Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
MOV10	4343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	113242318	113242320	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_020963	exon18	c.2594_2596del	p.865_866del	TTCAGTAGAAGAA	.	35	10	43	0	.	.
F8	2157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	154194709	154194709	+	Silent	SNP	G	G	A	rs145623784		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_000132	exon8	c.C1263T	p.P421P	GTCATCGGGGGCG	.	24	4	76	0	0.000	.
DPYSL3	1809	hgsc.bcm.edu	37	5	146795287	146795287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	DPYSL3,NS,carcinoma,0,1	DPYSL3	NM_001197294	exon4	c.C805A	p.L269I	TGATGAGGTTCTG	.	40	2	57	0	.	0
SKAP1	8631	hgsc.bcm.edu	37	17	46262165	46262165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	SKAP1,NS,carcinoma,0,2	SKAP1	NM_003726	exon7	c.C487T	p.R163W	CCATCCGTACACC	.	38	3	42	0	.	0
ZNF831	128611	hgsc.bcm.edu;bcgsc.ca	37	20	57766888	57766888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_178457	exon1	c.G814A	p.A272T	GGGTCCGCATTTG	.	59	4	69	0	.	.
LENG1	79165	hgsc.bcm.edu	37	19	54662171	54662171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	LENG1,NS,neuroblastoma,0,1	LENG1	NM_024316	exon2	c.C161A	p.A54D	TGTCTGGCTTTCT	.	46	2	59	0	.	0
TMEM147	10430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36037440	36037440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_001242598	exon3	c.G160T	p.A54S	TTCTTGGCCACTT	.	21	7	45	0	.	.
GPR98	84059	hgsc.bcm.edu	37	5	89923034	89923034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	GPR98,colon,carcinoma,0,1	GPR98	NM_032119	exon7	c.G679A	p.E227K	GTACCAGAAAATG	.	40	2	30	0	.	0
ZDHHC24	254359	hgsc.bcm.edu	37	11	66311234	66311234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	ZDHHC24,colon,carcinoma,0,1	ZDHHC24	NM_207340	exon2	c.C500A	p.A167D	GTGTGGGCTCGCA	.	36	2	39	0	.	0
MICAL2	9645	hgsc.bcm.edu;bcgsc.ca	37	11	12244189	12244189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	MICAL2_ENST00000379612,NS,carcinoma,0,2	MICAL2_ENST00000379612	NM_014632	exon11	c.C1348A	p.Q450K	TTACCTCAGACAA	.	62	4	64	0	.	0
CAD	790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27457075	27457075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_004341	exon22	c.A3599G	p.N1200S	CCTTCAATCTGCA	.	16	7	23	0	.	.
WDR93	56964	hgsc.bcm.edu;ucsc.edu	37	15	90281353	90281353	+	Missense_Mutation	SNP	C	C	G	rs373980931	alternate_allele	TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_020212	exon16	c.C1847G	p.P616R	CCTGCCCACTCCT	.	28	4	19	0	.	.
LINC00645	100505967	hgsc.bcm.edu;broad.mit.edu	37	14	28102462	28102462	+	RNA	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	.	.	.	.	TATACAGATTCCA	.	85	4	72	0	.	.
RPAP3	79657	hgsc.bcm.edu	37	12	48062853	48062853	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	RPAP3,rectum,carcinoma,0,1	RPAP3	NM_024604	exon14	c.A1559G	p.Q520R	TAAGACTGACATA	.	48	2	68	0	.	0
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55146734	55146734	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_001081637	exon12	c.G1587A	p.Q529Q	TGCCCAGGAAGAA	.	41	11	65	0	.	.
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9089654	9089654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_024690	exon1	c.A2161G	p.S721G	TGGTGCTTATCTT	.	30	6	36	0	.	.
LRRC23	10233	hgsc.bcm.edu	37	12	7022136	7022136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_001135217	exon7	c.G1001T	p.R334L	CCCAGCGTGACCT	.	53	3	60	0	.	.
TCF4	6925	hgsc.bcm.edu	37	18	52895478	52895478	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	TCF4_ENST00000398339,NS,carcinoma,0,2	TCF4_ENST00000398339	NM_001243226	exon20	c.C2300A	p.S767X	TGATTCGATGCGT	.	42	2	68	0	.	0
ROBO4	54538	hgsc.bcm.edu;broad.mit.edu	37	11	124763789	124763789	+	Missense_Mutation	SNP	G	G	A	rs374471211		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	ROBO4,NS,carcinoma,+1,1	ROBO4	NM_019055	exon9	c.C1471T	p.R491C	GCCGGCGGTGGAT	.	10	3	8	0	.	+1
PCDHA6	56142	hgsc.bcm.edu	37	5	140209783	140209783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	PCDHA6_ENST00000529310,NS,carcinoma,0,2	PCDHA6_ENST00000529310	NM_018909	exon1	c.G2107A	p.A703T	ATCATCGCCATCT	.	45	2	52	0	.	0
EPHA2	1969	hgsc.bcm.edu;broad.mit.edu	37	1	16459707	16459707	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_004431	exon11	c.A2021T	p.N674I	ATGATGTTGTGGT	.	10	5	13	0	.	.
ZNF416	55659	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	58084364	58084364	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_017879	exon4	c.G908T	p.C303F	TTCCCACACTGAC	.	28	4	45	0	.	.
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38579446	38579446	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_015073	exon4	c.G1620A	p.E540E	CAAGGAGCACGGA	.	35	12	46	0	.	.
CLEC10A	10462	hgsc.bcm.edu	37	17	6979444	6979444	+	Missense_Mutation	SNP	G	G	A	rs376732406		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	CLEC10A,NS,carcinoma,0,2	CLEC10A	NM_182906	exon6	c.C380T	p.T127M	TTCTGCGTAGTGT	.	57	3	61	0	.	0
ABCG2	9429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	89018752	89018752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_004827	exon13	c.G1500T	p.K500N	CTTTGGCTTCAAT	.	27	13	28	0	.	.
KRT3	3850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53189250	53189250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_057088	exon1	c.C577A	p.Q193K	TTACTTGCCCAAT	.	65	23	117	0	.	.
MAZ	4150	hgsc.bcm.edu	37	16	29821450	29821450	+	Silent	SNP	A	A	G	rs372438870		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_002383	exon5	c.A1332G	p.A444A	AGCGGCAGCAGCG	.	24	6	20	0	.	.
AKR1C4	1109	hgsc.bcm.edu	37	10	5242162	5242162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_001818	exon2	c.G103T	p.V35L	AGAGCTGTAGAGG	.	65	4	72	0	.	.
AQPEP	0	hgsc.bcm.edu	37	5	115351066	115351066	+	Silent	SNP	T	T	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	FLJ90650,caecum,carcinoma,0,1	FLJ90650	NM_173800	exon17	c.T2568A	p.I856I	AAAGATTCAACTT	.	35	2	31	0	.	0
WDR3	10885	hgsc.bcm.edu	37	1	118495209	118495209	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	WDR3,NS,carcinoma,0,1	WDR3	NM_006784	exon19	c.C2075A	p.S692X	TTGTATCATCGTC	.	44	2	61	0	.	0
LIPF	8513	hgsc.bcm.edu	37	10	90429680	90429680	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_001198829	exon6	c.G539T	p.G180V	ATGTTGGCCATTC	.	54	3	71	0	.	.
MAN1A2	10905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	117957335	117957335	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_006699	exon4	c.G656C	p.G219A	ATATAGGAAGTTC	.	43	21	44	0	.	.
RUSC2	9853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	35546734	35546734	+	Silent	SNP	T	T	A	rs200234823	alternate_allele	TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_014806	exon2	c.T216A	p.S72S	GCACTCTACTCCA	.	16	8	12	0	.	.
MTHFD2	10797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74435800	74435800	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_006636	exon4	c.A514T	p.M172L	TATTCCATGTTAC	.	53	19	76	0	.	.
MTFMT	123263	hgsc.bcm.edu	37	15	65295439	65295439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	MTFMT_ENST00000220058,NS,carcinoma,0,2	MTFMT_ENST00000220058	NM_139242	exon9	c.G1131T	p.K377N	TTTCTGCTTCTTC	.	44	3	48	0	.	0
NBPF22P	285622	hgsc.bcm.edu	37	5	85582848	85582848	+	RNA	SNP	T	T	C	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	.	.	.	.	GCTGAATATACCT	.	74	23	111	0	.	.
AGBL2	79841	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	47701557	47701557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_024783	exon13	c.C1984A	p.L662I	CCAGAAGGGTGTC	.	42	4	54	0	.	.
NFE2L3	9603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	26224462	26224462	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_004289	exon4	c.T1144C	p.Y382H	CTACTGTATGACC	.	60	18	73	0	.	.
TMEM132C	92293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	129100764	129100764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_001136103	exon4	c.G1189T	p.G397W	CTTTCAGGGACTC	.	38	11	48	0	.	.
PSPH	5723	hgsc.bcm.edu	37	7	56085002	56085002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	PSPH,NS,carcinoma,0,2	PSPH	NM_004577	exon6	c.G346A	p.V116I	GCTCTACAATACT	.	69	3	90	0	.	0
HIST3H2BB	128312	hgsc.bcm.edu	37	1	228645919	228645919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_175055	exon1	c.G89A	p.R30H	AGAAGCGCAAGCG	.	90	3	77	0	.	.
CSMD1	64478	hgsc.bcm.edu	37	8	3063118	3063118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	CSMD1_ENST00000537824,NS,carcinoma,0,2	CSMD1_ENST00000537824	NM_033225	exon31	c.G4892A	p.G1631E	TCTGATCCCGTGT	.	46	2	38	0	.	0
LEF1	51176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	109086281	109086281	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_001130714	exon2	c.C252T	p.H84H	CTTGTCGTGGTAG	.	84	30	112	0	.	.
GPR123	84435	hgsc.bcm.edu	37	10	134912152	134912152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	GPR123_ENST00000368577,NS,carcinoma,0,2	GPR123_ENST00000368577	NM_001083909	exon4	c.G140A	p.R47H	CCATCCGCATCAG	.	37	2	47	0	.	0
HIST1H2AI	8329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	27776314	27776314	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_003509	exon1	c.G327A	p.L109L	CGTCCTGCCCAAC	.	63	18	65	0	.	.
MIR548F1	100302192	hgsc.bcm.edu	37	1	186324448	186324448	+	RNA	SNP	C	C	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	.	.	.	.	AAAAAGCAACACT	.	67	4	59	0	.	.
PRKRA	8575	hgsc.bcm.edu	37	2	179306336	179306336	+	Splice_Site	SNP	C	C	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	PRKRA,NS,carcinoma,0,1	PRKRA	NM_001139518	exon7	c.534+1G>A	.	TACTCACTAAAGA	.	41	3	35	0	.	0
ROCK1	6093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	18629827	18629827	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_005406	exon3	c.A190T	p.N64Y	TTTTATTTATTGT	.	30	11	22	0	.	.
HCN1	348980	hgsc.bcm.edu	37	5	45262723	45262723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	HCN1,NS,malignant_melanoma,0,1	HCN1	NM_021072	exon8	c.C1973A	p.S658Y	ATGCGGGAGGTCG	.	53	3	61	0	.	0
KDM6B	23135	hgsc.bcm.edu	37	17	7750177	7750177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.,2	.	NM_001080424	exon9	c.T752C	p.L251S	CACCATTACCACC	.	11	3	17	0	.	95
ACSM5	54988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20442583	20442583	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_017888	exon10	c.G1248C	p.E416D	AGAAGAGGGGAAT	.	30	4	43	0	.	.
VPS54	51542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	64189236	64189236	+	Silent	SNP	T	T	C	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_016516	exon7	c.A966G	p.T322T	CTCTTGTGTTGTT	.	66	27	93	0	.	.
TUBD1	51174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	57944110	57944110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_016261	exon7	c.G935T	p.G312V	TCAATACCTACCA	.	57	24	70	0	.	.
CAD	790	hgsc.bcm.edu;bcgsc.ca	37	2	27447924	27447924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_004341	exon11	c.G1433A	p.G478D	TTGGGGGCCAGAC	.	54	4	59	0	.	.
ARFGAP2	84364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47196607	47196607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_032389	exon5	c.C439A	p.P147T	TCTCTGGGGAGTG	.	49	17	59	0	.	.
ITGAX	3687	hgsc.bcm.edu	37	16	31372509	31372509	+	Silent	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	ITGAX,NS,carcinoma,0,1	ITGAX	NM_000887	exon9	c.G987T	p.L329L	CCAACTGAAGGAG	.	48	2	71	0	.	0
GPR179	440435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	36483728	36483728	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_001004334	exon11	c.G5724A	p.L1908L	TGCTTCCAAGGAA	.	33	10	16	0	.	.
KREMEN2	79412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	3016345	3016345	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_001253725	exon4	c.C381A	p.C127X	GGGATGCTTTGTG	.	36	11	49	0	.	.
NFKB2	4791	hgsc.bcm.edu	37	10	104157131	104157131	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_001077494	exon7	c.G468T	p.R156S	TCAGAGGCAGCGG	.	60	4	60	0	.	.
GGNBP1	449520	hgsc.bcm.edu;bcgsc.ca	37	6	33556722	33556722	+	RNA	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	.	.	.	.	ACTGAGGCATCTT	.	45	4	36	0	.	.
CHEK2	11200	hgsc.bcm.edu	37	22	29083913	29083913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	CHEK2,NS,carcinoma,0,15	CHEK2	NM_001005735	exon16	c.G1733A	p.R578H	GCTGGGCGCTTTG	.	38	3	69	1	.	0
VPS26A	9559	hgsc.bcm.edu	37	10	70892799	70892799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_004896	exon2	c.G149T	p.G50V	TTTCAGGAAAGGT	.	55	4	53	0	.	.
TAS2R41	259287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	143175419	143175419	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_176883	exon1	c.A454G	p.N152D	TGGGTGAACTACC	.	29	4	30	0	.	.
B3GNT6	192134	hgsc.bcm.edu	37	11	76751604	76751604	+	Splice_Site	SNP	T	T	C	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.,6	.	NM_138706	exon4	c.1006+1T>C	.	TGCAGCTTGCCTG	.	16	3	16	1	.	27
GPR160	26996	hgsc.bcm.edu	37	3	169802126	169802126	+	Silent	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	GPR160,NS,carcinoma,+1,1	GPR160	NM_014373	exon4	c.G366T	p.L122L	TTGCCTGAATTTC	.	31	2	31	0	.	+1
SEMA6D	80031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	48063949	48063949	+	Silent	SNP	A	A	G	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_153618	exon19	c.A3189G	p.P1063P	AACCCCATCTGTC	.	18	8	32	0	.	.
KDM4A	9682	hgsc.bcm.edu	37	1	44133482	44133482	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	KDM4A,NS,carcinoma,0,1	KDM4A	NM_014663	exon9	c.G955T	p.V319L	ATGGATGTGTTTG	.	44	2	53	0	.	0
ATP5O	539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	35276306	35276306	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_001697	exon6	c.T461A	p.L154H	TCAGAGAGTGTGG	.	157	23	150	0	.	.
ZNF821	55565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	71894451	71894451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_001201553	exon7	c.G709A	p.V237M	TGCACACAAGCAG	.	29	14	48	0	.	.
VPS13A	23230	hgsc.bcm.edu	37	9	79936212	79936212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	VPS13A_ENST00000376634,NS,lymphoid_neoplasm,0,3	VPS13A_ENST00000376634	NM_001018038	exon43	c.G5543T	p.C1848F	CCAAATGTGGTCT	.	59	2	61	0	.	0
CCDC109B	55013	hgsc.bcm.edu	37	4	110605624	110605624	+	Missense_Mutation	SNP	C	C	T	rs149233225	bycluster	TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	CCDC109B_ENST00000394650,NS,carcinoma,0,2	CCDC109B_ENST00000394650	NM_017918	exon6	c.C638T	p.S213L	CTCATTCGGAAGC	.	28	2	28	0	0.000	0
MUC7	4589	hgsc.bcm.edu;broad.mit.edu	37	4	71347033	71347033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	MUC7,NS,carcinoma,0,2	MUC7	NM_001145007	exon4	c.C572A	p.A191D	CAGCTGCCCCACC	.	50	4	63	0	.	0
IDH2	3418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90631837	90631837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	IDH2,NS,haematopoietic_neoplasm,-1,19	IDH2	NM_002168	exon4	c.G516T	p.R172S	GGCGTGCCTGCCA	.	37	13	38	0	.	-1
H19	283120	hgsc.bcm.edu;ucsc.edu	37	11	2017341	2017341	+	RNA	SNP	G	G	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	.	.	.	.	CAGAGGGCAGCCA	.	70	31	109	0	.	.
RSPRY1	89970	hgsc.bcm.edu;bcgsc.ca	37	16	57247850	57247850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_133368	exon6	c.C694A	p.Q232K	TTGCTACAGTGTC	.	86	4	98	0	.	.
AP3M2	10947	hgsc.bcm.edu	37	8	42015516	42015516	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	AP3M2,NS,carcinoma,0,1	AP3M2	NM_001134296	exon4	c.G331T	p.E111X	GTTTATGAGGTAT	.	40	2	46	0	.	0
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	33985237	33985237	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	CSMD2_ENST00000373381,axilla,malignant_melanoma,0,2	CSMD2_ENST00000373381	NM_052896	exon69	c.G10345T	p.E3449X	TGTTCTCGTGGCC	.	13	6	32	0	.	0
DSTYK	25778	broad.mit.edu	37	1	205132932	205132932	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	DSTYK	NM_199462	exon4	c.C1476T	p.V492V	GGTTCCGACGAAG	.	38	3	36	0	.	87
TRIM67	440730	broad.mit.edu	37	1	231299471	231299473	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	TRIM67	NM_001004342	exon1	c.756_758del	p.252_253del	GGTGCAGCCGCCG	.	6	2	4	0	.	160
.	0	broad.mit.edu	37	12	9716613	9716613	+	RNA	SNP	A	A	G	rs2536817		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	.	.	.	.	ATGTGTATATATA	.	49	4	40	1	.	.
MIR4307	0	broad.mit.edu	37	14	27378078	27378078	+	RNA	DEL	T	T	-	rs202079123		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	.	.	.	.	GAAGGCTTTTTTT	.	6	2	4	0	.	.
CYFIP1	23191	broad.mit.edu	37	15	23000152	23000152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	CYFIP1	NM_014608	exon30	c.G3506T	p.G1169V	TTCTTGGGCAGCA	.	58	3	63	0	.	159
RYR3	6263	broad.mit.edu	37	15	34018689	34018689	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	RYR3	NM_001243996	exon46	c.C7015T	p.L2339L	TTGAAACTGCCCT	.	21	3	39	0	.	760
DNAJA3	9093	broad.mit.edu	37	16	4497003	4497003	+	Silent	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	DNAJA3	NM_001135110	exon8	c.G1113T	p.T371T	CGAGACGATCAAC	.	22	3	31	0	.	52
LRRC37A4P	0	broad.mit.edu	37	17	43587569	43587569	+	RNA	SNP	G	G	C	rs2667851		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	.	.	.	.	CCGTCTGAAAAGA	.	89	4	77	1	G|1.000;|0.000	.
SEC14L1	6397	broad.mit.edu	37	17	75210105	75210105	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	SEC14L1	NM_001143999	exon17	c.G2148A	p.X716X	CAGGTAGTGCCGC	.	72	5	77	0	.	81
KLK5	25818	broad.mit.edu	37	19	51453322	51453322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	KLK5	NM_012427	exon3	c.G124A	p.V42M	AGGGCACGGTGTT	.	38	3	50	0	.	37
SLC25A12	8604	broad.mit.edu	37	2	172641829	172641829	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	SLC25A12	NM_003705	exon18	c.T1992A	p.S664R	AGCAACACTAGGA	.	52	3	67	0	.	59
.	80167	broad.mit.edu;bcgsc.ca	37	4	128956946	128956946	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	.	.	.	.	ACCGCTTCCTCCA	.	57	5	54	0	.	.
OCLN	0	broad.mit.edu	37	5	68787616	68787617	+	RNA	DEL	AA	AA	-	rs34768268	bycluster	TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	OCLN	.	.	.	.	TTTCTTAAAAAAA	.	10	5	4	0	AA|0.500;-|0.500	22
CCT6P1	0	broad.mit.edu	37	7	65222951	65222951	+	RNA	DEL	T	T	-	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	.	.	.	.	TGTAACTTTTTTT	.	6	2	5	0	.	.
DPY19L2P2	0	broad.mit.edu	37	7	102825947	102825947	+	RNA	SNP	A	A	G	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	.	.	.	.	CTTGACACTTGCC	.	46	6	50	0	.	.
EEF1D	1936	broad.mit.edu;bcgsc.ca	37	8	144672086	144672086	+	Missense_Mutation	SNP	C	C	T	rs370379043		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	EEF1D	NM_001130053	exon3	c.G166A	p.D56N	CAGGGTCGTCCTG	.	8	3	24	0	.	48
IPPK	64768	broad.mit.edu	37	9	95396672	95396672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	IPPK	NM_022755	exon11	c.C1166T	p.T389M	ACCTTCGTTAGCG	.	40	3	56	0	.	34
TUBBP5	0	broad.mit.edu	37	9	141070944	141070944	+	RNA	SNP	C	C	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	.	.	.	.	CCCTCTCAGTCCA	.	80	3	88	0	.	.
MAGEB10	139422	broad.mit.edu	37	X	27840135	27840135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	MAGEB10	NM_182506	exon3	c.C712T	p.H238Y	ATTGAGCACTTCA	.	33	6	42	0	.	107
WIPF1	7456	ucsc.edu	37	2	175431867	175431867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	WIPF1	NM_003387	exon7	c.C1387T	p.P463S	GAGGTGGCAAATC	.	42	4	83	1	.	88
SLC7A11	23657	ucsc.edu;bcgsc.ca	37	4	139153507	139153507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	SLC7A11	NM_014331	exon3	c.C434A	p.A145E	CCAAATGCCAGGG	.	42	4	54	0	.	40
TSPAN14	81619	ucsc.edu;bcgsc.ca	37	10	82280581	82280581	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	TSPAN14	.	.	.	.	CTCTGTAGCACCA	.	19	6	29	0	.	29
GRK5	2869	ucsc.edu	37	10	121184542	121184542	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	GRK5	NM_005308	exon6	c.G478T	p.E160X	TTCCACGAATATC	.	38	4	68	0	.	58
KRTAP5-5	439915	ucsc.edu	37	11	1651645	1651645	+	Missense_Mutation	SNP	A	A	G	rs77039648	bycluster	TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	KRTAP5-5	NM_001001480	exon1	c.A575G	p.Y192C	AGCCCTACTGCTG	.	40	8	38	8	A|0.999;G|0.001	86
SP7	121340	ucsc.edu;bcgsc.ca	37	12	53722690	53722690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	SP7	NM_152860	exon2	c.A536G	p.Q179R	GTCCCTTGCAGCC	.	28	4	26	0	.	30
KIAA0586	9786	ucsc.edu;bcgsc.ca	37	14	58955379	58955379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	KIAA0586	NM_001244189	exon26	c.G3727T	p.D1243Y	AGTATGGATTTCC	.	40	4	50	0	.	180
C15orf54	400360	ucsc.edu;bcgsc.ca	37	15	39544794	39544794	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	C15orf54	NM_207445	exon2	c.C458T	p.A153V	ATGCTGCTGACAG	.	36	4	42	0	.	18
EXOC3L1	283849	ucsc.edu;bcgsc.ca	37	16	67220210	67220210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	EXOC3L1	NM_178516	exon9	c.A1426G	p.R476G	TCCCCCTGAAGTG	.	33	4	46	0	.	52
GZF1	64412	ucsc.edu;bcgsc.ca	37	20	23345860	23345860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	GZF1	NM_022482	exon1	c.G840T	p.E280D	AAATGAGGGTTGC	.	29	4	28	0	.	61
VSIG1	340547	ucsc.edu;bcgsc.ca	37	X	107319375	107319375	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	VSIG1	NM_001170553	exon7	c.G865T	p.V289F	ATCTCTGTTGTGT	.	35	4	50	0	.	126
RNPEP	6051	bcgsc.ca	37	1	201965299	201965299	+	Silent	SNP	C	T	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	RNPEP	NM_020216	exon4	c.C762T	p.C254C	GCCCTGCCTGATT	.	110	5	107	0	.	39
.	400986	bcgsc.ca	37	2	96525702	96525702	+	Missense_Mutation	SNP	C	T	T	rs71255701		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	.	.	.	.	AGTACACTAGCCT	.	422	20	204	3	C|0.500;T|0.500	.
NCAPH	23397	bcgsc.ca	37	2	97020038	97020038	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	NCAPH	NM_015341	exon9	c.G1120T	p.D374Y	GACTTTGATGCCA	.	48	4	60	0	.	67
PXK	54899	bcgsc.ca	37	3	58395275	58395275	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	PXK	NM_017771	exon15	c.G1325T	p.R442I	ATCGAAGACTGAC	.	23	3	34	0	.	89
.	5088	bcgsc.ca	37	3	142897153	142897153	+	RNA	SNP	T	A	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	.	.	.	.	TTTTTTTAAAGAA	.	78	8	97	4	.	.
SPON2	10417	bcgsc.ca	37	4	1161434	1161434	+	Silent	SNP	C	T	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	SPON2	NM_001199021	exon8	c.G822A	p.T274T	CAGCGGCGTTTCT	.	83	5	85	0	.	22
ANAPC4	29945	bcgsc.ca	37	4	25419867	25419867	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	ANAPC4	NM_013367	exon29	c.G2290A	p.A764T	GAGGAGGCCAGTA	.	51	4	77	0	.	61
N4BP2	55728	bcgsc.ca	37	4	40154490	40154490	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	N4BP2	NM_018177	exon17	c.C5234T	p.A1745V	AACCAGCTGTCAT	.	69	4	76	0	.	166
.	391703	bcgsc.ca	37	4	145493772	145493772	+	RNA	SNP	G	A	A	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	.	.	.	.	GAGATCGACCTGG	.	11	6	22	0	.	.
CYFIP1	23191	bcgsc.ca	37	15	22925822	22925822	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	CYFIP1	NM_014608	exon2	c.G40T	p.V14L	TCCAACGTGGACC	.	20	3	28	0	.	159
.	0	bcgsc.ca	37	16	52689891	52689891	+	RNA	SNP	T	C	C	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	.	.	.	.	CTGAAATGCACCA	.	73	9	84	1	.	.
ATP8B3	148229	bcgsc.ca	37	19	1783099	1783099	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	ATP8B3	NM_138813	exon29	c.C3831A	p.S1277R	GTCACTGCTGACC	.	18	3	30	0	.	108
MUC16	94025	bcgsc.ca	37	19	9070320	9070320	+	Missense_Mutation	SNP	G	C	C	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	MUC16	NM_024690	exon3	c.C17126G	p.A5709G	TGCATGGCTTCTG	.	37	4	59	0	.	4315
.	0	bcgsc.ca	37	X	55661142	55661142	+	RNA	SNP	A	T	T	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	.	.	.	.	ACCCTGATCTCTC	.	45	22	95	0	.	.
PDGFRB	5159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149500517	149500518	+	Missense_Mutation	DNP	GA	GA	TT	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	GA	GA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	NM_002609	exon18	c.T2519A	p.V840E	ATCTTGACCAGCT	.	27	9	28	0	.	.
RELB	5971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45532159	45532159	+	Silent	SNP	A	A	G	novel		TCGA-3X-AAVA-01A-11D-A417-09	TCGA-3X-AAVA-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d1d86aa-d72b-441f-9db7-c8abdba61a42	db714f8e-6bbe-4713-a252-2f38ae5c7d6a	.	.	.	p.T300T	.	.	AAACACATCAGAG	.	38	15	59	0	.	.