Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
RNF207	388591	ucsc.edu;bcgsc.ca	37	1	6278414	6278414	+	Missense_Mutation	SNP	A	A	G	rs709209	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	RNF207-514	NM_207396	exon17	c.A1718G	p.N573S	GGAACAACGCGGC	.	54	5	105	1	A|0.587;G|0.413	7	7	0	0	0
NOL9	79707	hgsc.bcm.edu	37	1	6614391	6614391	+	Missense_Mutation	SNP	A	A	C	rs6693391	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	NOL9-515	NM_024654	exon1	c.T172G	p.S58A	CGCCGGACGCCTG	.	19	19	0	0	A|0.047;C|0.953	0	0	0	0	0
NBPF1	55672	broad.mit.edu	37	1	16918395	16918395	+	Missense_Mutation	SNP	T	T	C	rs60769486		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	.	.	.	.	.	AAACATTTCTCTT	.	114	8	127	1	.	13	9	4	0	0
PADI3	51702	bcgsc.ca	37	1	17575645	17575645	+	Silent	SNP	A	A	C	rs3763589	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	PADI3-132	NM_016233	exon1	c.A13C	p.R5R	CTGCAGAGAATCG	.	86	6	144	0	A|0.927;C|0.073	0	0	0	0	0
TCTEX1D4	343521	hgsc.bcm.edu	37	1	45271828	45271828	+	Silent	SNP	T	T	C	rs17885815	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	TCTEX1D4-91	NM_001013632	exon2	c.A513G	p.V171V	ACTGCATACCAGC	.	17	17	0	0	T|0.859;C|0.141	0	0	0	0	0
THEM4	117145	hgsc.bcm.edu	37	1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	rs3748805		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	THEM4-522	NM_053055	exon1	c.T50G	p.L17R	GGCGGCAGGCACA	.	9	9	0	0	T|0.073;G|0.921	4	0	4	0	0
TCHH	7062	bcgsc.ca	37	1	152080066	152080066	+	Missense_Mutation	SNP	C	C	T	rs140720320		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	TCHH-72	NM_007113	exon3	c.G5627A	p.R1876Q	CTTTCCCGTTCCT	.	147	5	126	0	C|0.999;T|0.001	0	0	0	0	0
LOR	4014	hgsc.bcm.edu	37	1	153233578	153233578	+	Silent	SNP	C	C	T	rs1143389	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	LOR-90	NM_000427	exon2	c.C153T	p.C51C	TGGCTGCGGCTAC	.	11	11	0	0	C|0.818;T|0.182	0	0	0	0	0
SHCBP1L	81626	hgsc.bcm.edu	37	1	182922067	182922067	+	Missense_Mutation	SNP	G	G	T	rs188196867		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	SHCBP1L-91	NM_030933	exon1	c.C202A	p.L68M	GCCGCAGCCTGGC	.	56	35	2	0	G|0.981;T|0.019	0	0	0	0	0
LAD1	3898	bcgsc.ca	37	1	201355522	201355522	+	Missense_Mutation	SNP	T	T	C	rs4128458	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	LAD1-90	NM_005558	exon3	c.A967G	p.K323E	CCTGCTTTGCCAA	.	71	4	61	0	T|0.405;C|0.595	0	0	0	0	0
CAPN2	824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223949944	223949944	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CAPN2-523	NM_001748	exon14	c.G1623C	p.L541F	CCAGTTGGCAGGA	.	161	77	131	0	.	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228399799	228399799	+	Silent	SNP	C	C	T	rs11582369	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	OBSCN-403	NM_001271223	exon2	c.C315T	p.C105C	CGCGTGCGCCGAG	.	35	30	0	0	C|0.943;T|0.057	0	0	0	0	0
PPYR1	5540	broad.mit.edu;bcgsc.ca	37	10	47087160	47087160	+	Missense_Mutation	SNP	C	C	T	rs149694580		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	PPYR1-524	NM_005972	exon3	c.C377T	p.T126M	CGGTGACGGTCTC	.	289	60	341	1	C|1.000;T|0.000	0	0	0	0	0
FAM170B	170370	broad.mit.edu;bcgsc.ca	37	10	50339962	50339962	+	Missense_Mutation	SNP	A	A	T	rs75297145		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	.	NM_001164484	exon2	c.T548A	p.L183Q	CACTCCAGCAGGT	.	48	5	44	0	A|0.908;T|0.092	0	0	0	0	0
TBC1D12	23232	hgsc.bcm.edu	37	10	96163039	96163039	+	Silent	SNP	C	C	G	rs2477534	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	TBC1D12-68	NM_015188	exon1	c.C669G	p.P223P	CAGCCCCGCCAGC	.	31	19	0	0	C|0.339;G|0.661	0	0	0	0	0
TAF5	6877	hgsc.bcm.edu	37	10	105128134	105128134	+	Missense_Mutation	SNP	T	T	G	rs10883859	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	TAF5-92	NM_006951	exon1	c.T388G	p.S130A	GCGGGCTCCGGAG	.	22	8	0	0	T|0.623;G|0.377	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135000148	135000148	+	Silent	SNP	T	T	C	rs3810965	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	KNDC1-229	NM_152643	exon6	c.T1296C	p.A432A	AGGAGCTAGGCAG	.	8	5	2	0	T|0.607;C|0.393	8	8	0	0	0
PNPLA2	57104	hgsc.bcm.edu	37	11	824789	824789	+	Missense_Mutation	SNP	T	T	C	rs1138693		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	PNPLA2-90	NM_020376	exon10	c.T1442C	p.L481P	ACCAGCTGGCCGG	.	5	5	0	0	T|0.300;C|0.700	98	0	98	0	0
WT1	7490	hgsc.bcm.edu	37	11	32456694	32456694	+	Silent	SNP	C	C	A	rs2234582	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	WT1-6891	NM_024424	exon1	c.G198T	p.P66P	TTGCTGCGGCTCA	.	10	7	0	0	C|0.748;A|0.252	0	0	0	0	0
TMEM132A	54972	hgsc.bcm.edu	37	11	60701987	60701987	+	Silent	SNP	G	G	A	rs7715	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	TMEM132A-227	NM_017870	exon9	c.G1590A	p.S530S	GGCGTCGGATGAG	.	6	4	0	0	G|0.581;A|0.419	0	0	0	0	0
C11orf95	65998	hgsc.bcm.edu	37	11	63531175	63531175	+	Silent	SNP	C	C	G	rs2959886	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	.	NM_001144936	exon5	c.G1752C	p.R584R	CCGCCACCGCGGC	.	40	19	1	0	C|0.216;G|0.784	0	0	0	0	0
KRTAP5-10	387273	hgsc.bcm.edu	37	11	71276681	71276681	+	Silent	SNP	T	T	C	rs113879786	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	KRTAP5-10-91	NM_001012710	exon1	c.T48C	p.G16G	TGGGGGTTGTGGC	.	174	45	89	0	T|0.717;C|0.283	0	0	0	0	0
PHOX2A	401	hgsc.bcm.edu	37	11	71954893	71954893	+	Silent	SNP	G	G	A	rs182932220		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	PHOX2A-90	NM_005169	exon1	c.C156T	p.L52L	GGAGCCGAGCGCG	.	28	9	2	0	G|0.980;A|0.020	0	0	0	0	0
PDE2A	5138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	72308628	72308628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	PDE2A-156	NM_002599	exon5	c.A359G	p.N120S	AGCCCATTGCAGC	.	29	11	55	0	.	3	2	1	0	0
LIPT2	387787	hgsc.bcm.edu	37	11	74204727	74204727	+	Silent	SNP	A	A	G	rs4944895		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	LIPT2-68	NM_001144869	exon1	c.T22C	p.L8L	GCACCAACCGAAC	.	5	5	0	0	A|0.071;G|0.929	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751585	76751604	+	In_Frame_Del	DEL	TGGCCCTTCGGCGTGCAGCT	TGGCCCTTCGGCGTGCAGCT	-	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	TGGCCCTTCGGCGTGCAGCT	TGGCCCTTCGGCGTGCAGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	.	NM_138706	exon4	c.989_1006del	p.330_336del	GCATCCTGGCCCT	.	51	0	2	0	.	0	0	0	0	0
SLC37A2	219855	bcgsc.ca	37	11	124955032	124955032	+	Silent	SNP	T	T	C	rs948268	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	SLC37A2-92	NM_001145290	exon14	c.T1245C	p.D415D	TGCTGATCTGGTG	.	79	5	75	0	T|0.312;C|0.688	0	0	0	0	0
DCP1B	196513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2058258	2058258	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	DCP1B-91	NM_152640	exon8	c.C1767G	p.L589L	CTGAATGAGGTAC	.	70	54	110	0	.	0	0	0	0	0
DENND5B	160518	bcgsc.ca	37	12	31605044	31605044	+	Missense_Mutation	SNP	G	G	T	rs1056320	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	DENND5B-24	NM_144973	exon5	c.C1459A	p.H487N	CACAATGCAGTTT	.	194	6	137	1	G|0.818;T|0.182	6	6	0	0	0
AVPR1A	552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	63544384	63544384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	AVPR1A-946	NM_000706	exon1	c.G233A	p.R78Q	GGCGTCCGGTGCA	.	171	91	49	0	.	3	0	3	0	0
FAM109A	144717	hgsc.bcm.edu	37	12	111800827	111800835	+	In_Frame_Del	DEL	GCCACCCCC	GCCACCCCC	-	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	GCCACCCCC	GCCACCCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	FAM109A-90	NM_001177996	exon4	c.436_444del	p.146_148del	GGCCATGCCACCC	.	34	0	2	1	.	0	0	0	0	0
RNFT2	84900	hgsc.bcm.edu	37	12	117187907	117187907	+	Silent	SNP	T	T	C	rs111256849	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	.	NM_001109903	exon4	c.T345C	p.H115H	CCACCATTTCCAC	.	28	13	1	0	T|0.767;C|0.233	0	0	0	0	0
PITPNM2	57605	bcgsc.ca	37	12	123471094	123471094	+	Silent	SNP	G	G	A	rs12811109	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	PITPNM2-228	NM_020845	exon24	c.C3615T	p.H1205H	GGCCGCGTGCACG	.	185	9	120	1	G|0.860;A|0.140	6	6	0	0	0
MEDAG	84935	hgsc.bcm.edu	37	13	31480827	31480827	+	Missense_Mutation	SNP	A	A	G	rs9531945	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	.	NM_032849	exon1	c.A175G	p.R59G	GTGGCCAGGCCCG	.	12	12	0	0	A|0.219;G|0.781	0	0	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	85	7	23	0	.	15	15	0	0	0
PNN	5411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	39650733	39650733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	PNN-91	NM_002687	exon9	c.C1820A	p.S607Y	GTAGTTCCAGTAG	.	212	100	213	1	.	89	44	45	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	.	NM_018139	exon1	c.G1185C	p.A395A	GTCCTCCGCGCGA	.	12	12	0	0	C|0.569;G|0.431	0	0	0	0	0
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	65241872	65241872	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	SPTB-100	NM_000347	exon22	c.C4813A	p.L1605I	CGTAGAGCTCCTG	.	137	10	105	0	.	2	2	0	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644147	104644147	+	Silent	SNP	C	C	T	rs11621644	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	KIF26A-24	NM_015656	exon12	c.C5022T	p.S1674S	CGCCTCCTCCGCC	.	10	6	2	0	C|0.681;T|0.319	0	0	0	0	0
MYO5A	4644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52689550	52689550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	MYO5A-93	NM_000259	exon10	c.G1167T	p.K389N	GATGGGCTTGATG	.	170	64	167	0	.	1	1	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	4	4	0	0	A|0.226;C|0.774	0	0	0	0	0
ARID3B	10620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74865529	74865529	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	ARID3B-90	NM_006465	exon4	c.C681T	p.V227V	CTTCGTCTTTATG	.	97	43	101	0	.	1	1	0	0	0
MESP2	145873	hgsc.bcm.edu	37	15	90320135	90320146	+	In_Frame_Del	DEL	GGGCAGGGGCAG	GGGCAGGGGCAG	-	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	GGGCAGGGGCAG	GGGCAGGGGCAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	MESP2-68	NM_001039958	exon1	c.547_558del	p.183_186del	GGGCAAGGGCAGG	.	11	10	1	0	.	0	0	0	0	0
GGA2	23062	hgsc.bcm.edu	37	16	23521643	23521643	+	Silent	SNP	G	G	C	rs1071685	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	GGA2-91	NM_015044	exon1	c.C90G	p.L30L	CTCACTGAGCCAC	.	5	5	0	0	G|0.500;C|0.500	0	0	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	IRX3-90	NM_024336	exon2	c.T1265C	p.L422P	GGGTGCAGGCGGG	.	10	10	0	0	T|0.035;G|0.004	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	8	8	0	0	G|0.001;A|0.999	0	0	0	0	0
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	71012910	71012910	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	HYDIN-92	NM_001270974	exon30	c.C4545A	p.A1515A	TTTCCTGGCTTGA	.	214	36	122	0	.	0	0	0	0	0
MARVELD3	91862	broad.mit.edu	37	16	71660364	71660365	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	MARVELD3-91	NM_001017967	exon1	c.232_233del	p.78_78del	GAGAGGGAGAGAG	.	413	7	101	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	15	0	3	0	.	0	0	0	0	0
RPL13	6137	hgsc.bcm.edu	37	16	89627671	89627671	+	Silent	SNP	C	C	T	rs174035	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	RPL13-90	NM_001243131	exon3	c.C141T	p.A47A	CATCGCCCCGCGC	.	13	13	0	0	C|0.846;T|0.154	312	17	295	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	GLTPD2-68	NM_001014985	exon4	c.C627A	p.D209E	CCCGGACGCGGGC	.	21	21	0	0	C|0.015;A|0.985	0	0	0	0	0
MYO15A	51168	hgsc.bcm.edu	37	17	18024266	18024266	+	Missense_Mutation	SNP	T	T	G	rs2955367	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	MYO15A-97	NM_016239	exon2	c.T2152G	p.W718G	GCCAGCTGGTGGG	.	9	6	2	0	T|0.570;G|0.430	0	0	0	0	0
C17orf96	100170841	hgsc.bcm.edu	37	17	36830459	36830459	+	Missense_Mutation	SNP	G	G	A	rs111565436		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	.	NM_001130677	exon1	c.C290T	p.P97L	ACGCCGGGCCGCC	.	5	5	0	0	G|0.750;A|0.250	0	0	0	0	0
CDK5RAP3	80279	ucsc.edu;bcgsc.ca	37	17	46053334	46053334	+	Silent	SNP	A	A	G	rs202125432	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CDK5RAP3-226	NM_176096	exon8	c.A753G	p.E251E	GGTGGAACGACCC	.	69	12	100	0	A|0.949;G|0.051	45	45	0	0	0
C17orf47	284083	broad.mit.edu	37	17	56620273	56620273	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	C17orf47-135	NM_001038704	exon1	c.C1275A	p.S425S	CCATGAGGAGTCA	.	82	3	151	0	.	0	0	0	0	0
CSHL1	1444	bcgsc.ca	37	17	61987570	61987570	+	Missense_Mutation	SNP	G	G	T	rs2727307	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CSHL1-90	NM_022579	exon4	c.C423A	p.D141E	GTGATAGTCATCG	.	239	8	455	1	G|0.670;T|0.330	0	0	0	0	0
CSHL1	1444	bcgsc.ca	37	17	61987576	61987576	+	Silent	SNP	G	G	A	rs2246207	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CSHL1-90	NM_022579	exon4	c.C417T	p.S139S	GTCATCGCTGTCC	.	242	8	446	1	G|0.566;A|0.434	0	0	0	0	0
FOXJ1	2302	hgsc.bcm.edu	37	17	74133974	74133974	+	Silent	SNP	C	C	T	rs894542	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	FOXJ1-227	NM_001454	exon3	c.G726A	p.T242T	ATTCACCGTCAGC	.	13	12	0	0	C|0.925;T|0.075	0	0	0	0	0
SOGA2	23255	broad.mit.edu	37	18	8825271	8825271	+	Missense_Mutation	SNP	C	C	T	rs115783507	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	.	NM_015210	exon15	c.C3763T	p.R1255C	GCACGGCGCCCCC	.	71	4	82	0	C|0.998;T|0.002	0	0	0	0	0
APC2	10297	hgsc.bcm.edu	37	19	1457002	1457002	+	Missense_Mutation	SNP	G	G	C	rs143870588		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	APC2-290	NM_005883	exon9	c.G967C	p.G323R	CTCCACGGCACCG	.	10	5	0	0	G|0.988;C|0.012	0	0	0	0	0
FAM108A1	81926	broad.mit.edu	37	19	1881527	1881527	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	FAM108A1-90	NM_031213	exon2	c.39delC	p.F13fs	GCAGCAGAAGAGG	.	78	10	6	0	.	0	0	0	0	0
FAM108A1	81926	broad.mit.edu	37	19	1881529	1881530	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	FAM108A1-90	NM_031213	exon2	c.36_37del	p.12_13del	AGCAGAAGAGGCA	.	78	10	6	0	.	0	0	0	0	0
EEF2	1938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3976662	3976662	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	EEF2-90	NM_001961	exon15	c.G2467C	p.D823H	AGGGGTCTCCGGG	.	56	25	71	0	.	1945	1140	803	0	2
ECSIT	51295	ucsc.edu	37	19	11617126	11617126	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	ECSIT-91	NM_016581	exon8	c.T1169G	p.V390G	CGGAAGACCACGG	.	57	2	62	0	.	157	129	28	0	0
CCDC105	126402	hgsc.bcm.edu	37	19	15133926	15133926	+	Missense_Mutation	SNP	C	C	A	rs8112667	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CCDC105-91	NM_173482	exon7	c.C1495A	p.P499T	GCGGACCCCTAGT	.	60	34	2	0	C|0.671;A|0.329	0	0	0	0	0
PGLS	25796	hgsc.bcm.edu	37	19	17622614	17622614	+	Silent	SNP	C	C	T	rs11086075	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	PGLS-90	NM_012088	exon1	c.C133T	p.L45L	CTCGGCCTGTCGG	.	27	11	0	0	C|0.617;T|0.383	0	0	0	0	0
MAP1S	55201	hgsc.bcm.edu	37	19	17837425	17837425	+	Missense_Mutation	SNP	C	C	G	rs17710707	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	MAP1S-90	NM_018174	exon5	c.C1232G	p.S411C	TGGCCTCTGTGTG	.	39	20	0	0	C|0.883;G|0.117	2	1	1	0	0
RGS9BP	388531	hgsc.bcm.edu	37	19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	rs259290	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	RGS9BP-90	NM_207391	exon1	c.G286T	p.A96S	CGACGCGCGCTGG	.	13	13	0	0	G|0.540;T|0.460	0	0	0	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	31	31	1	0	G|0.349;A|0.651	0	0	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	43	14	1	0	T|0.545;C|0.455	1	1	0	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	26	16	2	0	C|0.254;G|0.746	0	0	0	0	0
PRR24	255783	hgsc.bcm.edu	37	19	47778412	47778412	+	Missense_Mutation	SNP	G	G	T	rs1055218		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	.	NM_178511	exon1	c.G236T	p.R79L	CTGCCCGCCCGGG	.	14	14	0	0	G|0.585;T|0.415	1	0	1	0	0
KCNA7	3743	hgsc.bcm.edu	37	19	49575618	49575618	+	Silent	SNP	A	A	G	rs71352730	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	KCNA7-90	NM_031886	exon1	c.T225C	p.G75G	CCGCCCACCGGAC	.	23	10	2	0	A|0.868;G|0.132	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	ASPDH-90	NM_001114598	exon6	c.A797G	p.Q266R	AGGCTCTGCCAGA	.	16	7	1	0	T|0.228;C|0.772	0	0	0	0	0
ZNF628	89887	hgsc.bcm.edu	37	19	55993260	55993260	+	Missense_Mutation	SNP	A	A	G	rs34864744		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	ZNF628-22	NM_033113	exon3	c.A700G	p.T234A	CCGGGTACCGCCT	.	25	25	0	0	A|0.270;G|0.730	0	0	0	0	0
ZSCAN18	65982	hgsc.bcm.edu	37	19	58596109	58596109	+	Silent	SNP	A	A	T	rs146022713		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	ZSCAN18-90	NM_001145542	exon7	c.T1644A	p.G548G	TGGGGGACCGCCC	.	7	6	0	0	A|0.990;T|0.010	29	21	8	0	0
FAM110C	642273	hgsc.bcm.edu	37	2	45895	45895	+	Missense_Mutation	SNP	A	A	G	rs4241318		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	FAM110C-68	NM_001077710	exon1	c.T491C	p.I164T	TCGGGGATTGCGG	.	11	11	0	0	A|0.011;G|0.989	0	0	0	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	16	10	0	0	G|0.301;C|0.699	0	0	0	0	0
PXDN	7837	hgsc.bcm.edu	37	2	1748117	1748117	+	Silent	SNP	C	C	G	rs140134102	by1000genomes	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	PXDN-166	NM_012293	exon1	c.G111C	p.P37P	GCGGCTCGGACAC	.	11	7	0	0	C|0.967;G|0.033	0	0	0	0	0
HEATR5B	54497	bcgsc.ca	37	2	37280711	37280711	+	Silent	SNP	T	T	C	rs10202107	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	HEATR5B-142	NM_019024	exon17	c.A2439G	p.Q813Q	TTTAGCTTGTTTA	.	162	7	249	0	T|0.989;C|0.011	1	1	0	0	0
SOS1	6654	bcgsc.ca	37	2	39294787	39294787	+	Silent	SNP	T	T	G	rs7609455	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	SOS1-851	NM_005633	exon2	c.A195C	p.R65R	AGCACTTCGGGGC	.	117	5	140	1	T|0.953;G|0.047	0	0	0	0	0
CEP68	23177	broad.mit.edu	37	2	65296662	65296662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CEP68-91	NM_015147	exon2	c.G84T	p.E28D	CAGGGAGCGGGAG	.	92	5	142	0	.	5	5	0	0	0
NOTO	344022	hgsc.bcm.edu	37	2	73429808	73429808	+	Missense_Mutation	SNP	G	G	C	rs1864492	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	.	NM_001134462	exon1	c.G14C	p.R5T	GCCCCAGGCCGCG	.	11	10	0	0	G|0.286;C|0.714	0	0	0	0	0
CD8B	926	hgsc.bcm.edu	37	2	87088964	87088964	+	Silent	SNP	A	A	G	rs62146888	byfrequency;by1000genomes	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CD8B-92	NM_004931	exon1	c.T25C	p.L9L	CGGCCAAGAGGAG	.	7	7	0	0	A|0.476;G|0.524	0	0	0	0	0
SH3RF3	344558	hgsc.bcm.edu	37	2	109746039	109746039	+	Missense_Mutation	SNP	G	G	A	rs34609468	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	SH3RF3-24	NM_001099289	exon1	c.G43A	p.A15T	GCGGCCGCCGCTG	.	6	6	0	0	G|0.842;A|0.158	0	0	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	.	NM_023016	exon1	c.A126G	p.L42L	CGCCCTAGGCGGC	.	21	21	0	0	A|0.029;G|0.971	0	0	0	0	0
C1QL2	165257	hgsc.bcm.edu	37	2	119915509	119915509	+	Silent	SNP	G	G	T	rs1317848	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	C1QL2-91	NM_182528	exon1	c.C337A	p.R113R	CGGGCCGCCCCGA	.	20	15	0	0	G|0.681;T|0.319	0	0	0	0	0
MYO7B	4648	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	128394466	128394466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	MYO7B-47	NM_001080527	exon46	c.G6227T	p.R2076L	GCAGCCGCCTGCT	.	63	4	59	0	.	2	2	0	0	0
SCN7A	6332	broad.mit.edu;bcgsc.ca	37	2	167263141	167263141	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	SCN7A-67	NM_002976	exon25	c.T3998C	p.M1333T	ACTGTCATAGGCA	.	243	9	208	0	.	0	0	0	0	0
SCN7A	6332	broad.mit.edu	37	2	167273276	167273276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	SCN7A-67	NM_002976	exon20	c.G3355A	p.E1119K	CATTTTCCCATAG	.	284	8	264	0	.	0	0	0	0	0
SIRPD	128646	broad.mit.edu;mdanderson.org	37	20	1515083	1515083	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	SIRPD-227	NM_178460	exon4	c.G582T	p.L194F	TGACAGCAAGCCT	.	20	7	21	0	.	0	0	0	0	0
C20orf26	26074	ucsc.edu;bcgsc.ca	37	20	20123574	20123574	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	C20orf26-94	NM_015585	exon9	c.T933C	p.D311D	TCCAGATACCATG	.	326	130	317	2	.	0	0	0	0	0
ENTPD6	955	bcgsc.ca	37	20	25193949	25193949	+	Silent	SNP	G	G	A	rs2076561	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	ENTPD6-90	NM_001247	exon5	c.G504A	p.P168P	CATTCCGTTCGAC	.	159	6	128	0	G|0.708;A|0.292	31	31	0	0	0
NINL	22981	bcgsc.ca	37	20	25456888	25456888	+	Silent	SNP	A	A	G	rs437635	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	NINL-94	NM_025176	exon17	c.T3039C	p.S1013S	CTCCACACTGTGC	.	112	5	87	0	A|0.506;G|0.494	3	3	0	0	0
TMEM189	387521	hgsc.bcm.edu	37	20	48770159	48770159	+	Missense_Mutation	SNP	T	T	C	rs232733		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	TMEM189-22	NM_199129	exon1	c.A16G	p.N6D	GCCAGTTCTCGGC	.	11	11	0	0	C|0.999;T|0.001	0	0	0	0	0
CASS4	57091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	55012236	55012236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CASS4-25	NM_020356	exon2	c.C53T	p.A18V	CCAGGGCACTTTA	.	138	59	123	0	.	0	0	0	0	0
ZNF831	128611	bcgsc.ca	37	20	57782004	57782004	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	ZNF831-126	NM_178457	exon3	c.G3920T	p.S1307I	GAGCCAGTAGACT	.	138	6	115	0	.	0	0	0	0	0
KRTAP10-4	386672	ucsc.edu	37	21	45993851	45993851	+	Silent	SNP	C	C	T	rs543299		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	KRTAP10-4-90	NM_198687	exon1	c.C216T	p.C72C	GACCTGCGAGCCC	.	23	19	23	3	C|1.000;|0.000	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	SCARF2-341	NM_153334	exon11	c.C2181G	p.R727R	CGGGGGGCGCGGC	.	10	10	0	0	G|0.826;C|0.174	0	0	0	0	0
BCR	613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	23627302	23627302	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	BCR-1349	NM_021574	exon10	c.C2320G	p.P774A	GCAGTGCCCAACA	.	224	109	207	1	.	14	8	6	0	0
CHEK2	11200	broad.mit.edu	37	22	29091841	29091841	+	Silent	SNP	G	G	A	rs79357544		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CHEK2-1515	NM_001005735	exon12	c.C1245T	p.S415S	AATCTTGGAGTGC	.	130	15	190	2	.	1	1	0	0	0
TMPRSS6	164656	bcgsc.ca	37	22	37462936	37462936	+	Missense_Mutation	SNP	A	A	G	rs855791	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	TMPRSS6-292	NM_153609	exon17	c.T2207C	p.V736A	CGATAGACCTCGC	.	94	7	172	2	G|0.638;N|0.000	0	0	0	0	0
SUN2	25777	bcgsc.ca	37	22	39134715	39134715	+	Silent	SNP	T	T	C	rs1062687	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	SUN2-154	NM_001199579	exon16	c.A1887G	p.Q629Q	GAAGCCTTGTGGC	.	69	5	74	0	T|0.441;G|0.116;C|0.264;A|0.179	65	65	0	0	0
MGAT3	4248	broad.mit.edu	37	22	39883963	39883963	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	MGAT3-90	NM_002409	exon2	c.T611G	p.V204G	GGGAGGTGCCGCG	.	114	24	47	8	.	0	0	0	0	0
GPR62	118442	hgsc.bcm.edu	37	3	51990315	51990315	+	Missense_Mutation	SNP	A	A	G	rs28651222		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	GPR62-91	NM_080865	exon1	c.A647G	p.H216R	GACTCCACTCGGA	.	4	4	0	0	A|0.003;G|0.997	0	0	0	0	0
CHDH	55349	hgsc.bcm.edu	37	3	53857917	53857917	+	Missense_Mutation	SNP	T	T	G	rs9001	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CHDH-91	NM_018397	exon3	c.A119C	p.E40A	CTGTACTCGTCCC	.	19	13	0	0	T|0.749;G|0.251	1	0	1	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	15	15	0	0	G|0.237;C|0.763	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	18	18	0	0	G|0.252;C|0.748	0	0	0	0	0
CASR	846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	122003707	122003707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CASR-97	NM_001178065	exon7	c.G2936A	p.G979D	TCTTTGGCAGCGG	.	376	158	366	0	.	0	0	0	0	0
EFCC1	79825	hgsc.bcm.edu	37	3	128720487	128720487	+	Missense_Mutation	SNP	A	A	G	rs1871951	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	.	NM_024768	exon1	c.A16G	p.T6A	GTCAGCACGGGCG	.	12	12	0	0	A|0.315;G|0.685	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388726	1388726	+	Missense_Mutation	SNP	T	T	C	rs199689156	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CRIPAK-90	NM_175918	exon1	c.T427C	p.C143R	TGCCCATGCGGAG	.	152	22	23	0	T|0.980;C|0.020	9	9	0	0	0
CRIPAK	285464	bcgsc.ca	37	4	1388817	1388817	+	Missense_Mutation	SNP	C	C	G	rs71299249	alternate_allele	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CRIPAK-90	NM_175918	exon1	c.C518G	p.P173R	CGTGCCCATGTGG	.	193	51	29	1	CATGT|0.500;GACGC|0.500	122	122	0	0	0
CRIPAK	285464	bcgsc.ca	37	4	1388819	1388819	+	Missense_Mutation	SNP	T	T	C	rs144797159	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CRIPAK-90	NM_175918	exon1	c.T520C	p.C174R	TGCCCATGTGGAG	.	190	43	30	1	T|0.950;C|0.050	103	103	0	0	0
MSX1	4487	hgsc.bcm.edu	37	4	4861745	4861745	+	Missense_Mutation	SNP	C	C	G	rs36059701		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	MSX1-90	NM_002448	exon1	c.C119G	p.A40G	CCACGGCAGCCGC	.	9	5	1	0	C|0.867;G|0.133	1	1	0	0	0
SOD3	6649	hgsc.bcm.edu	37	4	24801354	24801354	+	Silent	SNP	C	C	T	rs8192291	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	SOD3-90	NM_003102	exon2	c.C211T	p.L71L	GCCACGCTGGACG	.	37	21	0	0	C|0.777;T|0.223	1	0	1	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	rs10008444		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	ZAR1-90	NM_175619	exon1	c.G126C	p.Q42H	GCAGCAGCGCGGC	.	16	16	0	0	G|0.025;C|0.975	0	0	0	0	0
SHROOM3	57619	hgsc.bcm.edu	37	4	77662248	77662248	+	Silent	SNP	G	G	A	rs60216375	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	SHROOM3-93	NM_020859	exon5	c.G2922A	p.S974S	GGCGTCGGCCTCC	.	10	10	0	0	G|0.531;A|0.469	0	0	0	0	0
RAB3C	115827	ucsc.edu;bcgsc.ca	37	5	57913553	57913553	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	RAB3C-228	NM_138453	exon2	c.C108T	p.I36I	CATCATCGGCAAT	.	239	98	236	3	.	0	0	0	0	0
TMEM171	134285	bcgsc.ca	37	5	72419456	72419456	+	Missense_Mutation	SNP	C	C	G	rs637450	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	TMEM171-68	NM_173490	exon2	c.C256G	p.R86G	CAGCTCCGTGCAG	.	86	5	77	0	C|0.636;G|0.364	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	.	NM_175873	exon1	c.G371C	p.R124P	TGGTCCGGGTGCC	.	25	25	0	0	G|0.980;C|0.020	0	0	0	0	0
PCDHB13	56123	hgsc.bcm.edu	37	5	140595625	140595625	+	Missense_Mutation	SNP	G	G	A	rs76927815		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	PCDHB13-93	NM_018933	exon1	c.G1930A	p.V644I	GTGCTGGTCAAGG	.	170	68	14	0	G|0.500;A|0.500	5	3	2	0	0
PWWP2A	114825	hgsc.bcm.edu	37	5	159546013	159546013	+	Missense_Mutation	SNP	T	T	C	rs56806495	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	PWWP2A-68	NM_052927	exon1	c.A383G	p.E128G	CGCTCCTCGGGAG	.	13	6	2	0	T|0.943;C|0.057	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086211	5086211	+	Silent	SNP	G	G	C	rs584962		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	PPP1R3G-136	NM_001145115	exon1	c.G492C	p.L164L	GCGCCTGCGAAGC	.	12	12	0	0	G|0.000;C|1.000	1	0	1	0	0
RREB1	6239	hgsc.bcm.edu	37	6	7230680	7230680	+	Missense_Mutation	SNP	G	G	T	rs9502564	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	RREB1-144	NM_001003700	exon10	c.G2348T	p.G783V	GCGGGGGCCACAA	.	35	18	0	0	G|0.546;T|0.454	0	0	0	0	0
ATXN1	6310	broad.mit.edu	37	6	16327913	16327915	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	ATXN1-93	NM_001128164	exon7	c.627_629del	p.209_210del	TGATGCTGATGCT	.	53	10	31	0	.	0	0	0	0	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	20	20	0	0	T|0.089;G|0.911	0	0	0	0	0
PREP	5550	bcgsc.ca	37	6	105726036	105726036	+	Missense_Mutation	SNP	C	C	T	rs1051484	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	PREP-93	NM_002726	exon15	c.G2116A	p.V706I	AGTCGACGTTCAG	.	75	5	110	0	C|0.673;T|0.327	26	26	0	0	0
INHBA	3624	ucsc.edu	37	7	41729744	41729744	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	INHBA-703	NM_002192	exon3	c.A785T	p.K262M	TCTTTCTTCTTCT	.	42	4	40	0	.	0	0	0	0	0
RAMP3	10268	hgsc.bcm.edu	37	7	45197433	45197433	+	Silent	SNP	G	G	A	rs67477213		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	RAMP3-90	NM_005856	exon1	c.G6A	p.E2E	CATGGAGACTGGA	.	9	6	0	0	G|0.760;A|0.240	7	2	5	0	0
KCP	375616	hgsc.bcm.edu	37	7	128550681	128550681	+	Splice_Site	DEL	C	C	-	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	KCP-68	NM_001135914	exon2	c.49+1G>-	.	CCAGGGCCCCCGA	.	10	10	0	0	.	0	0	0	0	0
ZNF467	168544	hgsc.bcm.edu	37	7	149462337	149462337	+	Silent	SNP	G	G	A	rs855667	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	ZNF467-90	NM_207336	exon5	c.C1254T	p.P418P	CACCACGGGATCG	.	16	5	0	0	G|0.763;A|0.237	0	0	0	0	0
ZNF775	285971	hgsc.bcm.edu	37	7	150094972	150094972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	ZNF775-90	NM_173680	exon3	c.A1403G	p.H468R	GCATCCACACGGG	.	70	20	0	0	.	1	1	0	0	0
EN2	2020	hgsc.bcm.edu	37	7	155251183	155251183	+	Silent	SNP	G	G	A	rs77846527		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	EN2-90	NM_001427	exon1	c.G111A	p.P37P	CAGCCCGGGCGAA	.	27	15	1	0	G|0.911;A|0.089	0	0	0	0	0
GPR124	25960	hgsc.bcm.edu	37	8	37699516	37699516	+	Silent	SNP	C	C	T	rs7010546	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	GPR124-157	NM_032777	exon19	c.C3660T	p.G1220G	GAGCGGCAGTCTG	.	6	6	0	0	C|0.479;G|0.000;T|0.520	1	0	1	0	0
KAT6A	7994	bcgsc.ca;mdanderson.org	37	8	41790884	41790884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	.	NM_001099412	exon18	c.G4854A	p.M1618I	CTGCATCATGCTG	.	45	15	54	0	.	1	1	0	0	0
CRH	1392	hgsc.bcm.edu	37	8	67089425	67089425	+	Silent	SNP	T	T	G	rs6159	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CRH-90	NM_000756	exon2	c.A288C	p.G96G	GCTGCCTCCGGCG	.	32	11	3	0	T|0.642;G|0.358	0	0	0	0	0
KIAA1429	25962	ucsc.edu	37	8	95547119	95547119	+	Silent	SNP	T	T	G	rs2304764	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	KIAA1429-92	NM_015496	exon5	c.A432C	p.P144P	TGGCGGTGGAGGT	.	40	10	26	2	T|0.627;G|0.373	0	0	0	0	0
MTDH	92140	hgsc.bcm.edu	37	8	98656966	98656966	+	Missense_Mutation	SNP	G	G	T	rs17854373	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	MTDH-91	NM_178812	exon1	c.G232T	p.A78S	GCCGGCGCCCGCA	.	45	19	0	0	G|0.973;T|0.027	1	0	1	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	12	12	2	2	.	0	0	0	0	0
TRIB1	10221	hgsc.bcm.edu	37	8	126443348	126443348	+	Silent	SNP	C	C	T	rs2385113	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	TRIB1-358	NM_025195	exon1	c.C204T	p.S68S	CTGCAGCCCGCAG	.	6	6	0	0	C|0.640;T|0.360	0	0	0	0	0
FAM83H	286077	hgsc.bcm.edu	37	8	144810138	144810138	+	Missense_Mutation	SNP	G	G	A	rs1137806		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	FAM83H-92	NM_198488	exon5	c.C1493T	p.P498L	AGCTCCGGGAAGC	.	17	7	0	0	G|0.853;A|0.147	1	0	1	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	20	20	0	0	G|0.992;C|0.006	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	21	20	0	0	G|0.572;C|0.428	0	0	0	0	0
TAF1L	138474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	32630736	32630736	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	TAF1L-870	NM_153809	exon1	c.G4842A	p.E1614E	CACAATCTCCTGA	.	235	101	240	0	.	0	0	0	0	0
SPATA31A3	727830	bcgsc.ca	37	9	40705751	40705751	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	.	NM_001083124	exon4	c.C3408T	p.V1136V	CCCAGTCAGGAAA	.	302	162	318	2	.	0	0	0	0	0
FXN	2395	hgsc.bcm.edu	37	9	71650752	71650752	+	Silent	SNP	A	A	G	rs2481598	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	FXN-251	NM_000144	exon1	c.A54G	p.P18P	CAGCCCAGCCCAG	.	5	5	0	0	A|0.038;G|0.962	0	0	0	0	0
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113192698	113192698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	SVEP1-75	NM_153366	exon33	c.G5386A	p.E1796K	CATTTTCCGGATT	.	133	55	94	0	.	0	0	0	0	0
WDR34	89891	hgsc.bcm.edu	37	9	131418828	131418828	+	Missense_Mutation	SNP	A	A	C	rs4837292		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	WDR34-92	NM_052844	exon1	c.T178G	p.W60G	TCTCCCAGCGGAT	.	5	5	0	0	A|0.006;C|0.994	0	0	0	0	0
PRRC2B	84726	bcgsc.ca	37	9	134351500	134351500	+	Silent	SNP	C	C	T	rs113338693	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	PRRC2B-24	NM_013318	exon15	c.C3984T	p.P1328P	GGGACCCGAGGAG	.	74	4	56	0	C|0.943;T|0.057	2	2	0	0	0
SEC16A	9919	broad.mit.edu	37	9	139369408	139369408	+	Missense_Mutation	SNP	C	C	T	rs200238338	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	.	NM_014866	exon3	c.G2660A	p.G887E	GGAATCCCAGACA	.	76	4	60	0	C|0.991;T|0.008	2	2	0	0	0
TIMP1	7076	bcgsc.ca	37	X	47444985	47444985	+	Silent	SNP	T	T	C	rs4898	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	TIMP1-650	NM_003254	exon5	c.T372C	p.F124F	CAGTTTTGTGGCT	.	89	5	79	0	T|0.536;C|0.464	1873	1870	3	0	0
GPRASP2	114928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101971586	101971586	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	GPRASP2-131	NM_138437	exon4	c.G1789T	p.E597X	TCTGAAGAGTTTG	.	170	155	142	0	.	12	0	12	0	0
SOWAHD	347454	hgsc.bcm.edu	37	X	118892888	118892888	+	Silent	SNP	G	G	C	rs2782222	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	.	NM_001105576	exon1	c.G258C	p.A86A	TCCTGCGGGGTGG	.	7	7	0	0	G|0.401;C|0.599	0	0	0	0	0
ENOX2	10495	bcgsc.ca	37	X	129790662	129790662	+	Missense_Mutation	SNP	C	C	T	rs200580901		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	ENOX2-131	NM_182314	exon11	c.G1109A	p.R370H	ATGTTGCGAATTT	.	45	4	30	0	C|1.000;T|0.000	0	0	0	0	0
MCF2	4168	bcgsc.ca	37	X	138686878	138686878	+	Missense_Mutation	SNP	G	G	A	rs61751333	byfrequency	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	MCF2-227	NM_001171876	exon19	c.C1933T	p.H645Y	GAGCATGAGCACA	.	43	4	43	0	G|0.988;A|0.012	25	25	0	0	0
MECP2	4204	broad.mit.edu	37	X	153357653	153357653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	MECP2-226	NM_004992	exon2	c.G15T	p.M5I	CCCTAACATCCCA	.	45	7	26	2	.	0	0	0	0	0
CYP17A1	1586	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	104590691	104590692	+	Nonsense_Mutation	INS	-	-	AGCTTACTGACGGTGAG	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CYP17A1-90	NM_000102	exon8	c.1295_1296insCTCACCGTCAGTAAGCT	p.Y432_L433delinsSHRQX	GGCAAATAGCTTA	.	156	16	182	0	.	0	0	0	0	0
C11orf80	79703	hgsc.bcm.edu	37	11	66512290	66512291	+	In_Frame_Ins	INS	-	-	GGC	rs72214360		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	.	NM_024650	exon1	c.77_78insGGC	p.G26delinsGA	AGGAGGGGGCGGC	.	12	11	0	0	.	0	0	0	0	0
NCOR2	9612	broad.mit.edu	37	12	124824721	124824722	+	In_Frame_Ins	INS	-	-	GCCGCTGCT	rs143952466	bycluster;by1000genomes	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	NCOR2-229	NM_006312	exon39	c.5518_5519insAGCAGCGGC	p.G1840delinsSSGG	CACCCCCGCCGCT	.	42	12	10	0	.	0	0	0	0	0
JPH4	84502	broad.mit.edu	37	14	24044983	24044984	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	JPH4-92	NM_001146028	exon3	c.1062_1063insG	p.G354fs	AACCTTGCCCCGC	.	220	2	29	0	.	0	0	0	0	0
CLEC11A	6320	hgsc.bcm.edu	37	19	51228371	51228372	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	CLEC11A-91	NM_002975	exon4	c.619_620insG	p.R207fs	ACGGCGCGGGGCG	.	19	8	0	0	.	0	0	0	0	0
LURAP1L	286343	broad.mit.edu	37	9	12775861	12775862	+	In_Frame_Ins	INS	-	-	GGCGGCGGC	rs139315731	bycluster;by1000genomes	TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	.	NM_203403	exon1	c.147_148insGGCGGCGGC	p.G49delinsGGGG	TGGTGGTGGCGGC	.	45	18	59	0	.	0	0	0	0	0
TTLL11	158135	hgsc.bcm.edu	37	9	124855330	124855331	+	In_Frame_Ins	INS	-	-	TGGCCT	rs201653732		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	TTLL11-112	NM_001139442	exon1	c.368_369insAGGCCA	p.T123delinsKAT	TCCGCTGTGGCCT	.	21	10	0	0	-|0.843;TGGCCT|0.157	0	0	0	0	0
TRIM74	378108	bcgsc.ca	37	7	75028240	75028241	+	Missense_Mutation	DNP	TG	TG	CA	novel		TCGA-OR-A5LG-01A-11D-A29I-10	TCGA-OR-A5LG-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a39e8bc9-757d-4536-b301-458fc7ec992d	6b9e8d41-7044-4151-b4d6-e211b0e7a923	.	TRIM74-40	NM_198853	exon2	c.G24A	p.L8P	CCTGCTGGAGCTG	.	842	0	864	0	G|0.500;A|0.500	0	0	0	0	0