Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
C1orf170	84808	bcgsc.ca	37	1	915360	915360	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	C1orf170-68	.	.	.	.	CGGCTCAGAGGCA	.	304	23	394	5	.	0	0	0	0	0
SRM	6723	hgsc.bcm.edu	37	1	11119899	11119899	+	Silent	SNP	T	T	C	rs7545802		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SRM-90	NM_003132	exon1	c.A102G	p.S34S	CTGCAGTGACAGG	.	4	4	0	0	T|0.001;C|0.999	1	0	1	0	0
SLC9A1	6548	broad.mit.edu;bcgsc.ca	37	1	27436203	27436203	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SLC9A1-91	NM_003047	exon3	c.C879T	p.L293L	GAAGCCGAGGAAG	.	206	19	220	1	.	0	0	0	0	0
KANK4	163782	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	62713267	62713267	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	KANK4-74	NM_181712	exon9	c.A2760T	p.A920A	GACATCTGCCTGG	.	140	44	178	3	.	0	0	0	0	0
CLCA4	22802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	87033202	87033202	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	CLCA4-92	NM_012128	exon7	c.T1050C	p.D350D	CTTTGATAGTACT	.	142	49	147	0	.	0	0	0	0	0
SLC25A24	29957	bcgsc.ca	37	1	108728484	108728484	+	Silent	SNP	T	T	C	rs862493	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SLC25A24-91	NM_013386	exon2	c.A276G	p.K92K	TGCCAATTTCATT	.	90	6	74	0	C|0.183;N|0.000	2	2	0	0	0
POGZ	23126	hgsc.bcm.edu;broad.mit.edu	37	1	151397436	151397437	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	POGZ-93	NM_015100	exon8	c.1179_1180del	p.393_394del	CACACATGTGACC	.	259	23	295	0	.	0	0	0	0	0
TNR	7143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175293508	175293508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TNR-324	NM_003285	exon22	c.A3941T	p.E1314V	CTGGACTCCCCGT	.	257	67	294	0	.	0	0	0	0	0
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186092320	186092320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	HMCN1-113	NM_031935	exon81	c.C12467T	p.S4156L	CAGGATCAAGCAG	.	103	32	132	0	.	0	0	0	0	0
NFASC	23114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	204923329	204923329	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	NFASC-139	NM_001005388	exon6	c.C229T	p.R77X	TGGACACGAAACA	.	120	12	144	0	.	0	0	0	0	0
CR2	1380	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207643213	207643213	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	CR2-232	NM_001006658	exon6	c.A991T	p.K331X	AGTCAGAAGACTG	.	156	22	163	2	.	0	0	0	0	0
TACC2	10579	broad.mit.edu;bcgsc.ca	37	10	123842918	123842918	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TACC2-296	NM_206862	exon4	c.A903T	p.T301T	TTTAACAGATGAC	.	184	11	135	1	.	0	0	0	0	0
TTC40	54777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134736085	134736085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	.	NM_001200049	exon12	c.C1384T	p.R462W	TGTCCCGGTAGAG	.	155	46	124	0	.	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu	37	10	135015372	135015372	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	KNDC1-229	NM_152643	exon17	c.G3357T	p.A1119A	GCAGGCGGACGGG	.	69	5	23	0	.	0	0	0	0	0
OR52I2	143502	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	4608887	4608887	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	OR52I2-91	NM_001005170	exon1	c.A845C	p.Y282S	TGTACTATCTACC	.	222	50	179	0	.	0	0	0	0	0
NLRP10	338322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	7982583	7982583	+	Silent	SNP	G	G	A	rs138681119	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	NLRP10-209	NM_176821	exon2	c.C576T	p.T192T	AGTACCGGTGGCC	.	140	25	75	0	G|1.000;A|0.000	0	0	0	0	0
CAPRIN1	4076	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	34097794	34097795	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	AA	AA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	CAPRIN1-91	NM_203364	exon5	c.378_379del	p.126_127del	GAAAACAATAAAG	.	50	13	70	0	.	0	0	0	0	0
DGKZ	8525	broad.mit.edu;bcgsc.ca	37	11	46389253	46389253	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	DGKZ-676	NM_001105540	exon4	c.G889C	p.D297H	TCCGGGGACTTCT	.	143	8	118	2	.	0	0	0	0	0
CDC42BPG	55561	bcgsc.ca	37	11	64601933	64601933	+	Silent	SNP	T	T	C	rs7933683	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	CDC42BPG-528	NM_017525	exon19	c.A2292G	p.T764T	CACCTGTGTCAGC	.	67	4	42	0	T|0.722;C|0.278	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	8	8	0	0	G|0.005;C|0.995	0	0	0	0	0
FRMD8	83786	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65167232	65167232	+	Missense_Mutation	SNP	G	G	A	rs139960411	byfrequency;alternate_allele	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	FRMD8-227	NM_031904	exon8	c.G829A	p.D277N	GAGGTTGACAAGC	.	323	42	87	3	G|0.999;C|0.001	3	3	0	0	0
FRMD8	83786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65167323	65167323	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	FRMD8-227	NM_031904	exon8	c.G920C	p.R307T	ATAGCAGAGAGAA	.	247	40	54	0	.	0	0	0	0	0
TRPC6	7225	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	101375498	101375498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TRPC6-93	NM_004621	exon2	c.C202T	p.R68W	TCTGCCGCCGGTG	.	150	25	151	1	.	0	0	0	0	0
ESAM	90952	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124631990	124631990	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ESAM-90	NM_138961	exon1	c.A61G	p.S21G	GGGCACTCAGCCC	.	166	49	155	1	.	0	0	0	0	0
GLB1L2	89944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134240910	134240910	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	GLB1L2-25	NM_138342	exon13	c.G1224C	p.K408N	AATCAAGTCTGAA	.	97	18	91	0	.	0	0	0	0	0
SLC2A13	114134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	40441854	40441854	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SLC2A13-515	NM_052885	exon2	c.A715T	p.R239W	CAAACCTCCATCC	.	62	9	47	0	.	0	0	0	0	0
MCRS1	10445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49957272	49957272	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	MCRS1-289	NM_001012300	exon6	c.C654T	p.S218S	GGCCTTGCTCTGG	.	46	14	56	0	.	3	2	1	0	0
ALX1	8092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85677521	85677521	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ALX1-24	NM_006982	exon2	c.G398A	p.R133Q	AGAAACGGAGGCA	.	210	41	176	0	.	0	0	0	0	0
AACS	65985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	125561105	125561105	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	AACS-92	NM_023928	exon3	c.A306C	p.A102A	CTATGCAGAAAAC	.	158	36	135	0	.	0	0	0	0	0
NOC4L	79050	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	132633391	132633391	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	NOC4L-90	NM_024078	exon9	c.G852C	p.L284L	GCAGCTGGCGCAG	.	87	19	101	1	.	4	4	0	0	0
TPTE2	93492	bcgsc.ca	37	13	20006685	20006685	+	Missense_Mutation	SNP	G	G	T	rs192298083	alternate_allele	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TPTE2-92	NM_199254	exon17	c.C1150A	p.H384N	AGAGATGTTTCAC	.	153	7	228	0	G|0.999;A|0.001	0	0	0	0	0
ARL11	115761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	50204849	50204849	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ARL11-90	NM_138450	exon2	c.A266G	p.D89G	TGCTGGACAGCAC	.	98	11	144	0	.	0	0	0	0	0
ARL11	115761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	50204863	50204863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ARL11-90	NM_138450	exon2	c.G280T	p.A94S	GATGAAGCCCGCT	.	92	11	132	0	.	0	0	0	0	0
GZMB	3002	bcgsc.ca	37	14	25101618	25101618	+	Missense_Mutation	SNP	G	G	A	rs52812266	alternate_allele	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	GZMB-514	NM_004131	exon3	c.C251T	p.P84L	TGGGTCGGCTCCT	.	166	16	141	2	.	0	0	0	0	0
SLC24A4	123041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92920319	92920319	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SLC24A4-93	NM_153646	exon11	c.T956A	p.F319Y	CCAAGTTCACCTT	.	302	80	395	0	.	0	0	0	0	0
AHNAK2	113146	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105404743	105404743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	AHNAK2-47	NM_138420	exon7	c.G17045A	p.R5682Q	TCTGGTCGTGCCT	.	153	42	145	1	.	0	0	0	0	0
RYR3	6263	ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34030716	34030716	+	Silent	SNP	C	C	T	rs112521485		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	RYR3-520	NM_001243996	exon50	c.C7581T	p.Y2527Y	GAGCTACGGGCTA	.	57	25	110	1	C|0.995;T|0.005	0	0	0	0	0
SCG3	29106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	51981440	51981440	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SCG3-91	NM_013243	exon6	c.C565G	p.L189V	CATACACTGGAAG	.	86	8	159	0	.	0	0	0	0	0
NARG2	79664	bcgsc.ca	37	15	60734697	60734697	+	Silent	SNP	A	A	G	rs55905322		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	NARG2-227	NM_024611	exon12	c.T2343C	p.Y781Y	AACTCCATAACAA	.	316	12	393	4	.	2	2	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	8	8	0	0	T|0.007;C|0.993	0	0	0	0	0
C16orf45	89927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	15596190	15596190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	C16orf45-91	NM_001142469	exon1	c.C12A	p.D4E	GGGCGACCTCACA	.	185	22	127	0	.	0	0	0	0	0
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27503663	27503663	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	GTF3C1-94	NM_001520	exon19	c.A3147G	p.P1049P	ACCTAGTGGGGTG	.	137	24	94	0	.	0	0	0	0	0
CDIPT	10423	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	29870513	29870515	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	CDIPT-90	NM_006319	exon6	c.637_639del	p.213_213del	GCGTCACTTCTTC	.	149	34	108	0	.	0	0	0	0	0
ABCC11	85320	broad.mit.edu	37	16	48245093	48245093	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ABCC11-95	NM_033151	exon10	c.G1374A	p.E458E	AGGGCTCTCCTGG	.	25	3	35	0	.	0	0	0	0	0
N4BP1	9683	broad.mit.edu;bcgsc.ca	37	16	48595678	48595678	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	N4BP1-22	NM_153029	exon2	c.A876C	p.E292D	ATGCCTTTCTTCA	.	15	4	37	0	.	0	0	0	0	0
ELMO3	79767	broad.mit.edu	37	16	67234630	67234630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ELMO3-90	NM_024712	exon7	c.G743A	p.S248N	TGGAGAGTGTGAC	.	294	32	100	2	.	3	1	2	0	0
PKD1L2	114780	bcgsc.ca	37	16	81185478	81185478	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	PKD1L2-92	.	.	.	.	ACTTCCGGTCCAT	.	168	7	326	2	.	0	0	0	0	0
ACAP1	9744	hgsc.bcm.edu	37	17	7251272	7251273	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ACAP1-153	NM_014716	exon15	c.1375_1376del	p.459_459del	GTCCGGTCTCTGA	.	87	14	94	1	.	0	0	0	0	0
IGFBP4	3487	hgsc.bcm.edu	37	17	38600092	38600092	+	Silent	SNP	G	G	A	rs598892	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	IGFBP4-522	NM_001552	exon1	c.G105A	p.L35L	GAAGCTGGCGCGC	.	7	6	1	0	G|0.645;A|0.355	0	0	0	0	0
QRICH2	84074	bcgsc.ca	37	17	74288508	74288508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	QRICH2-94	NM_032134	exon4	c.A1802T	p.D601V	TGCTGATCTGCAC	.	288	13	297	3	.	0	0	0	0	0
FLJ45079	0	ucsc.edu;bcgsc.ca	37	17	75878204	75878204	+	RNA	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	.	.	.	.	.	GGATATGTGTCAG	.	266	83	289	2	.	0	0	0	0	0
ENGASE	64772	hgsc.bcm.edu	37	17	77071040	77071040	+	Missense_Mutation	SNP	C	C	A	rs56107536		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ENGASE-91	NM_001042573	exon1	c.C14A	p.A5E	CCGCGGCGGTGAC	.	7	5	0	0	C|0.836;A|0.164	0	0	0	0	0
THOC1	9984	broad.mit.edu;bcgsc.ca	37	18	268019	268021	+	Frame_Shift_Del	DEL	TCT	TCT	-	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	THOC1-91	NM_005131	wholegene			GAGACATCTTCTC	.	69	0	102	0	.	0	0	0	0	0
RNF165	494470	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	44013156	44013156	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	RNF165-90	NM_152470	exon2	c.C65T	p.A22V	CAGGTGCCCCCTT	.	126	28	78	1	.	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9045734	9045734	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	MUC16-566	NM_024690	exon5	c.C35897G	p.T11966S	AAGATAGTGGTTG	.	306	100	297	0	.	0	0	0	0	0
DNMT1	1786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10259655	10259655	+	Silent	SNP	G	G	A	rs200928585		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	DNMT1-660	NM_001130823	exon27	c.C2625T	p.D875D	CTTCCCGTCGTCC	.	170	36	112	0	G|0.999;A|0.000	0	0	0	0	0
OR7C1	26664	hgsc.bcm.edu	37	19	14910638	14910638	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	OR7C1-70	NM_198944	exon1	c.311delT	p.F104fs	GAAGTGAAAAAAA	.	483	11	131	1	.	0	0	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704002	29704002	+	Silent	SNP	T	T	C	rs11666764	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	UQCRFS1-226	NM_006003	exon1	c.A24G	p.S8S	CGGGCCTGAGCGG	.	7	6	0	0	T|0.072;C|0.928	0	0	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C	rs8100724	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	UQCRFS1-226	NM_006003	exon1	c.T16G	p.S6A	AGCGGGATGCTAC	.	8	8	0	0	A|0.065;C|0.935	0	0	0	0	0
ZNF420	147923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37619839	37619839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ZNF420-90	NM_144689	exon5	c.G1946A	p.G649E	AATGTGGGAAGGC	.	88	22	60	0	.	1	1	0	0	0
ADCK4	79934	hgsc.bcm.edu;broad.mit.edu	37	19	41220217	41220217	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ADCK4-319	NM_001142555	exon3	c.G188C	p.R63P	GCCTCCCGTGCCC	.	35	8	28	0	.	0	0	0	0	0
ERF	2077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42753866	42753866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ERF-658	NM_006494	exon4	c.C398T	p.P133L	ACTGGCGGGGCAC	.	103	23	96	0	.	4	2	2	0	0
ZNF226	7769	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	44680835	44680837	+	In_Frame_Del	DEL	TCA	TCA	-	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	TCA	TCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	.	NM_001032372	exon6	c.1420_1422del	p.474_474del	GAGAAGTCATACA	.	141	20	131	0	.	0	0	0	0	0
SYMPK	8189	broad.mit.edu	37	19	46321272	46321272	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SYMPK-91	NM_004819	exon23	c.A3026C	p.Y1009S	CGGGGGTACATGG	.	100	18	74	7	.	31	29	1	1	0
MIR512-2	574459	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	54172505	54172505	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	.	.	.	.	.	GGCGAGCACCGAA	.	205	35	169	0	.	0	0	0	0	0
LILRB2	10288	broad.mit.edu;bcgsc.ca	37	19	54783810	54783810	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	LILRB2-91	NM_005874	exon4	c.A191G	p.K64R	GATTTTTTCTCCC	.	209	6	212	0	.	0	0	0	0	0
FAM71E2	284418	broad.mit.edu	37	19	55869916	55869916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	.	NM_001145402	exon9	c.G2320A	p.E774K	TCATCTCGCCCCA	.	77	3	48	0	.	0	0	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ZNF787-69	NM_001002836	exon3	c.1101_1103del	p.367_368del	GCGGCCTCGTCGT	.	28	27	3	3	.	0	0	0	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	11	9	2	0	G|0.301;C|0.699	0	0	0	0	0
C2orf71	388939	broad.mit.edu;bcgsc.ca	37	2	29296512	29296512	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	C2orf71-91	NM_001029883	exon1	c.C616G	p.H206D	CCTGATGGATGAT	.	164	8	144	0	.	0	0	0	0	0
ARHGEF33	100271715	hgsc.bcm.edu	37	2	39187519	39187519	+	Silent	SNP	A	A	G	rs958412		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ARHGEF33-46	NM_001145451	exon14	c.A2073G	p.K691K	CTACAAACTGGAG	.	8	8	0	0	A|0.086;G|0.914	0	0	0	0	0
PEX13	5194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61275821	61275821	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	PEX13-91	NM_002618	exon4	c.C1128T	p.A376A	AGCTGCCTTTGAA	.	169	31	126	0	.	7	5	2	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	.	NM_023016	exon1	c.A126G	p.L42L	CGCCCTAGGCGGC	.	20	20	0	0	A|0.029;G|0.971	0	0	0	0	0
GLI2	2736	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	121747796	121747796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	GLI2-954	NM_005270	exon13	c.G4306A	p.A1436T	CAGGACGCAGGTG	.	312	66	256	1	.	4	4	0	0	0
NXPH2	11249	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	139429091	139429091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	NXPH2-72	NM_007226	exon2	c.C196T	p.P66S	GCTTGGGCACCGG	.	115	8	76	0	.	0	0	0	0	0
MAP2	4133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210557459	210557459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	MAP2-591	NM_002374	exon7	c.G565T	p.G189C	AAGCCTGGTGAAG	.	162	37	121	0	.	0	0	0	0	0
SP140	11262	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	231102964	231102964	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SP140-90	NM_007237	exon3	c.A274T	p.T92S	CCAGTGACAAGAG	.	252	29	174	1	.	0	0	0	0	0
ESPNL	339768	hgsc.bcm.edu	37	2	239009289	239009289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ESPNL-69	NM_194312	exon1	c.G229A	p.A77T	CATGACGCCGCTG	.	19	6	3	0	.	0	0	0	0	0
PANK2	80025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3869889	3869889	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	PANK2-115	NM_153638	exon1	c.C142G	p.L48V	GATAGCCTCTCAT	.	118	46	162	0	.	0	0	0	0	0
PAK7	57144	broad.mit.edu	37	20	9546653	9546653	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	PAK7-1434	NM_177990	exon5	c.G1369T	p.E457X	AGCCTTCCCCGAT	.	191	6	192	0	.	0	0	0	0	0
NINL	22981	bcgsc.ca	37	20	25439036	25439036	+	Missense_Mutation	SNP	G	G	A	rs41310175	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	NINL-94	NM_025176	exon22	c.C3826T	p.R1276C	CCAGGCGCCTCCT	.	115	6	101	1	G|0.973;A|0.027	9	9	0	0	0
RTFDC1	51507	hgsc.bcm.edu	37	20	55059239	55059239	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	.	NM_016407	exon5	c.C471T	p.C157C	AGTTTGCCACACG	.	76	4	103	0	.	0	0	0	0	0
KRTAP21-3	100288323	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	21	32090951	32090951	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	.	NM_001164435	exon1	c.T127G	p.Y43D	CAGAATATTTATT	.	249	42	233	0	.	0	0	0	0	0
TIAM1	7074	broad.mit.edu	37	21	32624321	32624321	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TIAM1-724	NM_003253	exon6	c.T1148G	p.V383G	TCGTACACCCCCT	.	84	17	66	11	.	0	0	0	0	0
GCAT	23464	broad.mit.edu	37	22	38205989	38205989	+	Missense_Mutation	SNP	T	T	C	rs2285178	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	GCAT-90	NM_001171690	exon2	c.T230C	p.L77S	TGCCCTTGCCCCA	.	95	5	145	1	T|0.722;C|0.278	0	0	0	0	0
C22orf26	55267	hgsc.bcm.edu	37	22	46449891	46449891	+	Missense_Mutation	SNP	G	G	A	rs12159707		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	C22orf26-90	NM_018280	exon1	c.C83T	p.P28L	GGGTTGGGGGGGG	.	5	4	3	0	A|0.248;C|0.000;G|0.752	0	0	0	0	0
IQSEC1	9922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	12977227	12977227	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	IQSEC1-91	NM_014869	exon3	c.C1331G	p.P444R	TCCAGGGGCCTGG	.	54	12	56	0	.	0	0	0	0	0
LSM3	27258	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14220380	14220380	+	Missense_Mutation	SNP	A	A	C	rs200658802		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	LSM3-91	NM_014463	exon1	c.A20C	p.Q7P	TAGACCAGGTAAG	.	138	42	152	9	A|0.999;C|0.001	0	0	0	0	0
LZTFL1	54585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45879475	45879475	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	LZTFL1-90	NM_020347	exon2	c.G72C	p.K24N	GCCTCTCTTTGAA	.	60	16	59	0	.	0	0	0	0	0
PTH1R	5745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46943321	46943321	+	Silent	SNP	C	C	A	rs151330461	byfrequency;alternate_allele	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	PTH1R-522	NM_001184744	exon12	c.C1182A	p.A394A	CAACGCCGGCCGG	.	201	52	236	0	C|1.000;T|0.000	0	0	0	0	0
SEMA5B	54437	hgsc.bcm.edu	37	3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	rs2276782	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SEMA5B-157	NM_001256347	exon18	c.T2681A	p.V894D	AGGAGGACCTCCA	.	4	4	0	0	T|0.412;A|0.588	0	0	0	0	0
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154884739	154884739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	MME-516	NM_007287	exon18	c.C1709A	p.S570Y	AGCAGTCCAACTC	.	103	30	111	0	.	0	0	0	0	0
AHSG	197	bcgsc.ca	37	3	186338564	186338564	+	Missense_Mutation	SNP	C	C	T	rs35457250	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	AHSG-90	NM_001622	exon7	c.C949T	p.R317C	GACCTGCGCCACA	.	168	6	172	2	C|0.993;T|0.007	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	62	10	19	0	C|0.960;G|0.040	6	3	3	0	0
CRIPAK	285464	bcgsc.ca	37	4	1388790	1388790	+	Missense_Mutation	SNP	T	T	C	rs79415192		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	CRIPAK-90	NM_175918	exon1	c.T491C	p.V164A	CCGACGTGGAGTG	.	42	15	26	1	C|1.000;|0.000	6	5	1	0	0
STIM2	57620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	26997088	26997088	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	STIM2-91	NM_001169118	exon4	c.A485G	p.N162S	ACAACAATGTCAA	.	67	16	95	0	.	3	3	0	0	0
DSPP	1834	bcgsc.ca	37	4	88536550	88536550	+	Silent	SNP	T	T	C	rs145589857		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	DSPP-90	NM_014208	exon5	c.T2736C	p.S912S	CAGCAGTGACAGC	.	564	17	560	5	.	0	0	0	0	0
FRG1	2483	bcgsc.ca	37	4	190874269	190874269	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	FRG1-90	NM_004477	exon4	c.A306T	p.L102F	CAAATTATCTGAT	.	337	13	463	6	.	0	0	0	0	0
SMN1	6606	broad.mit.edu	37	5	69372372	69372372	+	Missense_Mutation	SNP	G	G	C	rs121909192	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SMN1-22	NM_000344	exon8	c.G859C	p.G287R	AAAGAAGGAAGGT	.	70	5	93	2	G|0.996;C|0.004	34	34	0	0	0
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	101748695	101748695	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SLCO6A1-96	NM_173488	exon9	c.A1625C	p.K542T	ATTACCTTTTTTT	.	39	18	51	0	.	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	.	NM_175873	exon1	c.G371C	p.R124P	TGGTCCGGGTGCC	.	7	7	0	0	G|0.980;C|0.020	0	0	0	0	0
DOK3	79930	bcgsc.ca	37	5	176936590	176936590	+	Silent	SNP	T	T	C	rs2112181	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	DOK3-226	NM_024872	exon2	c.A120G	p.S40S	GACTGATGACAGG	.	101	5	94	0	T|0.892;C|0.108	0	0	0	0	0
BPHL	670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	3118992	3118992	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	BPHL-90	NM_004332	exon1	c.C18T	p.G6G	GCTGGGCGGCCGG	.	57	11	30	0	.	0	0	0	0	0
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65655687	65655687	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	EYS-660	NM_001142800	exon15	c.C2380T	p.R794X	CTCACCGATAGCT	.	91	24	90	0	.	0	0	0	0	0
SNX14	57231	broad.mit.edu	37	6	86227557	86227557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SNX14-226	NM_153816	exon23	c.A2185G	p.I729V	AATTAATGAAATT	.	54	3	80	0	.	3	3	0	0	0
C6orf58	352999	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	127899852	127899852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	C6orf58-90	NM_001010905	exon2	c.G323A	p.R108Q	CAACCCGAAGGAC	.	153	51	133	1	.	0	0	0	0	0
FGFR1OP	11116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167436000	167436000	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	FGFR1OP-683	NM_007045	exon8	c.C683G	p.S228C	TTGGATCTTTTCT	.	79	18	87	0	.	8	8	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5372406	5372406	+	Silent	SNP	G	G	T	rs13238738	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TNRC18-46	NM_001080495	exon19	c.C5994A	p.R1998R	CTCGCTGCGGCGC	.	9	7	0	0	G|0.411;T|0.589	0	0	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	23	16	0	0	G|0.456;C|0.544	0	0	0	0	0
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18705997	18705997	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	HDAC9-227	NM_178425	exon11	c.A1629G	p.G543G	ACTGGGACAAGTT	.	185	38	171	0	.	0	0	0	0	0
OR2F1	26211	bcgsc.ca	37	7	143657801	143657801	+	Silent	SNP	A	A	G	rs2072166	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	OR2F1-71	NM_012369	exon1	c.A738G	p.T246T	CCTCACAGTGGTT	.	143	5	225	2	A|0.568;G|0.432	0	0	0	0	0
PCM1	5108	ucsc.edu;bcgsc.ca	37	8	17817553	17817553	+	Missense_Mutation	SNP	G	G	T	rs17635381	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	PCM1-742	NM_006197	exon14	c.G2071T	p.A691S	ATCTCTGCCAGTG	.	108	25	136	0	G|0.834;N|0.000	1	1	0	0	0
ZFAT	57623	broad.mit.edu;bcgsc.ca	37	8	135615137	135615137	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ZFAT-90	NM_020863	exon6	c.C825A	p.Y275X	GTTGCAGTATTCA	.	311	13	198	0	.	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	29	10	1	0	G|0.246;A|0.754	0	0	0	0	0
BOP1	23246	hgsc.bcm.edu	37	8	145486621	145486623	+	In_Frame_Del	DEL	GTT	GTT	-	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	GTT	GTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	BOP1-90	NM_015201	exon14	c.1900_1902del	p.634_634del	GATGACGTTGTCA	.	167	30	148	0	.	0	0	0	0	0
TTC16	158248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130492920	130492920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TTC16-90	NM_144965	exon14	c.A1858G	p.T620A	GTCAGGACCACAG	.	67	23	62	0	.	0	0	0	0	0
TTC16	158248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	130493619	130493619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TTC16-90	NM_144965	exon14	c.G2557A	p.G853R	ACCTGGGGACCCA	.	215	19	185	0	.	0	0	0	0	0
WDR34	89891	hgsc.bcm.edu	37	9	131418828	131418828	+	Missense_Mutation	SNP	A	A	C	rs4837292		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	WDR34-92	NM_052844	exon1	c.T178G	p.W60G	TCTCCCAGCGGAT	.	6	6	0	0	A|0.006;C|0.994	0	0	0	0	0
SLC2A6	11182	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	136339193	136339193	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	SLC2A6-90	NM_017585	exon7	c.A945G	p.A315A	GATGGCTGCGTCG	.	112	7	102	0	.	0	0	0	0	0
TPRN	286262	hgsc.bcm.edu;bcgsc.ca	37	9	140086594	140086594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TPRN-90	NM_001128228	exon4	c.C2106A	p.D702E	GCGGAAGTCCGAG	.	55	4	81	0	.	9	9	0	0	0
AR	367	bcgsc.ca	37	X	66765161	66765161	+	Missense_Mutation	SNP	A	A	T	rs200185441		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	AR-661	NM_000044	exon1	c.A173T	p.Q58L	TGCTGCAGCAGCA	.	21	4	35	0	.	0	0	0	0	0
PASD1	139135	bcgsc.ca	37	X	150840185	150840185	+	Silent	SNP	T	T	C	rs6627174	byfrequency	TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	PASD1-133	NM_173493	exon13	c.T1371C	p.G457G	CTGTGGTTTATCT	.	87	6	107	0	0|0.003;C|0.270	0	0	0	0	0
ARPC2	10109	broad.mit.edu	37	2	219103504	219103505	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	ARPC2-91	NM_005731	exon5	c.386_387insC	p.F129fs	AATACTTCCAATT	.	349	8	263	0	.	0	0	0	0	0
TIMP3	7078	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	33255323	33255324	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	TIMP3-226	NM_000362	exon5	c.595_596insC	p.A199fs	GGATGGGCCCCCC	.	76	20	74	0	.	0	0	0	0	0
MAP3K4	4216	hgsc.bcm.edu	37	6	161413044	161413045	+	In_Frame_Ins	INS	-	-	CCG	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	MAP3K4-548	NM_006724	exon1	c.81_82insCCG	p.P27delinsPP	GCCGCCACCGCCG	.	16	11	5	0	.	0	0	0	0	0
SPATA31C1	441452	hgsc.bcm.edu	37	9	90534192	90534193	+	In_Frame_Ins	INS	-	-	TCTTGTCTCCCAGCGTCA	novel		TCGA-OR-A5LD-01A-11D-A29I-10	TCGA-OR-A5LD-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0d84ce93-4c12-49da-87b3-c36d44672d59	afc22b50-442d-4fde-93ce-df0c281205c9	.	.	NM_001145124	exon2	c.212_213insTCTTGTCTCCCAGCGTCA	p.H71delinsHLVSQRH	AGCGTCATCTTGT	.	357	0	400	0	.	0	0	0	0	0