGCCCTTCA . 71 4 74 0 . . PPM1D 8493 hgsc.bcm.edu 37 17 58740756 58740756 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_003620 exon6 c.G1661T p.G554V GAAATGGCTTAAG . 66 3 51 0 . . BAI3 577 hgsc.bcm.edu 37 6 69665993 69665993 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc BAI3,colon,carcinoma,0,1 BAI3 NM_001704 exon7 c.C1273T p.R425W AGAAGCCGGCAGT . 11 2 40 0 . 0 DENND4B 9909 hgsc.bcm.edu 37 1 153907303 153907303 + Silent SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc DENND4B_ENST00000361217,bladder,carcinoma,0,2 DENND4B_ENST00000361217 NM_014856 exon18 c.G2706A p.Q902Q CTGCTGCTGTTGC . 34 2 16 0 . 0 TRIM39 56658 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 30303613 30303613 + Missense_Mutation SNP G G A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_172016 exon5 c.G641A p.R214Q TTTCACGACTGGA . 32 14 26 0 . . LRRIQ4 344657 hgsc.bcm.edu 37 3 169555341 169555341 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc LRRIQ4,rectum,carcinoma,0,1 LRRIQ4 NM_001080460 exon5 c.G1605T p.K535N ACAAAAGAAAGGA . 47 3 85 0 . 0 ARHGAP21 57584 hgsc.bcm.edu;bcgsc.ca 37 10 24889838 24889838 + Missense_Mutation SNP G G A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_020824 exon14 c.C2869T p.P957S TCCATGGCCGAAT . 81 4 84 0 . . EP400 57634 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 132504692 132504692 + Missense_Mutation SNP C C G novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_015409 exon22 c.C4376G p.S1459C CGGCCTCTGCTGC . 16 15 24 0 . . MLL3 58508 hgsc.bcm.edu 37 7 151921114 151921114 + Nonsense_Mutation SNP A A T rs4024337 TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc MLL3_ENST00000355193,NS,carcinoma,0,10 MLL3_ENST00000355193 NM_170606 exon20 c.T3309A p.C1103X TTGTCTACATTGC . 98 5 89 1 . 0 EGFLAM 133584 hgsc.bcm.edu 37 5 38407067 38407067 + Silent SNP T T C novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_001205301 exon8 c.T966C p.A322A GGTGGCTCCCCAG . 80 4 30 0 . . KLRF1 51348 hgsc.bcm.edu 37 12 9985911 9985911 + Missense_Mutation SNP T T C novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_016523 exon3 c.T197C p.V66A AGGGAGTATTGCT . 83 4 78 0 . . HLA-DMA 3108 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 32918505 32918505 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_006120 exon2 c.C164A p.P55H ACACTGGGACTCC . 25 11 20 0 . . ATAD5 79915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 29220847 29220847 + Missense_Mutation SNP T T C novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_024857 exon21 c.T4976C p.L1659S CCTTCTTAGATGC . 111 24 64 0 . . CKAP4 10970 hgsc.bcm.edu 37 12 106633701 106633701 + Nonsense_Mutation SNP C C A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc CKAP4,NS,carcinoma,0,1 CKAP4 NM_006825 exon2 c.G910T p.E304X CCCACTCTCTGGA . 55 3 40 0 . 0 TMEM110-MUSTN1 100526772 hgsc.bcm.edu 37 3 52876847 52876847 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc .,1 . NM_001198974 exon7 c.C748A p.H250N CCTCGTGGGATGC . 36 3 45 0 . . PCNT 5116 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 47769730 47769730 + Missense_Mutation SNP T T C novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_006031 exon8 c.T1340C p.L447P AACAGCTGGAGGT . 52 34 79 0 . . KIAA0368 23392 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 114192870 114192870 + Missense_Mutation SNP A A G novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_001080398 exon10 c.T1421C p.M474T TTGTACATCTTAT . 22 8 43 0 . . IPO5 3843 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 98652792 98652792 + Splice_Site SNP G G A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_002271 exon13 c.1056-1G>A . TGTTTAGCAATGC . 38 10 30 0 . . CAMTA1 23261 broad.mit.edu 37 1 7811427 7811427 + Missense_Mutation SNP G G A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . CAMTA1 NM_015215 exon20 c.G4858A p.A1620T CGGACGGCTGTGA . 28 3 44 0 . 226 FMN2 56776 broad.mit.edu 37 1 240341360 240341360 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . FMN2 NM_020066 exon3 c.C1922T p.A641V AGGATGCTGAAAC . 67 3 50 0 . 451 . 0 broad.mit.edu 37 1 202827070 202827071 + RNA DEL TT TT - novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . TCTTTCTTTTTTT . 6 2 5 0 . . . 0 broad.mit.edu 37 1 143663875 143663875 + RNA SNP G G T rs487704 by2hit2allele TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . GACACAGACCTGA . 79 4 59 1 G|1.000;|0.000 . C10orf128 170371 broad.mit.edu 37 10 50396360 50396360 + Silent SNP G G A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . C10orf128 NM_001010863 exon1 c.C22T p.L8L TCCTCAGCATGCT . 9 3 10 0 . 20 FAM35A 54537 broad.mit.edu 37 10 88911830 88911830 + Missense_Mutation SNP C C A rs3129516 TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc FAM35A,NS,carcinoma,0,3 FAM35A NM_019054 exon3 c.C719A p.T240K CTGATACAGAATT . 219 4 214 1 . 48 SKIDA1 387640 broad.mit.edu 37 10 21805720 21805720 + Silent SNP A A G novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_207371 exon4 c.T1032C p.H344H GTGGTGATGGTGG . 17 3 21 0 . . . 0 broad.mit.edu 37 14 22887281 22887281 + RNA SNP C C G novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . AGTTCCCAGGCCT . 14 6 23 0 . . . 0 broad.mit.edu 37 15 20563408 20563417 + RNA DEL CCTCTCCCTT CCTCTCCCTT - rs59811558 TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . CCAGAGCCTCTCC . 52 8 45 0 . . DOK4 0 broad.mit.edu;bcgsc.ca 37 16 57509842 57509842 + Missense_Mutation SNP G G A rs368504381 TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . DOK4 NM_018110 exon3 c.C94T p.R32W ATTTCCGGAACAC . 72 6 70 1 . 19 . 0 broad.mit.edu 37 16 32152597 32152597 + RNA DEL A A - novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . GCACATAATGAGC . 44 7 43 1 . . . 0 broad.mit.edu 37 17 45125501 45125501 + RNA SNP A A G rs3175679 TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . AGATGAAGAAAAA . 57 3 39 0 A|1.000;|0.000 . . 0 broad.mit.edu;ucsc.edu 37 17 7960608 7960608 + RNA SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . TGTTTCCAACAGT . 76 30 67 0 . . ZNF98 148198 broad.mit.edu 37 19 22586259 22586259 + Missense_Mutation SNP C C T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc ZNF98_ENST00000357774,right_lower_lobe,carcinoma,+1,2 ZNF98 NM_001098626 exon2 c.G86A p.C29Y TCCAGGCATTGCC . 84 5 87 1 . 230 ANKRD20A8P 0 broad.mit.edu 37 2 95518658 95518658 + RNA DEL A A - rs375429617 TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . ATTAAGAAAAAAA . 9 4 5 0 . . KIAA1715 80856 broad.mit.edu 37 2 176794915 176794915 + Missense_Mutation SNP T T C novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . KIAA1715 NM_030650 exon13 c.A1067G p.H356R ACATCGTGTTCTA . 36 4 43 0 . 61 KIAA1715 80856 broad.mit.edu 37 2 176794918 176794918 + Missense_Mutation SNP T T C novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . KIAA1715 NM_030650 exon13 c.A1064G p.E355G TCGTGTTCTAAAG . 35 4 40 0 . 61 FAM86JP 0 broad.mit.edu 37 3 125648088 125648088 + RNA SNP G G A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . GCCTCCGGAAAAG . 36 6 50 2 . . SOX2 6657 broad.mit.edu;bcgsc.ca 37 3 181430207 181430226 + Frame_Shift_Del DEL GCGGCGGCGGCAACTCCACC GCGGCGGCGGCAACTCCACC - novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . SOX2 NM_003106 exon1 c.59_78del p.20_26del CGGGGGGCGGCGG . 12 8 25 0 . 28 RSPH10B 222967 broad.mit.edu;bcgsc.ca 37 7 6006556 6006556 + Silent SNP A A G novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc RSPH10B,NS,carcinoma,-2,1 RSPH10B NM_173565 exon3 c.T192C p.V64V CTGCTGAACGTTT . 111 15 103 0 . 28 COX2 4513 broad.mit.edu;bcgsc.ca 37 MT 8251 8251 + Silent SNP G G A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . ENST00000361739 exon1 c.G666A p.G222G AATAGGGCCCGTA . 40 37 37 0 . . . 0 ucsc.edu;bcgsc.ca 37 2 203055059 203055059 + Missense_Mutation SNP C C A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C Unknown Untested Somatic WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . CCTTTGCCTCAGA . 39 4 28 0 . . TMEM128 85013 ucsc.edu 37 4 4239589 4239589 + Missense_Mutation SNP C C T rs2433883 by2hit2allele TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C Unknown Untested Somatic WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc TMEM128,NS,carcinoma,+2,1 TMEM128 NM_032927 exon4 c.G400A p.V134I ACATGACAACCCC . 91 10 96 2 . 12 ADIRF 119385 ucsc.edu 37 10 88730012 88730012 + Silent SNP G G A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . NM_006829 exon2 c.G117A p.G39G GGCGGGGCAGAAA . 29 4 25 0 . . GPR133 283383 ucsc.edu 37 12 131456080 131456080 + Missense_Mutation SNP T T G rs201546462 TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 T T Unknown Untested Somatic WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . GPR133 NM_198827 exon4 c.T265G p.Y89D GGCAGGTACAACA . 52 17 61 16 . 136 ZNF276 92822 ucsc.edu 37 16 89805162 89805162 + Nonstop_Mutation SNP T T C novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 T T Unknown Untested Somatic WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . ZNF276 . . . . TAGGCCTCAGACC . 31 7 18 1 . 70 MYADM 91663 ucsc.edu 37 19 54376839 54376839 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . MYADM NM_001020818 exon2 c.G56T p.G19V CTTCGGGCCTGGG . 36 4 27 0 . 39 PI4KA 5297 ucsc.edu;bcgsc.ca 37 22 21150447 21150447 + Missense_Mutation SNP C C A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C C Unknown Untested Somatic WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . PI4KA NM_058004 exon18 c.G2264T p.G755V GCAGGGCCCTTCT . 24 4 21 0 . 313 PER3 8863 bcgsc.ca 37 1 7890026 7890026 + Missense_Mutation SNP A G G rs199947375 bycluster TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc PER3,NS,carcinoma,0,4 PER3 NM_016831 exon18 c.A2992G p.K998E CCCATGAAGAATC . 25 6 48 0 . 95 PRAMEF14 729528 bcgsc.ca 37 1 13669138 13669138 + Silent SNP A G G rs55990133 bycluster TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . PRAMEF14 NM_001099854 exon4 c.T1048C p.L350L GGCACAACAGGTC . 13 4 70 3 A|0.500;G|0.500 9 . 0 bcgsc.ca 37 1 228637197 228637197 + RNA SNP C T T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . GACATGCGGATCT . 86 10 71 0 . . . 0 bcgsc.ca 37 2 91800780 91800780 + RNA SNP T C C novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . ACTCTCTGAGGAC . 282 25 192 0 . . . 1817 bcgsc.ca 37 2 91873835 91873835 + RNA SNP A G G rs9326662 bycluster;by2hit2allele TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . CACGGCATTCCCC . 88 39 68 17 . . . 440992 bcgsc.ca 37 3 186618070 186618070 + RNA SNP C T T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . CCGCAGCGTAAAA . 39 27 65 0 . . MUC4 4585 bcgsc.ca 37 3 195509127 195509127 + Silent SNP A G G rs200879287 TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc MUC4_ENST00000463781,NS,carcinoma,0,1 MUC4 NM_018406 exon2 c.T9324C p.T3108T AGGGCTAGTGACA . 67 24 84 16 A|0.998;G|0.002 1505 BBS12 166379 bcgsc.ca 37 4 123663872 123663872 + Missense_Mutation SNP G T T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . BBS12 NM_001178007 exon3 c.G825T p.L275F AGGCTTGAGTCAT . 22 3 30 0 . 63 SPRY1 10252 bcgsc.ca 37 4 124322966 124322966 + Missense_Mutation SNP C A A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . SPRY1 NM_001258039 exon2 c.C220A p.H74N GAAAAGCATGAAA . 18 3 32 0 . 28 SETD7 80854 bcgsc.ca 37 4 140454482 140454482 + Missense_Mutation SNP C T T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc SETD7,colon,carcinoma,0,1 SETD7 NM_030648 exon3 c.G209A p.G70D CCCTGGCCCTGCA . 63 4 74 0 . 35 FRG1 2483 bcgsc.ca 37 4 190876283 190876283 + Missense_Mutation SNP C A A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . FRG1 NM_004477 exon5 c.C409A p.Q137K AGAGAACAATGGG . 270 10 411 6 . 76 ATG10 83734 bcgsc.ca 37 5 81549163 81549163 + Missense_Mutation SNP C A A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . ATG10 NM_001131028 exon8 c.C582A p.S194R GCTGAGCATTGTA . 52 4 83 0 . 23 GPR98 84059 bcgsc.ca 37 5 89969943 89969943 + Missense_Mutation SNP G T T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . GPR98 NM_032119 exon23 c.G5002T p.A1668S GTTTCTGCAATTC . 32 3 74 0 . 605 SECISBP2 79048 bcgsc.ca 37 9 91943787 91943787 + Missense_Mutation SNP G T T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . SECISBP2 NM_024077 exon5 c.G787T p.A263S CCAGCTGCAGTGT . 19 3 42 0 . 64 SLC22A9 114571 bcgsc.ca 37 11 63149670 63149670 + Missense_Mutation SNP C A A rs201804022 TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . SLC22A9 NM_080866 exon6 c.C994A p.Q332K GCAGCACAAAAAA . 94 11 88 4 . 77 . 0 bcgsc.ca 37 14 19114464 19114464 + RNA SNP T C C rs71203526 TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . GGCCTGTGCCAAT . 142 17 233 6 T|0.500;C|0.500 . LOC283922 0 bcgsc.ca 37 16 74372609 74372609 + RNA SNP G A A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . AAAAAGGAGCAAA . 90 10 98 2 . . DHRS7C 201140 bcgsc.ca 37 17 9684863 9684863 + Missense_Mutation SNP C A A novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . DHRS7C NM_001220493 exon2 c.G203T p.G68V TTCTTTCCACACA . 54 4 42 0 . 34 ZNF254 9534 bcgsc.ca 37 19 24310210 24310210 + Missense_Mutation SNP G T T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . ZNF254 NM_203282 exon4 c.G1408T p.A470S GGCAAGGCATTTA . 65 4 71 0 . 88 ICOSLG 23308 bcgsc.ca 37 21 45656893 45656893 + Missense_Mutation SNP G T T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . ICOSLG NM_015259 exon3 c.C263A p.P88Q CCGGCCGGTGACA . 35 4 38 0 . 20 . 347363 bcgsc.ca 37 X 78579158 78579158 + RNA SNP G T T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . ATGGGAGGTGCAT . 27 3 34 0 . . PRPS1 5631 bcgsc.ca 37 X 106888557 106888557 + Silent SNP C T T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . PRPS1 NM_002764 exon5 c.C681T p.G227G TTGTGGCACAATC . 51 4 71 0 . 33 FLG 2312 hgsc.bcm.edu 37 1 152279697 152279698 + Missense_Mutation DNP CT CT TG novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 CT CT . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc FLG,caecum,carcinoma,0,1 FLG NM_002016 exon3 c.A7664C p.E2555A GGCCCCTCTGATT . 104 6 71 1 . 0 . 0 broad.mit.edu 37 2 38710046 38710047 + RNA DNP TA TA AT novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 TA TA Untested Somatic Phase_I WXS none Illumina GAIIx 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc . . . . . . AATAATAAATAAA . 55 11 59 3 . . MAP3K14 9020 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 43351847 43351847 + Missense_Mutation SNP G G T novel TCGA-ZH-A8Y2-01A-11D-A417-09 TCGA-ZH-A8Y2-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 9443f09f-550c-4111-8a6d-6a74f267b0dc 581c6971-13b1-4bda-9ea8-c3dc3280aacc MAP3K14,NS,carcinoma,0,1 MAP3K14 . p.F467L . . CTCCATGAAGATG . 89 13 65 0 . 0