Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CYP4B1	1580	bcgsc.ca	37	1	47279175	47279175	+	Missense_Mutation	SNP	C	C	T	rs4646487	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	CYP4B1-92	NM_000779	exon5	c.C517T	p.R173W	AAAGCTCGGGAGG	.	70	4	80	0	C|0.839;T|0.161	0	0	0	0	0
IL12RB2	3595	bcgsc.ca	37	1	67852335	67852335	+	Silent	SNP	G	G	A	rs4297265	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	IL12RB2-92	NM_001559	exon14	c.G1929A	p.T643T	CTCAACGCATTAC	.	174	6	168	1	A|0.433;G|0.567	0	0	0	0	0
CTBS	1486	broad.mit.edu	37	1	85039999	85040007	+	In_Frame_Del	DEL	GCAGCGCCA	GCAGCGCCA	-	rs142534762	bycluster;by1000genomes;alternate_allele	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	CTBS-90	NM_004388	exon1	c.92_100del	p.31_34del	CGAGCCGCAGCGC	.	56	16	18	0	.	0	0	0	0	0
SPRR3	6707	broad.mit.edu	37	1	152975659	152975682	+	In_Frame_Del	DEL	GAGCCAGGCTGTACCAAGGTCCCT	GAGCCAGGCTGTACCAAGGTCCCT	-	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	SPRR3-45	NM_001097589	exon2	c.163_186del	p.55_62del	ATTCCAGAGCCAG	.	91	33	123	0	.	0	0	0	0	0
HMCN1	83872	ucsc.edu;bcgsc.ca	37	1	186031041	186031041	+	Silent	SNP	C	C	T	rs7522627	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	HMCN1-113	NM_031935	exon47	c.C7371T	p.C2457C	TACTTGCGTTGTA	.	36	4	53	0	C|0.372;T|0.628	0	0	0	0	0
C1orf106	55765	hgsc.bcm.edu	37	1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	rs296520	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	C1orf106-93	NM_018265	exon9	c.C1654T	p.R552C	GAGCTGCGCCGCG	.	9	9	0	0	C|0.242;T|0.758	0	0	0	0	0
PROSER2	254427	hgsc.bcm.edu	37	10	11912332	11912332	+	Missense_Mutation	SNP	C	C	T	rs12253554		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	.	NM_153256	exon4	c.C1235T	p.A412V	AGTTCGCGGGCCG	.	6	5	0	0	C|0.935;T|0.065	0	0	0	0	0
GPRIN2	9721	hgsc.bcm.edu	37	10	47000217	47000217	+	Missense_Mutation	SNP	G	G	A	rs72780221	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	GPRIN2-90	NM_014696	exon3	c.G1337A	p.R446H	TGCGGCGCCCCAG	.	19	9	2	0	G|0.901;A|0.099	0	0	0	0	0
AGAP11	119385	broad.mit.edu;bcgsc.ca	37	10	88768599	88768599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	.	NM_133447	exon12	c.C590T	p.S197F	CCAGCTCTAAAAG	.	586	24	670	0	.	10	10	0	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	7	7	0	0	A|0.009;G|0.991	2	0	2	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135000148	135000148	+	Silent	SNP	T	T	C	rs3810965	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	KNDC1-229	NM_152643	exon6	c.T1296C	p.A432A	AGGAGCTAGGCAG	.	4	4	1	0	T|0.607;C|0.393	1	0	1	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135000159	135000159	+	Missense_Mutation	SNP	A	A	G	rs3810964	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	KNDC1-229	NM_152643	exon6	c.A1307G	p.E436G	AGCTGGAAAGTGC	.	4	4	1	0	A|0.608;G|0.392	0	0	0	0	0
MUC6	4588	broad.mit.edu	37	11	1027716	1027716	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	MUC6-23	NM_005961	exon16	c.C1950A	p.L650L	GCCCCAGAGCAGG	.	78	3	81	0	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253976	1253976	+	Missense_Mutation	SNP	A	A	G	rs76956995		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	.	NM_002458	exon17	c.A2041G	p.S681G	CAGCTCAGCGACT	.	92	6	49	0	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	90	7	45	0	.	0	0	0	0	0
OR9G4	283189	bcgsc.ca	37	11	56510623	56510623	+	Missense_Mutation	SNP	A	A	G	rs513873	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	OR9G4-71	NM_001005284	exon1	c.T665C	p.V222A	GAGAGTACTGTGA	.	118	7	118	1	A|0.748;G|0.252	0	0	0	0	0
USP35	57558	broad.mit.edu	37	11	77920714	77920714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	USP35-637	NM_020798	exon10	c.C1813T	p.R605C	CCTGAGCGCTGTC	.	81	4	97	0	.	0	0	0	0	0
MMP8	4317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102586132	102586132	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	MMP8-229	NM_002424	exon7	c.C939T	p.V313V	CATTTCGACTCTT	.	68	8	68	0	.	0	0	0	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	TUBA1C-90	NM_032704	exon4	c.G492A	p.K164K	CAAGAAGTCCAAG	.	259	13	192	18	G|0.998;A|0.002	324	226	98	0	0
UBE3B	89910	broad.mit.edu	37	12	109947450	109947450	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	UBE3B-660	NM_130466	exon16	c.G1672T	p.E558X	AAACTGGAAGAGC	.	88	3	70	0	.	2	2	0	0	0
PPTC7	160760	broad.mit.edu	37	12	111020740	111020742	+	In_Frame_Del	DEL	CGC	CGC	-	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	PPTC7-90	NM_139283	exon1	c.95_97del	p.32_33del	CGTAGTCGCCGCC	.	32	10	11	0	.	0	0	0	0	0
FAM109A	144717	hgsc.bcm.edu	37	12	111800836	111800836	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	FAM109A-90	NM_001177996	exon4	c.C435T	p.G145G	ACCCCCGCCACGT	.	19	12	0	0	.	0	0	0	0	0
PITPNM2	57605	bcgsc.ca	37	12	123471094	123471094	+	Silent	SNP	G	G	A	rs12811109	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	PITPNM2-228	NM_020845	exon24	c.C3615T	p.H1205H	GGCCGCGTGCACG	.	206	8	137	0	G|0.860;A|0.140	4	4	0	0	0
NPAP1	23742	hgsc.bcm.edu	37	15	24921115	24921115	+	Missense_Mutation	SNP	C	C	A	rs35022251	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	.	NM_018958	exon1	c.C101A	p.P34Q	CCTCCCCGCCCGG	.	16	6	0	0	C|0.970;A|0.030	0	0	0	0	0
SOLH	6650	hgsc.bcm.edu	37	16	597505	597505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	SOLH-523	NM_005632	exon4	c.G667A	p.E223K	GCTGCCGAACCAG	.	21	11	0	0	.	0	0	0	0	0
TELO2	9894	ucsc.edu;bcgsc.ca	37	16	1547477	1547477	+	Silent	SNP	T	T	C	rs2745108	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	TELO2-90	NM_016111	exon5	c.T798C	p.A266A	GGAGGCTGTGCTG	.	80	28	21	0	T|0.754;C|0.246	9	5	4	0	0
FUS	2521	broad.mit.edu	37	16	31196405	31196405	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	FUS-1719	NM_004960	exon6	c.C669T	p.G223G	TGGTGGCGGCGGC	.	67	5	15	0	.	10	10	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	6	6	0	0	G|0.001;A|0.999	1	0	1	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	12	0	0	0	.	0	0	0	0	0
ALOX12	239	broad.mit.edu	37	17	6903656	6903656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	ALOX12-226	NM_000697	exon7	c.A809G	p.N270S	CCCAGAATGGTTC	.	89	5	103	0	.	0	0	0	0	0
DVL2	1856	ucsc.edu;bcgsc.ca	37	17	7129840	7129840	+	Silent	SNP	T	T	C	rs35594616	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	DVL2-659	NM_004422	exon14	c.A1662G	p.Q554Q	AGGGTATTGGTAG	.	30	4	41	0	T|0.450;C|0.550	8	8	0	0	0
NF1	4763	hgsc.bcm.edu	37	17	29676201	29676202	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	CT	CT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	NF1-3353	NM_001042492	exon49	c.7253_7254del	p.2418_2418del	TACTAACTCTGGT	.	43	24	76	2	.	0	0	0	0	0
EPX	8288	broad.mit.edu	37	17	56274588	56274588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	EPX-92	NM_000502	exon7	c.C1090T	p.R364C	ACCAACCGCTCGG	.	40	3	49	1	.	0	0	0	0	0
RAX	30062	hgsc.bcm.edu	37	18	56936395	56936395	+	Silent	SNP	T	T	C	rs7226481		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	RAX-90	NM_013435	exon3	c.A882G	p.Q294Q	GAGAGGTTGCAGG	.	8	7	1	0	T|0.767;C|0.233	0	0	0	0	0
GRIN3B	116444	hgsc.bcm.edu	37	19	1003292	1003292	+	Missense_Mutation	SNP	G	G	A	rs149087926		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	GRIN3B-90	NM_138690	exon2	c.G590A	p.R197Q	CTGGCCGGCCCCC	.	22	7	0	0	G|0.997;A|0.003	0	0	0	0	0
ZNRF4	148066	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	5456615	5456615	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	ZNRF4-135	NM_181710	exon1	c.C1113T	p.D371D	CAGGGACGAGGAC	.	64	4	53	0	.	0	0	0	0	0
MUC16	94025	bcgsc.ca	37	19	9068397	9068397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	MUC16-566	NM_024690	exon3	c.C19049A	p.S6350Y	GCAGAGGATCTAG	.	54	4	52	0	.	0	0	0	0	0
MUC16	94025	bcgsc.ca	37	19	9075737	9075737	+	Silent	SNP	T	T	C	rs2547071	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	MUC16-566	NM_024690	exon3	c.A11709G	p.V3903V	CCTTAATACACTG	.	74	4	101	0	T|0.561;C|0.439	0	0	0	0	0
RGS9BP	388531	hgsc.bcm.edu	37	19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	rs259290	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	RGS9BP-90	NM_207391	exon1	c.G286T	p.A96S	CGACGCGCGCTGG	.	4	4	0	0	G|0.540;T|0.460	0	0	0	0	0
GEMIN7	79760	broad.mit.edu	37	19	45593754	45593754	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	GEMIN7-91	NM_024707	exon3	c.A382C	p.T128P	TCATATACCTTCA	.	122	29	124	21	.	10	10	0	0	0
RUVBL2	10856	bcgsc.ca	37	19	49513273	49513273	+	Silent	SNP	C	C	T	rs1062708	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	RUVBL2-227	NM_006666	exon8	c.C613T	p.L205L	TCCAAGCTGGGCC	.	144	7	145	0	C|0.579;T|0.421	35	35	0	0	0
FEZ2	9637	hgsc.bcm.edu	37	2	36825137	36825137	+	Missense_Mutation	SNP	G	G	A	rs1544655		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	FEZ2-23	NM_001042548	exon1	c.C149T	p.P50L	CAGGCCGGGGCCG	.	6	6	0	0	T|0.817;C|0.180	2	0	2	0	0
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61463189	61463189	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	USP34-579	NM_014709	exon56	c.T6938G	p.L2313R	GTCTCTAGGACAA	.	58	23	37	0	.	2	2	0	0	0
PRR21	643905	hgsc.bcm.edu	37	2	240982362	240982362	+	Missense_Mutation	SNP	G	G	A	rs151246209	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	PRR21-70	NM_001080835	exon1	c.C38T	p.P13L	ATGAAGGGCCGTG	.	107	9	113	0	G|0.991;A|0.009	0	0	0	0	0
PRR21	643905	hgsc.bcm.edu;ucsc.edu	37	2	240982379	240982379	+	Silent	SNP	T	T	C	rs138056768	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	PRR21-70	NM_001080835	exon1	c.A21G	p.T7T	AAGAGCTGTGGAT	.	92	12	90	0	T|0.989;C|0.011	0	0	0	0	0
PRR21	643905	hgsc.bcm.edu	37	2	240982389	240982389	+	Missense_Mutation	SNP	C	C	G	rs143417758	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	PRR21-70	NM_001080835	exon1	c.G11C	p.C4S	GATGAACAGGCAT	.	86	5	88	0	C|0.998;G|0.002	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29623219	29623219	+	RNA	SNP	A	A	G	rs34726194		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	FRG1B-22	.	.	.	.	TCGACAATGGTCT	.	672	18	549	8	.	29	29	0	0	0
BCL2L1	598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30309831	30309831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	BCL2L1-1084	NM_138578	exon2	c.C191T	p.A64V	TTCACCGCGGGGC	.	95	38	70	0	.	3	1	2	0	0
BAGE2	85319	bcgsc.ca	37	21	11058322	11058322	+	Missense_Mutation	SNP	C	C	T	rs2951027	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	.	NM_182482	exon3	c.G118A	p.D40N	GCACATCGCTGAA	.	235	14	250	4	C|0.750;T|0.250	0	0	0	0	0
TMPRSS2	7113	bcgsc.ca	37	21	42845383	42845383	+	Silent	SNP	A	A	G	rs17854725	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	TMPRSS2-5208	NM_001135099	exon9	c.T879C	p.I293I	GCCCACAATCCTG	.	245	8	107	0	A|0.555;G|0.445	0	0	0	0	0
KRTAP10-1	386677	bcgsc.ca	37	21	45959559	45959559	+	Missense_Mutation	SNP	C	C	A	rs62218859	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	KRTAP10-1-91	NM_198691	exon1	c.G475T	p.D159Y	AGGAATCCTCAGA	.	546	16	456	5	C|0.434;A|0.566	0	0	0	0	0
KIAA1656	0	bcgsc.ca	37	22	30767637	30767637	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	.	.	.	.	.	TGCCATAGAAACA	.	46	4	39	0	.	0	0	0	0	0
SH3BP1	23616	bcgsc.ca	37	22	38046718	38046718	+	Silent	SNP	A	A	G	rs762987	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	SH3BP1-90	NM_018957	exon16	c.A1584G	p.A528A	TTCAGCAGCTACC	.	122	5	98	0	A|0.859;G|0.141	0	0	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	12	12	0	0	A|0.354;G|0.646	0	0	0	0	0
CDPF1	150383	ucsc.edu;bcgsc.ca	37	22	46644168	46644168	+	Missense_Mutation	SNP	A	A	G	rs9627281	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	.	NM_207327	exon2	c.T14C	p.V5A	CACTCTACATGGG	.	38	4	49	0	A|0.682;G|0.318	0	0	0	0	0
NUP210	23225	bcgsc.ca	37	3	13421150	13421150	+	Missense_Mutation	SNP	C	C	T	rs7628051	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	NUP210-256	NM_024923	exon7	c.G889A	p.A297T	GCCGGGCTGGGTC	.	134	7	200	2	C|0.416;T|0.584	0	0	0	0	0
CCDC71	64925	ucsc.edu;bcgsc.ca	37	3	49200692	49200692	+	Missense_Mutation	SNP	T	T	A	rs4955419	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	CCDC71-91	NM_022903	exon2	c.A950T	p.Q317L	TTGACCTGTGCTG	.	31	4	71	0	T|0.394;A|0.606	15	15	0	0	0
ROBO1	6091	hgsc.bcm.edu;bcgsc.ca	37	3	78710311	78710311	+	Missense_Mutation	SNP	G	G	T	rs201271022	alternate_allele	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	ROBO1-67	NM_002941	exon16	c.C2189A	p.T730K	GCTGGCGTCCTCA	.	57	4	45	0	.	0	0	0	0	0
OPA1	4976	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	193380667	193380667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	OPA1-68	NM_130837	exon26	c.G2577T	p.E859D	TGAGGAGCACCCA	.	162	82	163	1	.	4	0	4	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	100	8	19	0	C|1.000;|0.000	16	10	6	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	OTOP1-92	NM_177998	exon1	c.310_318del	p.104_106del	CAGCATCCACAGC	.	56	11	5	0	.	0	0	0	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	rs10008444		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	ZAR1-90	NM_175619	exon1	c.G126C	p.Q42H	GCAGCAGCGCGGC	.	11	11	1	0	G|0.025;C|0.975	0	0	0	0	0
AMBN	258	hgsc.bcm.edu	37	4	71462749	71462749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	AMBN-94	NM_016519	exon3	c.G118T	p.A40S	GGTATGGCTAGTT	.	72	4	32	0	.	0	0	0	0	0
FAM170A	340069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	118970068	118970068	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	FAM170A-91	NM_182761	exon3	c.G625A	p.V209I	CCCACCGTTGAGG	.	115	44	92	0	.	0	0	0	0	0
PCDHB10	56126	hgsc.bcm.edu	37	5	140573844	140573844	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	PCDHB10-92	NM_018930	exon1	c.C1719T	p.T573T	CTGCACCGAGCTG	.	81	27	2	0	.	11	10	1	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086211	5086211	+	Silent	SNP	G	G	C	rs584962		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	PPP1R3G-136	NM_001145115	exon1	c.G492C	p.L164L	GCGCCTGCGAAGC	.	6	6	0	0	G|0.000;C|1.000	0	0	0	0	0
BTN2A3P	54718	bcgsc.ca	37	6	26426487	26426487	+	RNA	SNP	G	G	A	rs10946829	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	.	.	.	.	.	GAGCCCGTCATTG	.	62	4	92	0	G|0.837;A|0.163	0	0	0	0	0
AARS2	57505	bcgsc.ca	37	6	44268371	44268371	+	Silent	SNP	T	T	C	rs325008	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	AARS2-91	NM_020745	exon22	c.A2871G	p.S957S	CACTCGTGAGCCC	.	76	4	83	1	T|0.130;C|0.870	2	2	0	0	0
FAM26F	441168	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	6	116783563	116783563	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	FAM26F-68	NM_001010919	exon2	c.A471A	p.G157G	CAACCAGGCCAAG	.	24	15	14	0	.	1	1	0	0	0
MAP7	9053	hgsc.bcm.edu	37	6	136682172	136682172	+	Missense_Mutation	SNP	G	G	A	rs2076190	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	MAP7-90	NM_001198609	exon12	c.C1762T	p.R588W	CCTCCCGCTCGCG	.	8	8	0	0	G|0.243;A|0.757	0	0	0	0	0
SYNE1	23345	ucsc.edu	37	6	152469513	152469513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	SYNE1-607	NM_182961	exon137	c.C24643T	p.L8215F	CTGGGAGCTAGAA	.	37	4	43	0	.	0	0	0	0	0
GET4	51608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	930643	930643	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	GET4-90	NM_015949	exon5	c.A545G	p.Y182C	TGGAGTATTCCAC	.	254	71	221	0	.	116	67	49	0	0
AP5Z1	9907	broad.mit.edu	37	7	4827402	4827402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	.	NM_014855	exon11	c.G1449T	p.Q483H	CCTGCAGCTCAGG	.	87	8	13	0	.	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5352665	5352665	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	TNRC18-46	NM_001080495	exon27	c.A7857C	p.S2619S	GGAGGATGAGGAG	.	12	7	7	0	.	7	0	5	2	0
TNRC18	84629	hgsc.bcm.edu	37	7	5372406	5372406	+	Silent	SNP	G	G	T	rs13238738	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	TNRC18-46	NM_001080495	exon19	c.C5994A	p.R1998R	CTCGCTGCGGCGC	.	6	6	0	0	G|0.411;T|0.589	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	GGCGAC	-	rs11277659	alternate_allele	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	GGCGAC	GGCGAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	PODXL-136	NM_001018111	exon1	c.84_89del	p.28_30del	TGGGAGGGCGACG	.	28	12	0	0	.	0	0	0	0	0
CLDN23	137075	hgsc.bcm.edu	37	8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	rs12548737	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	.	NM_194284	exon1	c.G628A	p.V210M	ATCCAAGTGGAGT	.	11	4	0	0	G|0.907;A|0.093	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	12	12	0	0	.	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	4	4	0	0	A|0.118;G|0.882	1	0	1	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	12	12	0	0	A|0.738;G|0.262	4	0	4	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	rs11136334	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	PLEC-141	NM_201380	exon27	c.G4157A	p.R1386Q	TCCTGCCGCAGCT	.	14	14	0	0	C|0.707;T|0.293	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	8	8	0	0	G|0.246;A|0.754	1	0	1	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	11	11	0	0	G|0.992;C|0.006	2	0	2	0	0
SURF6	6838	hgsc.bcm.edu	37	9	136198859	136198859	+	Missense_Mutation	SNP	G	G	A	rs1800867	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	SURF6-91	NM_006753	exon5	c.C932T	p.T311M	CCGGCCGTGCGCT	.	27	16	2	0	G|0.988;A|0.012	10	0	10	0	0
TLR7	51284	bcgsc.ca	37	X	12903659	12903659	+	Missense_Mutation	SNP	A	A	T	rs179008	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	TLR7-564	NM_016562	exon3	c.A32T	p.Q11L	AGAGACAAATTCT	.	116	6	126	0	0|0.021;A|0.822;T|0.157	0	0	0	0	0
MAGT1	84061	hgsc.bcm.edu	37	X	77111010	77111010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	MAGT1-63	NM_032121	exon6	c.C846A	p.H282Q	TCCCGTGTGGGGA	.	72	4	94	0	.	0	0	0	0	0
PLXNA3	55558	bcgsc.ca	37	X	153694334	153694334	+	Missense_Mutation	SNP	C	C	G	rs5945430	byfrequency	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	PLXNA3-132	NM_017514	exon14	c.C2589G	p.D863E	GGGTGACAACCTG	.	268	7	321	2	C|0.625;G|0.375	2	2	0	0	0
TMEM2	23670	broad.mit.edu	37	9	74300311	74300312	+	Splice_Site	INS	-	-	AA	rs36080695	alternate_allele	TCGA-OR-A5LA-01A-11D-A29I-10	TCGA-OR-A5LA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	88fcb98e-87f0-400d-a518-d71acd4d4f15	dbf1a7bc-94a6-4ca2-af78-a3649deac3ed	.	TMEM2-92	NM_001135820	exon24	c.3767-2->TT	.	ACTCCCTAAAAAA	.	7	2	7	0	A|1.000;|0.000	0	0	0	0	0