Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
UBR4	23352	hgsc.bcm.edu	37	1	19518806	19518806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	UBR4-612	NM_020765	exon11	c.C1270A	p.L424I	GACTGAGGTTCAG	.	79	4	100	0	.	0	0	0	0	0
LRP8	7804	hgsc.bcm.edu	37	1	53793511	53793511	+	Missense_Mutation	SNP	T	T	C	rs4926972		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	LRP8-90	NM_004631	exon1	c.A74G	p.Q25R	TGGAGCTGCAGCA	.	6	6	0	0	T|0.504;C|0.496	0	0	0	0	0
GSTM5	2949	bcgsc.ca	37	1	110257590	110257590	+	Silent	SNP	T	T	C	rs2229059	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	GSTM5-514	NM_000851	exon6	c.T382C	p.L128L	AAATACTTGGAGG	.	195	6	372	2	T|0.956;C|0.044	0	0	0	0	0
PTGFRN	5738	hgsc.bcm.edu	37	1	117452869	117452869	+	Missense_Mutation	SNP	C	C	G	rs77292583		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	PTGFRN-91	NM_020440	exon1	c.C44G	p.S15W	TCCTGTCGTTGGG	.	16	12	2	0	C|0.978;G|0.022	0	0	0	0	0
THEM4	117145	hgsc.bcm.edu	37	1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	rs3748805		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	THEM4-522	NM_053055	exon1	c.T50G	p.L17R	GGCGGCAGGCACA	.	10	10	0	0	T|0.073;G|0.921	1	0	1	0	0
NIT1	4817	bcgsc.ca	37	1	161089175	161089175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	NIT1-90	NM_001185092	exon3	c.C350T	p.A117V	AGCTTGCCAGGTA	.	61	4	78	0	.	7	7	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	5	5	0	0	T|0.229;C|0.771	0	0	0	0	0
PTGS2	5743	bcgsc.ca	37	1	186648197	186648197	+	Silent	SNP	C	C	G	rs5277	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	PTGS2-227	NM_000963	exon3	c.G306C	p.V102V	TGTCAACACATAA	.	108	5	133	0	C|0.719;G|0.281	0	0	0	0	0
GLRX2	51022	hgsc.bcm.edu	37	1	193074486	193074486	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	GLRX2-186	NM_197962	exon1	c.G27A	p.A9A	CGTCCCCGCCAGC	.	5	4	0	0	.	1	0	1	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504669	228504669	+	Silent	SNP	G	G	A	rs61825302	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	OBSCN-403	NM_001271223	exon62	c.G16416A	p.A5472A	CTCTGCGCGGCTC	.	15	9	0	0	G|0.841;A|0.159	0	0	0	0	0
C1orf229	388759	hgsc.bcm.edu	37	1	247274899	247274899	+	Missense_Mutation	SNP	A	A	G	rs73135916		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	C1orf229-90	NM_207401	exon1	c.T628C	p.S210P	TGGCCGAAGTCGG	.	5	5	0	0	A|0.665;G|0.335	0	0	0	0	0
ASB13	79754	broad.mit.edu	37	10	5690971	5690971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	ASB13-227	NM_024701	exon4	c.G479A	p.R160Q	TGCTCCCGGGCAC	.	98	4	94	0	.	0	0	0	0	0
AGAP6	414189	broad.mit.edu	37	10	51748584	51748584	+	Missense_Mutation	SNP	A	A	G	rs75102885		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	AGAP6-1	NM_001077665	exon1	c.A109G	p.R37G	GGAGCTAGGGACA	.	13	2	9	0	G|1.000;|0.000	15	7	8	0	0
ASAH2	56624	broad.mit.edu;bcgsc.ca	37	10	51974561	51974561	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	ASAH2-90	NM_019893	exon8	c.G1082A	p.R361H	ATGCAACGTGGTC	.	284	35	286	1	.	0	0	0	0	0
PCDH15	65217	hgsc.bcm.edu	37	10	55587197	55587197	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	PCDH15-193	NM_001142763	exon33	c.T4338G	p.P1446P	TGGCGGAGGCGGC	.	39	6	23	0	.	0	0	0	0	0
DOCK1	1793	broad.mit.edu	37	10	128796494	128796494	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	DOCK1-698	NM_001380	exon8	c.G748T	p.V250L	GACCCTGTGGAGT	.	150	5	141	0	.	0	0	0	0	0
GLRX3	10539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	131969900	131969900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	GLRX3-22	NM_006541	exon8	c.G824T	p.G275V	GTACTGGGTATGT	.	43	5	81	0	.	0	0	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219045	134219045	+	Silent	SNP	C	C	T	rs11146364	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	PWWP2B-90	NM_001098637	exon2	c.C1041T	p.P347P	CGAGCCCGTGTAC	.	10	8	0	0	C|0.860;T|0.140	12	8	4	0	0
GPR123	84435	hgsc.bcm.edu	37	10	134942340	134942340	+	Silent	SNP	C	C	T	rs10776696	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	GPR123-90	NM_001083909	exon7	c.C1008T	p.A336A	CGGGGCCGCGCTG	.	28	21	0	0	C|0.747;T|0.253	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135012430	135012430	+	Silent	SNP	T	T	C	rs3008389	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	KNDC1-229	NM_152643	exon14	c.T2418C	p.V806V	TGGAGTTGCTTCC	.	12	5	0	0	T|0.470;C|0.530	1	0	1	0	0
ZNF511	118472	hgsc.bcm.edu	37	10	135122507	135122507	+	Silent	SNP	G	G	A	rs3008357		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	ZNF511-90	NM_145806	exon1	c.G60A	p.P20P	GGAGCCGCTGCCT	.	14	7	1	0	G|0.816;A|0.184	0	0	0	0	0
IRF7	3665	hgsc.bcm.edu	37	11	615103	615103	+	Silent	SNP	G	G	A	rs113083699		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	IRF7-90	NM_004031	exon1	c.C216T	p.I72I	CTTGAAGATGCGC	.	9	9	1	0	G|0.949;A|0.051	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu;bcgsc.ca	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	104	11	35	0	.	0	0	0	0	0
OR52M1	119772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4567166	4567166	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	OR52M1-68	NM_001004137	exon1	c.G746C	p.C249S	ACCTCTGTGCCAT	.	115	30	153	0	.	0	0	0	0	0
DYNC2H1	79659	bcgsc.ca	37	11	103124135	103124135	+	Silent	SNP	T	T	G	rs11225634	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	DYNC2H1-68	NM_001080463	exon67	c.T10185G	p.T3395T	TGTTACTGAGGTT	.	197	7	372	2	T|0.823;G|0.177	0	0	0	0	0
ZNF385A	25946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	54778302	54778302	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	ZNF385A-23	NM_001130967	exon2	c.G57A	p.P19P	CATGATCGGGGGC	.	46	7	42	0	.	0	0	0	0	0
RCBTB1	55213	bcgsc.ca	37	13	50141345	50141345	+	Missense_Mutation	SNP	G	G	A	rs4942848	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	RCBTB1-91	NM_018191	exon3	c.C71T	p.A24V	ACACACGCCTTCC	.	136	7	179	1	G|0.431;A|0.568	0	0	0	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	.	NM_018139	exon1	c.G1185C	p.A395A	GTCCTCCGCGCGA	.	5	5	0	0	C|0.569;G|0.431	0	0	0	0	0
FRMD6	122786	bcgsc.ca	37	14	52156572	52156572	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	FRMD6-524	NM_001267046	exon2	c.T18C	p.F6F	GAATTTTCATAAC	.	185	13	260	3	.	0	0	0	0	0
FRMD6	122786	bcgsc.ca	37	14	52156575	52156575	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	FRMD6-524	NM_001267046	exon2	c.T21C	p.H7H	TTTTCATAACAAC	.	195	13	271	3	.	0	0	0	0	0
FRMD6	122786	bcgsc.ca	37	14	52156605	52156605	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	FRMD6-524	NM_001267046	exon2	c.T51C	p.S17S	CCGCAGTGTGTGC	.	245	13	323	3	.	0	0	0	0	0
FRMD6	122786	bcgsc.ca	37	14	52156626	52156626	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	FRMD6-524	NM_001267046	exon2	c.C72T	p.N24N	TCCCAACGATGAA	.	248	13	324	3	.	0	0	0	0	0
L3HYPDH	112849	hgsc.bcm.edu	37	14	59950910	59950910	+	Missense_Mutation	SNP	A	A	G	rs17096291	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	.	NM_144581	exon1	c.T125C	p.V42A	CCAGACACCTCCG	.	60	20	7	0	A|0.965;G|0.035	2	2	0	0	0
STON2	85439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	81737202	81737202	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	STON2-95	NM_001256430	exon7	c.C2425A	p.H809N	AACAGTGTGGGTG	.	52	21	95	0	.	0	0	0	0	0
KCNK10	54207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	88652129	88652129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	KCNK10-95	NM_138318	exon7	c.G1382A	p.R461K	TTTTTCCTCTTGG	.	250	83	338	1	.	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	15	15	0	0	A|0.226;C|0.774	0	0	0	0	0
WFIKKN1	117166	broad.mit.edu	37	16	683832	683832	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	WFIKKN1-90	NM_053284	exon2	c.C1422A	p.G474G	CTTGGGCACCAAG	.	269	8	80	0	.	0	0	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2049882	2049882	+	Missense_Mutation	SNP	G	G	C	rs61746014		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	ZNF598-432	NM_178167	exon11	c.C1668G	p.D556E	GCCGCCGTCCTCC	.	16	7	1	0	G|0.949;C|0.051	3	2	1	0	0
RRN3	54700	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	15168670	15168670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	RRN3-91	NM_018427	exon11	c.C907A	p.L303I	GGTCGAGCCGTTC	.	96	10	98	3	.	1	1	0	0	0
ZNF48	197407	hgsc.bcm.edu	37	16	30407177	30407177	+	Missense_Mutation	SNP	A	A	G	rs7200143		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	ZNF48-90	NM_001214906	exon2	c.A62G	p.Q21R	AGCCACAGAGAGG	.	82	29	3	0	A|0.961;G|0.039	0	0	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	IRX3-90	NM_024336	exon2	c.T1265C	p.L422P	GGGTGCAGGCGGG	.	8	4	0	0	T|0.035;G|0.004	0	0	0	0	0
CX3CL1	6376	ucsc.edu	37	16	57416276	57416276	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	CX3CL1-226	NM_002996	exon3	c.C526T	p.Q176X	AAGGCTCAGGATG	.	39	4	41	0	.	0	0	0	0	0
DHODH	1723	broad.mit.edu	37	16	72056283	72056283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	DHODH-227	NM_001361	exon6	c.T728C	p.L243S	ATGGCTTGCGGAG	.	99	3	54	0	.	4	4	0	0	0
C17orf97	400566	hgsc.bcm.edu	37	17	260182	260182	+	Silent	SNP	T	T	C	rs7502594		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	C17orf97-91	NM_001013672	exon1	c.T49C	p.L17L	CGCCGATTAGTCG	.	12	4	0	0	T|0.657;C|0.343	0	0	0	0	0
GSG2	83903	hgsc.bcm.edu	37	17	3627619	3627619	+	Silent	SNP	C	C	T	rs1185511	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	GSG2-297	NM_031965	exon1	c.C390T	p.C130C	ACCCTGCGGCCCG	.	28	4	0	0	C|0.779;T|0.221	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	GLTPD2-68	NM_001014985	exon4	c.C627A	p.D209E	CCCGGACGCGGGC	.	4	4	0	0	C|0.015;A|0.985	0	0	0	0	0
VAT1	10493	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	41170156	41170156	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	VAT1-90	NM_006373	exon3	c.C663G	p.A221A	GGCCGAGGCCGTT	.	259	14	196	0	.	28	28	0	0	0
CDK5RAP3	80279	ucsc.edu;bcgsc.ca	37	17	46053334	46053334	+	Silent	SNP	A	A	G	rs202125432	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	CDK5RAP3-226	NM_176096	exon8	c.A753G	p.E251E	GGTGGAACGACCC	.	122	15	92	2	A|0.949;G|0.051	36	36	0	0	0
UTP18	51096	broad.mit.edu;bcgsc.ca	37	17	49338205	49338205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	UTP18-90	NM_016001	exon1	c.T260C	p.V87A	CGGCCGTGGAGCG	.	248	12	105	1	.	1	1	0	0	0
PGS1	9489	hgsc.bcm.edu	37	17	76374837	76374837	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	PGS1-90	NM_024419	exon1	c.C91T	p.L31L	GCGCTCCTGGGAC	.	20	15	0	0	.	0	0	0	0	0
KCNG2	26251	hgsc.bcm.edu	37	18	77623898	77623898	+	Silent	SNP	C	C	T	rs147089723	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	KCNG2-90	NM_012283	exon1	c.C231T	p.A77A	GTGCGCCTTCCGC	.	33	26	2	0	C|0.982;T|0.018	0	0	0	0	0
ABCA7	10347	ucsc.edu	37	19	1047002	1047002	+	Silent	SNP	A	A	G	rs3752234	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	ABCA7-98	NM_019112	exon14	c.A1824G	p.A608A	CGCCGCACTGCTG	.	187	119	12	0	A|0.402;G|0.598	2	0	2	0	0
ATP8B3	148229	bcgsc.ca	37	19	1784890	1784890	+	Silent	SNP	A	A	G	rs3764605	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	.	NM_138813	exon28	c.T3588C	p.S1196S	GGACACACTCAGC	.	216	7	129	1	A|0.582;G|0.418	0	0	0	0	0
KLF16	83855	hgsc.bcm.edu	37	19	1854557	1854557	+	Silent	SNP	A	A	G	rs3746045	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	KLF16-90	NM_031918	exon2	c.T660C	p.P220P	GGCACCAGGGCGC	.	15	4	0	0	A|0.591;G|0.409	1	1	0	0	0
ADAT3	113179	hgsc.bcm.edu	37	19	1912251	1912251	+	Missense_Mutation	SNP	A	A	G	rs150715312	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	ADAT3-154	NM_138422	exon2	c.A205G	p.K69E	CTGGACAAGCGCC	.	37	25	3	0	A|0.993;G|0.007	0	0	0	0	0
ANKLE1	126549	hgsc.bcm.edu	37	19	17392977	17392977	+	Silent	SNP	C	C	T	rs77247570		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	.	NM_152363	exon2	c.C174T	p.C58C	GCGTTGCCTCGGG	.	25	23	3	0	C|0.977;T|0.023	0	0	0	0	0
HAPLN4	404037	hgsc.bcm.edu	37	19	19369489	19369489	+	Silent	SNP	T	T	C	rs80354663	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	HAPLN4-91	NM_023002	exon4	c.A660G	p.Q220Q	GGGGTATTGCACT	.	18	18	0	0	T|0.989;C|0.011	0	0	0	0	0
GLTSCR1	29998	hgsc.bcm.edu	37	19	48205288	48205288	+	Silent	SNP	G	G	A	rs8100472		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	GLTSCR1-48	NM_015711	exon15	c.G4299A	p.A1433A	GCTGGCGGCCGTG	.	12	12	0	0	G|0.917;A|0.083	0	0	0	0	0
KCNA7	3743	hgsc.bcm.edu	37	19	49575618	49575618	+	Silent	SNP	A	A	G	rs71352730	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	KCNA7-90	NM_031886	exon1	c.T225C	p.G75G	CCGCCCACCGGAC	.	16	11	1	0	A|0.868;G|0.132	0	0	0	0	0
SIGLEC5	8778	bcgsc.ca	37	19	52132662	52132662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	SIGLEC5-92	NM_003830	exon3	c.C649T	p.R217C	CTTGGCGTTTCAT	.	685	278	684	4	.	0	0	0	0	0
LILRA1	11024	broad.mit.edu	37	19	55106239	55106239	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	LILRA1-93	NM_006863	exon4	c.G180A	p.L60L	CCGTCTGTATAGA	.	285	10	322	0	.	0	0	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	7	7	0	0	A|0.003;G|0.997	0	0	0	0	0
EFR3B	22979	bcgsc.ca	37	2	25354712	25354712	+	Missense_Mutation	SNP	G	G	T	rs200151921		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	.	NM_014971	exon10	c.G1079T	p.S360I	CGGTCAGCCTCGG	.	227	18	170	3	.	0	0	0	0	0
ANKRD53	79998	hgsc.bcm.edu	37	2	71206267	71206267	+	Missense_Mutation	SNP	G	G	A	rs57527165	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	ANKRD53-90	NM_001115116	exon2	c.G211A	p.A71T	GCGCAGGCGACTG	.	15	7	0	0	G|0.893;A|0.107	0	0	0	0	0
MRPS5	64969	hgsc.bcm.edu	37	2	95787483	95787483	+	Silent	SNP	C	C	A	rs114292623	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	MRPS5-92	NM_031902	exon1	c.G54T	p.T18T	ACCTGCCGTCCCG	.	24	14	1	0	C|0.990;A|0.010	0	0	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	.	NM_023016	exon1	c.A126G	p.L42L	CGCCCTAGGCGGC	.	5	5	0	0	A|0.029;G|0.971	0	0	0	0	0
PIKFYVE	200576	bcgsc.ca	37	2	209212707	209212707	+	Silent	SNP	G	G	A	rs2304545	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	PIKFYVE-583	NM_015040	exon35	c.G5334A	p.T1778T	GCAGACGGGCAAG	.	290	8	373	1	G|0.296;A|0.704	0	0	0	0	0
ERBB4	2066	bcgsc.ca	37	2	212251864	212251864	+	Silent	SNP	T	T	C	rs3748962	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	ERBB4-1461	NM_005235	exon27	c.A3195G	p.V1065V	TCGGTATACAAAC	.	117	6	200	1	T|0.756;C|0.244	0	0	0	0	0
TRIP12	9320	bcgsc.ca	37	2	230668858	230668858	+	Silent	SNP	T	T	C	rs13018957	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	TRIP12-572	NM_004238	exon18	c.A2511G	p.T837T	AAATAATGTCTTA	.	138	6	213	1	T|0.611;C|0.389	2	2	0	0	0
ALPPL2	251	hgsc.bcm.edu	37	2	233274475	233274475	+	Missense_Mutation	SNP	C	C	A	rs56080708	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	ALPPL2-91	NM_031313	exon11	c.C1492A	p.R498S	GCGCCCCGCGCCG	.	14	9	1	0	C|0.901;A|0.099	0	0	0	0	0
ANO7	50636	hgsc.bcm.edu	37	2	242157776	242157776	+	Silent	SNP	C	C	G	rs201381970		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	ANO7-92	NM_001001891	exon21	c.C2463G	p.A821A	CGCCGCCGCGCAC	.	19	7	0	0	C|0.970;G|0.030	0	0	0	0	0
TCF15	6939	hgsc.bcm.edu	37	20	590456	590456	+	Silent	SNP	A	A	G	rs282164	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	TCF15-90	NM_004609	exon1	c.T426C	p.R142R	CGCGGCACGGAAG	.	8	8	0	0	A|0.165;G|0.835	0	0	0	0	0
CST3	1471	hgsc.bcm.edu	37	20	23618488	23618488	+	Silent	SNP	G	G	A	rs1055084		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	CST3-91	NM_000099	exon1	c.C12T	p.P4P	GCGCAGGGGCCCG	.	6	4	0	0	T|0.037;C|0.962	119	48	71	0	0
FRG1B	284802	bcgsc.ca	37	20	29628229	29628229	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	FRG1B-22	.	.	.	.	TTAGGGGAAAATG	.	966	59	1194	23	.	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29628299	29628299	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	FRG1B-22	.	.	.	.	GCAAAAAGTAAAA	.	577	37	696	16	.	70	70	0	0	0
SOGA1	140710	broad.mit.edu	37	20	35414904	35414904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	.	NM_080627	exon15	c.T4970C	p.L1657P	GGGGGGAGTGCCC	.	73	9	52	6	.	0	0	0	0	0
DNTTIP1	116092	hgsc.bcm.edu	37	20	44420682	44420682	+	Silent	SNP	T	T	C	rs2664591	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	DNTTIP1-91	NM_052951	exon1	c.T39C	p.P13P	GGGACCTAGCGGG	.	4	4	0	0	T|0.311;C|0.689	0	0	0	0	0
NCOA3	8202	hgsc.bcm.edu	37	20	46279863	46279863	+	Silent	SNP	G	G	A	rs141008500	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	NCOA3-229	NM_181659	exon20	c.G3789A	p.Q1263Q	GCAGCAGCAACAG	.	154	8	148	0	G|0.993;A|0.007	4	4	0	0	0
GATA5	140628	hgsc.bcm.edu	37	20	61050495	61050495	+	Missense_Mutation	SNP	G	G	A	rs112701160		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	GATA5-90	NM_080473	exon2	c.C83T	p.A28V	GAGCCGGCGCCCG	.	24	10	1	0	G|0.998;A|0.002	0	0	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444633	61444633	+	Missense_Mutation	SNP	G	G	A	rs75570150		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	OGFR-68	NM_007346	exon7	c.G1666A	p.E556K	CCAGCCGAGAGCC	.	39	5	3	0	.	102	101	1	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61444637	61444637	+	Missense_Mutation	SNP	G	G	C	rs78981100		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	OGFR-68	NM_007346	exon7	c.G1670C	p.S557T	CCGAGAGCCCATC	.	39	5	3	0	.	113	112	1	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042579	36042579	+	Missense_Mutation	SNP	C	C	G	rs13049028	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	CLIC6-91	NM_053277	exon1	c.C892G	p.Q298E	CCGCAGCAATCGG	.	16	13	0	0	C|0.802;G|0.198	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042584	36042584	+	Silent	SNP	G	G	A	rs13049239	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	CLIC6-91	NM_053277	exon1	c.G897A	p.S299S	GCAATCGGGGGAC	.	15	12	0	0	G|0.803;A|0.197	0	0	0	0	0
KRTAP10-5	386680	hgsc.bcm.edu	37	21	45999661	45999661	+	Silent	SNP	C	C	T	rs7510443	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	KRTAP10-5-90	NM_198694	exon1	c.G795A	p.A265A	GGAGCACGCGGGG	.	69	5	5	0	C|0.979;T|0.021	0	0	0	0	0
MICAL3	57553	hgsc.bcm.edu	37	22	18347738	18347738	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	MICAL3-68	NM_001136004	exon23	c.C2904A	p.P968P	CTGCAGGGGTCCT	.	67	4	104	0	.	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780079	20780079	+	Silent	SNP	C	C	T	rs185252842		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	SCARF2-341	NM_153334	exon11	c.G2199A	p.E733E	CGCCTCCTCGGGC	.	4	4	0	0	C|0.977;T|0.023	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	SCARF2-341	NM_153334	exon11	c.G2187C	p.P729P	CAGCCCCGGGGGG	.	5	5	0	0	C|0.138;G|0.862	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	SCARF2-341	NM_153334	exon11	c.C2181G	p.R727R	CGGGGGGCGCGGC	.	6	6	0	0	G|0.826;C|0.174	0	0	0	0	0
MN1	4330	hgsc.bcm.edu	37	22	28194747	28194747	+	Silent	SNP	C	C	T	rs45554336	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	MN1-993	NM_002430	exon1	c.G1785A	p.V595V	GCCGCCCACCGGG	.	5	5	0	0	C|0.932;T|0.068	0	0	0	0	0
MN1	4330	broad.mit.edu	37	22	28194910	28194912	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	MN1-993	NM_002430	exon1	c.1620_1622del	p.540_541del	TGTTGCTGTTGCT	.	40	7	10	0	.	0	0	0	0	0
MN1	4330	hgsc.bcm.edu	37	22	28194933	28194933	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	MN1-993	NM_002430	exon1	c.A1599G	p.Q533Q	CTGCTGTTGCTGC	.	58	13	14	0	.	1680	19	1660	0	1
MN1	4330	hgsc.bcm.edu	37	22	28194936	28194936	+	Silent	SNP	C	C	T	rs45597040	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	MN1-993	NM_002430	exon1	c.G1596A	p.Q532Q	CTGTTGCTGCTGC	.	59	13	15	0	C|0.963;T|0.037	22	17	5	0	0
CARD10	29775	hgsc.bcm.edu	37	22	37915145	37915145	+	Silent	SNP	C	C	T	rs79861380		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	CARD10-662	NM_014550	exon1	c.G63A	p.E21E	CTCCGCCTCAGAC	.	27	23	1	0	C|0.935;T|0.065	0	0	0	0	0
FBLN2	2199	ucsc.edu	37	3	13612286	13612286	+	Missense_Mutation	SNP	A	A	G	rs28587534	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	FBLN2-91	NM_001998	exon2	c.A431G	p.H144R	CGGGCCACAAGTA	.	77	21	18	1	A|0.908;G|0.092	0	0	0	0	0
DALRD3	55152	hgsc.bcm.edu	37	3	49055839	49055839	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	DALRD3-90	NM_001009996	exon1	c.C159T	p.D53D	CTGGCCGTCATCG	.	29	15	2	0	.	0	0	0	0	0
CHDH	55349	hgsc.bcm.edu	37	3	53857917	53857917	+	Missense_Mutation	SNP	T	T	G	rs9001	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	CHDH-91	NM_018397	exon3	c.A119C	p.E40A	CTGTACTCGTCCC	.	9	9	0	0	T|0.749;G|0.251	0	0	0	0	0
SNTN	132203	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	63649755	63649755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	SNTN-69	NM_001080537	exon4	c.T428C	p.V143A	GGAATGTAAAAAT	.	130	9	164	0	.	0	0	0	0	0
DGKQ	1609	hgsc.bcm.edu	37	4	962100	962100	+	Silent	SNP	G	G	A	rs76581432		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	DGKQ-537	NM_001347	exon5	c.C633T	p.A211A	CACGCCGGCCAGC	.	82	37	1	0	G|0.976;A|0.024	1	1	0	0	0
SLC26A1	10861	hgsc.bcm.edu	37	4	985372	985372	+	Silent	SNP	C	C	T	rs36084010	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	SLC26A1-91	NM_022042	exon2	c.G120A	p.S40S	ACTGCACGAGCAG	.	68	32	1	0	C|0.968;T|0.032	1	0	1	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	154	50	11	0	C|0.960;G|0.040	25	9	16	0	0
ADRA2C	152	broad.mit.edu	37	4	3769013	3769013	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	ADRA2C-522	NM_000683	exon1	c.G680T	p.G227V	TCATGGGCCTGGT	.	214	9	41	0	.	0	0	0	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	OTOP1-92	NM_177998	exon1	c.310_318del	p.104_106del	CAGCATCCACAGC	.	78	7	10	0	.	0	0	0	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228456	4228456	+	Silent	SNP	G	G	T	rs73191872	bycluster;by1000genomes	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	OTOP1-92	NM_177998	exon1	c.C136A	p.R46R	CGCCCCGCCGGGG	.	91	14	3	0	.	0	0	0	0	0
GPR78	27201	hgsc.bcm.edu	37	4	8583212	8583212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	GPR78-516	NM_080819	exon1	c.G503A	p.R168H	GTCCGCGCTTCGC	.	21	10	0	0	.	0	0	0	0	0
DHX15	1665	bcgsc.ca	37	4	24556528	24556528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	DHX15-91	NM_001358	exon5	c.C900A	p.F300L	AATCTGGAATTTT	.	57	4	46	0	.	4	4	0	0	0
LPHN3	23284	broad.mit.edu	37	4	62897212	62897212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	LPHN3-508	NM_015236	exon20	c.G3271T	p.A1091S	ACCTGGGCCTTTG	.	99	4	73	0	.	2	2	0	0	0
SOWAHB	345079	hgsc.bcm.edu	37	4	77818202	77818202	+	Silent	SNP	T	T	C	rs2645674	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	.	NM_001029870	exon1	c.A801G	p.T267T	CCTGCTTGTCGCA	.	11	5	0	0	T|0.691;C|0.309	0	0	0	0	0
PRDM8	56978	hgsc.bcm.edu	37	4	81123603	81123603	+	Silent	SNP	G	G	T	rs6831357	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	PRDM8-91	NM_001099403	exon4	c.G987T	p.L329L	TGGTCTGGTAGGG	.	7	7	1	0	G|0.933;T|0.067	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88536535	88536535	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	DSPP-90	NM_014208	exon5	c.T2721C	p.D907D	CAGTGATAGCAGC	.	1185	73	700	0	.	0	0	0	0	0
C4orf27	54969	hgsc.bcm.edu	37	4	170678999	170678999	+	Silent	SNP	G	G	C	rs61997073	byfrequency;by1000genomes	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	C4orf27-92	NM_017867	exon1	c.C30G	p.P10P	TCCGCCGGGCCTG	.	47	19	2	0	G|0.955;C|0.045	2	0	2	0	0
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	101816044	101816044	+	Silent	SNP	G	G	A	rs143064096	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	SLCO6A1-96	NM_173488	exon2	c.C453T	p.Y151Y	AATATCGTAACTC	.	141	35	131	0	G|0.998;A|0.002	0	0	0	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553994	140553994	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	PCDHB7-95	NM_018940	exon1	c.G1578T	p.A526A	GCAGGCGTTCGAG	.	504	14	119	0	.	6	3	3	0	0
PCDHB10	56126	hgsc.bcm.edu	37	5	140573834	140573834	+	Missense_Mutation	SNP	C	C	T	rs17844632		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	PCDHB10-92	NM_018930	exon1	c.C1709T	p.A570V	GCTCCGCGCCCTG	.	101	20	2	0	.	7	7	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086211	5086211	+	Silent	SNP	G	G	C	rs584962		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	PPP1R3G-136	NM_001145115	exon1	c.G492C	p.L164L	GCGCCTGCGAAGC	.	7	7	0	0	G|0.000;C|1.000	2	0	2	0	0
RREB1	6239	hgsc.bcm.edu	37	6	7230680	7230680	+	Missense_Mutation	SNP	G	G	T	rs9502564	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	RREB1-144	NM_001003700	exon10	c.G2348T	p.G783V	GCGGGGGCCACAA	.	12	11	0	0	G|0.546;T|0.454	1	1	0	0	0
C6orf136	221545	hgsc.bcm.edu	37	6	30615244	30615244	+	Missense_Mutation	SNP	G	G	A	rs28360037	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	C6orf136-90	NM_001161376	exon1	c.G236A	p.G79E	TCGCGGGAGCGGG	.	30	18	0	0	G|0.939;A|0.061	0	0	0	0	0
DNAH8	1769	hgsc.bcm.edu;bcgsc.ca	37	6	38813530	38813530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	DNAH8-615	NM_001206927	exon36	c.G5026T	p.G1676W	GTCTTAGGGTCTT	.	56	4	68	0	.	0	0	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	24	23	0	0	T|0.441;C|0.559	0	0	0	0	0
EEF1A1	1915	broad.mit.edu	37	6	74228721	74228721	+	Silent	SNP	G	G	A	rs7797365	bycluster	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	EEF1A1-226	NM_001402	exon4	c.C555T	p.P185P	TGTGTCGGGGTTG	.	77	3	64	1	.	1147	1144	1	2	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	18	9	0	0	T|0.089;G|0.911	0	0	0	0	0
CTGF	1490	hgsc.bcm.edu	37	6	132271952	132271952	+	Missense_Mutation	SNP	G	G	C	rs7451102		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	CTGF-90	NM_001901	exon2	c.C247G	p.H83D	CGAAGTGACAGAA	.	5	5	0	0	G|0.000;C|1.000	0	0	0	0	0
CTGF	1490	hgsc.bcm.edu	37	6	132271959	132271959	+	Silent	SNP	T	T	G	rs12206231		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	CTGF-90	NM_001901	exon2	c.A240C	p.L80L	ACAGAATAGGCCC	.	5	5	0	0	T|0.000;G|1.000	0	0	0	0	0
CTGF	1490	hgsc.bcm.edu	37	6	132271980	132271980	+	Silent	SNP	T	T	G	rs6934749		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	CTGF-90	NM_001901	exon2	c.A219C	p.P73P	GTCGCATGGGTCG	.	5	5	0	0	T|0.000;G|1.000	0	0	0	0	0
MAP7	9053	hgsc.bcm.edu	37	6	136683828	136683828	+	Missense_Mutation	SNP	A	A	G	rs80342066	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	MAP7-90	NM_001198609	exon11	c.T1376C	p.M459T	GGGGCCATGGCTG	.	13	7	1	0	A|0.983;G|0.017	0	0	0	0	0
GINM1	116254	hgsc.bcm.edu	37	6	149887586	149887586	+	Silent	SNP	G	G	A	rs11547034		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	.	NM_138785	exon1	c.G36A	p.R12R	CCTCCGGCTCCTG	.	29	16	0	0	G|0.934;A|0.066	1	0	1	0	0
PRR18	285800	hgsc.bcm.edu	37	6	166720806	166720806	+	Silent	SNP	G	G	C	rs911203	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	PRR18-514	NM_175922	exon1	c.C825G	p.S275S	AGCCGCGGACTCC	.	7	7	0	0	G|0.796;C|0.204	0	0	0	0	0
VWDE	221806	hgsc.bcm.edu	37	7	12443312	12443312	+	Missense_Mutation	SNP	C	C	T	rs139879021		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	VWDE-68	NM_001135924	exon1	c.G31A	p.A11T	TCAGCGCGATCAC	.	30	11	1	0	C|0.996;T|0.004	0	0	0	0	0
FKBP9	11328	hgsc.bcm.edu	37	7	32997323	32997323	+	Silent	SNP	G	G	A	rs141020449	by1000genomes	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	FKBP9-651	NM_007270	exon1	c.G138A	p.E46E	CGACGAGTGCCCG	.	71	42	3	0	G|0.996;A|0.004	0	0	0	0	0
MEPCE	56257	hgsc.bcm.edu	37	7	100027763	100027763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	MEPCE-91	NM_019606	exon1	c.G122A	p.G41E	CCTCTGGGGAGCT	.	14	12	0	0	.	1	1	0	0	0
NKX2-6	137814	hgsc.bcm.edu	37	8	23560484	23560484	+	Missense_Mutation	SNP	G	G	T	rs143039156		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	NKX2-6-68	NM_001136271	exon2	c.C386A	p.A129E	TGCCGCGCCTTGG	.	23	13	0	0	G|0.988;T|0.012	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	19	19	0	0	.	0	0	0	0	0
KCNK9	51305	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	140715144	140715144	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	KCNK9-93	NM_016601	exon1	c.C92G	p.S31W	TGGTCCGACTCGA	.	280	50	143	0	.	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	10	10	0	0	A|0.118;G|0.882	1	0	1	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144996987	144996987	+	Silent	SNP	G	G	A	rs80143277	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	PLEC-141	NM_201380	exon31	c.C7521T	p.A2507A	CCGCTCGGCCTCC	.	57	30	2	0	G|0.985;A|0.015	9	5	4	0	0
C8orf82	414919	hgsc.bcm.edu	37	8	145754272	145754272	+	Missense_Mutation	SNP	G	G	A	rs75220950	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	C8orf82-44	NM_001001795	exon1	c.C29T	p.T10I	GCCAGGGTCCGGA	.	41	40	0	0	G|0.923;A|0.077	9	0	9	0	0
BAG1	573	hgsc.bcm.edu	37	9	33264540	33264540	+	Missense_Mutation	SNP	C	C	G	rs1071545		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	BAG1-228	NM_004323	exon1	c.G133C	p.G45R	GACGCCCAGAGGG	.	8	8	0	0	C|0.976;G|0.024	1	0	1	0	0
SPATA31E1	286234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	90499864	90499864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	.	NM_178828	exon4	c.C462A	p.H154Q	CTCCCACCTGCCC	.	90	17	99	0	.	0	0	0	0	0
MEGF9	1955	hgsc.bcm.edu	37	9	123476303	123476303	+	Missense_Mutation	SNP	A	A	C	rs7861158	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	.	NM_001080497	exon1	c.T334G	p.S112A	TGGAAGAGGGTCC	.	49	12	0	0	A|0.951;C|0.049	0	0	0	0	0
FPGS	2356	hgsc.bcm.edu	37	9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	rs10760502	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	FPGS-90	NM_004957	exon1	c.A64G	p.I22V	CGCGGCATAACGA	.	7	7	0	0	A|0.235;G|0.765	0	0	0	0	0
NOTCH1	4851	hgsc.bcm.edu	37	9	139417333	139417333	+	Silent	SNP	G	G	A	rs61751557	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	NOTCH1-5459	NM_017617	exon4	c.C711T	p.G237G	GACGTCGCCCGTG	.	34	27	0	0	G|0.987;A|0.013	0	0	0	0	0
C9orf172	389813	hgsc.bcm.edu	37	9	139740174	139740174	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	.	NM_001080482	exon1	c.C1308A	p.P436P	TCCGCCCCGGCTG	.	8	8	0	0	.	0	0	0	0	0
C9orf172	389813	hgsc.bcm.edu	37	9	139740195	139740195	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	.	NM_001080482	exon1	c.C1329A	p.R443R	CAGCCGCCACTAC	.	10	8	0	0	.	0	0	0	0	0
CACNA1B	774	hgsc.bcm.edu	37	9	140917779	140917779	+	Missense_Mutation	SNP	G	G	T	rs7873074	byfrequency	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	CACNA1B-138	NM_001243812	exon19	c.G2584T	p.A862S	ACCCCCGCGGCGG	.	4	4	0	0	G|0.601;T|0.399	0	0	0	0	0
DCAF8L1	139425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	27999220	27999220	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	DCAF8L1-112	NM_001017930	exon1	c.G232C	p.D78H	CGACGTCTTCACT	.	275	49	244	0	.	0	0	0	0	0
ANO4	121601	broad.mit.edu	37	12	101368641	101368642	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	ANO4-96	NM_178826	exon6	c.471_472insC	p.L157fs	TTACCTGCCCCGC	.	118	7	89	0	.	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388398	1388399	+	Frame_Shift_Ins	INS	-	-	CCTGCTCATGTGCCCATGTGGAGTGCCCG	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	CRIPAK-90	NM_175918	exon1	c.99_100insCCTGCTCATGTGCCCATGTGGAGTGCCCG	p.P33fs	GTGCCCGCCTGCT	.	450	0	196	0	.	0	0	0	0	0
KIAA1211	57482	hgsc.bcm.edu	37	4	57180576	57180577	+	In_Frame_Ins	INS	-	-	GGAGCGGAG	rs138358443	by1000genomes	TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	KIAA1211-70	NM_020722	exon8	c.908_909insGGAGCGGAG	p.A303delinsAERR	AGGACGCGGAGCG	.	35	17	13	0	.	0	0	0	0	0
ATXN1	6310	broad.mit.edu	37	6	16327915	16327916	+	In_Frame_Ins	INS	-	-	TGC	rs71806515		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	ATXN1-93	NM_001128164	exon7	c.627_628insGCA	p.H209delinsQH	ATGCTGATGCTGC	.	42	9	20	0	.	0	0	0	0	0
AVL9	23080	broad.mit.edu	37	7	32535342	32535343	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	AVL9-90	NM_015060	exon1	c.21_22insG	p.G7fs	GAGAGGCGGGGAT	.	206	7	48	0	.	0	0	0	0	0
VARS	7407	hgsc.bcm.edu	37	6	31762843	31762844	+	Missense_Mutation	DNP	GG	GG	CT	novel		TCGA-OR-A5LN-01A-11D-A29I-10	TCGA-OR-A5LN-10A-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cf6a87e3-f084-4b4c-a978-314c952310a0	c8e44d71-ecbb-4a1f-86ef-5631d9a7442a	.	VARS-93	NM_006295	exon2	c.C151A	p.P51S	GAAAGGGAGTCCT	.	12	0	4	0	G|0.721;T|0.279	0	0	0	0	0