Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ANK2	287	hgsc.bcm.edu	37	4	114271399	114271400	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001148	exon37	c.4420_4421insA	p.E1474fs	ACATCAGAAAAAA	.	127	42	97	0	.	.
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	85043205	85043218	+	Frame_Shift_Del	DEL	CAGGTGAGGATGTT	CAGGTGAGGATGTT	-	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	CAGGTGAGGATGTT	CAGGTGAGGATGTT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001370	exon76	c.12370_12373del	p.4124_4125del	CAACCACAGGTGA	.	59	12	44	0	.	.
SPRED1	161742	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	38643598	38643607	+	Frame_Shift_Del	DEL	AGACCCTATT	AGACCCTATT	-	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	AGACCCTATT	AGACCCTATT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_152594	exon7	c.1067_1076del	p.356_359del	TGCTCCAGACCCT	.	41	10	61	0	.	.
STOX1	219736	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	70645255	70645259	+	Frame_Shift_Del	DEL	ACCCT	ACCCT	-	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	ACCCT	ACCCT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	STOX1,colon,carcinoma,0,1	STOX1	NM_152709	exon3	c.1702_1706del	p.568_569del	TAAATGACCCTAC	.	44	16	32	0	.	0
HJURP	55355	hgsc.bcm.edu	37	2	234762542	234762542	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	HJURP,NS,carcinoma,0,1	HJURP	NM_018410	exon2	c.C132A	p.F44L	GTCCTCGAAGGGC	.	32	2	29	0	.	0
CABIN1	23523	hgsc.bcm.edu	37	22	24573580	24573580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001199281	exon36	c.G6314T	p.S2105I	CCCCCAGCAGTGG	.	49	4	52	0	.	.
CDH7	1005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	63489459	63489459	+	Silent	SNP	C	C	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_004361	exon5	c.C768T	p.N256N	TGTCAACGATAAT	.	38	10	26	0	.	.
SSX6	280657	hgsc.bcm.edu	37	X	47977977	47977977	+	RNA	SNP	G	G	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	.	.	.	.	AAGTGAGAGACAT	.	24	8	25	0	.	.
RB1CC1	9821	hgsc.bcm.edu	37	8	53570077	53570077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	RB1CC1,colon,carcinoma,0,2	RB1CC1	NM_001083617	exon15	c.C2312A	p.A771E	TCTATCGCATTGA	.	31	2	43	0	.	0
KRTAP10-7	386675	hgsc.bcm.edu	37	21	46020608	46020608	+	Silent	SNP	C	C	T	rs374137541	bycluster	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	KRTAP10-7_ENST00000380102,NS,carcinoma,0,2	KRTAP10-7_ENST00000380102	NM_198689	exon1	c.C87T	p.S29S	TTGCTCCGACTCC	.	108	6	98	2	.	0
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	6997830	6997830	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_005559	exon33	c.G4717C	p.D1573H	CGGCATCACCAAT	.	51	22	51	0	.	.
CDH5	1003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	66424338	66424338	+	Missense_Mutation	SNP	C	C	T	rs375751151	alternate_allele	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001795	exon6	c.C814T	p.R272C	GACACCCGTGTGG	.	49	19	33	0	.	.
CHD9	80205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	53191285	53191285	+	Silent	SNP	A	A	G	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_025134	exon2	c.A1284G	p.S428S	TAATTCAAGTCAC	.	33	8	19	0	.	.
ARMC8	25852	hgsc.bcm.edu	37	3	137960639	137960639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	ARMC8_ENST00000481646,NS,carcinoma,0,3	ARMC8_ENST00000481646	NM_213654	exon12	c.G810T	p.L270F	TTGTTTGGTTCGA	.	41	2	34	0	.	0
MAML2	84441	hgsc.bcm.edu	37	11	95825254	95825254	+	Silent	SNP	C	C	T	rs61749250	bycluster	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	MAML2,caecum,carcinoma,0,2	MAML2	NM_032427	exon2	c.G1941A	p.Q647Q	CTGCTGCTGTTGT	.	44	2	34	0	.	0
SSTR4	6754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	23016852	23016852	+	Silent	SNP	C	C	T	rs369953610		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001052	exon1	c.C732T	p.R244R	CCTGCGCGCTGGC	.	19	8	33	0	.	.
ITGAL	3683	hgsc.bcm.edu	37	16	30525161	30525161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_002209	exon25	c.G2856T	p.M952I	GCACATGTACCAG	.	79	4	60	0	.	.
RGS20	8601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	54852270	54852270	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_170587	exon3	c.T645A	p.C215X	CTGCTGTTGTAGC	.	39	14	24	0	.	.
ZHX3	23051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	39832988	39832988	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_015035	exon3	c.T569C	p.M190T	CCTTTCATTATCT	.	24	10	19	0	.	.
NR1I3	9970	hgsc.bcm.edu	37	1	161202597	161202597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	NR1I3_ENST00000428574,right_upper_lobe,carcinoma,0,2	NR1I3_ENST00000428574	NM_005122	exon5	c.G548T	p.R183L	ACTCACCGGAAGA	.	50	2	33	1	.	0
RRN3	54700	hgsc.bcm.edu	37	16	15188060	15188060	+	Missense_Mutation	SNP	G	G	A	rs201504364	bycluster	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	RRN3,NS,carcinoma,0,3	RRN3	NM_018427	exon1	c.C31T	p.P11S	CTCCCGGCAAACG	.	79	9	70	2	0.003	0
RRN3	54700	hgsc.bcm.edu	37	16	15188066	15188066	+	Missense_Mutation	SNP	G	G	A	rs200006712	bycluster	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	RRN3,NS,carcinoma,0,3	RRN3	NM_018427	exon1	c.C25T	p.R9C	GCAAACGCGTGTG	.	79	9	68	2	0.003	0
MST1	4485	hgsc.bcm.edu	37	3	49723522	49723522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	MST1,NS,carcinoma,0,2	MST1	NM_020998	exon9	c.C1120T	p.R374C	TACAACGCCGGAT	.	41	4	37	0	.	0
ZNF33B	7582	hgsc.bcm.edu	37	10	43089614	43089614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	ZNF33B,NS,carcinoma,0,1	ZNF33B	NM_006955	exon5	c.C784A	p.L262I	ACAAGAGGGATGA	.	48	2	46	0	.	0
GOLGA2P5	55592	hgsc.bcm.edu	37	12	100552529	100552529	+	RNA	SNP	G	G	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	.	.	.	.	GTTCCCGTTTCCT	.	72	4	61	0	.	.
TACC2	10579	hgsc.bcm.edu;bcgsc.ca	37	10	123970434	123970434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_206862	exon9	c.G6494T	p.S2165I	TCCCCAGTGGGGA	.	56	4	69	0	.	.
ZMIZ2	83637	hgsc.bcm.edu	37	7	44804019	44804019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	ZMIZ2,NS,carcinoma,0,1	ZMIZ2	NM_031449	exon14	c.G1862T	p.C621F	TACAGTGCTTTGA	.	18	2	29	0	.	0
ND4	0	hgsc.bcm.edu	37	MT	12125	12125	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	ENST00000361381	exon1	c.G1366A	p.G456X	ATTACCGGGTTTT	.	33	23	8	0	.	.
TRIM56	81844	hgsc.bcm.edu	37	7	100732027	100732027	+	Silent	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	TRIM56_ENST00000306085,NS,carcinoma,0,2	TRIM56_ENST00000306085	NM_030961	exon3	c.G1434T	p.L478L	AGCCCTGGGGCCG	.	29	2	32	0	.	0
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	134986716	134986716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_018666	exon4	c.C301T	p.P101S	ACTGCTCCACCAT	.	68	14	50	0	.	.
SENP3	26168	hgsc.bcm.edu	37	17	7466484	7466484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	SENP3_ENST00000429205,colon,carcinoma,0,1	SENP3_ENST00000429205	NM_015670	exon2	c.C91T	p.R31C	CGGGAGCGTCTTC	.	64	3	75	0	.	0
GP1BA	2811	hgsc.bcm.edu;bcgsc.ca	37	17	4837171	4837171	+	Silent	SNP	G	G	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_000173	exon2	c.G1272A	p.P424P	CACCCCGGAGCCC	.	42	7	29	0	.	.
EFTUD1P1	648809	hgsc.bcm.edu;bcgsc.ca	37	15	84789851	84789851	+	RNA	SNP	T	T	C	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	.	.	.	.	TCTCACTCAAGAA	.	57	5	53	0	.	.
ZNF98	148198	hgsc.bcm.edu	37	19	22574573	22574573	+	Silent	SNP	C	C	T	rs74174065	alternate_allele	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	ZNF98_ENST00000357774,NS,carcinoma,0,2	ZNF98_ENST00000357774	NM_001098626	exon4	c.G1464A	p.K488K	GTAGGGCTTCTCT	.	46	4	38	1	.	0
BRAT1	221927	hgsc.bcm.edu	37	7	2586990	2586990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	BRAT1,NS,carcinoma,0,1	BRAT1	NM_152743	exon3	c.G250A	p.A84T	GGGCTGCGAAGGT	.	44	2	52	0	.	0
TLL1	7092	hgsc.bcm.edu	37	4	166999170	166999170	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	TLL1,right_lower_lobe,carcinoma,0,1	TLL1	NM_012464	exon18	c.C2430A	p.H810Q	TGGCCACCGAATC	.	41	2	45	0	.	0
GALNTL5	168391	hgsc.bcm.edu	37	7	151699823	151699823	+	Missense_Mutation	SNP	G	G	T	rs149988530	alternate_allele	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	GALNTL5,NS,carcinoma,0,1	GALNTL5	NM_145292	exon6	c.G683T	p.S228I	TGGACAGCCACTG	.	44	2	42	0	.	0
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	141812821	141812821	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_018557	exon10	c.C1416G	p.S472R	TGCATGGCTTCTG	.	37	12	39	0	.	.
KIAA1468	57614	hgsc.bcm.edu	37	18	59919949	59919949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	KIAA1468,colon,carcinoma,0,1	KIAA1468	NM_020854	exon12	c.C1786T	p.R596C	CCAACACGTGTAG	.	41	2	36	0	.	0
SCAPER	49855	hgsc.bcm.edu	37	15	77046217	77046217	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	SCAPER_ENST00000538941,NS,carcinoma,0,2	SCAPER_ENST00000538941	NM_020843	exon14	c.C1798A	p.H600N	CAGCATGAAGTAA	.	38	2	32	0	.	0
HIATL1	84641	hgsc.bcm.edu	37	9	97177491	97177491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_032558	exon2	c.C160A	p.L54I	ATCTTCCTTGAAT	.	98	4	112	0	.	.
ZNF615	284370	hgsc.bcm.edu	37	19	52497156	52497156	+	Silent	SNP	C	C	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	ZNF615,NS,carcinoma,0,2	ZNF615	NM_001199324	exon7	c.G1206A	p.Q402Q	AGTTTGCTGATGT	.	47	2	37	0	.	0
NAV1	89796	hgsc.bcm.edu	37	1	201749556	201749556	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	NAV1,NS,carcinoma,0,1	NAV1	NM_020443	exon4	c.G1234T	p.E412X	TGGGATGAAAGCA	.	41	2	28	0	.	0
SHKBP1	92799	hgsc.bcm.edu	37	19	41088331	41088331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	SHKBP1,colon,carcinoma,0,1	SHKBP1	NM_138392	exon10	c.G919A	p.G307R	CACACAGGGCGCA	.	49	2	61	0	.	0
RNU5F-1	26828	hgsc.bcm.edu	37	1	220284124	220284124	+	RNA	SNP	A	A	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	.	.	.	.	TTTTTTAAAGTTA	.	75	4	39	0	.	.
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	57569279	57569279	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_002332	exon23	c.A3584G	p.N1195S	GCCACAACTGCTC	.	29	5	15	0	.	.
PARP2	10038	hgsc.bcm.edu	37	14	20820419	20820419	+	Silent	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	PARP2_ENST00000250416,rectum,carcinoma,0,2	PARP2_ENST00000250416	NM_005484	exon7	c.G552T	p.T184T	CAAAACGAAAAAC	.	53	3	51	0	.	0
FAM173B	134145	hgsc.bcm.edu;bcgsc.ca	37	5	10227607	10227607	+	Silent	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_199133	exon5	c.C648A	p.G216G	TTCACGGCCTCTA	.	58	4	44	0	.	.
MYO5B	4645	hgsc.bcm.edu	37	18	47405423	47405423	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001080467	exon24	c.G3168C	p.M1056I	TTTCTTCATGAGA	.	58	5	38	0	.	.
ACAN	176	hgsc.bcm.edu	37	15	89400503	89400503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	AGC1,right_upper_lobe,carcinoma,0,2	AGC1	NM_001135	exon12	c.G4687T	p.G1563W	GAAGTAGGGACTG	.	40	2	47	0	.	0
AIM2	9447	hgsc.bcm.edu	37	1	159038461	159038461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_004833	exon3	c.C293A	p.P98Q	GGCTTTGGTTTTG	.	105	5	67	0	.	.
KCNAB1	7881	hgsc.bcm.edu	37	3	156175301	156175301	+	Silent	SNP	C	C	A	rs146234419	alternate_allele	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	KCNAB1_ENST00000490337,NS,carcinoma,+2,3	KCNAB1_ENST00000490337	NM_172160	exon4	c.C417A	p.A139A	TACTGCCGAAGTC	.	36	2	49	0	.	+2
CASP8	841	hgsc.bcm.edu	37	2	202149565	202149565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	CASP8_ENST00000358485,NS,carcinoma,0,3	CASP8_ENST00000358485	NM_001080125	exon8	c.C1006A	p.L336I	GAAGAGCTTCATT	.	34	2	24	0	.	0
C1QTNF9	338872	hgsc.bcm.edu;broad.mit.edu	37	13	24895265	24895265	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_178540	exon4	c.C361T	p.Q121X	GGGCCTCAGGGGC	.	28	13	37	0	.	.
ORC1	4998	hgsc.bcm.edu	37	1	52840513	52840513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	ORC1,NS,carcinoma,0,1	ORC1	NM_004153	exon16	c.G2360T	p.R787L	CCTGATCGACGGA	.	49	2	54	0	.	0
ARID4B	51742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	235331898	235331898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_016374	exon24	c.T3881C	p.L1294S	TCAGCTAAAGTTA	.	87	12	72	0	.	.
CTNNA2	1496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	80808879	80808879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001164883	exon14	c.G1942T	p.D648Y	GATTATGATGTGC	.	41	4	26	0	.	.
NTRK1	4914	hgsc.bcm.edu	37	1	156844710	156844710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	NTRK1_ENST00000392302,caecum,carcinoma,-2,1	NTRK1_ENST00000392302	NM_002529	exon11	c.G1264T	p.V422L	GTGGCTGTGGGCC	.	41	2	28	0	.	-2
PHKB	5257	hgsc.bcm.edu;bcgsc.ca	37	16	47675545	47675545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_000293	exon16	c.C1550T	p.T517I	TTCAAACTCAAAC	.	74	4	60	0	.	.
C9orf72	203228	hgsc.bcm.edu	37	9	27566901	27566901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	C9orf72,caecum,carcinoma,0,2	C9orf72	NM_018325	exon2	c.G218A	p.R73Q	GCATTTCGAAGGA	.	37	2	54	0	.	0
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	2976042	2976042	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_033225	exon42	c.C6309G	p.Y2103X	CACGCTGTAATCC	.	72	14	80	0	.	.
LRRFIP1	9208	hgsc.bcm.edu	37	2	238683054	238683054	+	Silent	SNP	A	A	G	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001137550	exon23	c.A1761G	p.A587A	AAATGCAGAAAAA	.	87	4	90	0	.	.
TUBBP5	643224	hgsc.bcm.edu	37	9	141070915	141070915	+	RNA	SNP	C	C	G	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	ENSG00000254381,NS,carcinoma,0,6	ENSG00000254381	.	.	.	.	AGACACCGTGGTG	.	84	4	84	1	.	0
CCDC144C	348254	hgsc.bcm.edu	37	17	20242721	20242721	+	RNA	SNP	A	A	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	.	.	.	.	TTTAAAACATGTA	.	331	110	259	0	.	.
CHIA	27159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	111854340	111854340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_201653	exon3	c.G55T	p.G19C	CAGCTCGGTAAGT	.	54	19	42	0	.	.
ATP2B1	490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	90028837	90028837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001001323	exon3	c.G598A	p.G200S	CCTGACCACCCCT	.	37	10	31	0	.	.
GRM7	2917	hgsc.bcm.edu	37	3	7494394	7494394	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	GRM7,rectum,carcinoma,0,1	GRM7	NM_000844	exon6	c.G1275T	p.M425I	CCACATGAACAAG	.	40	2	58	0	.	0
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651412	1651412	+	Silent	SNP	G	G	C	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	KRTAP5-5,NS,carcinoma,+1,1	KRTAP5-5	NM_001001480	exon1	c.G342C	p.G114G	TGGGGGGTCCAAG	.	43	5	39	1	.	+1
TULP1	7287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	35479510	35479510	+	Silent	SNP	G	G	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_003322	exon4	c.C264T	p.Y88Y	CCTGGCGTAGACC	.	55	18	45	0	.	.
WSCD1	23302	hgsc.bcm.edu	37	17	6023684	6023684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	WSCD1,NS,carcinoma,0,1	WSCD1	NM_015253	exon9	c.C1431A	p.D477E	CCTGGACTGGCTC	.	55	3	34	0	.	0
ALMS1	7840	hgsc.bcm.edu	37	2	73613037	73613037	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_015120	exon1	c.A41T	p.E14V	TGGAGGAGGAGGA	.	24	6	12	0	.	.
MED27	9442	hgsc.bcm.edu	37	9	134889833	134889833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001253881	exon3	c.G370A	p.A124T	CAGATGCTAGTCC	.	38	3	56	0	.	.
FARS2	10667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	5545474	5545474	+	Silent	SNP	C	C	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_006567	exon5	c.C966T	p.I322I	CATGATCCTCTAC	.	61	26	72	0	.	.
ABCA12	26154	hgsc.bcm.edu	37	2	215865498	215865498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	ABCA12,colon,carcinoma,0,1	ABCA12	NM_173076	exon22	c.C3110A	p.T1037N	CTTCCAGTTTGCA	.	57	3	30	0	.	0
DAXX	1616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	33289677	33289677	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001141970	exon2	c.T62A	p.V21E	TCCAGCACGATGA	.	15	8	15	0	.	.
CDH9	1007	hgsc.bcm.edu	37	5	26890641	26890641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_016279	exon8	c.G1286A	p.R429H	AAAATACGGTCCA	.	94	4	93	0	.	.
TUBGCP2	10844	hgsc.bcm.edu	37	10	135107110	135107110	+	Silent	SNP	C	C	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	TUBGCP2,colon,carcinoma,0,1	TUBGCP2	NM_001256617	exon7	c.G864A	p.V288V	CCTGTGCACCAGC	.	81	3	79	0	.	0
SMG8	55181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	57288383	57288383	+	Missense_Mutation	SNP	A	A	C	rs374585441	alternate_allele	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_018149	exon1	c.A971C	p.N324T	GCATCAACTGCCT	.	58	22	60	0	.	.
NT5C2	22978	hgsc.bcm.edu;bcgsc.ca	37	10	104866417	104866417	+	Silent	SNP	C	C	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_012229	exon5	c.G222T	p.V74V	TCTCTCCACAGTA	.	47	4	44	0	.	.
KDR	3791	hgsc.bcm.edu;bcgsc.ca	37	4	55953862	55953862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_002253	exon27	c.C3574A	p.L1192I	GAGAGAGTCCAGA	.	80	5	68	0	.	.
PDE4B	5142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	66713147	66713147	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	PDE4B_ENST00000423207,NS,carcinoma,0,2	PDE4B_ENST00000423207	NM_001037341	exon4	c.G286C	p.D96H	AGCTTTGATGTGG	.	23	6	38	0	.	0
DRD5	1816	hgsc.bcm.edu	37	4	9784882	9784882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	DRD5,NS,carcinoma,0,1	DRD5	NM_000798	exon1	c.A1229G	p.Y410C	CTGCCTACATCCA	.	33	3	37	1	.	0
IARS	3376	hgsc.bcm.edu;bcgsc.ca	37	9	95003186	95003186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_013417	exon30	c.G3235A	p.A1079T	CACAAGCAGGACC	.	44	4	65	0	.	.
NPFFR1	64106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	72025934	72025934	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_022146	exon2	c.T221A	p.M74K	GTATGCATGTGCC	.	31	10	45	0	.	.
TMEM177	80775	hgsc.bcm.edu	37	2	120439254	120439254	+	Silent	SNP	C	C	T	rs150982620	alternate_allele	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	TMEM177,NS,carcinoma,0,1	TMEM177	NM_030577	exon2	c.C825T	p.S275S	ACCCAGCGGGAAC	.	22	2	16	0	.	0
CDKN2A	1029	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	21971108	21971108	+	Missense_Mutation	SNP	C	C	A	rs11552822	bycluster	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	CDKN2A_ENST00000498124,left_upper_lobe,carcinoma,0,35	CDKN2A_ENST00000498124	NM_058195	exon2	c.G293T	p.R98L	CAGCGTCGTGCAC	.	12	7	21	0	.	0
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62292529	62292529	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001620	exon5	c.G9360C	p.M3120I	AACTTTCATGTCA	.	85	31	88	0	.	.
OR6C4	341418	hgsc.bcm.edu	37	12	55945614	55945614	+	Missense_Mutation	SNP	G	G	A	rs375998098		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	OR6C4,colon,carcinoma,0,1	OR6C4	NM_001005494	exon1	c.G604A	p.V202I	TTGGCCGTTGTGA	.	24	2	32	0	.	0
ANTXR1	84168	hgsc.bcm.edu;bcgsc.ca	37	2	69420523	69420523	+	Silent	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_032208	exon17	c.G1410T	p.V470V	GTCTGTGATGCGT	.	56	4	53	0	.	.
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	195512268	195512268	+	Silent	SNP	G	G	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_018406	exon2	c.C6183T	p.D2061D	CGTGGTGTCACCT	.	124	19	148	0	.	.
KIAA2018	205717	hgsc.bcm.edu	37	3	113376107	113376107	+	Silent	SNP	C	C	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	KIAA2018,colon,carcinoma,0,1	KIAA2018	NM_001009899	exon7	c.G4422A	p.Q1474Q	TTGTTGCTGTTGC	.	17	3	18	1	.	0
DDI1	414301	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	103908641	103908641	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001001711	exon1	c.G1091T	p.G364V	CTGAGGGAGAGTT	.	33	4	29	0	.	.
HOXD9	3235	hgsc.bcm.edu;bcgsc.ca	37	2	176988855	176988855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_014213	exon2	c.G1011T	p.R337S	CCGTAGGATGAAA	.	65	4	66	0	.	.
CDX4	1046	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	72674415	72674415	+	Silent	SNP	C	C	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_005193	exon3	c.C849T	p.S283S	AGTCTCCGAATGA	.	316	24	69	0	.	.
C1QL1	10882	hgsc.bcm.edu	37	17	43037583	43037583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	C1QL1,NS,carcinoma,0,2	C1QL1	NM_006688	exon2	c.C750A	p.F250L	GCCAGAGAACGTG	.	41	3	50	0	.	0
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	2968722	2968722	+	Missense_Mutation	SNP	G	G	A	rs375070304		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_002836	exon12	c.G572A	p.R191H	CTTTCCGCTTATC	.	47	17	43	0	.	.
ROCK1P1	727758	hgsc.bcm.edu	37	18	110357	110357	+	RNA	SNP	G	G	C	rs36148800	alternate_allele	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	.	.	.	.	AGTCTTGTCTAGG	.	51	4	26	0	.	.
UBQLN1	29979	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	86297904	86297904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_053067	exon3	c.C410A	p.S137Y	GATGTAGAGTTAC	.	38	4	70	0	.	.
ABCA13	154664	hgsc.bcm.edu	37	7	48327660	48327660	+	Silent	SNP	G	G	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	ABCA13_ENST00000435803,NS,carcinoma,0,2	ABCA13_ENST00000435803	NM_152701	exon20	c.G8940A	p.A2980A	TTTGGCGCAGGAC	.	47	2	35	0	.	0
WHSC1L1	54904	hgsc.bcm.edu	37	8	38157087	38157087	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_023034	exon15	c.C2633A	p.S878X	GGGTCTGAATGGT	.	83	3	100	0	.	.
UNC5B	219699	hgsc.bcm.edu	37	10	73051326	73051326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	UNC5B,colon,carcinoma,0,1	UNC5B	NM_170744	exon10	c.C1432T	p.P478S	CCCTTACCCAGCC	.	64	3	69	0	.	0
DNAH2	146754	hgsc.bcm.edu	37	17	7705318	7705318	+	Silent	SNP	C	C	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	DNAH2,NS,carcinoma,0,1	DNAH2	NM_020877	exon57	c.C8955A	p.L2985L	GGAACTCCTGTCT	.	35	2	26	0	.	0
WDR52	55779	hgsc.bcm.edu	37	3	113063555	113063555	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	WDR52_ENST00000393845,NS,carcinoma,0,1	WDR52_ENST00000393845	NM_001164496	exon23	c.C3070T	p.R1024X	GATCTCGAAATCT	.	48	2	38	0	.	0
MOSPD2	158747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	14936834	14936834	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_152581	exon14	c.C1349A	p.P450Q	GTAAACCAAACAC	.	183	36	222	0	.	.
OLFM4	10562	hgsc.bcm.edu;bcgsc.ca	37	13	53624252	53624252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_006418	exon5	c.G879T	p.L293F	GCCATTGAATACA	.	82	4	87	0	.	.
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	106991412	106991412	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001624	exon9	c.C3755G	p.A1252G	AAGAGGCGACTGG	.	40	22	63	0	.	.
ABCC1	4363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	16180684	16180684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_004996	exon18	c.G2296A	p.V766M	CAGGGCGTGAACC	.	34	8	29	0	.	.
MIR548N	100302152	hgsc.bcm.edu	37	2	179363817	179363817	+	RNA	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	.	.	.	.	TTTTTTGCCAGTT	.	114	7	96	0	.	.
GDI1	2664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153667150	153667150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001493	exon3	c.T193C	p.S65P	CCTGAGTCGATGG	.	41	7	47	0	.	.
PA2G4P4	647033	hgsc.bcm.edu;bcgsc.ca	37	3	156527661	156527661	+	RNA	SNP	C	C	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	.	.	.	.	AGCCTTCTTCTCA	.	49	4	72	0	.	.
DCLK1	9201	hgsc.bcm.edu	37	13	36686146	36686146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	DCLK1_ENST00000255448,NS,carcinoma,0,2	DCLK1_ENST00000255448	NM_004734	exon3	c.G583A	p.V195M	GCTTCACGCCACT	.	30	2	30	0	.	0
ARID1A	8289	broad.mit.edu;bcgsc.ca	37	1	27101384	27101394	+	Frame_Shift_Del	DEL	GGTCCCTCTGC	GGTCCCTCTGC	-	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	ARID1A	NM_006015	exon18	c.4666_4676del	p.1556_1559del	CCATATGGTCCCT	.	25	8	48	0	.	842
FAM72A	729533	broad.mit.edu	37	1	206145504	206145504	+	Missense_Mutation	SNP	T	T	C	rs55683315	bycluster	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	FAM72A,NS,carcinoma,0,1	FAM72A	NM_001123168	exon3	c.T281C	p.L94P	GTCTTCTTTCCTG	.	193	6	162	1	.	9
TBATA	219793	broad.mit.edu	37	10	72541754	72541754	+	Missense_Mutation	SNP	C	C	T	rs200788611		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	C10orf27,NS,carcinoma,-1,2	.	NM_152710	exon4	c.G80A	p.R27H	GGCTTGCGCCCTG	.	41	4	29	0	.	.
OR51I1	390063	broad.mit.edu	37	11	5462013	5462013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	OR51I1	NM_001005288	exon1	c.G732T	p.M244I	GTGTGACATGCAG	.	14	6	14	0	.	66
HERC2P2	0	broad.mit.edu	37	15	23283078	23283078	+	RNA	SNP	G	G	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	.	.	.	.	TTCACCGCCTTTC	.	59	11	41	1	.	.
WASH3P	0	broad.mit.edu	37	15	102506815	102506816	+	RNA	DEL	CC	CC	-	rs113122596		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	WASH3P	.	.	.	.	TCTCCACCTGGAG	.	75	17	69	7	CC|0.500;-|0.500	56
.	728888	broad.mit.edu	37	16	29415043	29415043	+	Silent	SNP	G	G	A	rs62035609	bycluster	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	RP11-231C14.2_ENST00000524087,bladder,carcinoma,0,28	.	.	.	.	.	CTTTACGTGCTGC	.	190	6	119	1	G|0.500;A|0.500	.
.	728741	broad.mit.edu	37	16	28354442	28354442	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	.	.	.	.	AAAGTTTCAGCTG	.	56	20	36	0	.	.
BOD1L1	259282	broad.mit.edu	37	4	13602293	13602293	+	Silent	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_148894	exon10	c.C6231A	p.T2077T	ATTTGTGGTACTG	.	46	3	38	0	.	.
.	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	13339698	13339698	+	RNA	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	.	.	.	.	GAGCCTGGTCTCA	.	79	29	38	0	.	.
GUSBP1	0	broad.mit.edu	37	5	21490969	21490970	+	RNA	DEL	TT	TT	-	rs59673022	alternate_allele	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	.	.	.	.	AAAAAATTAAAAA	.	20	8	5	0	.	.
PKHD1	5314	broad.mit.edu;bcgsc.ca	37	6	51890257	51890257	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	PKHD1	NM_170724	exon32	c.C4351G	p.P1451A	GCAAGGGGTCACC	.	34	10	32	0	.	927
ZNF12	7559	broad.mit.edu	37	7	6731408	6731408	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	ZNF12	NM_016265	exon5	c.1165delA	p.T389fs	AGAAGGTTTTCCC	.	6	2	26	0	.	53
INTS8	55656	broad.mit.edu	37	8	95841228	95841228	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	INTS8	NM_017864	exon5	c.G544T	p.E182X	GAAAAAGAGCTAA	.	37	3	29	0	.	92
GLIS3	169792	broad.mit.edu	37	9	4118102	4118102	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	GLIS3	NM_001042413	exon4	c.1376delC	p.P459fs	GGGGGTGGGGGGC	.	7	2	10	0	.	152
CYTB	4519	broad.mit.edu	37	MT	14783	14783	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	ENST00000361789	exon1	c.T37C	p.L13L	ATAAAATTAATTA	.	733	5	275	0	.	.
HMGB3	3149	broad.mit.edu	37	X	150156360	150156360	+	Silent	SNP	G	G	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	HMGB3	NM_005342	exon5	c.G576A	p.E192E	AGAAGAGGAGGAG	.	32	3	27	0	.	27
NUDT10	170685	broad.mit.edu	37	X	51076024	51076024	+	Silent	SNP	G	G	A	rs2801626		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	NUDT10	NM_153183	exon2	c.G207A	p.E69E	CGAAGAGGCGGGA	.	106	8	89	1	.	28
PNPLA4	8228	broad.mit.edu	37	X	7868821	7868821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	PNPLA4	NM_004650	exon7	c.T668C	p.L223P	GGAAAAAGGGCTT	.	309	4	313	1	.	24
PRICKLE3	4007	broad.mit.edu	37	X	49034449	49034449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	PRICKLE3	NM_006150	exon7	c.C848A	p.A283D	AGTGAAGCTTCAC	.	34	3	36	0	.	59
XIST	0	broad.mit.edu	37	X	73065142	73065142	+	RNA	SNP	A	A	G	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	.	.	.	.	AGGAAAAGGGGCC	.	358	5	64	0	.	.
.	30816	ucsc.edu	37	7	92099233	92099233	+	Missense_Mutation	SNP	G	G	A	rs199552228	bycluster	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	.	.	.	.	TTTCATGTAGTTT	.	31	8	29	1	.	.
PAFAH1B2	5049	ucsc.edu	37	11	117023206	117023206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	PAFAH1B2	NM_001184747	exon2	c.G43A	p.A15T	CATGCAGCAGAAG	.	30	4	18	0	.	19
CIT	11113	ucsc.edu	37	12	120172046	120172046	+	Silent	SNP	G	G	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	CIT	NM_001206999	exon26	c.C3273T	p.V1091V	ACCCAGGACGCTC	.	23	5	24	1	.	535
GPR32	2854	ucsc.edu;bcgsc.ca	37	19	51274851	51274851	+	Missense_Mutation	SNP	A	A	C	rs78840344	bycluster	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	GPR32,NS,carcinoma,0,5	GPR32	NM_001506	exon1	c.A994C	p.T332P	TCTTTGACTTCTG	.	50	8	31	0	.	68
.	441915	bcgsc.ca	37	1	172718039	172718039	+	RNA	SNP	C	A	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	.	.	.	.	AATCTACTTTGGC	.	29	4	24	0	.	.
TANK	10010	bcgsc.ca	37	2	162081140	162081140	+	Splice_Site	SNP	A	T	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	TANK	NM_004180	exon6	c.405-2A>T	.	TTTTTTAGGGGTA	.	225	8	190	1	.	35
LRRC73	221424	bcgsc.ca	37	6	43476117	43476117	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	NM_001012974	exon3	c.C475A	p.P159T	CCTTAGGGGTGAT	.	53	4	54	0	.	.
.	442260	bcgsc.ca	37	6	133319072	133319072	+	RNA	SNP	G	A	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	.	.	.	.	TTGTGTGTATGTG	.	27	16	35	0	.	.
TSNARE1	203062	bcgsc.ca	37	8	143396383	143396383	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	TSNARE1	NM_145003	exon8	c.G1055T	p.C352F	CCATAGCACTGAA	.	19	3	22	0	.	59
GLIS3	169792	bcgsc.ca	37	9	4286193	4286193	+	Missense_Mutation	SNP	C	T	T	rs200195201	bycluster	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	GLIS3	NM_001042413	exon2	c.G233A	p.R78H	TGGATGCGGCTCT	.	28	4	27	0	C|0.999;T|0.001	152
.	0	bcgsc.ca	37	9	107485385	107485385	+	RNA	SNP	C	A	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	.	.	.	.	TTCATGCACATGA	.	36	4	39	0	.	.
GJD4	219770	bcgsc.ca	37	10	35897268	35897268	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	GJD4	NM_153368	exon2	c.G827A	p.G276D	GGGCTGGCAGCCC	.	55	4	50	0	.	38
MUC6	4588	bcgsc.ca	37	11	1017363	1017363	+	Missense_Mutation	SNP	C	G	G	rs199783663		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	MUC6	NM_005961	exon31	c.G5438C	p.G1813A	ACAGGACCTGTGG	.	163	9	115	1	.	408
MUC2	4583	bcgsc.ca	37	11	1092615	1092615	+	Silent	SNP	C	T	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	MUC2	NM_002457	exon30	c.C4434T	p.S1478S	TCCCAGCCCTCCA	.	250	19	211	9	.	614
MUC2	4583	bcgsc.ca	37	11	1093050	1093050	+	Silent	SNP	C	A	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	MUC2	NM_002457	exon30	c.C4869A	p.G1623G	CACTGGCACACAG	.	284	16	230	5	.	614
MUC2	4583	bcgsc.ca	37	11	1093061	1093061	+	Missense_Mutation	SNP	C	T	T	rs199518058		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	MUC2	NM_002457	exon30	c.C4880T	p.P1627L	AGACCCCAACCCC	.	272	18	225	4	.	614
MUC2	4583	bcgsc.ca	37	11	1093223	1093223	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	MUC2	NM_002457	exon30	c.C5042A	p.T1681N	CCACCACCACTAC	.	244	9	150	1	.	614
ESYT1	23344	bcgsc.ca	37	12	56524397	56524397	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	ESYT1	NM_015292	exon2	c.G422T	p.W141L	CTGAATGGCTCAA	.	83	4	54	0	.	84
SLC17A8	246213	bcgsc.ca	37	12	100811849	100811849	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	SLC17A8	NM_139319	exon11	c.G1340A	p.S447N	ATGCCAGCATTCT	.	64	4	46	0	.	89
.	283523	bcgsc.ca	37	13	19255796	19255796	+	RNA	SNP	T	C	C	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	.	.	.	.	GACAGATGGAGGA	.	114	16	122	0	.	.
.	254398	bcgsc.ca	37	14	20156938	20156938	+	RNA	SNP	C	G	G	rs199925830	bycluster	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	.	.	.	.	ATTACTCTATCCT	.	29	8	18	0	.	.
SPRED1	161742	bcgsc.ca	37	15	38643613	38643613	+	Missense_Mutation	SNP	A	C	C	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	SPRED1	NM_152594	exon7	c.A1083C	p.R361S	TAAAAGATGCATA	.	41	13	55	0	.	51
.	802	bcgsc.ca	37	X	94754909	94754909	+	RNA	SNP	T	C	C	novel		TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	.	.	.	.	.	.	GAACTATGTCACG	.	25	12	19	0	.	.
OR8K3	219473	ucsc.edu	37	11	56086147	56086147	+	Missense_Mutation	SNP	G	G	A	rs960193	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes;alternate_allele	TCGA-ZD-A8I3-01A-11D-A417-09	TCGA-ZD-A8I3-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b5635673-eac4-4e25-ba71-0a09611b221f	928e9a57-b250-4873-94b9-50702b7907c8	OR8K3,NS,carcinoma,+1,1	OR8K3	NM_001005202	exon1	c.T365A	p.L122H	ACGACCTCTATGT	.	32	16	36	0	G|0.721;T|0.279	92