Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21225533	21225533	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_000384	exon29	c.12762delT	p.P4254fs	TCGAAAGGAAGTG	.	52	12	45	0	.	.
RUFY1	80230	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	179007944	179007948	+	Splice_Site	DEL	AAAGG	AAAGG	-	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	AAAGG	AAAGG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	.	.	.	.	CTTTTAAAAGGCA	.	108	11	72	0	.	.
BRCA2	675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	32913032	32913032	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	BRCA2,NS,carcinoma,0,1	BRCA2	NM_000059	exon11	c.G4540C	p.E1514Q	CGTGATGAAAAGA	.	32	5	58	0	.	0
TLR3	7098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187004484	187004484	+	Silent	SNP	C	C	T	rs147873871		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_003265	exon4	c.C1644T	p.H548H	GAAACACGCAAAC	.	25	9	42	0	0.000	.
ANGPT4	51378	hgsc.bcm.edu;ucsc.edu	37	20	870928	870928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_015985	exon2	c.G393A	p.M131I	CTCTAGCATGGGG	.	35	4	21	0	.	.
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	21526190	21526190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_198129	exon70	c.C9293T	p.S3098F	GAAACTCCACCAT	.	36	7	43	0	.	.
SOX2	6657	hgsc.bcm.edu	37	3	181432147	181432147	+	RNA	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	.	.	.	.	ATAACAGGTACAT	.	65	2	46	0	.	.
CHAMP1	283489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	115089740	115089740	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001164144	exon3	c.G423C	p.L141F	AGTTTTGTCTCCA	.	41	5	38	0	.	.
ALMS1	7840	hgsc.bcm.edu	37	2	73676231	73676231	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	ALMS1,colon,carcinoma,0,1	ALMS1	NM_015120	exon8	c.G2574T	p.A858A	CTCTGCGTCCTCT	.	40	3	33	0	.	0
CCNH	902	hgsc.bcm.edu	37	5	86703897	86703897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	CCNH,NS,carcinoma,0,1	CCNH	NM_001239	exon4	c.G421A	p.E141K	TCTGTTCAAGTGC	.	42	2	49	0	.	0
OR2L8	391190	hgsc.bcm.edu	37	1	248112794	248112794	+	Missense_Mutation	SNP	G	G	C	rs200574966		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	OR2L8,NS,carcinoma,0,2	OR2L8	NM_001001963	exon1	c.G635C	p.G212A	TCATTGGTATTTC	.	86	5	62	1	.	0
CACNA1F	778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	49062181	49062181	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_005183	exon47	c.C5598T	p.G1866G	GGATCTGCCGAGG	.	23	14	30	0	.	.
PCNXL3	399909	hgsc.bcm.edu	37	11	65402529	65402529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	PCNXL3_ENST00000355703,NS,carcinoma,0,1	PCNXL3_ENST00000355703	NM_032223	exon30	c.G4891T	p.D1631Y	TTTGCCGACATGG	.	13	2	28	0	.	0
ZNF100	163227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	21910039	21910039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_173531	exon5	c.A1075G	p.T359A	TAAGGGTTGAGGA	.	53	8	63	0	.	.
MYBPC1	4604	hgsc.bcm.edu	37	12	102061631	102061631	+	Silent	SNP	C	C	T	rs371105415		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	MYBPC1_ENST00000360610,NS,adenocarcinoma,0,2	MYBPC1_ENST00000360610	NM_206819	exon23	c.C2478T	p.S826S	TGCCAGCGAGCCC	.	48	3	63	0	.	0
CTNNBL1	56259	hgsc.bcm.edu	37	20	36396410	36396410	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	CTNNBL1,NS,carcinoma,0,1	CTNNBL1	NM_030877	exon7	c.G714A	p.Q238Q	TGCCCAGCAGGGT	.	43	3	37	0	.	0
PPP1CB	5500	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	29006824	29006824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_206876	exon6	c.C572T	p.P191L	TGAGACCTACTGA	.	74	6	73	0	.	.
SIGLEC17P	284367	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	51670830	51670830	+	RNA	SNP	C	C	G	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	.	.	.	.	TCTGTGCATCTTT	.	16	5	27	0	.	.
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	179411745	179411745	+	Missense_Mutation	SNP	C	C	T	rs375657115		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001267550	exon340	c.G94507A	p.A31503T	TTTGAGCCATTAT	.	25	4	18	0	.	.
THTPA	79178	hgsc.bcm.edu	37	14	24025980	24025980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	THTPA,NS,carcinoma,0,1	THTPA	NM_001256321	exon2	c.T14C	p.L5S	AGGGCTTGATTGA	.	10	2	9	1	.	0
SLC17A9	63910	hgsc.bcm.edu	37	20	61594022	61594022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	SLC17A9,NS,carcinoma,0,1	SLC17A9	NM_022082	exon5	c.G544T	p.G182C	TGGTACGGCTGGC	.	38	2	53	0	.	0
WDR92	116143	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	68371718	68371718	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001256476	exon3	c.T414A	p.D138E	CTCACCATCTCGG	.	52	14	37	0	.	.
CLEC2L	154790	hgsc.bcm.edu	37	7	139225079	139225079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001080511	exon3	c.G278A	p.C93Y	AGGGCTGCATCAA	.	66	4	34	0	.	.
PVR	5817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45162133	45162133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_006505	exon6	c.G1115T	p.R372L	GTTCCCGTGAGGT	.	29	12	34	0	.	.
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6647166	6647166	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_003737	exon17	c.T6716A	p.I2239N	GCCCAGATCTCAC	.	38	9	27	0	.	.
VPS39	23339	hgsc.bcm.edu	37	15	42465949	42465949	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	VPS39,NS,carcinoma,0,2	VPS39	NM_015289	exon11	c.C1062A	p.S354S	CTGCATGGACTCA	.	21	2	35	0	.	0
KRT81	3887	hgsc.bcm.edu	37	12	52680993	52680993	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	KRT81,NS,carcinoma,0,2	KRT81	NM_002281	exon7	c.G1140A	p.Q380Q	CATGTCCTGCTTG	.	21	2	31	0	.	0
ZNF431	170959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	21350428	21350428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	ZNF431,NS,carcinoma,0,1	ZNF431	NM_133473	exon4	c.C278T	p.P93L	AAGAGCCCTGGAA	.	72	10	66	0	.	0
CTNNA2	1496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	80816537	80816537	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	CTNNA2_ENST00000466387,colon,carcinoma,0,1	CTNNA2_ENST00000466387	NM_001164883	exon15	c.G2116C	p.D706H	TGGGACGACAGCG	.	34	9	21	0	.	0
LINC00619	414260	hgsc.bcm.edu	37	10	44341076	44341076	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	.	.	.	.	CTCATTGATTATT	.	48	4	27	0	.	.
PLA2G4E	123745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	42276152	42276152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001206670	exon20	c.G2407A	p.E803K	CCAGCTCCTCAGG	.	21	6	14	0	.	.
ITGB6	3694	hgsc.bcm.edu;broad.mit.edu	37	2	160964274	160964274	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_000888	exon14	c.C2184T	p.C728C	CCAGATGCACAGT	.	52	4	45	0	.	.
PABPC3	5042	hgsc.bcm.edu	37	13	25671267	25671267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	PABPC3,NS,carcinoma,0,1	PABPC3	NM_030979	exon1	c.C931T	p.R311W	CGTCTCCGGAAAG	.	37	2	65	0	.	0
RYR3	6263	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	33923462	33923462	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001243996	exon23	c.G2835T	p.E945D	TGCTGAGGAGGAT	.	35	4	27	0	.	.
SORBS1	10580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	97106174	97106174	+	Silent	SNP	A	A	C	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001034955	exon24	c.T2484G	p.A828A	TGTCTGAGCTTTA	.	39	14	31	0	.	.
LTBP1	4052	hgsc.bcm.edu;bcgsc.ca	37	2	33540337	33540337	+	Splice_Site	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_206943	exon24	c.3730+1G>T	.	GTGAAGGTAAGAT	.	85	4	61	0	.	.
KIF4B	285643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	154396256	154396256	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001099293	exon1	c.A2837C	p.K946T	CAGAGAAGCAGTT	.	28	6	32	0	.	.
SRGAP1	57522	hgsc.bcm.edu	37	12	64505698	64505698	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_020762	exon17	c.T2076C	p.T692T	TGAGACTATTTTC	.	39	3	52	0	.	.
KCNMB2	10242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	178560605	178560605	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_005832	exon6	c.G588A	p.L196L	CGTGCTGTTCCAT	.	45	18	38	0	.	.
CSMD1	64478	hgsc.bcm.edu	37	8	3265726	3265726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	CSMD1_ENST00000537824,NS,carcinoma,0,2	CSMD1_ENST00000537824	NM_033225	exon14	c.C1766A	p.T589K	GATGCCGTAAAGT	.	35	2	43	0	.	0
CLHC1	130162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55439844	55439844	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_152385	exon5	c.G464C	p.C155S	AAAGTACAATATT	.	55	12	45	0	.	.
DOCK8	81704	hgsc.bcm.edu	37	9	428485	428485	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	DOCK8_ENST00000453981,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,2	DOCK8_ENST00000453981	NM_203447	exon35	c.C4462G	p.L1488V	CGTGCTCTCATCG	.	12	2	19	0	.	0
TM9SF3	56889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	98292847	98292847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_020123	exon10	c.G1286A	p.R429H	TTGACACGACAAG	.	81	20	73	0	.	.
CFDP1	10428	hgsc.bcm.edu	37	16	75339062	75339062	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	CFDP1,NS,carcinoma,0,1	CFDP1	NM_006324	exon6	c.C669A	p.G223G	GCTCATGCCACTT	.	18	2	23	0	.	0
PCDHB5	26167	hgsc.bcm.edu	37	5	140516886	140516886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	PCDHB5,NS,carcinoma,0,2	PCDHB5	NM_015669	exon1	c.C1870T	p.R624C	GAGGTGCGCACCG	.	65	4	68	0	.	0
CACNA1E	777	hgsc.bcm.edu	37	1	181727219	181727219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	CACNA1E_ENST00000367573,colon,carcinoma,0,2	CACNA1E_ENST00000367573	NM_001205293	exon31	c.C4466T	p.A1489V	TGATCGCCTTGAA	.	34	2	28	0	.	0
ADRBK1	156	hgsc.bcm.edu	37	11	67049787	67049787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001619	exon12	c.G1003T	p.D335Y	ATCTCGGACCTGG	.	71	4	57	0	.	.
ZNF14	7561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19822519	19822519	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_021030	exon4	c.T1571A	p.I524N	GTGTGAATTTTTT	.	40	12	37	0	.	.
SYT10	341359	hgsc.bcm.edu;bcgsc.ca	37	12	33579333	33579333	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_198992	exon2	c.C249T	p.C83C	TTTCCAGCATGGC	.	56	4	52	0	.	.
OLFM3	118427	hgsc.bcm.edu	37	1	102269877	102269877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	OLFM3_ENST00000338858,caecum,carcinoma,0,2	OLFM3_ENST00000338858	NM_058170	exon6	c.G1294A	p.A432T	AGAGAGCTCGATC	.	24	2	36	0	.	0
PDCD2L	84306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	34916999	34916999	+	Missense_Mutation	SNP	G	G	A	rs372339509		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_032346	exon7	c.G1051A	p.D351N	CAAGAAGACCCAG	.	84	16	73	0	.	.
ST6GALNAC3	256435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	76540564	76540564	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001160011	exon1	c.C13G	p.L5V	TGCATCCTGAAGG	.	44	7	49	0	.	.
MIR548AI	100616347	hgsc.bcm.edu	37	14	30068808	30068808	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	.	.	.	.	AACAGTGATAACA	.	37	13	31	0	.	.
GRIA2	2891	hgsc.bcm.edu	37	4	158257613	158257613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	GRIA2_ENST00000264426,colon,carcinoma,0,3	GRIA2_ENST00000264426	NM_000826	exon11	c.G1558T	p.G520W	AGCCTCGGGATAT	.	67	3	65	0	.	0
C22orf42	150297	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	32555003	32555003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001010859	exon1	c.C200A	p.P67Q	GTCTTCGGGAGGC	.	28	4	33	0	.	.
MAP4K4	9448	hgsc.bcm.edu	37	2	102490597	102490597	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	MAP4K4,NS,carcinoma,0,2	MAP4K4	NM_145686	exon24	c.C2791A	p.R931R	CCTACCCGGAAAG	.	50	2	44	0	.	0
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	181767937	181767937	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001205293	exon48	c.G6909A	p.L2303L	CAACCTGCTAAGT	.	67	7	33	0	.	.
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	52651334	52651334	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_018313	exon15	c.G1762T	p.E588X	TGTCTTCTATCAT	.	25	6	49	0	.	.
CDC7	8317	hgsc.bcm.edu	37	1	91967356	91967356	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	CDC7,NS,carcinoma,0,4	CDC7	NM_001134419	exon2	c.T83A	p.L28X	GCTCTTTAAAAAA	.	48	3	30	1	.	0
OR4D2	124538	hgsc.bcm.edu	37	17	56247070	56247070	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	OR4D2,NS,carcinoma,0,1	OR4D2	NM_001004707	exon1	c.G54A	p.S18S	GCTCTCGCAGACT	.	47	2	40	0	.	0
ZNF543	125919	hgsc.bcm.edu	37	19	57840047	57840047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	ZNF543,colon,carcinoma,0,1	ZNF543	NM_213598	exon4	c.G1217A	p.R406H	TCAACCGTAGGTC	.	46	2	35	0	.	0
ZNF534	147658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52941195	52941195	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001143939	exon4	c.A521T	p.N174I	TTTTTAATAACTA	.	28	6	29	0	.	.
THAP4	51078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	242572711	242572711	+	Silent	SNP	T	T	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_015963	exon2	c.A861T	p.S287S	AAGTGATGAGCTG	.	19	5	7	0	.	.
BCAN	63827	hgsc.bcm.edu	37	1	156616887	156616887	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	BCAN,NS,carcinoma,0,1	BCAN	NM_198427	exon3	c.C386G	p.P129R	TGCGCCCCAACGA	.	37	2	19	0	.	0
EML5	161436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	89124692	89124692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_183387	exon26	c.C3716T	p.T1239I	ACATGTGTACTAT	.	71	14	60	0	.	.
FAM208A	23272	hgsc.bcm.edu	37	3	56667432	56667432	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	FAM208A,NS,carcinoma,0,2	FAM208A	NM_001112736	exon18	c.C3387T	p.N1129N	TTTATTGTTGAAG	.	23	2	21	0	.	0
MYH2	4620	hgsc.bcm.edu	37	17	10426863	10426863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_017534	exon37	c.C5422A	p.Q1808K	CCAGCTGCTCAGC	.	46	4	50	0	.	.
RMDN3	55177	hgsc.bcm.edu	37	15	41030190	41030190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	FAM82A2,NS,carcinoma,0,1	FAM82A2	NM_018145	exon9	c.C1098A	p.H366Q	AAGAAAGTGAGCC	.	34	3	36	0	.	0
WDR92	116143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	68371715	68371715	+	Splice_Site	SNP	A	A	C	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_138458	exon4	c.415+2T>G	.	GGACTCACCATCT	.	50	14	35	0	.	.
HELQ	113510	hgsc.bcm.edu	37	4	84374566	84374566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	HELQ,NS,carcinoma,0,1	HELQ	NM_133636	exon2	c.C830T	p.A277V	GCCTTCGCATTTC	.	72	3	71	0	.	0
OTOF	9381	hgsc.bcm.edu;ucsc.edu	37	2	26712145	26712145	+	Missense_Mutation	SNP	G	G	T	rs146051471	alternate_allele	TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_194248	exon11	c.C979A	p.L327M	GCAGCAGGTTCTT	.	16	4	14	0	.	.
CAMLG	819	hgsc.bcm.edu	37	5	134074424	134074424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	CAMLG,colon,carcinoma,0,1	CAMLG	NM_001745	exon1	c.G114T	p.M38I	GCTCATGAACTCG	.	49	2	29	0	.	0
CSE1L	1434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	47683047	47683047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001256135	exon5	c.G476A	p.R159K	TTAAAAGGTATTG	.	49	20	32	0	.	.
DDR2	4921	hgsc.bcm.edu	37	1	162737043	162737043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	DDR2_ENST00000367922,NS,carcinoma,0,2	DDR2_ENST00000367922	NM_001014796	exon12	c.G1187A	p.S396N	ATGACAGCAACAC	.	43	2	23	0	.	0
MIR4255	100422898	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	37627229	37627229	+	RNA	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	.	.	.	.	GAGGCAGCATCAT	.	39	4	34	0	.	.
DHX9	1660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	182846025	182846025	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001357	exon19	c.A2185G	p.I729V	TATGTCATTGACT	.	89	36	31	0	.	.
CELF4	56853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	34853025	34853025	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_020180	exon7	c.C903T	p.A301A	GTTGAGGGCCGCC	.	45	15	45	0	.	.
PRPF38B	55119	hgsc.bcm.edu	37	1	109238706	109238706	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	PRPF38B,NS,carcinoma,0,1	PRPF38B	NM_018061	exon3	c.T387C	p.F129F	AGCATTTTGCCTG	.	46	2	47	0	.	0
LRRC52	440699	hgsc.bcm.edu;broad.mit.edu	37	1	165513993	165513993	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001005214	exon1	c.T460C	p.Y154H	TTGAGGTACCTGG	.	78	4	43	0	.	.
NT5DC3	51559	hgsc.bcm.edu	37	12	104171793	104171793	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001031701	exon14	c.C1461A	p.T487T	GAAGTAGGTTGGG	.	56	4	47	0	.	.
EPN2	22905	hgsc.bcm.edu	37	17	19232056	19232056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	EPN2,NS,carcinoma,0,1	EPN2	NM_014964	exon8	c.G1180T	p.G394W	CCATGGGGGGTGC	.	67	3	41	0	.	0
FERD3L	222894	hgsc.bcm.edu	37	7	19184746	19184746	+	Silent	SNP	C	C	T	rs199985178		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.,2	.	NM_152898	exon1	c.G240A	p.E80E	GCGCTCCTCTTCC	.	17	0	14	1	.	63
MEF2A	4205	hgsc.bcm.edu	37	15	100211761	100211761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	MEF2A_ENST00000354410,NS,carcinoma,0,3	MEF2A_ENST00000354410	NM_005587	exon5	c.C295T	p.P99S	GACAGCCCAGACC	.	90	4	80	0	.	0
PREPL	9581	hgsc.bcm.edu;bcgsc.ca	37	2	44550432	44550432	+	Missense_Mutation	SNP	C	C	T	rs375292548	alternate_allele	TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001171603	exon12	c.G1865A	p.R622H	CAGTAACGTTTTA	.	60	4	63	0	.	.
MYBL2	4605	hgsc.bcm.edu;bcgsc.ca	37	20	42311453	42311453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_002466	exon4	c.G206T	p.C69F	AGCAATGCCAGTA	.	72	4	45	0	.	.
APOBR	55911	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	28507458	28507458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_018690	exon2	c.G1096A	p.A366T	GGGACAGCCTCAG	.	18	4	23	0	.	.
KRTAP5-4	387267	hgsc.bcm.edu	37	11	1643279	1643279	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	KRTAP5-4,NS,carcinoma,0,1	KRTAP5-4	NM_001012709	exon1	c.G45A	p.G15G	ACAGCCCCCACAG	.	102	5	84	0	.	0
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	30723183	30723183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_032457	exon1	c.C139T	p.R47C	GACGTCCGCATCG	.	32	5	26	0	.	.
KTN1	3895	hgsc.bcm.edu	37	14	56079169	56079169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	KTN1_ENST00000416613,colon,carcinoma,0,1	KTN1_ENST00000416613	NM_004986	exon2	c.G403T	p.A135S	AGTGACGCATCAA	.	95	4	89	0	.	0
PSPC1	55269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	20277436	20277436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001042414	exon10	c.G1451A	p.G484D	TCAGAACCTGTTC	.	120	18	151	0	.	.
SPTBN2	6712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	66463945	66463945	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_006946	exon20	c.C4081T	p.L1361L	TGTGCAGGTCTCT	.	18	9	17	0	.	.
CCDC62	84660	hgsc.bcm.edu	37	12	123262119	123262119	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	CCDC62_ENST00000253079,NS,carcinoma,0,2	CCDC62_ENST00000253079	NM_201435	exon2	c.C118T	p.R40X	AAAGATCGAGATA	.	28	2	31	0	.	0
MLL3	58508	hgsc.bcm.edu	37	7	151921114	151921114	+	Nonsense_Mutation	SNP	A	A	T	rs4024337		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	MLL3_ENST00000355193,NS,carcinoma,0,10	MLL3_ENST00000355193	NM_170606	exon20	c.T3309A	p.C1103X	TTGTCTACATTGC	.	74	3	93	1	.	0
HIVEP2	3097	hgsc.bcm.edu	37	6	143091902	143091902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	HIVEP2,NS,carcinoma,0,1	HIVEP2	NM_006734	exon5	c.C3974A	p.S1325Y	TGCAAAGACCCAG	.	12	2	24	0	.	0
FBXW7	55294	hgsc.bcm.edu	37	4	153250882	153250882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	FBXW7_NM_018315_2,NS,carcinoma,-1,5	FBXW7_NM_018315_2	NM_033632	exon8	c.G1178A	p.R393Q	ACTATTCGGTTAC	.	44	2	47	0	.	-1
WDR11	55717	hgsc.bcm.edu	37	10	122661797	122661797	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	WDR11,NS,carcinoma,0,1	WDR11	NM_018117	exon22	c.G2716T	p.E906X	GATCCAGAATTCA	.	59	3	79	1	.	0
LMNB1	4001	hgsc.bcm.edu	37	5	126140499	126140499	+	Missense_Mutation	SNP	G	G	T	rs373303194	alternate_allele	TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	LMNB1,NS,carcinoma,0,1	LMNB1	NM_005573	exon2	c.G391T	p.A131S	AATGGCGCCCAGA	.	27	2	38	0	.	0
B4GALNT3	283358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	665927	665927	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_173593	exon15	c.A2275G	p.N759D	CCACACAACCGTA	.	41	10	48	0	.	.
WNK2	65268	hgsc.bcm.edu;bcgsc.ca	37	9	96070761	96070761	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_006648	exon27	c.G6411T	p.V2137V	GACGGTGGGGGCC	.	31	4	28	0	.	.
TECPR1	25851	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	97852437	97852437	+	Silent	SNP	G	G	C	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.,1	.	NM_015395	exon21	c.C2793G	p.P931P	GGCGATGGGGGGC	.	31	13	25	0	.	77
FPR1	2357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52249678	52249678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001193306	exon3	c.G570T	p.R190S	ATTTATCCTCTCT	.	44	13	36	0	.	.
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	114282026	114282026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001148	exon39	c.G10729A	p.A3577T	TATATTGCTGATC	.	29	6	30	0	.	.
BIRC2	329	hgsc.bcm.edu	37	11	102221671	102221671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	BIRC2,NS,carcinoma,0,1	BIRC2	NM_001256163	exon3	c.C992A	p.P331Q	GGTTTCCAAGGTA	.	50	2	60	0	.	0
ELF3	1999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201984393	201984393	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001114309	exon9	c.A1058C	p.K353T	TCTACAAGTTTGG	.	117	25	56	0	.	.
EEA1	8411	hgsc.bcm.edu	37	12	93226362	93226362	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_003566	exon11	c.G1180T	p.E394X	TAAACTCCGCCTT	.	80	4	81	0	.	.
HUNK	30811	hgsc.bcm.edu	37	21	33362484	33362484	+	Missense_Mutation	SNP	G	G	T	rs367545209	alternate_allele	TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	HUNK,NS,carcinoma,0,1	HUNK	NM_014586	exon9	c.G1300T	p.V434L	CATGCCGTGCAGG	.	33	2	35	0	.	0
MIA	8190	hgsc.bcm.edu	37	19	41281791	41281791	+	Splice_Site	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001202553	exon3	c.261+1G>T	.	GGCAGCGTGAGTC	.	63	4	77	0	.	.
MROH9	80133	hgsc.bcm.edu	37	1	170934396	170934396	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	C1orf129_ENST00000367759,NS,carcinoma,0,2	C1orf129_ENST00000367759	NM_025063	exon7	c.C480T	p.Y160Y	AAAATACGTAAGT	.	68	3	39	0	.	0
NPM1	4869	hgsc.bcm.edu	37	5	170819801	170819801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	NPM1_ENST00000393820,NS,carcinoma,0,2	NPM1_ENST00000393820	NM_199185	exon5	c.G440T	p.G147V	CTGGAGGTGGTAG	.	53	3	44	0	.	0
KIF19	124602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72341086	72341086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_153209	exon7	c.G769A	p.A257T	GAGCGCGCCTCGC	.	37	7	21	0	.	.
FERMT1	55612	hgsc.bcm.edu;broad.mit.edu	37	20	6093271	6093271	+	Splice_Site	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	FERMT1_ENST00000339538,NS,adenocarcinoma,0,2	FERMT1_ENST00000339538	NM_017671	exon5	c.386-1G>A	.	TAATATCTAGAAA	.	43	4	52	0	.	0
GATAD2A	54815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19576284	19576284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_017660	exon2	c.G130A	p.G44R	ACTGACGGAGACA	.	45	13	42	0	.	.
DAPK1	1612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	90254352	90254352	+	Missense_Mutation	SNP	C	C	G	rs369801129		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_004938	exon5	c.C507G	p.D169E	AATTGACTTTGGA	.	61	9	62	0	.	.
ISY1	57461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	128853021	128853021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001199469	exon10	c.G625A	p.E209K	ACTTTTCCACTAA	.	32	8	22	0	.	.
SDK1	221935	hgsc.bcm.edu	37	7	3678685	3678685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	SDK1,colon,carcinoma,0,1	SDK1	NM_152744	exon3	c.G508A	p.V170M	CGCTGCGTGGTGC	.	35	2	28	0	.	0
ABCC11	85320	hgsc.bcm.edu	37	16	48249190	48249190	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	ABCC11,right_upper_lobe,carcinoma,0,1	ABCC11	NM_033151	exon7	c.C1017A	p.I339I	CACACGGATGCGC	.	23	2	24	0	.	0
MINA	84864	hgsc.bcm.edu	37	3	97668828	97668828	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001042533	exon7	c.G920T	p.R307L	CTTAATCGTCTTG	.	52	4	24	0	.	.
CNTN5	53942	hgsc.bcm.edu	37	11	100095501	100095501	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	CNTN5_ENST00000524871,NS,carcinoma,0,2	CNTN5_ENST00000524871	NM_001243270	exon15	c.C1962A	p.T654T	ACAGACCACAGCA	.	20	2	18	0	.	0
DMXL2	23312	hgsc.bcm.edu	37	15	51780309	51780309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001174116	exon22	c.C5059A	p.H1687N	CATCATGCTGTGA	.	65	4	59	0	.	.
ANGEL1	23357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	77274347	77274347	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_015305	exon3	c.A794G	p.Y265C	TGTAGATAGAGCT	.	23	5	32	0	.	.
ZNF716	441234	hgsc.bcm.edu;bcgsc.ca	37	7	57528453	57528453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	ZNF716_ENST00000420713,NS,carcinoma,0,2	ZNF716_ENST00000420713	NM_001159279	exon4	c.G286T	p.D96Y	ACCCAAGACCTTC	.	78	4	54	0	.	0
TRERF1	55809	hgsc.bcm.edu	37	6	42196196	42196196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	TRERF1,colon,carcinoma,+1,2	TRERF1	NM_033502	exon18	c.G3490A	p.D1164N	CGTCGTCGTCGAG	.	30	3	18	0	.	+1
DHRS13	147015	hgsc.bcm.edu	37	17	27228176	27228176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	DHRS13,NS,carcinoma,0,1	DHRS13	NM_144683	exon4	c.G514A	p.A172T	AGTGGGCAGCTGA	.	29	2	32	0	.	0
ARID1B	57492	hgsc.bcm.edu	37	6	157099423	157099423	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	ARID1B_ENST00000346085,NS,carcinoma,0,2	ARID1B_ENST00000346085	NM_017519	exon1	c.G360A	p.Q120Q	GCAGCAGCAACAG	.	6	2	8	0	.	0
TACC3	10460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1729639	1729639	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_006342	exon4	c.T510C	p.S170S	GGTGTCTCCAGGA	.	59	8	39	0	.	.
NETO1	81832	hgsc.bcm.edu	37	18	70450978	70450978	+	Missense_Mutation	SNP	C	C	T	rs370635787		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	NETO1,colon,carcinoma,0,1	NETO1	NM_001201465	exon7	c.G803A	p.R268H	CACATGCGGATCA	.	40	3	32	0	.	0
KCTD3	51133	hgsc.bcm.edu	37	1	215753330	215753330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_016121	exon8	c.C614T	p.A205V	ATTTTGCTGTGTG	.	88	3	60	0	.	.
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	123210346	123210346	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_015312	exon52	c.T9387C	p.S3129S	AGTTTCTGGTAAG	.	67	6	38	0	.	.
PHTF1	10745	hgsc.bcm.edu	37	1	114247312	114247312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	PHTF1,colon,carcinoma,0,1	PHTF1	NM_006608	exon13	c.G1779T	p.W593C	TGATAACCATATT	.	49	2	48	0	.	0
KIAA1211L	343990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	99411049	99411049	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_207362	exon10	c.A2835G	p.E945E	GGCAAGTTCCATC	.	38	9	24	0	.	.
SPATA22	84690	hgsc.bcm.edu	37	17	3370841	3370841	+	Silent	SNP	C	C	T	rs80115425	bycluster;alternate_allele	TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_032598	exon3	c.G51A	p.L17L	AACAGGCAAACAG	.	95	4	89	0	.	.
JMJD4	65094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	227922428	227922428	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_023007	exon2	c.T490C	p.Y164H	TCCAGTAGGTGAT	.	29	7	25	0	.	.
RELN	5649	hgsc.bcm.edu	37	7	103124180	103124180	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	RELN,NS,carcinoma,0,1	RELN	NM_173054	exon62	c.C10101T	p.N3367N	GATCCCGTTGTTG	.	28	2	28	1	.	0
BAI1	575	hgsc.bcm.edu;bcgsc.ca	37	8	143558848	143558848	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_001702	exon5	c.G1325T	p.G442V	AGTTTGGGGGCAA	.	50	4	37	0	.	.
KCNT2	343450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	196295911	196295911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_198503	exon19	c.C2212T	p.P738S	TGAGAGGAACAAT	.	127	19	53	0	.	.
PTPRE	5791	hgsc.bcm.edu	37	10	129875976	129875976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_006504	exon19	c.G1821T	p.M607I	AGGCATGATTGAC	.	46	3	64	0	.	.
CLDN16	10686	hgsc.bcm.edu	37	3	190106072	190106072	+	Missense_Mutation	SNP	G	G	T	rs201380153	alternate_allele	TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.,1	.	NM_006580	exon1	c.G164T	p.R55M	GGGCCAGGGCTGG	.	31	2	23	0	.	59
ZCCHC5	203430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	77912769	77912769	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_152694	exon2	c.T1149C	p.S383S	GAGATCAGATAGG	.	15	7	12	0	.	.
LRRK1	79705	hgsc.bcm.edu	37	15	101566296	101566296	+	Missense_Mutation	SNP	G	G	T	rs367783860	alternate_allele	TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	LRRK1_ENST00000388948,NS,carcinoma,0,2	LRRK1_ENST00000388948	NM_024652	exon17	c.G2359T	p.G787C	CCCTCCGGCTCCA	.	46	2	23	0	.	0
CXorf57	55086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	105876175	105876175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_018015	exon5	c.G1102T	p.D368Y	CTGGATGATATGC	.	140	13	113	0	.	.
ADRBK1	156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	67051372	67051372	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	ADRBK1,NS,carcinoma,0,1	ADRBK1	NM_001619	exon17	c.C1443T	p.D481D	GGCCGACGCCTTC	.	36	4	15	0	.	0
SCCPDH	51097	hgsc.bcm.edu	37	1	246929442	246929442	+	Splice_Site	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_016002	exon11	c.1184+1G>A	.	TAAGGCGTAAGTT	.	61	4	46	0	.	.
OR52E8	390079	hgsc.bcm.edu	37	11	5878458	5878458	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	OR52E8,NS,carcinoma,0,1	OR52E8	NM_001005168	exon1	c.C475T	p.L159L	TGTACAGGCTCCT	.	39	2	28	1	.	0
FAM209A	200232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	55100881	55100881	+	Nonsense_Mutation	SNP	C	C	T	rs368902169		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	C20orf106,NS,carcinoma,0,1	C20orf106	NM_001012971	exon2	c.C271T	p.R91X	GGCCTTCGAGGCG	.	31	6	31	0	.	0
OR8B8	26493	hgsc.bcm.edu	37	11	124310958	124310958	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	OR8B8,NS,chondrosarcoma,0,1	OR8B8	NM_012378	exon1	c.C24G	p.F8L	TGTCACGAAGGAG	.	16	2	27	0	.	0
ACBD3	64746	broad.mit.edu	37	1	226349273	226349296	+	In_Frame_Del	DEL	CCTTTCCTCTTCCTCCCGTCGAAG	CCTTTCCTCTTCCTCCCGTCGAAG	-	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	ACBD3	NM_022735	exon4	c.664_687del	p.222_229del	CCGTCTCCTTTCC	.	55	6	51	0	.	38
ADCY10	55811	broad.mit.edu	37	1	167873153	167873153	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	ADCY10,NS,carcinoma,-1,1	ADCY10	NM_018417	exon3	c.C225A	p.L75L	GTAGTTGAGGATC	.	87	3	40	0	.	175
KLHL20	27252	broad.mit.edu	37	1	173722361	173722361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	KLHL20	NM_014458	exon5	c.C766T	p.H256Y	CTGCAGCATGTTC	.	43	4	26	0	.	54
LAX1	54900	broad.mit.edu	37	1	203743058	203743058	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	LAX1	NM_017773	exon5	c.A446G	p.E149G	CCACAGAGTACGC	.	13	3	12	0	.	48
NBPF10	100132406	broad.mit.edu	37	1	145323666	145323666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	NBPF10,NS,carcinoma,-1,6	NBPF10	NM_001039703	exon27	c.A3503G	p.D1168G	AAAAGGACGAAGA	.	136	5	100	0	.	221
PADI6	353238	broad.mit.edu	37	1	17725155	17725162	+	RNA	DEL	CCCCCCCA	CCCCCCCA	-	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	PADI6	.	.	.	.	CGCCCCCCCCCCC	.	13	3	7	0	.	51
PTGER3	5733	broad.mit.edu	37	1	71512790	71512790	+	Silent	SNP	C	C	G	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	PTGER3	NM_001126044	exon1	c.G471C	p.L157L	GATGGCCAGCGCC	.	44	6	32	0	.	246
TBCE	6905	broad.mit.edu	37	1	235602123	235602123	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	TBCE,NS,carcinoma,-1,3	TBCE	NM_003193	exon13	c.C1156A	p.R386R	GACTACCGAAAAG	.	77	3	43	0	.	40
ANK3	288	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61900193	61900193	+	Translation_Start_Site	SNP	A	A	C	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	ANK3	.	.	.	.	ATTTAGAATCAAC	.	34	4	38	0	.	703
CAPRIN1	4076	broad.mit.edu	37	11	34101180	34101180	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	CAPRIN1	NM_203364	exon7	c.G694C	p.V232L	GATAAAGTTCTAA	.	40	3	35	0	.	110
CAPRIN1	4076	broad.mit.edu	37	11	34110974	34110974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	CAPRIN1	NM_203364	exon12	c.C1264A	p.Q422K	CCTAATCAAGTTC	.	44	3	44	0	.	110
BRF1	2972	broad.mit.edu;bcgsc.ca	37	14	105722744	105722744	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	BRF1	NM_001242790	exon4	c.G582A	p.P194P	ACAGACCGGCCAC	.	54	5	50	0	.	102
KDM6B	23135	broad.mit.edu	37	17	7750178	7750186	+	In_Frame_Del	DEL	ACCACCACC	ACCACCACC	-	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	KDM6B	NM_001080424	exon9	c.753_761del	p.251_254del	ACCATTACCACCA	.	8	3	9	0	.	95
KRT16P3	0	broad.mit.edu	37	17	20407305	20407305	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	.	.	.	.	CCAGGTCGGCGTT	.	98	15	116	0	.	.
KRTAP4-7	100132476	broad.mit.edu	37	17	39240627	39240627	+	Missense_Mutation	SNP	T	T	C	rs189343211	bycluster	TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	KRTAP4-9_ENST00000377734,NS,carcinoma,0,22	KRTAP4-7	NM_033061	exon1	c.T169C	p.S57P	TGCCAGTCTGTGT	.	99	5	112	2	.	49
SERTAD1	29950	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40929001	40929001	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	SERTAD1	NM_013376	exon2	c.C453T	p.S151S	ACCCAGGCTGGGC	.	29	4	37	0	.	18
AMMECR1L	83607	broad.mit.edu	37	2	128628430	128628430	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	AMMECR1L	NM_031445	exon5	c.C591A	p.L197L	AGTAAGGAGGGAG	.	35	3	26	0	.	22
.	400986	broad.mit.edu	37	2	96643871	96643871	+	Splice_Site	SNP	T	T	C	rs201215924		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	ENSG00000174501,NS,carcinoma,0,2	.	.	.	.	.	CTTACCTGGATTG	.	98	5	76	1	.	.
NOA1	84273	broad.mit.edu	37	4	57843464	57843464	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	NM_032313	exon1	c.A288G	p.Q96Q	CTGCTGTTGCTGG	.	27	3	19	0	.	.
TBC1D9	23158	broad.mit.edu	37	4	141677078	141677080	+	In_Frame_Del	DEL	CCG	CCG	-	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	TBC1D9	NM_015130	exon1	c.120_122del	p.40_41del	GCCAGTCCGCCGC	.	6	2	7	0	.	198
NSD1	64324	broad.mit.edu	37	5	176721680	176721680	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	NSD1	NM_022455	exon23	c.A7311G	p.K2437K	AGAAAAAGCACTG	.	35	3	30	0	.	416
PTCD2	79810	broad.mit.edu	37	5	71630907	71630907	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	PTCD2	NM_024754	exon5	c.C531G	p.I177M	ATTTATCAAAGGC	.	45	5	46	0	.	31
ZNF184	7738	broad.mit.edu	37	6	27420368	27420368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	ZNF184	NM_007149	exon6	c.C970A	p.H324N	TCTGATGCTGAAC	.	52	4	47	0	.	89
GTF2I	2969	broad.mit.edu	37	7	74148279	74148279	+	Missense_Mutation	SNP	A	A	G	rs1135649		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	GTF2I,NS,carcinoma,0,7	GTF2I	NM_032999	exon16	c.A1319G	p.N440S	TTCTGAATTCAAC	.	258	5	259	1	.	40
RPS6KA3	6197	broad.mit.edu	37	X	20179855	20179855	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	RPS6KA3	NM_004586	exon20	c.T1866C	p.P622P	ATCATCAGGACCA	.	70	4	39	0	.	110
ACTR3B	57180	ucsc.edu	37	7	152497656	152497656	+	Silent	SNP	T	T	C	rs2462099		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	ACTR3B,NS,carcinoma,+1,1	ACTR3B	NM_020445	exon3	c.T141C	p.A47A	CCAAGCTCAAAGG	.	68	10	57	1	.	50
FZD10	11211	ucsc.edu	37	12	130648884	130648884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	FZD10	NM_007197	exon1	c.G1397A	p.R466H	ACGAACGCCTCAA	.	33	4	27	0	.	95
ACTC1	70	ucsc.edu	37	15	35084309	35084309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	ACTC1	NM_005159	exon5	c.T790C	p.F264L	GCTGGAAGAGTGT	.	32	4	23	0	.	75
LRRC45	201255	ucsc.edu;bcgsc.ca	37	17	79987031	79987031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	LRRC45	NM_144999	exon13	c.G1371T	p.R457S	GCAGAGGCTGGAG	.	25	4	26	0	.	22
DDX53	168400	ucsc.edu;bcgsc.ca	37	X	23018970	23018970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	DDX53	NM_182699	exon1	c.G796A	p.A266T	GTAGTTGCACAAA	.	36	4	56	0	.	76
CRYZ	1429	bcgsc.ca	37	1	75172874	75172874	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	CRYZ	NM_001889	exon7	c.G645T	p.E215D	TCCTTTCTCACCA	.	67	4	53	0	.	28
RBMS1	5937	bcgsc.ca	37	2	161157164	161157164	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	RBMS1	NM_016836	exon6	c.C638A	p.S213Y	ATACCAGAAACTC	.	70	4	67	0	.	34
TTN	7273	bcgsc.ca	37	2	179615544	179615544	+	Silent	SNP	C	T	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	TTN	NM_133379	exon46	c.G11583A	p.K3861K	TTCCTCCTTCTCA	.	27	3	32	0	.	18412
.	0	bcgsc.ca	37	3	98378947	98378947	+	RNA	SNP	G	A	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	.	.	.	.	TCTCGAGGAGTAC	.	52	16	45	0	.	.
DDX60	55601	bcgsc.ca	37	4	169169372	169169372	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	DDX60	NM_017631	exon29	c.C3930A	p.N1310K	GACTGAGTTTTGA	.	41	4	41	0	.	304
OPRM1	4988	bcgsc.ca	37	6	154360621	154360621	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	OPRM1	NM_001145279	exon3	c.G221A	p.R74Q	GAACCCGAAAAGT	.	53	4	39	0	.	241
.	647047	bcgsc.ca	37	7	42834653	42834653	+	RNA	SNP	G	T	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	.	.	.	.	ATATTGGTGATGT	.	21	4	30	0	.	.
.	0	bcgsc.ca	37	7	65305498	65305498	+	RNA	SNP	G	A	A	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	.	.	.	.	ACTGCCGGCCTTT	.	20	4	26	0	.	.
.	399774	bcgsc.ca	37	10	54172539	54172539	+	RNA	SNP	A	T	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	.	.	.	.	CAACGAAGTGATG	.	60	14	75	0	.	.
CHEK1	1111	bcgsc.ca	37	11	125514458	125514458	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	CHEK1	NM_001244846	exon11	c.G1153T	p.D385Y	AAATTGGATGCAG	.	55	4	60	0	.	44
GJC1	10052	bcgsc.ca	37	17	42882468	42882468	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	GJC1	NM_005497	exon3	c.G718A	p.G240S	AAAGGCCTGTAAC	.	21	3	22	0	.	45
HEATR6	63897	bcgsc.ca	37	17	58137371	58137371	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	HEATR6	NM_022070	exon10	c.C1503A	p.H501Q	CCTTCTGTGGTCA	.	52	4	39	0	.	98
.	170536	bcgsc.ca	37	20	41859856	41859856	+	RNA	SNP	A	G	G	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	.	.	.	.	AAGACCAGCAAGA	.	42	10	26	0	.	.
ARSH	347527	bcgsc.ca	37	X	2945415	2945415	+	Silent	SNP	G	T	T	rs373570475	alternate_allele	TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	ARSH	NM_001011719	exon7	c.G1098T	p.P366P	GTGGCCGTCAGTC	.	21	3	33	0	.	72
PRKDC	5591	hgsc.bcm.edu	37	8	48842481	48842481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA30-01A-31D-A417-09	TCGA-W5-AA30-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b80ae99-7f0c-43af-b383-7d6939cdf3e8	223d9406-0f92-4953-b37e-0fffb0ccbe9a	.	.	.	p.L662I	.	.	TGATGAGGGGCAA	.	67	3	74	0	.	.