Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
VWA5B1	127731	broad.mit.edu	37	1	20671961	20671961	+	Missense_Mutation	SNP	G	G	A	rs11582960	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	.	NM_001039500	exon17	c.G2639A	p.R880H	ACCGCCGCTACCA	.	327	10	532	0	G|0.696;A|0.304	0	0	0	0	0
ZC3H12A	80149	broad.mit.edu	37	1	37941415	37941415	+	Silent	SNP	C	C	G	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ZC3H12A-92	NM_025079	exon2	c.C318G	p.L106L	TCAGCTCCCTCTA	.	72	3	130	0	.	3	3	0	0	0
STIL	6491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47746485	47746485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	STIL-659	NM_003035	exon12	c.G1645A	p.E549K	ACTCTTCGTTTTG	.	44	14	103	0	.	1	1	0	0	0
ODF2L	57489	ucsc.edu	37	1	86836714	86836714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ODF2L-69	NM_001007022	exon10	c.A1043G	p.N348S	TTTGTATTCTCAA	.	38	4	64	0	.	0	0	0	0	0
PLEKHO1	51177	ucsc.edu	37	1	150131221	150131221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	PLEKHO1-226	NM_016274	exon6	c.G733A	p.E245K	CCTTGGGAAAAAA	.	104	2	202	0	.	24	18	6	0	0
LMNA	4000	bcgsc.ca	37	1	156105772	156105772	+	Silent	SNP	G	G	A	rs17847242		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	LMNA-228	NM_005572	exon6	c.G1017A	p.A339A	GCTGGCGGAAAAG	.	88	4	177	1	G|0.999;A|0.001	195	195	0	0	0
MROH9	80133	bcgsc.ca	37	1	170928671	170928671	+	Missense_Mutation	SNP	T	T	C	rs2294740	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	.	NM_025063	exon5	c.T221C	p.V74A	TGCTAGTTGTCAT	.	60	4	58	0	T|0.784;C|0.216	0	0	0	0	0
LGR6	59352	bcgsc.ca	37	1	202287754	202287754	+	Missense_Mutation	SNP	G	G	A	rs75658797	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	LGR6-160	NM_001017403	exon18	c.G2323A	p.V775M	AGGCACGTGGCCT	.	95	5	145	0	G|0.899;A|0.101	0	0	0	0	0
SVIL	6840	bcgsc.ca	37	10	29839864	29839864	+	Silent	SNP	A	A	C	rs1270874	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	SVIL-96	NM_003174	exon8	c.T489G	p.A163A	AGAACTAGCATCT	.	121	6	205	2	A|0.289;C|0.711	0	0	0	0	0
MAT1A	4143	ucsc.edu;bcgsc.ca	37	10	82034842	82034842	+	Silent	SNP	A	A	G	rs10887711	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	MAT1A-90	NM_000429	exon7	c.T882C	p.A294A	ATATGCAGCTGAG	.	40	5	79	0	A|0.230;G|0.770	5	5	0	0	0
MAT1A	4143	ucsc.edu;bcgsc.ca	37	10	82034854	82034854	+	Silent	SNP	T	T	C	rs10788546	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	MAT1A-90	NM_000429	exon7	c.A870G	p.V290V	GCGGTCTACCTTG	.	43	5	77	0	T|0.236;C|0.764	2	2	0	0	0
LRIT1	26103	broad.mit.edu;bcgsc.ca	37	10	85992141	85992141	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	LRIT1-90	NM_015613	exon4	c.C1414A	p.R472R	CCCGCCGCATGCT	.	129	6	210	0	.	0	0	0	0	0
C10orf95	79946	hgsc.bcm.edu	37	10	104210735	104210735	+	Missense_Mutation	SNP	C	C	A	rs2281878	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	C10orf95-91	NM_024886	exon2	c.G253T	p.A85S	CGGAAGCTGTGGG	.	5	5	2	0	C|0.759;A|0.241	0	0	0	0	0
ADD3	120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	111879036	111879036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ADD3-157	NM_001121	exon7	c.A785G	p.Y262C	TTGCCTATTATGA	.	93	34	157	0	.	2	1	1	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1092602	1092619	+	In_Frame_Del	DEL	CCACCACTCCCAGCCCTC	CCACCACTCCCAGCCCTC	-	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	CCACCACTCCCAGCCCTC	CCACCACTCCCAGCCCTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	MUC2-90	NM_002457	exon30	c.4421_4438del	p.1474_1480del	CTCCAACCACCAC	.	163	25	258	0	.	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1250488	1250488	+	Silent	SNP	C	C	T	rs2075859	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	.	NM_002458	exon9	c.C1065T	p.C355C	GCTCTGCGAGGAC	.	88	5	155	0	C|0.605;T|0.395	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1271429	1271429	+	Missense_Mutation	SNP	C	C	T	rs2943516		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	.	NM_002458	exon31	c.C13319T	p.P4440L	CCACCCCGTCCTC	.	563	15	980	9	C|0.522;T|0.479	0	0	0	0	0
CAPRIN1	4076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	34104425	34104425	+	Splice_Site	SNP	G	G	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	CAPRIN1-91	NM_203364	exon8	c.879+1G>T	.	ACAGAGGTATGAT	.	51	21	151	0	.	1	0	1	0	0
OR4C3	256144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	48347234	48347234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	OR4C3-69	NM_001004702	exon1	c.T742C	p.Y248H	ATCCTGTACTCCT	.	222	13	357	0	.	0	0	0	0	0
PDE3A	5139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	20766633	20766633	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	PDE3A-94	NM_000921	exon3	c.A1268T	p.K423M	TTCCAAAGGTAGG	.	70	33	88	0	.	0	0	0	0	0
ASB8	140461	hgsc.bcm.edu;bcgsc.ca	37	12	48543591	48543603	+	Frame_Shift_Del	DEL	GCCCCGCTCTCTA	GCCCCGCTCTCTA	-	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	GCCCCGCTCTCTA	GCCCCGCTCTCTA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ASB8-226	NM_024095	exon4	c.413_425del	p.138_142del	ACAGAGGCCCCGC	.	111	41	128	1	.	0	0	0	0	0
KRT1	3848	hgsc.bcm.edu	37	12	53069243	53069243	+	Missense_Mutation	SNP	T	T	C	rs77846840		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	KRT1-92	NM_006121	exon9	c.A1669G	p.S557G	AGCTGCTACCTCC	.	45	11	36	0	T|0.500;C|0.500	0	0	0	0	0
NUAK1	9891	bcgsc.ca	37	12	106460938	106460938	+	Missense_Mutation	SNP	G	G	C	rs3741883	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	NUAK1-359	NM_014840	exon7	c.C1628G	p.P543R	ATTTCAGGGCTGA	.	203	7	190	2	G|0.795;C|0.205	4	4	0	0	0
SUDS3	64426	hgsc.bcm.edu;bcgsc.ca	37	12	118852225	118852225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	SUDS3-90	NM_022491	exon12	c.G974T	p.R325L	GCCGGCGCTCAGC	.	53	4	52	0	.	23	23	0	0	0
GJB2	2706	bcgsc.ca	37	13	20763642	20763642	+	Missense_Mutation	SNP	C	C	T	rs2274084	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	GJB2-90	NM_004004	exon2	c.G79A	p.V27I	AGAGGACGGTGAG	.	267	8	421	6	C|0.947;T|0.053	2	2	0	0	0
FAM194B	220081	ucsc.edu	37	13	46170726	46170726	+	Missense_Mutation	SNP	A	A	G	rs28548352		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	FAM194B-68	NM_182542	exon3	c.T415C	p.Y139H	CCAGATACTCTTC	.	21	9	68	0	.	0	0	0	0	0
FAM194B	220081	ucsc.edu	37	13	46170735	46170735	+	Missense_Mutation	SNP	C	C	T	rs28460344		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	FAM194B-68	NM_182542	exon3	c.G406A	p.E136K	CTTCCTCCTCCAG	.	25	14	71	1	.	0	0	0	0	0
FAM194B	220081	hgsc.bcm.edu;ucsc.edu	37	13	46170737	46170737	+	Missense_Mutation	SNP	T	T	C	rs200764156		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	FAM194B-68	NM_182542	exon3	c.A404G	p.E135G	TCCTCCTCCAGAT	.	25	14	73	0	.	0	0	0	0	0
EBPL	84650	broad.mit.edu	37	13	50235160	50235160	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	EBPL-90	NM_032565	exon4	c.C565G	p.L189V	GTTCTAGCCATGA	.	87	3	153	0	.	87	87	0	0	0
ARHGEF7	8874	bcgsc.ca	37	13	111870037	111870037	+	Silent	SNP	T	T	C	rs2296354	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ARHGEF7-232	NM_001113511	exon6	c.T543C	p.D181D	GACCGATAATAGC	.	195	6	304	1	T|0.807;C|0.193	0	0	0	0	0
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	54307147	54307147	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	UNC13C-51	NM_001080534	exon1	c.C2047G	p.L683V	AACAGTCTTTTTG	.	83	10	128	0	.	0	0	0	0	0
MYO15A	51168	bcgsc.ca	37	17	18041507	18041507	+	Silent	SNP	C	C	T	rs2280777	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	MYO15A-97	NM_016239	exon16	c.C4954T	p.L1652L	ATCTCACTGAAGC	.	82	5	129	1	C|0.501;N|0.000	0	0	0	0	0
CCL4L2	388372	broad.mit.edu	37	17	34641466	34641466	+	Missense_Mutation	SNP	G	G	A	rs148287175	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	CCL4L2-46	NM_207007	exon3	c.G208A	p.G70S	AAAAGAGGCAAGC	.	159	4	529	0	G|0.997;A|0.003	60	60	0	0	0
EPN3	55040	bcgsc.ca	37	17	48614119	48614119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	EPN3-91	NM_017957	exon2	c.G202T	p.G68C	GACAGCGGCAAGA	.	131	5	233	0	.	0	0	0	0	0
UNK	85451	broad.mit.edu;bcgsc.ca	37	17	73806016	73806016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	UNK-68	NM_001080419	exon2	c.G280A	p.D94N	AAGTACGACGAGG	.	202	8	301	0	.	2	2	0	0	0
DSG3	1830	hgsc.bcm.edu	37	18	29049127	29049127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	DSG3-98	NM_001944	exon12	c.G1712T	p.S571I	CAGACAGTCAGAA	.	80	4	150	0	.	0	0	0	0	0
FZR1	51343	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	3527019	3527019	+	Silent	SNP	C	C	T	rs138835338	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	FZR1-227	NM_001136198	exon5	c.C429T	p.N143N	CGGCAACGATGTG	.	257	114	200	1	C|0.996;T|0.004	50	29	21	0	0
CATSPERD	257062	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	5744509	5744509	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	.	NM_152784	exon8	c.G645T	p.V215V	TGTAGTGAATCAA	.	82	5	103	0	.	0	0	0	0	0
ZNF546	339327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40520583	40520583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ZNF546-155	NM_178544	exon7	c.A1406G	p.Y469C	AACCCTATGAATG	.	57	25	54	0	.	25	24	0	0	1
HRC	3270	hgsc.bcm.edu	37	19	49657754	49657754	+	Silent	SNP	G	G	A	rs145933641	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	HRC-91	NM_002152	exon1	c.C741T	p.D247D	ATCATCGTCATCT	.	83	7	102	0	G|0.998;A|0.002	0	0	0	0	0
CTU1	90353	hgsc.bcm.edu	37	19	51602298	51602298	+	Missense_Mutation	SNP	C	C	G	rs12983578		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	CTU1-68	NM_145232	exon3	c.G607C	p.E203Q	CCCCCTCGCCGGG	.	5	4	1	0	C|0.900;G|0.100	1	0	1	0	0
SSC5D	284297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	56012011	56012011	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	.	NM_001195267	exon11	c.G2457A	p.R819R	GGTCCGGCCTCGA	.	176	11	178	0	.	1	1	0	0	0
ZFP28	140612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57051018	57051018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ZFP28-91	NM_020828	exon2	c.T233C	p.L78P	CTGCTCTTCCCCA	.	129	66	88	0	.	2	0	2	0	0
ZNF814	730051	ucsc.edu	37	19	58384712	58384712	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	.	NM_001144989	exon3	c.T2046C	p.H682H	TCCAGTATGGCCA	.	233	1	194	0	.	3	2	1	0	0
PDE1A	5136	broad.mit.edu	37	2	183291349	183291349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	PDE1A-93	NM_001258313	exon1	c.C9A	p.D3E	GACATGGTCATCC	.	103	3	164	0	.	0	0	0	0	0
ITGAV	3685	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	187521095	187521095	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ITGAV-653	NM_002210	exon17	c.G1686A	p.L562L	GGGACTGATGCAG	.	80	32	167	1	.	1	0	1	0	0
METTL21A	151194	broad.mit.edu	37	2	208478027	208478027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	METTL21A-69	NM_145280	exon4	c.C400A	p.P134T	CTCCAGGAGAAAA	.	35	3	69	0	.	5	5	0	0	0
CRYGB	1419	bcgsc.ca	37	2	209007559	209007559	+	Missense_Mutation	SNP	T	T	G	rs796287	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	CRYGB-90	NM_005210	exon3	c.A331C	p.I111L	CAGAGATACAGTC	.	204	8	306	2	G|0.655;N|0.000	0	0	0	0	0
IGFBP5	3488	bcgsc.ca	37	2	217559484	217559484	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	IGFBP5-522	NM_000599	exon1	c.C15A	p.T5T	GACCGCGGTGAGC	.	20	3	41	0	.	3	3	0	0	0
FARP2	9855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242396172	242396172	+	Silent	SNP	G	G	C	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	FARP2-93	NM_014808	exon14	c.G1422C	p.T474T	TTCCACGAAGAGT	.	197	181	238	1	.	0	0	0	0	0
TGM6	343641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2384245	2384245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	TGM6-94	NM_198994	exon9	c.C1112T	p.P371L	GCGGCCCAGCCTC	.	136	32	100	0	.	0	0	0	0	0
POM121L1P	25812	bcgsc.ca	37	22	22986764	22986764	+	RNA	SNP	G	G	C	rs62228122		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	.	.	.	.	.	CTCAGTGCACGGG	.	29	13	310	13	G|0.445;C|0.555	0	0	0	0	0
CRYBB2	1415	bcgsc.ca	37	22	25627604	25627604	+	Silent	SNP	G	G	A	rs8140949	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	CRYBB2-90	NM_000496	exon6	c.G483A	p.G161G	CCGTGGGCTGCAG	.	169	8	489	3	G|0.755;A|0.245	0	0	0	0	0
GAL3ST1	9514	bcgsc.ca	37	22	30953295	30953295	+	Missense_Mutation	SNP	C	C	T	rs2267161	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	GAL3ST1-90	NM_004861	exon3	c.G85A	p.V29M	AGTACACCAGCAG	.	237	8	669	5	C|0.672;T|0.328	0	0	0	0	0
XIRP1	165904	bcgsc.ca	37	3	39230610	39230610	+	Silent	SNP	G	G	A	rs80147433	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	XIRP1-158	NM_001198621	exon2	c.C327T	p.H109H	CCTCTCGTGTTCT	.	157	6	221	0	G|0.986;A|0.014	0	0	0	0	0
TMEM115	11070	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	50392898	50392900	+	In_Frame_Del	DEL	TCA	TCA	-	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	TCA	TCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	TMEM115-278	NM_007024	exon2	c.930_932del	p.310_311del	TCCTCTTCATCAT	.	100	28	171	0	.	0	0	0	0	0
ACAD9	28976	bcgsc.ca	37	3	128614185	128614185	+	Silent	SNP	A	A	C	rs1680778	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ACAD9-92	NM_014049	exon4	c.A379C	p.R127R	TACTCAAGACTAG	.	123	6	211	0	A|0.502;C|0.498	13	13	0	0	0
FGFBP2	83888	bcgsc.ca	37	4	15964670	15964670	+	Missense_Mutation	SNP	C	C	T	rs35496730	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	FGFBP2-22	NM_031950	exon1	c.G83A	p.S28N	CCAGTGCTTCCTT	.	89	6	160	0	C|0.872;T|0.128	0	0	0	0	0
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87643581	87643581	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	PTPN13-230	NM_006264	exon10	c.A1602C	p.K534N	AAGAAAACTGAGG	.	341	147	287	0	.	0	0	0	0	0
COL25A1	84570	hgsc.bcm.edu;broad.mit.edu	37	4	109861707	109861707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	COL25A1-92	NM_198721	exon9	c.G660T	p.M220I	TCCTGGCATTCCA	.	58	4	78	0	.	0	0	0	0	0
FRG1	2483	bcgsc.ca	37	4	190878589	190878589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	FRG1-90	NM_004477	exon6	c.A469G	p.I157V	TGCTTTATTAGAT	.	284	12	407	11	.	64	64	0	0	0
SRD5A1	6715	hgsc.bcm.edu	37	5	6633779	6633779	+	Silent	SNP	C	C	G	rs248793	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	SRD5A1-90	NM_001047	exon1	c.C90G	p.R30R	CGCGCGCAATCGT	.	6	5	3	0	C|0.454;G|0.546	0	0	0	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	4	4	1	0	G|0.585;C|0.415	0	0	0	0	0
CNOT6	57472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	179994980	179994980	+	Missense_Mutation	SNP	G	G	A	rs143354534	alternate_allele	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	CNOT6-90	NM_015455	exon9	c.G1004A	p.R335Q	AACTTCGGAAGGA	.	120	18	105	0	G|1.000;T|0.000	5	5	0	0	0
C6orf222	389384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36298263	36298263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	C6orf222-93	NM_001010903	exon2	c.C205A	p.H69N	TGCAGTGAGCCTC	.	68	18	70	0	.	0	0	0	0	0
COL21A1	81578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	55990909	55990909	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	COL21A1-24	NM_030820	exon13	c.C1581A	p.G527G	TGGCATGCCATGA	.	135	28	185	0	.	0	0	0	0	0
CD109	135228	bcgsc.ca	37	6	74468692	74468692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	CD109-155	NM_133493	exon7	c.G699T	p.L233F	GACTTTGCAGACA	.	65	4	82	0	.	0	0	0	0	0
TIAM2	26230	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	155469331	155469337	+	Frame_Shift_Del	DEL	GACACGC	GACACGC	-	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	GACACGC	GACACGC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	TIAM2-93	NM_012454	exon6	c.1891_1897del	p.631_633del	AAAGAGGACACGC	.	287	0	385	0	.	0	0	0	0	0
ANKIB1	54467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92027761	92027761	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	ANKIB1-432	NM_019004	exon20	c.T2768G	p.M923R	GCCTCATGAGACT	.	189	95	163	0	.	7	6	1	0	0
THAP5	168451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	108205172	108205172	+	Silent	SNP	T	T	C	rs142576735		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	THAP5-68	NM_001130475	exon3	c.A651G	p.Q217Q	CAAAGATTGATGA	.	88	15	72	0	T|1.000;C|0.000	5	5	0	0	0
PCMTD1	115294	bcgsc.ca	37	8	52733110	52733110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	PCMTD1-68	NM_052937	exon6	c.G875A	p.G292D	TGATTACCCACAA	.	178	8	218	4	.	17	17	0	0	0
RIPK2	8767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	90777603	90777603	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	RIPK2-523	NM_003821	exon3	c.G362C	p.R121T	CATTGAGATTTCG	.	100	54	62	0	.	1	0	1	0	0
EXT1	2131	hgsc.bcm.edu;bcgsc.ca	37	8	118817057	118817057	+	Silent	SNP	C	C	T	rs142710059	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	EXT1-660	NM_000127	exon10	c.G1959A	p.E653E	AATGTCCTCACAA	.	286	19	284	0	C|0.994;T|0.006	31	30	1	0	0
PRUNE2	158471	ucsc.edu	37	9	79318585	79318585	+	Silent	SNP	G	G	C	rs17180718	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	PRUNE2-157	NM_015225	exon9	c.C7944G	p.A2648A	GTCCCTGGCATCC	.	37	4	52	0	G|0.976;C|0.024	0	0	0	0	0
INVS	27130	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	103008983	103008983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	INVS-92	NM_183245	exon8	c.G992T	p.G331V	CAGCTGGCAAAGG	.	250	27	405	1	.	0	0	0	0	0
OR1L8	138881	bcgsc.ca	37	9	125330325	125330325	+	Silent	SNP	C	C	G	rs10985703	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	OR1L8-70	NM_001004454	exon1	c.G432C	p.L144L	CACCAGCAGGACA	.	220	7	309	1	C|0.662;G|0.338	0	0	0	0	0
NOTCH1	4851	bcgsc.ca	37	9	139407932	139407932	+	Silent	SNP	A	A	G	rs2229971	byfrequency	TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	NOTCH1-5459	NM_017617	exon14	c.T2265C	p.N755N	ACACTCATTGTTG	.	111	7	206	2	A|0.484;G|0.516	0	0	0	0	0
NOTCH1	4851	broad.mit.edu	37	9	139411769	139411769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	NOTCH1-5459	NM_017617	exon9	c.C1510A	p.R504S	GGCAGCGGCCATT	.	90	3	181	1	.	0	0	0	0	0
FOXO4	4303	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	70321291	70321294	+	Frame_Shift_Del	DEL	CCTC	CCTC	-	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	CCTC	CCTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	FOXO4-986	NM_005938	exon2	c.1211_1214del	p.404_405del	TTCCTTCCTCCAG	.	74	33	70	0	.	0	0	0	0	0
CYLC1	1538	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	83128178	83128178	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	CYLC1-112	NM_021118	exon4	c.A462G	p.R154R	TAAAAGACAAAAT	.	81	79	82	1	.	0	0	0	0	0
NUP188	23511	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	131719265	131719266	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-PK-A5H8-01A-11D-A29I-10	TCGA-PK-A5H8-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	59162a9b-9c64-4525-80ea-143fd766b6b2	cf83fa12-254e-4252-8a99-ac629bc5118b	.	NUP188-207	NM_015354	exon5	c.281_282insGT	p.Q94fs	TACTCCAGTGTTA	.	118	48	206	0	.	0	0	0	0	0