Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL NTotCov_SOL NVarCov_SOL dbSNPPopFreq COSMIC_Gene_Freq MLL2 8085 hgsc.bcm.edu 37 12 49426576 49426578 + In_Frame_Del DEL TGC TGC - novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 TGC TGC . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_003482 exon39 c.11911_11913del p.3971_3971del TGCTGTTGCTGCT . 49 10 24 0 . . TP53 7157 hgsc.bcm.edu 37 17 7577579 7577580 + Frame_Shift_Ins INS - - T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 - - . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e TP53_ENST00000545858,colon,carcinoma,0,21 TP53_ENST00000545858 NM_001126112 exon7 c.702_703insA p.Y234_N235delinsX GTAGTTGTAGTGG . 18 10 33 0 . 0 FGFR2 2263 hgsc.bcm.edu 37 10 123278298 123278299 + In_Frame_Ins INS - - GAA novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 - - . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_022970 exon8 c.985_986insTTC p.N329delinsFN TCACATTGAACAG . 60 44 28 0 . . MLL2 8085 hgsc.bcm.edu 37 12 49426590 49426592 + In_Frame_Del DEL AAA AAA - novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 AAA AAA . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_003482 exon39 c.11897_11899del p.3966_3967del CTGTTGAAACTGC . 43 11 20 0 . . MLL2 8085 hgsc.bcm.edu 37 12 49426567 49426632 + In_Frame_Del DEL TGCTGCTGTTGCTGCTGCTGTTGAAACTGCTGCTGTTGTTGTTGCTGTTGCTGTTGTAGCTGCTGT TGCTGCTGTTGCTGCTGCTGTTGAAACTGCTGCTGTTGTTGTTGCTGTTGCTGTTGTAGCTGCTGT - novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 TGCTGCTGTTGCTGCTGCTGTTGAAACTGCTGCTGTTGTTGTTGCTGTTGCTGTTGTAGCTGCTGT TGCTGCTGTTGCTGCTGCTGTTGAAACTGCTGCTGTTGTTGTTGCTGTTGCTGTTGTAGCTGCTGT . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_003482 exon39 c.11857_11922del p.3953_3974del CCCATCTGCTGCT . 54 0 24 0 . . ERBB4 2066 hgsc.bcm.edu 37 2 212251586 212251586 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_005235 exon27 c.C3473A p.P1158H TGTTTGGGTTTGT . 94 4 72 0 . . C2CD3 26005 hgsc.bcm.edu;bcgsc.ca 37 11 73805030 73805030 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_015531 exon18 c.C3175A p.P1059T TGAAGGGCTTCAG . 54 5 45 0 . . TBX1 6899 hgsc.bcm.edu 37 22 19752563 19752563 + Missense_Mutation SNP C C T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e TBX1_ENST00000359500,brain,atypical_teratoid-rhabdoid_tumour,0,3 TBX1_ENST00000359500 NM_080647 exon6 c.C767T p.A256V AATATGCCGAGGA . 52 3 30 0 . 0 ADAMTS20 80070 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 43770341 43770341 + Missense_Mutation SNP C C T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_025003 exon33 c.G5111A p.C1704Y GCATAACATTTCT . 68 21 30 0 . . DAW1 164781 hgsc.bcm.edu 37 2 228771962 228771962 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_178821 exon10 c.G967T p.A323S GCTTCAGCTGATG . 90 4 56 0 . . HOXB2 3212 hgsc.bcm.edu 37 17 46622342 46622342 + RNA SNP T T C novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . CCCCCCTCCTGCA . 78 7 41 0 . . COX2 5743 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 MT 7805 7805 + Missense_Mutation SNP G G A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . ENST00000361739 exon1 c.G220A p.V74I ATCCTAGTCCTCA . 2179 787 355 1 . . NLRP5 126206 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 56515295 56515295 + Silent SNP C C T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_153447 exon2 c.C276T p.T92T ATCGACCACATGC . 91 29 48 0 . . DNAJC3 5611 hgsc.bcm.edu 37 13 96412357 96412357 + Missense_Mutation SNP C C A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e DNAJC3,NS,carcinoma,0,1 DNAJC3 NM_006260 exon6 c.C610A p.P204T GGAGAACCTAGGA . 46 2 55 0 . 0 MTSS1 9788 hgsc.bcm.edu 37 8 125568538 125568538 + Missense_Mutation SNP C C T rs371399134 TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e MTSS1,lower_third,carcinoma,0,1 MTSS1 NM_014751 exon12 c.G1339A p.G447S GTGGGCCGCTGGC . 37 3 32 0 . 0 FBN3 84467 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 8191217 8191217 + Missense_Mutation SNP G G A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_032447 exon20 c.C2569T p.R857W AGCCCCGGGCACA . 110 44 60 0 . . TG 7038 hgsc.bcm.edu;bcgsc.ca 37 8 133885348 133885348 + Missense_Mutation SNP G G T rs370188499 alternate_allele TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_003235 exon5 c.G520T p.G174W CTCCACGGGGTGG . 46 4 29 0 . . KLK14 43847 hgsc.bcm.edu;bcgsc.ca 37 19 51585890 51585890 + Silent SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_022046 exon3 c.C30A p.T10T GGGCCAGGTCCTG . 83 5 56 0 . . ATN1 1822 hgsc.bcm.edu 37 12 7043191 7043191 + Silent SNP G G T rs147637415 alternate_allele TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_001007026 exon2 c.G27T p.S9S AGACTCGGTGAGT . 69 4 47 0 . . PSORS1C1 170679 hgsc.bcm.edu 37 6 31106500 31106500 + Silent SNP T T C novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e .,2 . NM_014068 exon5 c.T111C p.R37R AACTCGTCCCCCC . 66 4 54 0 . 11 ZNF329 79673 hgsc.bcm.edu 37 19 58639391 58639391 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_024620 exon4 c.C1480A p.Q494K AGTTCTGCTTGAA . 75 4 29 0 . . OR6C3 254786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 55725675 55725675 + Missense_Mutation SNP C C A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_054104 exon1 c.C191A p.S64Y ACTTCTCTTTCTT . 81 33 36 0 . . CNTNAP2 26047 hgsc.bcm.edu 37 7 147964169 147964169 + Silent SNP C C T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_014141 exon21 c.C3426T p.S1142S TTCATCCGACACC . 69 4 38 0 . . VAV3 10451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 108247684 108247684 + Splice_Site SNP C C A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_006113 exon17 c.1503-1G>T . TTAGACCTAAAAA . 65 25 34 0 . . GALNT11 63917 hgsc.bcm.edu 37 7 151818669 151818669 + Silent SNP C C T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_022087 exon12 c.C1734T p.C578C ACAGTGCCTGAGA . 64 5 20 0 . . IDH1 3417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 209113113 209113113 + Missense_Mutation SNP G G A rs121913499 bycluster TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e IDH1,NS,haematopoietic_neoplasm,0,788 IDH1 NM_005896 exon4 c.C394T p.R132C CATGACGACCTAT . 79 41 35 0 . 0 WNT5A 7474 hgsc.bcm.edu 37 3 55504231 55504231 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e WNT5A,NS,carcinoma,0,1 WNT5A NM_003392 exon5 c.C1032A p.Y344X CTGGTCGTAGCCA . 45 2 52 1 . 0 LAMC3 10319 hgsc.bcm.edu 37 9 133942411 133942411 + Silent SNP C C A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e LAMC3,NS,carcinoma,0,1 LAMC3 NM_006059 exon14 c.C2412A p.P804P GCACCCCCAGCCC . 47 3 39 0 . 0 ZNRD1-AS1 80862 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 30025956 30025956 + RNA SNP C C A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . GATGTACCCCAGG . 56 28 69 0 . . MUC16 94025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 9072960 9072960 + Missense_Mutation SNP T T C novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_024690 exon3 c.A14486G p.N4829S ACTGTGTTTATGG . 110 38 20 0 . . POTEF 728378 hgsc.bcm.edu 37 2 130832762 130832762 + Silent SNP T T C rs2599797 TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e POTEF,NS,carcinoma,0,1 POTEF NM_001099771 exon17 c.A2283G p.K761K GCCTCTTTTGCTC . 98 8 51 0 . 0 ZNF547 284306 hgsc.bcm.edu 37 19 57888521 57888521 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_173631 exon4 c.G177T p.E59D GGATGAGGAGGCA . 58 4 31 0 . . VCAM1 7412 hgsc.bcm.edu;bcgsc.ca 37 1 101186235 101186235 + Missense_Mutation SNP G G A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e VCAM1,NS,carcinoma,0,1 VCAM1 NM_001078 exon2 c.G268A p.E90K GGGAACGAACACT . 75 4 45 0 . 0 HLA-B 3106 hgsc.bcm.edu 37 6 31322910 31322910 + Missense_Mutation SNP G G A rs74189305 bycluster TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e HLA-B,NS,carcinoma,-1,4 HLA-B NM_005514 exon5 c.C986T p.A329V ATCACAGCAGCGA . 54 3 46 2 . -1 RPUSD4 84881 hgsc.bcm.edu;bcgsc.ca 37 11 126079517 126079517 + Silent SNP C C T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_001144827 exon3 c.G456A p.L152L CTTGTCCAGCCGG . 47 4 40 0 . . ZMYM6 9204 hgsc.bcm.edu 37 1 35472571 35472571 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_007167 exon12 c.C1794A p.D598E AAGACAGTCATTC . 94 4 104 0 . . ATM 472 hgsc.bcm.edu 37 11 108205808 108205808 + Missense_Mutation SNP A A T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e ATM_ENST00000278616,colon,carcinoma,0,2 ATM_ENST00000278616 NM_000051 exon55 c.A8123T p.D2708V GTTCCGATGGCAA . 73 3 53 0 . 0 FRY 10129 hgsc.bcm.edu 37 13 32653148 32653148 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_023037 exon2 c.G248T p.R83L AGATTCGTATCAT . 54 4 70 0 . . TMED2 10959 hgsc.bcm.edu;bcgsc.ca 37 12 124071376 124071376 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_006815 exon2 c.G263T p.G88V TGGATGGAACATA . 91 4 55 0 . . MLLT10P1 140678 hgsc.bcm.edu 37 20 29637755 29637755 + RNA SNP A A G rs138209891 bycluster TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . CTATTAATATTAT . 73 3 31 0 . . PPL 5493 hgsc.bcm.edu 37 16 4935049 4935049 + Silent SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e PPL,NS,carcinoma,0,2 PPL NM_002705 exon22 c.C3607A p.R1203R CACCCCGGTACTT . 18 2 15 0 . 0 MRGPRX1 259249 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 18955600 18955600 + Silent SNP C C T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_147199 exon1 c.G732A p.V244V CCTGTCCACGTGG . 92 27 55 0 . . MLLT10P1 140678 hgsc.bcm.edu 37 20 29638070 29638070 + RNA SNP T T G rs2313018 TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . TAACATTTTGATT . 77 5 36 0 . . C3P1 388503 hgsc.bcm.edu 37 19 10153492 10153492 + RNA SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . ATCGAAGTAAAGA . 48 4 37 0 . . SLFN11 91607 hgsc.bcm.edu;bcgsc.ca 37 17 33690820 33690820 + Missense_Mutation SNP C C T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_152270 exon2 c.G7A p.A3T GATTTGCCTCCAT . 84 4 35 0 . . AAK1 22848 hgsc.bcm.edu 37 2 69741780 69741780 + Missense_Mutation SNP C C G novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e AAK1_ENST00000409085,NS,carcinoma,0,2 AAK1_ENST00000409085 NM_014911 exon13 c.G1599C p.Q533H CTGCTGCTGGTAG . 72 6 47 0 . 0 TSNARE1 203062 hgsc.bcm.edu 37 8 143436077 143436077 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_145003 exon2 c.C9A p.Y3X GGATCCGTATGAC . 61 4 47 0 . . LINC00473 90632 hgsc.bcm.edu 37 6 166355810 166355810 + RNA SNP A A G novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . ATGCGCACACACA . 55 6 48 0 . . C1orf172 126695 hgsc.bcm.edu 37 1 27278443 27278443 + Silent SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e .,1 . NM_152365 exon2 c.C429A p.P143P CCGGCTGGGGGGT . 17 2 24 0 . 38 MUC4 4585 hgsc.bcm.edu 37 3 195507064 195507064 + Missense_Mutation SNP G G C novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e MUC4_ENST00000463781,NS,carcinoma,0,1 MUC4_ENST00000463781 NM_018406 exon2 c.C11387G p.T3796S GTGTCGGTGACAG . 255 10 95 1 . 0 SLCO1B3 28234 hgsc.bcm.edu 37 12 21033923 21033923 + Missense_Mutation SNP G G A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_019844 exon12 c.G1466A p.C489Y CAGGATGCAAATC . 98 5 57 0 . . MUSK 4593 hgsc.bcm.edu 37 9 113449410 113449410 + Silent SNP C C A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e MUSK,NS,carcinoma,0,1 MUSK NM_001166281 exon3 c.C220A p.R74R GACACCCGGTACA . 46 2 47 0 . 0 AKNA 80709 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 117105995 117105995 + Silent SNP C C T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_030767 exon19 c.G3750A p.Q1250Q CGCATCCTGGGTC . 50 17 17 0 . . ASPHD2 57168 hgsc.bcm.edu 37 22 26830408 26830408 + Missense_Mutation SNP C C A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_020437 exon2 c.C827A p.P276H TGAGCCCTGGGAC . 78 4 54 0 . . RMST 196475 hgsc.bcm.edu 37 12 97908556 97908556 + RNA SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . ACCTTGGGACTTA . 42 4 16 0 . . NSUN2 54888 hgsc.bcm.edu 37 5 6622195 6622195 + Missense_Mutation SNP C C T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_017755 exon6 c.G556A p.A186T CAGGTGCTGCACA . 81 4 43 0 . . HNRNPCL1 343069 hgsc.bcm.edu 37 1 12907275 12907275 + Missense_Mutation SNP G G C novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e HNRNPCL1,NS,neuroblastoma,0,1 HNRNPCL1 NM_001013631 exon2 c.C868G p.Q290E CATCCTGGCCATT . 75 4 60 0 . 0 TTN 7273 hgsc.bcm.edu 37 2 179650369 179650369 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_001267550 exon15 c.C2471A p.P824H GTCTTAGGAACAG . 94 4 43 0 . . EP300 2033 hgsc.bcm.edu 37 22 41547849 41547849 + Missense_Mutation SNP G G A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_001429 exon15 c.G2830A p.A944T CAGCCAGCTGTAA . 73 5 29 0 . . LRRC37A3 374819 hgsc.bcm.edu 37 17 62856687 62856687 + Missense_Mutation SNP C C A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_199340 exon11 c.G3577T p.A1193S CCTGGGCACCCTG . 176 7 64 0 . . SQRDL 58472 hgsc.bcm.edu;broad.mit.edu 37 15 45954270 45954270 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_021199 exon3 c.G352T p.V118L GCTAGAGTGACTG . 98 4 54 0 . . EP400 57634 hgsc.bcm.edu 37 12 132547144 132547144 + Silent SNP G G A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e EP400,NS,carcinoma,0,1 EP400 NM_015409 exon47 c.G8232A p.Q2744Q ACAGCAGCAGCAG . 55 7 22 1 . 0 PRR21 643905 hgsc.bcm.edu 37 2 240981683 240981683 + Silent SNP A A G novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e PRR21,NS,carcinoma,0,2 PRR21 NM_001080835 exon1 c.T717C p.H239H AGAGGCATGGACG . 22 5 7 0 . 0 FAM122C 159091 hgsc.bcm.edu;bcgsc.ca 37 X 133938244 133938244 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_001170780 exon3 c.G17T p.G6V TCCCTGGAACTGG . 52 4 38 0 . . NRXN1 9378 hgsc.bcm.edu 37 2 50699451 50699451 + Nonsense_Mutation SNP C C A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e NRXN1_ENST00000536085,NS,carcinoma,0,3 NRXN1_ENST00000536085 NM_001135659 exon17 c.G3349T p.E1117X CTCTCTCGATCTG . 70 4 41 0 . 0 ZNF85 7639 hgsc.bcm.edu 37 19 21131993 21131993 + Missense_Mutation SNP A A G novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_001256171 exon5 c.A763G p.T255A ATTCATACGGGAG . 78 4 51 0 . . EMR3 84658 hgsc.bcm.edu 37 19 14736408 14736408 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_032571 exon15 c.C1816A p.Q606K GTTTCTGGACCTG . 84 4 33 0 . . UBAC1 10422 hgsc.bcm.edu 37 9 138836946 138836946 + Missense_Mutation SNP C C A rs200169387 TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e UBAC1,caecum,adenoma,0,1 UBAC1 NM_016172 exon7 c.G804T p.E268D GGCCTCCTCATCG . 31 4 14 0 . 0 CPNE1 8904 hgsc.bcm.edu 37 20 34218396 34218396 + Missense_Mutation SNP G G A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_003915 exon13 c.C1082T p.A361V TTCAAGGCAAATT . 98 4 56 0 . . KRTDAP 388533 hgsc.bcm.edu 37 19 35978354 35978354 + Silent SNP C C T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_207392 exon6 c.G276A p.R92R TGCGCTCCTCAGT . 84 4 28 0 . . CA6 765 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 9027751 9027751 + Missense_Mutation SNP A A G novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_001270500 exon6 c.A605G p.Q202R ACGTTCAGGACAT . 31 25 28 0 . . BBX 56987 hgsc.bcm.edu 37 3 107435575 107435575 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_001142568 exon5 c.G284T p.R95L GCCATCGCTCTCT . 83 4 54 0 . . CPXM1 56265 hgsc.bcm.edu 37 20 2776024 2776024 + Nonsense_Mutation SNP C C A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e CPXM1,NS,carcinoma,0,1 CPXM1 NM_019609 exon12 c.G1759T p.E587X TGACCTCAAAGCA . 32 2 17 0 . 0 FANCD2 2177 hgsc.bcm.edu 37 3 10108913 10108913 + Missense_Mutation SNP G G T rs80258959 bycluster TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e FANCD2,NS,carcinoma,0,2 FANCD2 NM_001018115 exon26 c.G2406T p.Q802H CTGCCAGGAAACA . 38 2 45 0 . 0 MUC4 4585 hgsc.bcm.edu 37 3 195513782 195513782 + Missense_Mutation SNP C C T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_018406 exon2 c.G4669A p.D1557N AAGCGTCGGTGAC . 242 16 66 0 . . XRCC6BP1 91419 hgsc.bcm.edu 37 12 58340779 58340779 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_033276 exon3 c.G235T p.A79S TTTAGTGCTGTTA . 80 4 34 0 . . STAU2-AS1 100128126 hgsc.bcm.edu 37 8 74334955 74334955 + RNA SNP C C G novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . AACAAACAGAGAG . 36 4 40 0 . . ZNF750 79755 hgsc.bcm.edu 37 17 80788577 80788577 + Missense_Mutation SNP G G T rs142714888 alternate_allele TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_024702 exon3 c.C1613A p.A538E GTTTCCGCCTGGG . 82 4 44 0 . . EIF4G2 1982 hgsc.bcm.edu 37 11 10821765 10821765 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_001172705 exon18 c.C1991A p.P664Q TCTAGTGGTTGAG . 71 4 30 0 . . SEMA6C 10500 hgsc.bcm.edu;broad.mit.edu 37 1 151109372 151109372 + Missense_Mutation SNP C C T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e SEMA6C,NS,carcinoma,0,1 SEMA6C NM_001178061 exon11 c.G935A p.R312H GCAGAGCGGCCAT . 59 4 54 0 . 0 RNU6-71 100873774 hgsc.bcm.edu 37 6 56327829 56327829 + RNA SNP G G A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . GACTCTGGGGCCT . 49 4 43 0 . . RBM47 54502 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 4 40434693 40434693 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_001098634 exon6 c.C1517A p.T506N GACACAGTGGGAA . 40 4 39 0 . . BLOC1S5-TXNDC5 100526836 hgsc.bcm.edu 37 6 8027745 8027745 + RNA SNP T T C novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . TAATGATAACCAC . 34 19 19 0 . . STARD9 57519 hgsc.bcm.edu;bcgsc.ca 37 15 42981584 42981584 + Missense_Mutation SNP C C T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_020759 exon23 c.C7808T p.S2603L AGTCATCATCAGA . 50 18 29 0 . . MARCH6 10299 hgsc.bcm.edu;bcgsc.ca 37 5 10411446 10411446 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_005885 exon19 c.G1693T p.D565Y CACAGGGATCTTC . 86 5 42 0 . . MYO15B 80022 hgsc.bcm.edu 37 17 73616212 73616212 + RNA SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . ATCCCTGGAAGTC . 29 4 8 0 . . SOS1 6654 hgsc.bcm.edu 37 2 39222277 39222277 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_005633 exon20 c.C3333A p.S1111R AAAAGGGCTCGAA . 91 5 68 0 . . C21orf90 114043 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 21 45938574 45938574 + RNA SNP G G A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . TCATTCGTTAGAT . 24 11 15 0 . . PIK3CB 5291 hgsc.bcm.edu 37 3 138407796 138407796 + Missense_Mutation SNP G G A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_006219 exon14 c.C2057T p.A686V GAGACAGCAGGAA . 55 4 43 0 . . MVD 4597 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 88721635 88721635 + Missense_Mutation SNP C C T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_002461 exon7 c.G869A p.R290H TTGAAGCGGTGCA . 42 12 25 0 . . NYAP2 57624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 2 226447575 226447575 + Nonsense_Mutation SNP C C A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_020864 exon4 c.C1442A p.S481X CCGTGTCGCAAGA . 71 24 37 0 . . LAMA3 3909 hgsc.bcm.edu 37 18 21513818 21513818 + Silent SNP C C T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_198129 exon67 c.C8781T p.C2927C AGGCTGCAGTTTA . 90 5 44 0 . . CSNK1A1L 122011 hgsc.bcm.edu 37 13 37678436 37678436 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e CSNK1A1L,NS,carcinoma,0,1 CSNK1A1L NM_145203 exon1 c.C958A p.Q320K GGGTTTGGGCCTG . 43 2 30 0 . 0 MACF1 23499 hgsc.bcm.edu 37 1 39766025 39766025 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_012090 exon23 c.G2640T p.R880S CTACAGGCAGATC . 66 5 19 0 . . NDST4 64579 hgsc.bcm.edu 37 4 115858480 115858480 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_022569 exon5 c.C1401A p.S467R CATGATGCTATTG . 58 3 49 0 . . DDHD1 80821 hgsc.bcm.edu 37 14 53619480 53619480 + Missense_Mutation SNP T T C rs200797826 bycluster TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e .,102 . NM_001160147 exon1 c.A337G p.S113G AGGAGCTGCCGCC . 22 0 13 0 . 202 RNR1 6052 hgsc.bcm.edu 37 MT 762 762 + RNA SNP G G A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . CATCAAGCACGCA . 876 117 143 0 . . CLGN 1047 hgsc.bcm.edu 37 4 141321605 141321605 + Silent SNP G G T rs138156952 TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e CLGN,hand,malignant_melanoma,0,1 CLGN NM_001130675 exon8 c.C600A p.P200P AGTTTTGGGATGT . 45 2 31 0 . 0 tRNA-Pro 0 hgsc.bcm.edu 37 MT 15961 15961 + RNA SNP G G A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . ATCAGAGAAAAAG . 35 8 7 0 . . TAF1L 138474 hgsc.bcm.edu 37 9 32631851 32631851 + Missense_Mutation SNP G G A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e TAF1L,NS,carcinoma,+2,2 TAF1L NM_153809 exon1 c.C3727T p.R1243W TCCGCCGTTCTTT . 79 3 37 0 . +2 ZFP106 64397 hgsc.bcm.edu 37 15 42740764 42740764 + Silent SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e ZFP106,caecum,carcinoma,0,1 ZFP106 NM_022473 exon3 c.C2572A p.R858R GGCTTCGCTTTCT . 59 4 50 0 . 0 ANKRD20A5P 440482 hgsc.bcm.edu 37 18 14214318 14214318 + RNA SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . TATTAGGTTTTTT . 141 6 138 0 . . PDCL 5082 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 9 125588973 125588973 + Nonsense_Mutation SNP G G A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e PDCL,NS,carcinoma,0,1 PDCL NM_005388 exon2 c.C94T p.R32X TGCCTCGGTCCTT . 57 19 29 0 . 0 TMPRSS11A 339967 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 68777188 68777188 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_182606 exon10 c.C1138A p.L380M CTTTCAGATCCCT . 52 5 41 0 . . WNK1 65125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 966367 966367 + Missense_Mutation SNP A A G novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_001184985 exon5 c.A1352G p.E451G TTCCTGAAGTGAA . 131 49 100 0 . . KRT1 3848 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 53070970 53070970 + Splice_Site SNP T T G novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_006121 exon7 c.1129-2A>C . TCATACTAAAGAT . 52 19 22 0 . . MED12L 116931 hgsc.bcm.edu;bcgsc.ca 37 3 150876586 150876586 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_053002 exon6 c.G837T p.Q279H GCTGCAGGTATAG . 117 5 41 0 . . KCNH3 23416 hgsc.bcm.edu 37 12 49935525 49935525 + Silent SNP C C T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e KCNH3,NS,carcinoma,+2,1 KCNH3 NM_012284 exon3 c.C423T p.G141G AGGGGGCCCCGAC . 68 3 40 0 . +2 C3orf52 79669 hgsc.bcm.edu 37 3 111828389 111828389 + Splice_Site SNP G G A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_024616 exon4 c.397-1G>A . TGTTTAGCTCACA . 119 5 41 0 . . OR1B1 347169 hgsc.bcm.edu 37 9 125391702 125391702 + Missense_Mutation SNP A A C novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e OR1B1,NS,lymphoid_neoplasm,0,1 OR1B1 NM_001004450 exon1 c.T113G p.L38R GTGGTCAGGTAAA . 41 2 24 0 . 0 ALS2 57679 hgsc.bcm.edu 37 2 202593249 202593249 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_020919 exon15 c.C2827A p.L943M GGACCAGGGCATC . 72 3 34 0 . . DDHD2 23259 hgsc.bcm.edu 37 8 38117622 38117622 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e DDHD2,colon,carcinoma,0,2 DDHD2 NM_001164232 exon17 c.G2119T p.D707Y TTCCTTGATCAGC . 49 2 31 0 . 0 DNAJC28 54943 hgsc.bcm.edu 37 21 34860754 34860754 + Nonsense_Mutation SNP A A C novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e DNAJC28,NS,carcinoma,0,2 DNAJC28 NM_001040192 exon2 c.T947G p.L316X ACAATTAAATTAA . 91 4 47 0 . 0 ANKRD18DP 348840 hgsc.bcm.edu 37 3 197794345 197794345 + RNA SNP C C A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . AACTTTCGTTCTT . 44 4 22 0 . . ZNF729 100287226 hgsc.bcm.edu 37 19 22487565 22487565 + Missense_Mutation SNP A A T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_001242680 exon3 c.A233T p.E78V GACATGAGATGGT . 57 5 73 0 . . SGOL2 151246 hgsc.bcm.edu 37 2 201407335 201407335 + Nonsense_Mutation SNP A A T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_001160046 exon5 c.A421T p.K141X GCTAGCAAGAAGA . 83 4 42 0 . . TIGD4 201798 hgsc.bcm.edu 37 4 153691681 153691681 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e TIGD4,colon,carcinoma,+1,3 TIGD4 NM_145720 exon2 c.C476A p.S159X ACAGTCGAAGGGT . 46 2 11 0 . +1 PTTG1IP 754 hgsc.bcm.edu 37 21 46271541 46271541 + Silent SNP G G A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e PTTG1IP_ENST00000445724,NS,carcinoma,0,2 PTTG1IP_ENST00000445724 NM_004339 exon6 c.C498T p.G166G AAACAGGCCTGAA . 74 3 48 1 . 0 SAA3P 6290 hgsc.bcm.edu 37 11 18134347 18134347 + RNA SNP C C A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . AGTGAGCAACAGC . 32 13 29 0 . . C6orf203 51250 hgsc.bcm.edu 37 6 107361230 107361230 + Missense_Mutation SNP G G T rs373305216 alternate_allele TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e C6orf203,caecum,carcinoma,0,1 C6orf203 NM_001142470 exon3 c.G281T p.R94M ATATAAGGTCTAC . 35 2 48 0 . 0 MGAT1 4245 hgsc.bcm.edu;bcgsc.ca 37 5 180219933 180219933 + Silent SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_001114617 exon3 c.C39A p.G13G GATAGCGCCCCAC . 51 4 35 0 . . MIR558 693143 hgsc.bcm.edu 37 2 32757240 32757240 + RNA SNP T T G rs199863671 TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . GTGTGGTTATTTT . 73 6 33 0 . . TOP2B 7155 hgsc.bcm.edu 37 3 25675377 25675377 + Silent SNP T T C novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e TOP2B,right_upper_lobe,carcinoma,0,1 TOP2B NM_001068 exon8 c.A966G p.K322K GAATCCTTTTTCA . 49 2 63 0 . 0 ZCCHC3 85364 hgsc.bcm.edu 37 20 278688 278688 + Missense_Mutation SNP C C A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e .,4 . NM_033089 exon1 c.C461A p.P154Q ATGAGCCGGCGGC . 15 2 10 0 . 20 FAT1 2195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 4 187542176 187542176 + Missense_Mutation SNP G G A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_005245 exon10 c.C5564T p.P1855L AAACGTGGGGTTC . 20 15 12 0 . . PRPF18 8559 hgsc.bcm.edu 37 10 13629126 13629126 + Silent SNP C C T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_003675 exon1 c.C40T p.L14L CGGCAGCTGGTGG . 95 3 66 0 . . HDGFRP2 0 hgsc.bcm.edu 37 19 4493798 4493798 + Silent SNP T T C novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e .,1 . NM_032631 exon7 c.T777C p.S259S CTCCTCTTCCTCC . 59 3 30 0 . . PKD1L1 168507 hgsc.bcm.edu 37 7 47894505 47894505 + Missense_Mutation SNP C C T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_138295 exon30 c.G4834A p.A1612T GAAATGCCCTTGT . 92 4 31 0 . . GOLPH3L 55204 hgsc.bcm.edu 37 1 150667291 150667291 + Silent SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_018178 exon2 c.C24A p.A8A GCGACGGGCCCGG . 76 4 47 0 . . MYO9A 4649 hgsc.bcm.edu 37 15 72338441 72338441 + Missense_Mutation SNP G G A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_006901 exon2 c.C464T p.P155L AAATCAGGTAAAC . 95 4 44 0 . . SRFBP1 153443 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 121362644 121362644 + Silent SNP A A T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_152546 exon8 c.A1113T p.P371P TTTTCCACAGAAT . 61 29 34 0 . . UHRF1BP1 54887 hgsc.bcm.edu 37 6 34803196 34803196 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_017754 exon7 c.G795T p.E265D CATGGAGAAGTCA . 45 4 24 0 . . MIR548F1 100302192 hgsc.bcm.edu 37 1 186075931 186075931 + RNA SNP A A C novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . GGGGTTATTTACA . 24 8 14 0 . . AKAP11 11215 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 13 42873939 42873939 + Missense_Mutation SNP A A C novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_016248 exon8 c.A1057C p.S353R GAAGTAAGTGAAT . 86 49 55 0 . . ACOX1 51 hgsc.bcm.edu 37 17 73944443 73944443 + Missense_Mutation SNP A A T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_007292 exon13 c.T1824A p.D608E AAATGCATCAACC . 94 4 40 0 . . NAV1 89796 hgsc.bcm.edu 37 1 201709171 201709171 + Missense_Mutation SNP C C A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_001167738 exon1 c.C20A p.P7H CCCTGCCCAGATC . 93 4 106 0 . . BPIFB4 149954 hgsc.bcm.edu 37 20 31685468 31685468 + Nonsense_Mutation SNP C C T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e C20orf186,scalp,carcinoma,0,1 C20orf186 NM_182519 exon11 c.C1444T p.Q482X AGGATCCAGGTGC . 38 2 7 0 . 0 ACO2 50 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 41911822 41911822 + Missense_Mutation SNP G G A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . NM_001098 exon6 c.G736A p.D246N CCCAAAGATGTGA . 60 14 39 0 . . . 9181 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 155952897 155952897 + Splice_Site SNP C C T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . CTCCTACCTTGGC . 43 17 19 0 . . CLCNKB 1188 broad.mit.edu 37 1 16383402 16383402 + Silent SNP C C T rs6698427 bycluster TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . CLCNKB NM_000085 exon20 c.C2055T p.A685A GCCAGCCCCAAAG . 111 4 102 0 . 50 FAT3 120114 broad.mit.edu 37 11 92532860 92532860 + Silent SNP T T C novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e FAT3_ENST00000409404,NS,carcinoma,+1,2 FAT3 NM_001008781 exon9 c.T6681C p.P2227P GGACCCTTTTAAA . 50 4 44 0 . 1822 SAP18 10284 broad.mit.edu 37 13 21714709 21714709 + Silent SNP C C T rs368287644 TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . SAP18 NM_005870 exon1 c.C18T p.V6V AGGGGTCGGAGGT . 15 4 21 0 . 12 OTX2-AS1 0 broad.mit.edu 37 14 57280005 57280005 + RNA DEL T T - rs375495685 bycluster TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . GGGGGGTGAAAGA . 7 3 4 0 . . . 0 broad.mit.edu 37 14 20098927 20098927 + RNA DEL A A - rs373530853 TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . TGGGAGAAAAAAA . 90 5 79 3 . . CDAN1 146059 broad.mit.edu 37 15 43028860 43028860 + Frame_Shift_Del DEL G G - novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . CDAN1 NM_138477 exon2 c.209delC p.P70fs GGGGTCGGGGGCC . 9 3 6 0 . 70 . 0 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 28975450 28975450 + RNA SNP A A G novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . GAACAGACAAACC . 47 7 33 0 . . TP53 7157 broad.mit.edu;bcgsc.ca 37 17 7577554 7577573 + Frame_Shift_Del DEL TGCAGGAACTGTTACACATG TGCAGGAACTGTTACACATG - novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e TP53,NS,carcinoma,0,28 TP53 NM_000546 exon7 c.708_727del p.236_243del CGCCCATGCAGGA . 17 7 28 0 . 33396 . 0 broad.mit.edu 37 19 19944580 19944580 + RNA DEL T T - rs200238177 TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . TTAATCTTTTTTT . 21 6 9 0 . . LOC728323 0 broad.mit.edu 37 2 243072696 243072696 + RNA DEL T T - rs377762947 TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . ACAATATATATTA . 8 3 4 0 . . HOXD4 3233 broad.mit.edu 37 2 177016418 177016418 + Silent SNP G G T rs376860683 alternate_allele TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . HOXD4 NM_014621 exon1 c.G57T p.P19P CCCTCCGTGCGAG . 140 5 102 0 . 32 HOXD8 0 broad.mit.edu 37 2 176993750 176993750 + RNA SNP T T C novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . HOXD8 . . . . GAGCCCTTTTTCC . 52 3 41 0 . 24 STON1-GTF2A1L 0 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 48896871 48896871 + Missense_Mutation SNP C C T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . STON1-GTF2A1L NM_001198593 exon9 c.C3101T p.S1034F CTAATTCTCAGGT . 95 42 56 1 . 180 CYP21A2 0 broad.mit.edu 37 6 31975463 31975463 + RNA SNP T T C rs370433041 TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . CYP21A2 . . . . CGACTGTAGGAGG . 59 4 59 0 . 42 RREB1 6239 broad.mit.edu;bcgsc.ca 37 6 7189542 7189542 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . RREB1 NM_001003700 exon6 c.G412T p.G138W ACCAATGGGAACA . 14 7 19 0 . 242 DPY19L2P1 0 broad.mit.edu 37 7 35131480 35131480 + RNA SNP A A T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . TCGTAAAGTGGAT . 156 11 60 1 . . PEX1 5189 broad.mit.edu 37 7 92146721 92146721 + Frame_Shift_Del DEL T T - rs61750406 bycluster TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . PEX1 NM_000466 exon5 c.1108delA p.I370fs ACCTAATTTTTTT . 136 7 41 0 . 102 ADCK5 203054 broad.mit.edu 37 8 145617535 145617549 + Splice_Site DEL GGGGGTGCAAGGTGA GGGGGTGCAAGGTGA - rs11270020 TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . ADCK5 NM_174922 exon12 c.1257_1267del p.419_423del CGCACTGGGGGTG . 6 2 4 0 . 36 PXDNL 137902 broad.mit.edu;ucsc.edu 37 8 52321348 52321348 + Nonsense_Mutation SNP G G A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e PXDNL_ENST00000356297,NS,carcinoma,0,6 PXDNL NM_144651 exon17 c.C2836T p.R946X CCTGTCGCGCGCA . 18 4 10 0 . 414 KDM4C 23081 broad.mit.edu 37 9 7170012 7170012 + Missense_Mutation SNP G G T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . KDM4C NM_001146694 exon21 c.G3116T p.C1039F GCCAATGCAACAT . 104 4 58 0 . 186 PLXNA3 55558 broad.mit.edu 37 X 153688565 153688565 + Frame_Shift_Del DEL G G - novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . PLXNA3 NM_017514 exon2 c.42delG p.V14fs TGCCGTGGGGGGG . 9 3 6 0 . 156 HNRNPCL1 343069 ucsc.edu;bcgsc.ca 37 1 12907358 12907358 + Missense_Mutation SNP T T C rs74587302 bycluster TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 T T Unknown Untested Somatic WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e HNRNPCL1,NS,neuroblastoma,0,1 HNRNPCL1 NM_001013631 exon2 c.A785G p.Q262R TCCCCCTGATCTT . 62 10 49 0 . 68 OR2T12 127064 ucsc.edu 37 1 248458419 248458419 + Silent SNP G G C rs35294053 bycluster TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . OR2T12 NM_001004692 exon1 c.C462G p.G154G CAGGAGGCCGTCA . 39 7 22 0 G|0.833;C|0.167 113 ALPP 250 ucsc.edu 37 2 233246249 233246249 + Missense_Mutation SNP A A G rs1048994 bycluster TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 A A Unknown Untested Somatic WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . ALPP NM_001632 exon11 c.A1352G p.E451G TGGACGAAGAGAC . 65 13 52 2 A|1.000;|0.000 53 DSPP 1834 ucsc.edu;bcgsc.ca 37 4 88537327 88537327 + Silent SNP C C T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C Unknown Untested Somatic WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e DSPP,colon,carcinoma,+1,1 DSPP NM_014208 exon5 c.C3513T p.S1171S CGACAGCAGCGAT . 34 4 42 0 . 174 TRAF4 9618 ucsc.edu 37 17 27075650 27075650 + Missense_Mutation SNP T T C novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 T T Unknown Untested Somatic WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . TRAF4 NM_004295 exon6 c.T746C p.L249P TGGTGCTCTGCCC . 41 4 13 0 . 20 KRTAP9-9 81870 ucsc.edu 37 17 39412093 39412093 + Silent SNP C C A rs368292401 alternate_allele TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C C Unknown Untested Somatic WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . KRTAP9-9 NM_030975 exon1 c.C456A p.T152T CAGGACCACTTGC . 147 16 53 2 . 24 PLXNB1 5364 bcgsc.ca 37 3 48461494 48461494 + Missense_Mutation SNP C A A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . PLXNB1 NM_001130082 exon11 c.G2201T p.S734I CAGGGGCTGAGCA . 43 4 42 0 . 150 . 644063 bcgsc.ca 37 3 96069164 96069164 + RNA SNP C T T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . CCCATGCGGGGAA . 91 5 56 0 . . SEC24B 10427 bcgsc.ca 37 4 110453888 110453888 + Missense_Mutation SNP G T T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . SEC24B NM_006323 exon21 c.G3484T p.D1162Y CTTATGGACTGTG . 24 3 38 0 . 186 ZDHHC11 79844 bcgsc.ca 37 5 825293 825293 + Missense_Mutation SNP C T T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . ZDHHC11 NM_024786 exon8 c.G1009A p.D337N TCGAATCCCCATC . 34 4 33 0 . 97 . 0 bcgsc.ca 37 5 110283910 110283910 + RNA SNP T C C rs80293008 bycluster TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . TTTTGGTCTAATA . 37 8 26 1 . . . 0 bcgsc.ca 37 5 110283912 110283912 + RNA SNP T C C rs74826826 bycluster TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . TTGGTCTAATAAT . 38 7 23 1 . . . 0 bcgsc.ca 37 5 110283938 110283938 + RNA SNP A G G novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . TCTGTCATGATGC . 40 8 22 1 . . . 0 bcgsc.ca 37 5 110283940 110283940 + RNA SNP G C C novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . TGTCATGATGCAA . 39 7 21 1 . . . 0 bcgsc.ca 37 5 110283944 110283944 + RNA SNP C A A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . ATGATGCAAGAAA . 37 7 19 0 . . MUC2 4583 bcgsc.ca 37 11 1092843 1092843 + Silent SNP C G G novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e MUC2_ENST00000441003,trunk,malignant_melanoma,+1,2 MUC2 NM_002457 exon30 c.C4662G p.G1554G CACCGGCACACAG . 375 12 238 1 . 614 MUC2 4583 bcgsc.ca 37 11 1092890 1092890 + Missense_Mutation SNP C T T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e MUC2_ENST00000441003,NS,carcinoma,-1,2 MUC2 NM_002457 exon30 c.C4709T p.T1570I CGGTGACCCCAAC . 589 17 405 2 . 614 ME3 10873 bcgsc.ca 37 11 86157510 86157510 + Missense_Mutation SNP C A A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . ME3 NM_006680 exon13 c.G1400T p.S467I CTTCCACTGGCAA . 18 3 39 0 . 70 DGKA 1606 bcgsc.ca 37 12 56347156 56347156 + Missense_Mutation SNP C A A novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . DGKA NM_201554 exon23 c.C2086A p.Q696K CCCATGCAAATTG . 71 4 31 0 . 70 . 0 bcgsc.ca 37 15 23128413 23128413 + RNA SNP G T T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . CTTTAAGAGTTCA . 187 53 86 0 . . . 0 bcgsc.ca 37 15 102305011 102305011 + RNA SNP T C C rs368196195 TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . CAGGCATAGCGGC . 55 7 34 0 . . MYH2 4620 bcgsc.ca 37 17 10436657 10436657 + Missense_Mutation SNP C T T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . MYH2 NM_017534 exon21 c.G2386A p.A796T ACCTGGCCTGGGT . 57 5 66 0 . 390 MKS1 54903 bcgsc.ca 37 17 56293485 56293485 + Silent SNP G T T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . MKS1 NM_017777 exon4 c.C381A p.T127T AGTGTAGGTAAAG . 142 5 50 0 . 100 FRG1B 284802 bcgsc.ca 37 20 29628263 29628263 + Missense_Mutation SNP A G G novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e FRG1B,NS,carcinoma,0,20 FRG1B . . . . TGCTTTATTAGAT . 727 28 404 6 . 181 FRG1B 284802 bcgsc.ca 37 20 29632707 29632707 + Silent SNP G A A rs6057187 bycluster;by2hit2allele TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e FRG1B,NS,malignant_melanoma,0,4 FRG1B . . . . GCATGAGACGCTT . 387 19 198 6 G|0.500;A|0.500 181 GART 2618 bcgsc.ca 37 21 34889332 34889332 + Missense_Mutation SNP G T T novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . GART NM_001136005 exon16 c.C2071A p.P691T CTCTGGGGATGTT . 57 4 36 0 . 81 . 23751 bcgsc.ca 37 22 22578444 22578444 + RNA SNP G C C rs75673893 bycluster TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e . . . . . . CTCCCGGGGCAGC . 25 11 21 0 G|0.500;C|0.500 . TMEM132D 121256 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 130184567 130184568 + Missense_Mutation DNP TG TG CC novel TCGA-W5-AA2O-01A-11D-A417-09 TCGA-W5-AA2O-10A-01D-A41A-09 TG TG . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 61057f6c-7608-4c67-8381-6df68fe11d37 3ff81ee1-202a-49fd-b64b-7ad86894fc5e TMEM132D,right_lower_lobe,carcinoma,0,1 TMEM132D NM_133448 exon2 c.C755G p.T252R TGGCCTGTCCGGA . 40 13 30 0 . 0