Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL NTotCov_SOL NVarCov_SOL dbSNPPopFreq COSMIC_Gene_Freq ALB 213 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 74279212 74279212 + Frame_Shift_Del DEL C C - novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_000477 exon8 c.918delT p.P306fs AAACCTCTGTTGG . 89 42 90 0 . . IL32 9235 hgsc.bcm.edu 37 16 3119299 3119300 + Frame_Shift_Ins INS - - C novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 - - . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_004221 exon7 c.510_511insC p.R170fs CCCACGGGGGGAC . 103 21 81 0 . . ZNF233 353355 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 44777811 44777812 + Frame_Shift_Del DEL AG AG - novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 AG AG . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_001207005 exon5 c.997_998del p.333_333del CTCATCAGAGAGT . 30 11 34 0 . . PBRM1 55193 hgsc.bcm.edu 37 3 52621438 52621439 + In_Frame_Ins INS - - AAT novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 - - . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca .,1 . NM_018313 exon20 c.2979_2980insATT p.F993delinsLF ACTCTTAAAAACT . 45 27 76 0 . 1252 HHLA2 11148 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 108072349 108072349 + Frame_Shift_Del DEL T T - novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_007072 exon4 c.139delA p.I47X AAGATATAATTCT . 73 23 77 0 . . RBM26 64062 hgsc.bcm.edu 37 13 79918911 79918911 + Missense_Mutation SNP C C T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca RBM26_ENST00000327303,trunk,malignant_melanoma,0,2 RBM26_ENST00000327303 NM_022118 exon14 c.G1996A p.G666S TTAGGCCAGTAGA . 41 3 66 0 . 0 KCNQ3 3786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 133153423 133153423 + Missense_Mutation SNP C C T rs138181943 TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_004519 exon10 c.G1418A p.R473H GCCGTGCGGAAAC . 35 13 44 0 0.000 . BANK1 55024 hgsc.bcm.edu 37 4 102816512 102816512 + Missense_Mutation SNP G G T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca BANK1,NS,carcinoma,0,1 BANK1 NM_017935 exon6 c.G954T p.E318D ACATGAGATACCA . 59 3 66 0 . 0 TRIP12 9320 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 230672523 230672523 + Missense_Mutation SNP C C G novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_004238 exon16 c.G2253C p.K751N TCCCTTCTTCAAC . 42 12 29 0 . . UCKL1 54963 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 62577877 62577877 + Missense_Mutation SNP G G A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_017859 exon2 c.C233T p.T78I TAGATGGTACGCT . 47 9 48 0 . . PKHD1L1 93035 hgsc.bcm.edu 37 8 110457602 110457602 + Missense_Mutation SNP C C A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca PKHD1L1,NS,carcinoma,0,1 PKHD1L1 NM_177531 exon38 c.C5504A p.S1835Y TAGCATCTCTATC . 35 2 32 0 . 0 RBL2 5934 hgsc.bcm.edu 37 16 53513070 53513070 + Missense_Mutation SNP C C A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca RBL2,NS,carcinoma,0,1 RBL2 NM_005611 exon18 c.C2708A p.T903K AGGTCACAAAAGA . 22 2 21 0 . 0 MIR941-3 100126352 hgsc.bcm.edu 37 20 62551131 62551131 + RNA SNP G G A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca ENSG00000101152,right_lower_lobe,carcinoma,0,1 ENSG00000101152 . . . . GGGCCCGGGACAG . 49 3 29 1 . 0 PRG4 10216 hgsc.bcm.edu 37 1 186276306 186276306 + Silent SNP T T C rs78867190 bycluster TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca PRG4,NS,carcinoma,0,1 PRG4 NM_005807 exon7 c.T1455C p.T485T ACCCACTGCCCCC . 86 4 77 1 . 0 RIOK2 55781 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 96504525 96504525 + Missense_Mutation SNP C C A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_001159749 exon7 c.G811T p.D271Y AGAAATCTTTAAT . 96 39 87 0 . . EPRS 2058 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 220151958 220151958 + Missense_Mutation SNP T T A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_004446 exon28 c.A4013T p.N1338I CGGATGTTAACAC . 43 15 58 0 . . MUM1 84939 hgsc.bcm.edu 37 19 1360675 1360675 + Missense_Mutation SNP C C T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca MUM1,NS,malignant_melanoma,0,1 MUM1 NM_032853 exon5 c.C758T p.A253V GGGCAGCCCCGTC . 48 3 24 0 . 0 SPATA4 132851 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 177114178 177114178 + Missense_Mutation SNP G G A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_144644 exon3 c.C398T p.T133I TGAATTGTTCCAT . 66 22 121 0 . . KIAA1199 57214 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 81212524 81212524 + Silent SNP T T A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_018689 exon14 c.T1887A p.L629L CTGTCTTGGCCTC . 49 4 39 0 . . TAS2R31 259290 hgsc.bcm.edu;broad.mit.edu 37 12 11183199 11183199 + Missense_Mutation SNP T T G novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_176885 exon1 c.A736C p.M246L ATATCATTATGGA . 96 4 117 0 . . RNF180 285671 hgsc.bcm.edu;bcgsc.ca 37 5 63621158 63621158 + Missense_Mutation SNP G G T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_001113561 exon6 c.G1373T p.R458L GCTTACGGACTCT . 82 4 77 0 . . RNR2 6053 hgsc.bcm.edu;broad.mit.edu 37 MT 3003 3003 + RNA SNP A A G rs28597879 bycluster TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . . . . . ATCAGGACATCCC . 66 51 21 0 . . TJP1 7082 hgsc.bcm.edu;bcgsc.ca 37 15 30011982 30011982 + Missense_Mutation SNP T T G novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_003257 exon20 c.A3002C p.K1001T GGTACCTTTGTTG . 50 4 41 0 . . KIAA1614 57710 hgsc.bcm.edu 37 1 180886014 180886014 + Missense_Mutation SNP C C A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca KIAA1614,NS,carcinoma,0,1 KIAA1614 NM_020950 exon2 c.C775A p.L259M ACATCCCTGACCT . 40 2 27 0 . 0 TDRD6 221400 hgsc.bcm.edu 37 6 46657979 46657979 + Missense_Mutation SNP A A G rs199792181 TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca .,2 . NM_001168359 exon1 c.A2114G p.E705G CTGGAGAAGGAGA . 35 3 42 1 . 205 COX2 5743 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 MT 7854 7854 + Missense_Mutation SNP T T C rs199751156 bycluster;alternate_allele TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . ENST00000361739 exon1 c.T269C p.V90A ACGAGGTCAACGA . 572 487 201 0 . . PEPD 5184 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 33953903 33953903 + Missense_Mutation SNP T T G novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_000285 exon9 c.A669C p.E223D TTACCTTTCCAAC . 49 20 72 0 . . MUC5B 727897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 1273681 1273681 + Missense_Mutation SNP C C T rs377111871 TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_002458 exon32 c.C14972T p.P4991L CCCCACCGCCAGT . 48 18 44 0 . . MLL3 58508 hgsc.bcm.edu 37 7 151921114 151921114 + Nonsense_Mutation SNP A A T rs4024337 TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca MLL3_ENST00000355193,NS,carcinoma,0,10 MLL3_ENST00000355193 NM_170606 exon20 c.T3309A p.C1103X TTGTCTACATTGC . 103 6 88 2 . 0 EPHA2 1969 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 16451813 16451813 + Missense_Mutation SNP T T A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_004431 exon17 c.A2828T p.D943V TTGATGTCGCTGT . 30 18 37 0 . . MUC21 394263 hgsc.bcm.edu 37 6 30954618 30954618 + Silent SNP T T C novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca MUC21,rectum,carcinoma,0,2 MUC21 NM_001010909 exon2 c.T666C p.A222A TGGGGCTGGCACA . 73 4 78 1 . 0 S1PR5 53637 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 10624541 10624541 + Missense_Mutation SNP C C T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_030760 exon2 c.G1147A p.G383S GTGCACCGGGGCT . 30 5 27 0 . . PKD2L1 9033 hgsc.bcm.edu 37 10 102059361 102059361 + Missense_Mutation SNP G G T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca PKD2L1,colon,carcinoma,0,1 PKD2L1 NM_016112 exon3 c.C464A p.A155E AAGTCCGCCATGC . 37 2 53 0 . 0 TTC28-AS1 284900 hgsc.bcm.edu 37 22 28385466 28385466 + RNA SNP C C T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . . . . . ACAAAGCCATTTG . 13 4 32 0 . . MUC5B 727897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 1256439 1256439 + Missense_Mutation SNP T T G novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_002458 exon22 c.T2755G p.Y919D TGCGAGTACATCT . 42 13 33 0 . . SLC24A2 25769 hgsc.bcm.edu;bcgsc.ca 37 9 19786216 19786216 + Missense_Mutation SNP G G T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_001193288 exon1 c.C649A p.L217I CAAAGAGGATGTT . 34 4 53 0 . . UBR1 197131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 43244513 43244513 + Missense_Mutation SNP C C T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_174916 exon45 c.G4969A p.A1657T GAAGTGCGTGAAA . 36 11 31 0 . . DNA2 1763 hgsc.bcm.edu 37 10 70209804 70209804 + Missense_Mutation SNP G G T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca DNA2L,NS,carcinoma,0,2 DNA2L NM_001080449 exon6 c.C920A p.S307Y TCAATAGAATTTG . 32 2 72 0 . 0 CD300C 10871 hgsc.bcm.edu 37 17 72540765 72540765 + Missense_Mutation SNP T T A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca CD300C,caecum,carcinoma,0,1 CD300C NM_006678 exon2 c.A383T p.E128V GACACCTCAACCT . 67 3 58 0 . 0 MUC4 4585 hgsc.bcm.edu 37 3 195508971 195508971 + Silent SNP T T C novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca MUC4_ENST00000463781,NS,carcinoma,0,1 MUC4_ENST00000463781 NM_018406 exon2 c.A9480G p.S3160S GGATGCTGAGGAA . 83 6 87 1 . 0 ACIN1 22985 hgsc.bcm.edu 37 14 23540342 23540342 + Missense_Mutation SNP G G T rs111237085 alternate_allele TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_001164817 exon2 c.C15A p.S5R TTCTTTGCTTTCT . 77 3 62 0 . . TRPC6 7225 hgsc.bcm.edu 37 11 101343020 101343020 + Missense_Mutation SNP G G T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca TRPC6,colon,carcinoma,0,1 TRPC6 NM_004621 exon8 c.C2053A p.L685I CAGAAAGTCCAAA . 50 2 48 0 . 0 RNF208 727800 hgsc.bcm.edu;broad.mit.edu 37 9 140114946 140114946 + Missense_Mutation SNP C C A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_031297 exon1 c.G719T p.R240L TACTGCCGGAAGG . 7 5 8 0 . . RPS6KC1 26750 hgsc.bcm.edu 37 1 213415426 213415426 + Missense_Mutation SNP G G T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca RPS6KC1,NS,carcinoma,0,1 RPS6KC1 NM_012424 exon11 c.G2607T p.K869N GACTAAGGGTGAA . 48 2 41 0 . 0 FOXO3 2309 hgsc.bcm.edu 37 6 108985269 108985269 + Silent SNP C C T rs34079373 TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca FOXO3,NS,carcinoma,0,1 FOXO3 NM_001455 exon2 c.C1233T p.S411S GCGGAGCTCTAGC . 25 2 41 1 . 0 SNED1 25992 hgsc.bcm.edu 37 2 241976736 241976736 + Silent SNP C C T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_001080437 exon6 c.C1011T p.C337C CCAGTGCCCGGCT . 82 4 68 0 . . R3HCC1L 27291 hgsc.bcm.edu 37 10 99968068 99968068 + Missense_Mutation SNP C C A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca C10orf28,NS,carcinoma,0,1 C10orf28 NM_001256620 exon4 c.C197A p.P66Q ACAAACCGGAGGC . 43 2 59 0 . 0 WDR7 23335 hgsc.bcm.edu 37 18 54424284 54424284 + Silent SNP C C T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca WDR7,NS,carcinoma,0,1 WDR7 NM_052834 exon15 c.C2460T p.C820C AGTTTGCCTGGAT . 48 2 52 0 . 0 C2orf16 84226 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 2 27799950 27799950 + Missense_Mutation SNP G G T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_032266 exon1 c.G511T p.G171C TATAAAGGCATAG . 42 4 59 0 . . LPHN3 23284 hgsc.bcm.edu 37 4 62845391 62845391 + Silent SNP G G T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca LPHN3_ENST00000514591,right_upper_lobe,carcinoma,0,3 LPHN3_ENST00000514591 NM_015236 exon15 c.G2712T p.G904G CCGGGGGCTCCAG . 48 2 52 0 . 0 DPP4 1803 hgsc.bcm.edu 37 2 162875264 162875264 + Silent SNP C C A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca DPP4,NS,carcinoma,-1,2 DPP4 NM_001935 exon16 c.G1395T p.A465A ATACTTCGCCTCT . 30 2 34 0 . -1 HSF5 124535 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 56540279 56540279 + Missense_Mutation SNP G G A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_001080439 exon4 c.C1406T p.P469L TCAACAGGCTGAG . 49 22 35 0 . . PIGR 5284 hgsc.bcm.edu 37 1 207107996 207107996 + Nonsense_Mutation SNP C C A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca PIGR,NS,carcinoma,0,2 PIGR NM_002644 exon6 c.G1474T p.E492X ATTTCTCGTACGA . 35 2 16 0 . 0 TRIP13 9319 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 5 908545 908545 + Missense_Mutation SNP G G A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_004237 exon9 c.G835A p.A279T GTCAATGCTGTCT . 35 4 35 0 . . CABYR 26256 hgsc.bcm.edu 37 18 21736349 21736349 + Missense_Mutation SNP C C A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca CABYR,NS,carcinoma,0,1 CABYR NM_012189 exon4 c.C884A p.S295Y TATCATCTGTCTA . 46 2 49 0 . 0 NEUROD1 4760 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 182542721 182542721 + Silent SNP C C T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_002500 exon2 c.G867A p.P289P GGCGGACGGTTCG . 22 5 29 0 . . TRAP1 10131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 3729751 3729751 + Missense_Mutation SNP T T C novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_016292 exon5 c.A512G p.N171S CCCAGGTTGGACA . 32 11 22 0 . . ZNF728 388523 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 23170160 23170160 + Missense_Mutation SNP C C T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_001267716 exon3 c.G176A p.G59E TCTTTTCCTTGCT . 86 24 98 0 . . SMARCAL1 50485 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 217315693 217315693 + Missense_Mutation SNP G G A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_014140 exon12 c.G1976A p.R659H AGCAGCGCAAGAT . 28 11 18 0 . . KLHL11 55175 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 40010293 40010293 + Missense_Mutation SNP T T C novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_018143 exon2 c.A1826G p.D609G ACATCATCTTTGT . 46 21 58 0 . . DMBT1 1755 hgsc.bcm.edu 37 10 124390549 124390549 + Missense_Mutation SNP G G T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca DMBT1_ENST00000368915,NS,carcinoma,0,1 DMBT1_ENST00000368915 NM_007329 exon46 c.G5711T p.G1904V ACCATGGTGGCAC . 66 3 99 1 . 0 MUC21 394263 hgsc.bcm.edu 37 6 30954918 30954918 + Silent SNP A A G rs79264512 TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca MUC21,NS,carcinoma,0,1 MUC21 NM_001010909 exon2 c.A966G p.T322T CAGCACAACCTCC . 56 6 48 1 . 0 PDXDC2P 283970 hgsc.bcm.edu 37 16 70013392 70013392 + RNA SNP C C A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . . . . . ATGCCCCCTGCAA . 58 4 85 0 . . OR4Q3 441669 hgsc.bcm.edu 37 14 20216038 20216038 + Missense_Mutation SNP G G T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca OR4Q3,NS,carcinoma,0,1 OR4Q3 NM_172194 exon1 c.G452T p.C151F GCTGGTGTGGGGG . 71 3 78 0 . 0 IDE 3416 hgsc.bcm.edu 37 10 94228698 94228698 + Missense_Mutation SNP G G A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca IDE,colon,carcinoma,0,1 IDE NM_004969 exon19 c.C2258T p.A753V GTATGAGCATGTT . 47 2 45 0 . 0 PKNOX2 63876 hgsc.bcm.edu 37 11 125280125 125280125 + Nonsense_Mutation SNP G G T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca PKNOX2,larynx,carcinoma,0,1 PKNOX2 NM_022062 exon8 c.G622T p.G208X ATGTCCGGAGTCT . 22 2 23 0 . 0 CST13P 164380 hgsc.bcm.edu;bcgsc.ca 37 20 23514887 23514887 + RNA SNP G G A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . . . . . CAATTTGCAAGAA . 83 4 82 0 . . KANK1 23189 hgsc.bcm.edu 37 9 732477 732477 + Silent SNP G G A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca KANK1_ENST00000382303,NS,carcinoma,0,4 KANK1_ENST00000382303 NM_001256876 exon10 c.G3105A p.E1035E AGAAGAGGAGGAG . 55 3 51 1 . 0 ATP7B 540 hgsc.bcm.edu 37 13 52549277 52549277 + Missense_Mutation SNP G G T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca ATP7B,NS,carcinoma,0,1 ATP7B NM_001243182 exon2 c.C79A p.R27S AGGCACGGGTAGG . 31 2 31 0 . 0 DLK1 8788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 101201136 101201136 + Missense_Mutation SNP A A C novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_003836 exon5 c.A1055C p.Q352P TGCTTCAGTACAA . 17 9 25 0 . . DMD 1756 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 32361350 32361350 + Nonsense_Mutation SNP A A T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_004006 exon40 c.T5640A p.Y1880X GTACTGATACCAC . 17 13 23 0 . . LRTM2 654429 hgsc.bcm.edu 37 12 1943445 1943445 + Missense_Mutation SNP A A G novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_001039029 exon5 c.A671G p.D224G GCTTGGACCAGCT . 92 2 37 0 . . ADCY10 55811 hgsc.bcm.edu 37 1 167780114 167780114 + Missense_Mutation SNP G G T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca ADCY10,NS,carcinoma,0,1 ADCY10 NM_018417 exon32 c.C4519A p.P1507T AGACAGGGCCAGT . 52 3 68 0 . 0 CCDC141 285025 hgsc.bcm.edu 37 2 179733971 179733971 + Missense_Mutation SNP G G T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca CCDC141_ENST00000420890,NS,carcinoma,0,2 CCDC141_ENST00000420890 NM_173648 exon15 c.C2267A p.A756D ACAGGGGCTCCTC . 42 2 55 0 . 0 FEZ1 9638 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 125359627 125359627 + Missense_Mutation SNP C C G rs138856048 alternate_allele TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_022549 exon2 c.G47C p.R16P GAGGGTCGAAGGT . 46 22 35 0 . . SP140 11262 hgsc.bcm.edu 37 2 231159016 231159016 + Missense_Mutation SNP C C T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca SP140_ENST00000392045,NS,carcinoma,0,1 SP140_ENST00000392045 NM_007237 exon21 c.C1999T p.R667C AGAATACGTTACA . 68 3 102 0 . 0 ATM 472 hgsc.bcm.edu 37 11 108218091 108218091 + Silent SNP A A G novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca ATM_ENST00000278616,colon,carcinoma,0,6 ATM_ENST00000278616 NM_000051 exon59 c.A8670G p.L2890L AGATCTAGGTAAG . 37 2 30 0 . 0 CEP350 9857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 179983051 179983051 + Missense_Mutation SNP C C T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_014810 exon10 c.C1463T p.S488L GAAACTCAGAACG . 87 29 98 0 . . TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 17 7578509 7578509 + Missense_Mutation SNP A A G novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca TP53_ENST00000545858,NS,carcinoma,+1,28 TP53_ENST00000545858 NM_000546 exon5 c.T421C p.C141R CAGGGCAGGTCTT . 13 8 13 0 . +1 RGS8 85397 hgsc.bcm.edu;bcgsc.ca 37 1 182640815 182640815 + Missense_Mutation SNP C C A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_033345 exon2 c.G57T p.Q19H CATGGCCTGAGGG . 59 4 77 0 . . C19orf26 255057 hgsc.bcm.edu 37 19 1235857 1235857 + Missense_Mutation SNP C C T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_152769 exon3 c.G166A p.V56M CCCCCACGAACAG . 59 4 36 0 . . NKX2-5 1482 hgsc.bcm.edu 37 5 172659642 172659642 + Missense_Mutation SNP G G A rs371380388 alternate_allele TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca NKX2-5,NS,carcinoma,+1,1 NKX2-5 NM_004387 exon2 c.C905T p.A302V TGAACCGCATTCA . 35 2 39 0 . +1 CPD 1362 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 28772983 28772983 + Missense_Mutation SNP T T C novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_001304 exon12 c.T2818C p.S940P GACTTATCAGAGT . 43 16 54 0 . . ZNF441 126068 hgsc.bcm.edu 37 19 11891967 11891967 + Missense_Mutation SNP G G T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca ZNF441_ENST00000357901,NS,carcinoma,0,2 ZNF441_ENST00000357901 NM_152355 exon4 c.G1328T p.G443V ACACTGGGGAGAG . 33 2 57 0 . 0 UBN2 254048 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 138978118 138978118 + Silent SNP C C G novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_173569 exon16 c.C3810G p.P1270P GTTTCCCTTGGAG . 50 16 59 0 . . LSR 51599 hgsc.bcm.edu 37 19 35757268 35757268 + Missense_Mutation SNP C C T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca LSR,NS,carcinoma,0,2 LSR NM_205834 exon6 c.C929T p.A310V TGTATGCCGCCGG . 47 2 41 0 . 0 SPATS2 65244 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 49918486 49918486 + Missense_Mutation SNP A A G novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_023071 exon13 c.A1133G p.Y378C ACAGCTATTCGAC . 16 7 22 0 . . ABCB8 11194 hgsc.bcm.edu 37 7 150733641 150733641 + Missense_Mutation SNP G G T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca .,1 . NM_007188 exon9 c.G1122T p.L374F GGTCTTGGGTACC . 48 2 21 0 . 65 NAV3 89795 hgsc.bcm.edu 37 12 78225326 78225326 + Missense_Mutation SNP C C A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca NAV3,NS,carcinoma,0,1 NAV3 NM_014903 exon1 c.C85A p.L29I CCAAATCTTGGCA . 46 2 32 0 . 0 ACTC1 70 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 35082738 35082738 + Missense_Mutation SNP G G A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_005159 exon7 c.C1009T p.R337C ATTTACGCTCAGG . 49 24 61 0 . . GATA3 2625 hgsc.bcm.edu;bcgsc.ca 37 10 8100409 8100409 + Missense_Mutation SNP G G T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_002051 exon3 c.G383T p.G128V CCCCGGGGCCCCT . 106 5 110 0 . . MAGED1 9500 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 X 51640334 51640334 + Nonsense_Mutation SNP A A T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_001005333 exon6 c.A1621T p.K541X ATGCTTAAGGACT . 16 8 24 0 . . PHYH 5264 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 13337503 13337503 + Missense_Mutation SNP G G A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_006214 exon3 c.C238T p.R80C GAAAGCGTTGAAT . 150 40 132 0 . . UNC13C 440279 hgsc.bcm.edu 37 15 54592537 54592537 + Missense_Mutation SNP C C T rs370227736 TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca UNC13C_ENST00000260323,colon,carcinoma,0,2 UNC13C_ENST00000260323 NM_001080534 exon11 c.C4234T p.R1412C GCTATGCGTTATG . 65 3 82 0 . 0 DCAF4L2 138009 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 88886183 88886183 + Missense_Mutation SNP G G A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca DCAF4L2,NS,carcinoma,0,1 DCAF4L2 NM_152418 exon1 c.C17T p.P6L AGTCGCGGTCTTT . 30 11 30 0 . 0 ETS1 2113 hgsc.bcm.edu 37 11 128350152 128350152 + Missense_Mutation SNP G G A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca ETS1_ENST00000392668,NS,carcinoma,0,2 ETS1_ENST00000392668 NM_001143820 exon8 c.C1057T p.R353W GGTCCCGCACATA . 40 2 32 0 . 0 TECTA 7007 hgsc.bcm.edu 37 11 120979961 120979961 + Silent SNP C C T rs142064539 TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca TECTA,caecum,carcinoma,0,1 TECTA NM_005422 exon3 c.C240T p.S80S AGTGAGCCAGTTC . 48 2 40 0 0.000 0 BLK 640 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 11412317 11412317 + Missense_Mutation SNP C C T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_001715 exon7 c.C538T p.R180C AAGATCCGCTGCC . 39 16 46 0 . . PCDHB15 56121 hgsc.bcm.edu 37 5 140627110 140627110 + Missense_Mutation SNP C C T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca PCDHB15,NS,carcinoma,+1,1 PCDHB15 NM_018935 exon1 c.C1964T p.T655I CGGCCACCGCCAC . 44 2 53 0 . +1 FAM86DP 692099 hgsc.bcm.edu 37 3 75476590 75476590 + RNA SNP C C G novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca ENSG00000163612,lower_third,carcinoma,0,1 ENSG00000163612 . . . . CAATGACAACATC . 12 3 70 0 . 0 CADM2 253559 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 86010630 86010630 + Missense_Mutation SNP T T C novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_001167675 exon8 c.T803C p.V268A AACCTGTTTTGTG . 41 27 94 0 . . MME 4311 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 154836538 154836538 + Missense_Mutation SNP G G A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_007287 exon8 c.G658A p.D220N TAGATTGACCAAC . 97 36 97 0 . . ZNF691 51058 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 1 43317239 43317239 + Missense_Mutation SNP A A T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_001242739 exon4 c.A703T p.S235C GGGAAGAGCTTCA . 14 4 12 0 . . NF1P2 440225 hgsc.bcm.edu 37 15 21129136 21129136 + RNA SNP T T A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . . . . . TCCGATTCTAGGT . 68 45 65 0 . . SMARCA5 8467 hgsc.bcm.edu 37 4 144460080 144460080 + Missense_Mutation SNP C C A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca SMARCA5,NS,carcinoma,0,1 SMARCA5 NM_003601 exon13 c.C1759A p.L587I GTAGATCTTCAGG . 46 2 40 0 . 0 OR5H6 79295 hgsc.bcm.edu 37 3 97983496 97983496 + Missense_Mutation SNP C C T rs145155372 bycluster TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_001005479 exon1 c.C368T p.T123I TAACCACTGTAAC . 61 4 40 0 . . ZNF525 170958 hgsc.bcm.edu;bcgsc.ca 37 19 53879488 53879488 + RNA SNP T T C novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . . . . . CCCCCGTACCTAA . 87 23 87 0 . . HSH2D 84941 hgsc.bcm.edu 37 19 16268032 16268032 + Missense_Mutation SNP C C T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_032855 exon8 c.C487T p.P163S CCAAAGCCAGTCC . 71 4 70 0 . . KIAA1432 57589 hgsc.bcm.edu;bcgsc.ca 37 9 5745941 5745941 + Missense_Mutation SNP C C A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_001206557 exon11 c.C1106A p.A369E GGGGTGCAGAAGG . 69 4 63 0 . . CEP97 79598 hgsc.bcm.edu;bcgsc.ca 37 3 101451412 101451412 + Silent SNP C C A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_024548 exon6 c.C642A p.I214I ATCCATCCCAGGA . 69 4 69 0 . . LMNB1 4001 hgsc.bcm.edu;bcgsc.ca 37 5 126156635 126156635 + Silent SNP G G T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_005573 exon7 c.G1194T p.V398V CCGTGTGACAGTA . 54 4 60 0 . . FAM71F2 346653 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 128315770 128315770 + Silent SNP T T C novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_001012454 exon2 c.T222C p.S74S AGGGTCTGCCACC . 40 18 31 0 . . CPLX4 339302 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 18 56963944 56963944 + Missense_Mutation SNP A A T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca CPLX4,NS,haematopoietic_neoplasm,0,1 CPLX4 NM_181654 exon3 c.T469A p.C157S CGGAACACTTCTG . 23 4 24 0 . 0 CAPN12 147968 hgsc.bcm.edu 37 19 39234742 39234742 + Missense_Mutation SNP C C T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_144691 exon1 c.G64A p.G22R GGCGCCCGGCTCC . 87 4 69 0 . . PCDHB5 26167 hgsc.bcm.edu 37 5 140517100 140517100 + Nonsense_Mutation SNP C C A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca PCDHB5,face,carcinoma,0,1 PCDHB5 NM_015669 exon1 c.C2084A p.S695X TGGCCTCGGTGTC . 46 2 64 0 . 0 CHI3L1 1116 broad.mit.edu;bcgsc.ca 37 1 203148988 203148988 + Silent SNP G G A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca CHI3L1,colon,carcinoma,-2,1 CHI3L1 NM_001276 exon9 c.C912T p.R304R GGCTCCGCGGAGG . 19 8 24 0 . 51 ROR1 4919 broad.mit.edu 37 1 64603123 64603123 + Missense_Mutation SNP G G A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . ROR1 NM_001083592 exon5 c.G554A p.R185H GCAACCGCACCGT . 51 3 61 0 . 113 CD81 975 broad.mit.edu 37 11 2416708 2416708 + Silent SNP C C T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . CD81 NM_004356 exon5 c.C417T p.D139D TGATGACGCCAAC . 41 3 39 0 . 11 MYEOV 26579 broad.mit.edu 37 11 69063836 69063836 + Missense_Mutation SNP C C A rs147884839 bycluster TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca MYEOV,NS,haematopoietic_neoplasm,0,3 MYEOV NM_138768 exon3 c.C919A p.L307I CTCCTCCTCATCA . 25 3 20 0 C|1.000;A|0.000 42 GABRB3 2562 broad.mit.edu 37 15 26793037 26793037 + Missense_Mutation SNP A A C novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . GABRB3 NM_021912 exon9 c.T1325G p.L442R TCGGTTAGATCAG . 23 3 27 0 . 338 . 0 broad.mit.edu 37 16 74629 74629 + RNA SNP G G A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . . . . . TCATGCGCCATCA . 9 3 10 0 . . ZNF469 84627 broad.mit.edu 37 16 88500278 88500278 + Missense_Mutation SNP G G T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . ZNF469 NM_001127464 exon2 c.G6316T p.D2106Y CGTGAAGACCCAC . 21 3 23 0 . 121 AMZ2P1 0 broad.mit.edu 37 17 62968690 62968690 + RNA SNP A A G novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . . . . . TTCCACAAGTCTC . 95 3 77 0 . . LRRC48 83450 broad.mit.edu 37 17 17907739 17907739 + Silent SNP C C T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . LRRC48 NM_031294 exon10 c.C1062T p.C354C AGAATGCAGTGCT . 42 3 54 0 . 49 TLK2 11011 broad.mit.edu 37 17 60598179 60598179 + Missense_Mutation SNP G G A rs200158456 TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca TLK2_ENST00000346027,NS,carcinoma,0,1 TLK2 NM_001112707 exon3 c.G127A p.G43R AGCGTCGGATCCT . 83 3 71 1 . 223 TRAF4 9618 broad.mit.edu 37 17 27076180 27076180 + Missense_Mutation SNP T T G novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . TRAF4 NM_004295 exon7 c.T998G p.F333C AGTGCTTCAGCCC . 51 3 41 0 . 20 ZNF536 9745 broad.mit.edu 37 19 30934714 30934714 + Missense_Mutation SNP C C T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca ZNF536,NS,carcinoma,-1,1 ZNF536 NM_014717 exon2 c.C245T p.A82V AGATGGCGCTCCT . 65 5 55 0 . 424 SNRNP200 23020 broad.mit.edu 37 2 96961292 96961292 + Silent SNP C C T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . SNRNP200 NM_014014 exon14 c.G1776A p.K592K GTCCCACTTCTCG . 4 2 15 0 . 195 NCOA6 23054 broad.mit.edu 37 20 33345744 33345744 + Silent SNP C C T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca NCOA6,NS,carcinoma,0,18 NCOA6 NM_014071 exon7 c.G807A p.Q269Q CTGCTGCTGTTGT . 33 6 24 2 . 219 RBM15B 29890 broad.mit.edu;bcgsc.ca 37 3 51430852 51430853 + Frame_Shift_Del DEL CT CT - novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . RBM15B NM_013286 exon1 c.2022_2023del p.674_675del TGCAGACTCTTCC . 12 5 22 0 . 47 FBN2 2201 broad.mit.edu 37 5 127624882 127624882 + Nonsense_Mutation SNP C C A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . FBN2 NM_001999 exon52 c.G6574T p.G2192X AAGATCCGTCGGT . 16 4 18 0 . 858 AASS 10157 broad.mit.edu 37 7 121716630 121716630 + Silent SNP G G T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . AASS NM_005763 exon24 c.C2694A p.P898P TGAAAAGGGCCCC . 79 3 70 0 . 123 GTF2IRD2P1 0 broad.mit.edu 37 7 72663998 72663998 + RNA SNP T T G rs2539034 bycluster TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . . . . . CCGGGGTCCTTGA . 29 4 27 0 T|0.500;G|0.500 . GTF2IRD2P1 0 broad.mit.edu 37 7 72664015 72664015 + RNA SNP C C G novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . . . . . CACCCCCGGGGCA . 11 3 15 0 . . PCLO 27445 broad.mit.edu 37 7 82595713 82595713 + Missense_Mutation SNP C C G novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . PCLO NM_014510 exon4 c.G3391C p.G1131R TGGGTCCTGATGG . 23 3 27 0 . 1506 PCDH11X 27328 broad.mit.edu 37 X 91133148 91133148 + Missense_Mutation SNP G G A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . PCDH11X NM_001168363 exon2 c.G1909A p.E637K AAACAAGAATCTT . 46 31 96 1 . 714 . 0 broad.mit.edu 37 Y 7636011 7636011 + RNA DEL A A - novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . . . . . CCATCTAAAAAAA . 6 2 5 0 . . COL6A3 1293 ucsc.edu;bcgsc.ca 37 2 238289918 238289918 + Missense_Mutation SNP G G A rs369379463 alternate_allele TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . COL6A3 NM_004369 exon5 c.C1537T p.R513W TTTTCCGCACAGC . 27 4 20 0 . 608 ZFYVE19 84936 ucsc.edu 37 15 41099910 41099910 + Silent SNP A A G rs62018606 TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 A A Unknown Untested Somatic WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . ZFYVE19 NM_001077268 exon1 c.A123G p.A41A CGGGGCAGGGCAG . 21 7 12 0 . 31 SLC16A11 162515 ucsc.edu;bcgsc.ca 37 17 6946310 6946310 + Missense_Mutation SNP G G T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . SLC16A11 NM_153357 exon2 c.C357A p.F119L GAAGACGAAGCCC . 44 4 47 0 . 25 CDC42EP4 23580 ucsc.edu 37 17 71282351 71282351 + Missense_Mutation SNP G G A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . CDC42EP4 NM_012121 exon2 c.C289T p.R97W GCTCCCGCTCCCC . 41 4 34 0 . 19 CASS4 57091 ucsc.edu 37 20 55033541 55033541 + Missense_Mutation SNP C C T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C C Unknown Untested Somatic WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca CASS4,colon,carcinoma,+1,1 CASS4 NM_020356 exon6 c.C2099T p.A700V AGCCCGCGGAGAT . 39 4 34 0 . 121 CNN3 1266 bcgsc.ca 37 1 95364930 95364930 + Silent SNP G A A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . CNN3 NM_001839 exon6 c.C645T p.S215S TACCTGGCTGGCT . 64 4 56 0 . 23 RASAL2 9462 bcgsc.ca 37 1 178408564 178408564 + Missense_Mutation SNP G A A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . RASAL2 NM_170692 exon6 c.G682A p.G228R TCTCGTGGGCTGC . 27 3 60 0 . 334 . 0 bcgsc.ca 37 1 242220951 242220951 + RNA SNP G A A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . . . . . AGCCGGGCACCCT . 35 5 26 0 . . GPR160 26996 bcgsc.ca 37 3 169802265 169802265 + Missense_Mutation SNP G T T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . GPR160 NM_014373 exon4 c.G505T p.A169S CAGAATGCTTATT . 25 3 27 0 . 26 TRMT10A 93587 bcgsc.ca 37 4 100477351 100477351 + Silent SNP C T T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . NM_001134666 exon5 c.G447A p.Q149Q TTTCAGCTGGCCT . 84 4 87 0 . . . 0 bcgsc.ca 37 4 189660032 189660032 + RNA SNP G T T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . . . . . TAGGTGGCCTTAG . 31 17 61 0 . . . 136157 bcgsc.ca 37 7 124116783 124116783 + RNA SNP T G G novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . . . . . CAGTGGTGGAAGA . 128 6 92 0 . . LOC392232 0 bcgsc.ca 37 8 73124317 73124317 + RNA SNP G T T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . . . . . AGATGGGCTGCTA . 69 4 44 0 . . WDR37 22884 bcgsc.ca 37 10 1170283 1170283 + Missense_Mutation SNP C T T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . WDR37 NM_014023 exon12 c.C1229T p.A410V ACTCTGCCATTAA . 61 4 43 0 . 52 DEAF1 10522 bcgsc.ca 37 11 674557 674557 + Silent SNP G A A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . DEAF1 NM_021008 exon10 c.C1482T p.H494H GTCAGCGTGGATC . 25 3 41 0 . 47 . 120824 bcgsc.ca 37 11 49000600 49000600 + RNA SNP C A A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . . . . . AAAATGCAACCAT . 68 51 162 0 . . RPLP0P2 113157 bcgsc.ca 37 11 61405178 61405178 + RNA SNP T A A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 T - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . . . . . CTTCTTTAAAAAA . 130 7 107 3 . . . 727828 bcgsc.ca 37 11 89515303 89515303 + RNA SNP G T T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . . . . . GTTATTGATTCTG . 156 37 164 0 . . . 0 bcgsc.ca 37 12 8568398 8568398 + RNA SNP C T T rs9669230 by2hit2allele;alternate_allele TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . . . . . AAAAACCAGCCCT . 43 21 49 0 . . . 0 bcgsc.ca 37 15 20467206 20467206 + RNA SNP A G G novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . . . . . GTCATCAGCAGTT . 96 17 82 1 . . SSTR5-AS1 146336 bcgsc.ca 37 16 1115568 1115568 + RNA SNP G T T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . . . . . GGGCTGGGGGCAA . 62 5 59 0 . . . 85343 bcgsc.ca 37 17 39228370 39228370 + RNA SNP G T T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . . . . . CCCTGTGCTGCCC . 14 3 26 0 . . CDC27 996 bcgsc.ca 37 17 45234386 45234386 + Silent SNP G T T novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca CDC27_ENST00000531206,NS,carcinoma,0,8 CDC27 NM_001114091 exon7 c.C735A p.V245V CAGTGGGACAGTA . 98 9 119 0 . 337 . 0 bcgsc.ca 37 X 65176467 65176467 + RNA SNP G C C novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . . . . . . GACCTCGGTAACT . 19 7 26 0 . . HDX 139324 bcgsc.ca 37 X 83581279 83581279 + Missense_Mutation SNP C A A novel TCGA-W5-AA2I-01A-32D-A417-09 TCGA-W5-AA2I-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 0d35cc49-75c0-4c1d-8319-d6812d7a5d08 2cb8b919-012e-4f36-9620-0517dd7b02ca . HDX NM_144657 exon9 c.G1854T p.E618D CTCGAGCTCATTT . 30 3 45 0 . 124