Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
HES3	390992	hgsc.bcm.edu	37	1	6305292	6305292	+	Missense_Mutation	SNP	C	C	A	rs61760836		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	HES3-514	NM_001024598	exon4	c.C286A	p.P96T	CTGGTGCCCGAGA	.	6	6	0	0	C|0.430;A|0.570	0	0	0	0	0
CNR2	1269	bcgsc.ca	37	1	24201357	24201357	+	Silent	SNP	A	A	G	rs4649124	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	CNR2-228	NM_001841	exon2	c.T751C	p.L251L	CAGCCAACACTAG	.	203	7	197	4	A|0.358;G|0.642	0	0	0	0	0
SFN	2810	broad.mit.edu	37	1	27189835	27189835	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SFN-658	NM_006142	exon1	c.C132G	p.L44L	CCTGCTCTCAGTA	.	263	7	265	0	.	0	0	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	7	7	0	0	G|0.061;T|0.939	0	0	0	0	0
PRPF38A	84950	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	52878204	52878204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	PRPF38A-90	NM_032864	exon5	c.G517A	p.E173K	TTAGAGGAAGCTG	.	98	7	115	0	.	50	47	3	0	0
CTBS	1486	broad.mit.edu	37	1	85039999	85040007	+	In_Frame_Del	DEL	GCAGCGCCA	GCAGCGCCA	-	rs142534762	bycluster;by1000genomes;alternate_allele	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	CTBS-90	NM_004388	exon1	c.92_100del	p.31_34del	CGAGCCGCAGCGC	.	65	11	13	0	.	0	0	0	0	0
RSBN1	54665	hgsc.bcm.edu	37	1	114354654	114354654	+	Silent	SNP	T	T	C	rs3195954	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	RSBN1-91	NM_018364	exon1	c.A381G	p.P127P	ATTCGTTGGCGGC	.	19	7	4	0	T|0.861;C|0.139	0	0	0	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120611964	120611964	+	Missense_Mutation	SNP	G	G	C	rs11810554	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	NOTCH2-1441	NM_024408	exon1	c.C57G	p.C19W	GGCCGCGCAGCAC	.	7	6	0	0	G|0.680;C|0.320	0	0	0	0	0
SPRR3	6707	ucsc.edu	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SPRR3-45	NM_001097589	exon2	c.C219T	p.G73G	GCCAGGCTGTACC	.	172	41	171	0	A|0.000;C|0.697;T|0.303	0	0	0	0	0
LOR	4014	hgsc.bcm.edu	37	1	153233701	153233701	+	Silent	SNP	A	A	C	rs1143390	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	LOR-90	NM_000427	exon2	c.A276C	p.G92G	CTCCGGAGGCGGC	.	7	6	0	0	A|0.594;C|0.406	0	0	0	0	0
CENPF	1063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	214816610	214816610	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	CENPF-567	NM_016343	exon12	c.C4929G	p.L1643L	ACGACTCCAGCTA	.	140	71	145	0	.	1	0	1	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	12	9	0	0	C|0.643;T|0.357	1	1	0	0	0
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	237811822	237811822	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	RYR2-158	NM_001035	exon49	c.7421delG	p.R2474fs	TTGACAGGGTCTA	.	213	94	217	0	.	0	0	0	0	0
ABI1	10006	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	27040664	27040664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	ABI1-1082	NM_005470	exon11	c.C1214T	p.P405L	AACATGGGAATGT	.	105	46	110	1	.	12	11	1	0	0
SYNPO2L	79933	broad.mit.edu	37	10	75407622	75407622	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SYNPO2L-91	NM_001114133	exon4	c.G1788T	p.A596A	GGCAGGCGCCTCT	.	55	5	28	0	.	0	0	0	0	0
ARMS2	387715	bcgsc.ca	37	10	124214448	124214448	+	Missense_Mutation	SNP	G	G	T	rs10490924	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	ARMS2-1	NM_001099667	exon1	c.G205T	p.A69S	CCAGCTGCTAAAA	.	157	6	137	3	G|0.712;T|0.288	0	0	0	0	0
CST6	1474	hgsc.bcm.edu	37	11	65779590	65779590	+	Silent	SNP	C	C	T	rs1131544		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	CST6-523	NM_001323	exon1	c.C75T	p.D25D	ACGCGACGCCCGG	.	8	7	0	0	C|0.921;T|0.079	1	0	1	0	0
TMEM151A	256472	hgsc.bcm.edu	37	11	66062454	66062454	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	TMEM151A-90	NM_153266	exon2	c.A737G	p.N246S	GCGCCAACGAGGG	.	49	23	3	0	.	8	4	4	0	0
SORL1	6653	ucsc.edu;bcgsc.ca	37	11	121429444	121429444	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SORL1-228	NM_003105	exon20	c.G2808A	p.T936T	CTGGACGGATGCC	.	294	131	360	2	.	0	0	0	0	0
ETV6	2120	bcgsc.ca	37	12	11992168	11992168	+	Silent	SNP	G	G	A	rs11611479	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	ETV6-1674	NM_001987	exon3	c.G258A	p.T86T	CAACACGTTTGAA	.	265	8	264	1	G|0.850;A|0.150	4	4	0	0	0
C2CD5	9847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	22635541	22635541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	.	NM_014802	exon14	c.G1687A	p.G563R	TTAGTCCAAACAA	.	146	52	132	0	.	2	1	1	0	0
KANSL2	54934	broad.mit.edu	37	12	49054319	49054319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	.	NM_017822	exon8	c.A1057G	p.S353G	AGAGGCTTACAGG	.	169	5	138	0	.	40	40	0	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	TUBA1C-90	NM_032704	exon4	c.G492A	p.K164K	CAAGAAGTCCAAG	.	294	11	265	17	G|0.998;A|0.002	642	442	200	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	AMDHD1-90	NM_152435	exon1	c.C49T	p.L17L	GTGGTGCTGGTGT	.	13	6	0	0	C|0.752;T|0.248	1	1	0	0	0
RNFT2	84900	hgsc.bcm.edu	37	12	117187907	117187907	+	Silent	SNP	T	T	C	rs111256849	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	.	NM_001109903	exon4	c.T345C	p.H115H	CCACCATTTCCAC	.	9	4	0	0	T|0.767;C|0.233	0	0	0	0	0
KSR2	283455	bcgsc.ca	37	12	117993064	117993064	+	Silent	SNP	C	C	T	rs7955803	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	KSR2-1449	NM_173598	exon9	c.G1341A	p.P447P	GTCACACGGAACG	.	278	10	266	3	C|0.758;T|0.242	0	0	0	0	0
RIMBP2	23504	hgsc.bcm.edu	37	12	130921471	130921471	+	Silent	SNP	T	T	C	rs2292663	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	RIMBP2-142	NM_015347	exon10	c.A1971G	p.P657P	TGGCTGTGGCAGG	.	34	32	0	0	T|0.868;C|0.132	3	0	3	0	0
EFHA1	221154	hgsc.bcm.edu	37	13	22178258	22178258	+	Silent	SNP	C	C	T	rs9509812	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	EFHA1-90	NM_152726	exon1	c.G30A	p.R10R	CGCCACCCGCGCG	.	15	15	0	0	C|0.873;T|0.127	11	0	11	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	49	4	24	0	.	19	19	0	0	0
LRRC16B	90668	broad.mit.edu	37	14	24527267	24527267	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	LRRC16B-139	NM_138360	exon16	c.C1316A	p.A439D	TGGAGGCCCTCAG	.	129	5	98	1	.	0	0	0	0	0
HHIPL1	84439	hgsc.bcm.edu	37	14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	rs7158073	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	HHIPL1-70	NM_001127258	exon9	c.T2075C	p.V692A	TGTTCGTGGGCGG	.	7	7	0	0	T|0.478;C|0.522	2	0	2	0	0
PHGR1	644844	hgsc.bcm.edu	37	15	40648372	40648372	+	Silent	SNP	T	T	C	rs12900982	byfrequency;by1000genomes	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	.	NM_001145643	exon3	c.T117C	p.G39G	CCATGGTCCAGGG	.	18	4	7	0	T|0.839;C|0.161	0	0	0	0	0
WDR72	256764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	53998158	53998158	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	WDR72-92	NM_182758	exon10	c.T1068A	p.D356E	AGGAACATCAGGG	.	71	31	66	0	.	0	0	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	rs2919358	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	.	NM_001101362	exon1	c.C242T	p.A81V	TGCAGGCCGTGGA	.	8	4	0	0	C|0.452;T|0.548	0	0	0	0	0
PARP6	56965	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	72543246	72543246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	PARP6-522	NM_020214	exon17	c.C1358T	p.P453L	TTGGCAGGAGGGC	.	172	78	175	0	.	20	9	11	0	0
UBL7	84993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74740854	74740854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	UBL7-91	NM_201265	exon10	c.C970T	p.H324Y	GGGCATGCTGTAG	.	225	101	225	0	.	89	44	45	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	4	4	0	0	C|0.615;G|0.385	0	0	0	0	0
ALG1	56052	bcgsc.ca	37	16	5132636	5132636	+	Silent	SNP	C	C	T	rs1047732	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	ALG1-92	NM_019109	exon11	c.C1149T	p.F383F	CATGTTCGGGTGC	.	48	5	63	0	C|0.537;T|0.463	30	30	0	0	0
NUTF2	10204	broad.mit.edu	37	16	67899046	67899046	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	NUTF2-68	NM_005796	exon2	c.C13A	p.P5T	GACAAGCCAATTT	.	122	10	89	2	.	142	140	2	0	0
NECAB2	54550	bcgsc.ca	37	16	84035446	84035446	+	Missense_Mutation	SNP	C	C	G	rs2271298	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	NECAB2-70	NM_019065	exon12	c.C1057G	p.L353V	AGCCCCCTGTGTA	.	221	7	250	2	C|0.697;G|0.303	69	69	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599659	88599659	+	Missense_Mutation	SNP	G	G	T	rs71395304	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	ZFPM1-90	NM_153813	exon10	c.G1293T	p.K431N	CAGAAAGGCCCTG	.	25	20	1	0	G|0.858;T|0.142	35	20	15	0	0
KIAA0753	9851	broad.mit.edu	37	17	6493296	6493296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	KIAA0753-90	NM_014804	exon18	c.G2589T	p.E863D	TCCTTCCTCTGTT	.	70	4	56	0	.	5	5	0	0	0
SLC2A4	6517	broad.mit.edu	37	17	7187306	7187306	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SLC2A4-90	NM_001042	exon5	c.G462T	p.G154G	ATCAGGGCTGGTG	.	77	4	76	0	.	60	60	0	0	0
RNF222	643904	hgsc.bcm.edu	37	17	8296383	8296383	+	Missense_Mutation	SNP	C	C	T	rs12601362	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	RNF222-68	NM_001146684	exon3	c.G397A	p.A133T	GCTGGGCGCTCTG	.	9	5	0	0	C|0.808;T|0.192	0	0	0	0	0
NDEL1	81565	ucsc.edu	37	17	8354151	8354151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	NDEL1-90	NM_001025579	exon6	c.T580C	p.S194P	AGAAAGTCGGCTC	.	113	2	119	1	.	29	28	1	0	0
ARHGAP44	9912	broad.mit.edu	37	17	12852499	12852499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	ARHGAP44-90	NM_014859	exon11	c.C904A	p.L302M	AAGAAGCTGAAAG	.	51	4	59	0	.	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	354	14	366	15	.	15	4	11	0	0
PSMD3	5709	broad.mit.edu	37	17	38144959	38144959	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	PSMD3-92	NM_002809	exon4	c.G573T	p.L191L	TGATCTGATGCAG	.	70	3	79	0	.	117	117	0	0	0
LLGL2	3993	broad.mit.edu	37	17	73565071	73565071	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	LLGL2-251	NM_004524	exon13	c.C1335A	p.G445G	GGACGGCACGGTG	.	95	8	52	2	.	2	2	0	0	0
SMCHD1	23347	bcgsc.ca	37	18	2688477	2688477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SMCHD1-46	NM_015295	exon6	c.G724T	p.A242S	AAGCAAGCTGTCT	.	54	4	78	0	.	1	1	0	0	0
RAX	30062	hgsc.bcm.edu	37	18	56940307	56940307	+	Missense_Mutation	SNP	G	G	T	rs2271733	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	RAX-90	NM_013435	exon1	c.C132A	p.D44E	CCCGTCGTCCTTG	.	7	4	4	0	G|0.801;T|0.199	0	0	0	0	0
CBLN2	147381	hgsc.bcm.edu	37	18	70209321	70209321	+	Silent	SNP	C	C	A	rs7237888		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	CBLN2-90	NM_182511	exon3	c.G75T	p.P25P	GCCGCCCGGCTCG	.	6	6	0	0	C|0.390;A|0.610	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	11	8	0	0	C|0.766;T|0.234	36	19	17	0	0
PCSK4	54760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1488279	1488279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	PCSK4-90	NM_017573	exon3	c.G295T	p.V99L	ACTGCACCTGCAG	.	139	49	110	0	.	0	0	0	0	0
JSRP1	126306	hgsc.bcm.edu	37	19	2253732	2253732	+	Missense_Mutation	SNP	G	G	A	rs74521370		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	JSRP1-91	NM_144616	exon5	c.C323T	p.P108L	GGCGGCGGCGGCG	.	8	4	0	0	G|0.994;A|0.006	0	0	0	0	0
C19orf10	56005	hgsc.bcm.edu	37	19	4670313	4670313	+	Missense_Mutation	SNP	C	C	G	rs2270090	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	C19orf10-90	NM_019107	exon1	c.G34C	p.G12R	TCGCGCCGACGCC	.	8	5	0	0	C|0.752;G|0.248	8	2	6	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8400651	8400651	+	Silent	SNP	C	C	G	rs11669559	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	KANK3-90	NM_198471	exon3	c.G60C	p.P20P	GGGGACCGGGCAC	.	9	6	0	0	C|0.880;G|0.120	1	1	0	0	0
ACP5	54	broad.mit.edu	37	19	11687251	11687251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	ACP5-90	NM_001111034	exon5	c.C542A	p.A181D	GTGCGGGCCAGCT	.	89	3	98	0	.	4	4	0	0	0
FBXW9	84261	broad.mit.edu	37	19	12800811	12800813	+	In_Frame_Del	DEL	CCA	CCA	-	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	FBXW9-227	NM_032301	exon6	c.995_997del	p.332_333del	GGCGGTCCACCAC	.	93	7	83	0	.	0	0	0	0	0
TSHZ3	57616	broad.mit.edu	37	19	31770238	31770240	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	TSHZ3-232	NM_020856	exon2	c.459_461del	p.153_154del	CTGCTACTGCTGC	.	321	7	320	0	.	0	0	0	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	16	16	0	0	G|0.349;A|0.651	0	0	0	0	0
LTBP4	8425	broad.mit.edu	37	19	41119074	41119074	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	LTBP4-93	.	.	.	.	CCGGGCGCCGTCG	.	48	8	11	0	.	18	17	1	0	0
DMWD	1762	broad.mit.edu	37	19	46289402	46289402	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	DMWD-90	NM_004943	exon3	c.A1352C	p.Y451S	TGCGGGTAGAGCA	.	205	54	61	12	.	0	0	0	0	0
GLTSCR2	29997	hgsc.bcm.edu	37	19	48258717	48258717	+	Missense_Mutation	SNP	A	A	G	rs1804994	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	GLTSCR2-514	NM_015710	exon9	c.A1166G	p.Q389R	GGCGGCAGAGGCG	.	4	4	0	0	A|0.308;G|0.692	25	0	25	0	0
TPRX1	284355	bcgsc.ca	37	19	48305555	48305555	+	Missense_Mutation	SNP	G	G	A	rs147380237		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	TPRX1-90	NM_198479	exon2	c.C713T	p.P238L	GGGATCGGGCCTG	.	41	6	38	0	G|0.989;A|0.011	0	0	0	0	0
KCNA7	3743	hgsc.bcm.edu	37	19	49575618	49575618	+	Silent	SNP	A	A	G	rs71352730	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	KCNA7-90	NM_031886	exon1	c.T225C	p.G75G	CCGCCCACCGGAC	.	21	11	2	0	A|0.868;G|0.132	0	0	0	0	0
LRRC4B	94030	hgsc.bcm.edu	37	19	51021057	51021057	+	Missense_Mutation	SNP	A	A	G	rs61751957		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	LRRC4B-205	NM_001080457	exon3	c.T1913C	p.V638A	CTGGCCACGGCGG	.	20	7	2	0	A|0.777;G|0.223	10	7	3	0	0
CDC42EP5	148170	hgsc.bcm.edu	37	19	54976403	54976403	+	Missense_Mutation	SNP	G	G	A	rs78611575		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	CDC42EP5-90	NM_145057	exon3	c.C329T	p.A110V	GGGCGCGCCGCGT	.	6	6	0	0	G|0.948;A|0.052	2	1	1	0	0
PPP1R12C	54776	hgsc.bcm.edu	37	19	55628609	55628609	+	Silent	SNP	A	A	G	rs66707428		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	PPP1R12C-227	NM_017607	exon1	c.T303C	p.G101G	GCTGATACCGTCG	.	7	5	0	0	A|0.808;G|0.192	3	1	2	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	ZNF787-69	NM_001002836	exon3	c.1101_1103del	p.367_368del	GCGGCCTCGTCGT	.	12	12	0	0	.	0	0	0	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	8	4	0	0	G|0.301;C|0.699	0	0	0	0	0
MYT1L	23040	bcgsc.ca	37	2	1805503	1805503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	MYT1L-95	NM_015025	exon23	c.C3235A	p.Q1079K	CCATCTGGGAATT	.	56	4	43	0	.	0	0	0	0	0
NTSR2	23620	hgsc.bcm.edu	37	2	11809650	11809650	+	Silent	SNP	C	C	G	rs199659575	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	NTSR2-946	NM_012344	exon1	c.G606C	p.A202A	TTGGAGCGCGGTG	.	20	14	4	0	C|0.994;G|0.006	0	0	0	0	0
TMEM247	388946	bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	.	NM_001145051	exon2	c.C382G	p.Q128E	CAGCGGCAGCGGC	.	375	23	253	3	G|1.000;|0.000	0	0	0	0	0
TMEM247	388946	hgsc.bcm.edu	37	2	46707887	46707887	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	.	NM_001145051	exon2	c.A461C	p.E154A	AGCAAGAGGCGGC	.	181	16	82	0	.	0	0	0	0	0
C2orf81	388963	broad.mit.edu	37	2	74642280	74642280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	.	NM_001145054	exon4	c.A943C	p.T315P	GGCGGGTGGCGCC	.	128	38	49	6	.	3	3	0	0	0
TEKT4	150483	ucsc.edu	37	2	95542377	95542377	+	Missense_Mutation	SNP	C	C	T	rs72817671	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	TEKT4-155	NM_144705	exon6	c.C1171T	p.R391C	TCCCTGCGCAACC	.	72	9	63	6	C|0.704;T|0.296	0	0	0	0	0
UBR3	130507	broad.mit.edu;bcgsc.ca	37	2	170762566	170762566	+	Silent	SNP	A	A	T	rs10194785	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	UBR3-68	NM_172070	exon10	c.A1671T	p.L557L	AGAACTAAACGAG	.	92	6	112	1	A|0.748;T|0.252	3	3	0	0	0
CCDC150	284992	hgsc.bcm.edu	37	2	197531519	197531519	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	.	NM_001080539	exon7	c.839delA	p.Q280fs	AGGAACAAAAAAA	.	217	15	157	0	.	0	0	0	0	0
ALPPL2	251	hgsc.bcm.edu	37	2	233274476	233274476	+	Missense_Mutation	SNP	G	G	C	rs61730278	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	ALPPL2-91	NM_031313	exon11	c.G1493C	p.R498P	CGCCCCGCGCCGG	.	17	12	0	0	G|0.946;C|0.054	0	0	0	0	0
SNED1	25992	hgsc.bcm.edu	37	2	242011084	242011084	+	Missense_Mutation	SNP	T	T	C	rs17440466	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SNED1-72	NM_001080437	exon25	c.T3683C	p.L1228P	CGGAGCTGCGCCT	.	19	10	5	0	T|0.877;C|0.123	10	4	6	0	0
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57484420	57484420	+	Missense_Mutation	SNP	C	C	T	rs11554273	bycluster	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	GNAS-4767	NM_080425	exon8	c.C2530T	p.R844C	CGCTGCCGTGTCC	.	133	64	143	0	C|1.000	2456	1242	1213	0	1
KRTAP10-2	386679	hgsc.bcm.edu;ucsc.edu	37	21	45970774	45970774	+	Missense_Mutation	SNP	G	G	A	rs76536096	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	KRTAP10-2-135	NM_198693	exon1	c.C568T	p.P190S	AGACAGGCTTGCA	.	208	24	206	0	G|0.917;A|0.083	0	0	0	0	0
PCNT	5116	hgsc.bcm.edu	37	21	47831845	47831845	+	Missense_Mutation	SNP	G	G	A	rs34268261	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	PCNT-141	NM_006031	exon28	c.G5858A	p.R1953H	AGGCCCGCAGAGC	.	15	9	0	0	G|0.955;A|0.045	0	0	0	0	0
LZTR1	8216	broad.mit.edu	37	22	21343966	21344002	+	In_Frame_Del	DEL	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	-	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	LZTR1-280	NM_006767	exon7	c.646_651del	p.216_217del	TGCTGGGAGGAGG	.	58	7	62	0	.	0	0	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	19	13	1	0	A|0.354;G|0.646	0	0	0	0	0
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	391155	391155	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	CHL1-583	NM_001253388	exon8	c.A962T	p.K321I	AGGACAAAGGAAA	.	134	59	83	0	.	0	0	0	0	0
SEMA5B	54437	hgsc.bcm.edu	37	3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	rs2276782	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SEMA5B-157	NM_001256347	exon18	c.T2681A	p.V894D	AGGAGGACCTCCA	.	5	5	0	0	T|0.412;A|0.588	0	0	0	0	0
PLXNA1	5361	hgsc.bcm.edu	37	3	126733053	126733053	+	Silent	SNP	C	C	T	rs11719489	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	PLXNA1-93	NM_032242	exon11	c.C2439T	p.R813R	CCTGCGCGAGAGC	.	21	18	0	0	C|0.900;T|0.100	1	0	1	0	0
FAM157A	728262	bcgsc.ca	37	3	197880136	197880136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	.	NM_001145248	exon2	c.A215G	p.Q72R	GGCAGCAGCAGCA	.	518	16	543	9	.	0	0	0	0	0
TNIP2	79155	hgsc.bcm.edu	37	4	2757800	2757800	+	Missense_Mutation	SNP	G	G	C	rs74548850	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	TNIP2-90	NM_024309	exon1	c.C217G	p.R73G	GGAAGCGCGCAAC	.	15	8	0	0	G|0.957;C|0.043	1	1	0	0	0
CCDC96	257236	hgsc.bcm.edu	37	4	7044357	7044357	+	Silent	SNP	A	A	G	rs871133		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	CCDC96-90	NM_153376	exon1	c.T309C	p.V103V	AGCCCCAACCTCG	.	5	5	0	0	A|0.036;G|0.964	0	0	0	0	0
SOWAHB	345079	hgsc.bcm.edu	37	4	77818202	77818202	+	Silent	SNP	T	T	C	rs2645674	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	.	NM_001029870	exon1	c.A801G	p.T267T	CCTGCTTGTCGCA	.	5	5	0	0	T|0.691;C|0.309	0	0	0	0	0
NSUN2	54888	hgsc.bcm.edu	37	5	6633042	6633042	+	Silent	SNP	C	C	T	rs10062086	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	NSUN2-91	NM_017755	exon1	c.G51A	p.E17E	CGCGTCCTCCGGC	.	8	7	1	0	C|0.687;T|0.313	6	0	6	0	0
NPR3	4883	broad.mit.edu	37	5	32712221	32712221	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	NPR3-91	NM_000908	exon1	c.C339T	p.L113L	TGCGCTCTTCAGC	.	261	7	141	0	.	0	0	0	0	0
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	37196023	37196023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	C5orf42-94	NM_023073	exon21	c.G3748A	p.A1250T	AAAATGCGATACC	.	320	19	342	0	.	1	1	0	0	0
RAD17	5884	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	68670480	68670480	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	RAD17-205	NM_133339	exon3	c.A326T	p.K109I	AAAAGAAAATTGA	.	304	100	266	0	.	3	2	1	0	0
ARHGEF28	64283	broad.mit.edu;bcgsc.ca	37	5	73165981	73165981	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	.	NM_001080479	exon21	c.C2513A	p.S838X	ATCCCTCATTTTG	.	254	11	233	0	.	5	5	0	0	0
MCC	4163	bcgsc.ca	37	5	112458382	112458382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	MCC-69	NM_001085377	exon6	c.G1026A	p.M342I	CTCACCCATGTCA	.	232	108	218	4	.	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	.	NM_175873	exon1	c.G371C	p.R124P	TGGTCCGGGTGCC	.	6	6	0	0	G|0.980;C|0.020	0	0	0	0	0
STC2	8614	broad.mit.edu	37	5	172745086	172745086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	STC2-93	NM_003714	exon4	c.C673A	p.R225S	GCTGGCGCTCGGG	.	79	3	87	0	.	58	58	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	PPP1R3G-136	NM_001145115	exon1	c.A351G	p.A117A	GGACGCACAGCTC	.	6	6	0	0	A|0.006;G|0.994	21	0	21	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086211	5086211	+	Silent	SNP	G	G	C	rs584962		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	PPP1R3G-136	NM_001145115	exon1	c.G492C	p.L164L	GCGCCTGCGAAGC	.	5	5	0	0	G|0.000;C|1.000	17	0	17	0	0
TULP1	7287	bcgsc.ca	37	6	35477025	35477025	+	Missense_Mutation	SNP	C	C	G	rs2064318	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	TULP1-92	NM_003322	exon8	c.G783C	p.K261N	ATTGCTCTTCTTT	.	127	8	118	0	C|0.349;G|0.651	0	0	0	0	0
TULP1	7287	bcgsc.ca	37	6	35477032	35477032	+	Missense_Mutation	SNP	A	A	G	rs2064317	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	TULP1-92	NM_003322	exon8	c.T776C	p.I259T	TTCTTTATCACCG	.	136	5	122	0	A|0.641;G|0.359	0	0	0	0	0
RPF2	84154	broad.mit.edu	37	6	111346773	111346773	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	RPF2-92	NM_032194	exon10	c.T909A	p.I303I	AAGAATTAAAAAA	.	58	8	54	2	.	34	34	0	0	0
ENPP3	5169	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	132014711	132014711	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	ENPP3-95	NM_005021	exon15	c.C1359T	p.N453N	CAAGAACGTCAGA	.	273	108	309	2	.	19	10	9	0	0
GIGYF1	64599	broad.mit.edu	37	7	100283970	100283970	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	GIGYF1-136	NM_022574	exon8	c.T781G	p.C261G	CACCACACCCTCC	.	81	14	62	7	.	0	0	0	0	0
CPA1	1357	broad.mit.edu	37	7	130021608	130021608	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	CPA1-91	NM_001868	exon3	c.G285A	p.S95S	GCAGTCGCTGCTG	.	176	4	179	1	.	0	0	0	0	0
RP1L1	94137	hgsc.bcm.edu	37	8	10468964	10468964	+	Missense_Mutation	SNP	G	G	A	rs148936402		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	RP1L1-139	NM_178857	exon4	c.C2644T	p.R882W	GCCCCCGGGCAGT	.	28	16	1	0	G|0.999;A|0.001	0	0	0	0	0
NKX3-1	4824	hgsc.bcm.edu	37	8	23540249	23540249	+	Missense_Mutation	SNP	G	G	A	rs2228013	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	NKX3-1-90	NM_006167	exon1	c.C154T	p.R52C	GGTCGCGCTGTCT	.	9	8	0	0	G|0.977;A|0.023	0	0	0	0	0
SFRP1	6422	broad.mit.edu	37	8	41166547	41166547	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SFRP1-1082	NM_003012	exon1	c.C132A	p.G44G	GTACGGGCCGATG	.	97	9	82	2	.	0	0	0	0	0
C8orf22	492307	broad.mit.edu;bcgsc.ca	37	8	49985442	49985442	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	.	NM_001256598	exon2	c.G53A	p.R18Q	ATTATCGAAGTAA	.	213	9	265	1	.	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	11	11	0	0	G|0.246;A|0.754	11	0	11	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	5	5	0	0	G|0.992;C|0.006	4	0	4	0	0
RUSC2	9853	broad.mit.edu	37	9	35546626	35546626	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	RUSC2-91	NM_014806	exon2	c.T108G	p.G36G	TGGAGGTGGTGGG	.	191	19	203	24	.	0	0	0	0	0
IKBKAP	8518	broad.mit.edu;bcgsc.ca	37	9	111674681	111674681	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	IKBKAP-318	NM_003640	exon11	c.G1052A	p.W351X	GGGTCCCACATCA	.	293	13	260	0	.	8	8	0	0	0
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113196694	113196694	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SVEP1-75	NM_153366	exon30	c.G4981C	p.G1661R	GGAAGCCTGGATC	.	161	59	216	0	.	0	0	0	0	0
MUSK	4593	bcgsc.ca	37	9	113538122	113538122	+	Missense_Mutation	SNP	G	G	A	rs2274419	byfrequency	TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	MUSK-1379	NM_005592	exon9	c.G1239A	p.M413I	GGTAATGGAAGAG	.	248	8	237	0	G|0.885;A|0.115	0	0	0	0	0
SLC2A6	11182	broad.mit.edu	37	9	136340732	136340732	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SLC2A6-90	NM_017585	exon5	c.C564A	p.G188G	CAGGAGGCCTGGG	.	87	8	10	0	.	0	0	0	0	0
LRRC26	389816	hgsc.bcm.edu	37	9	140064315	140064315	+	Missense_Mutation	SNP	C	C	A	rs7019671		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	LRRC26-22	NM_001013653	exon1	c.G81T	p.Q27H	CGACACCTGGGCC	.	4	4	0	0	C|0.733;A|0.267	0	0	0	0	0
SSX3	10214	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	48214670	48214670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SSX3-130	NM_021014	exon2	c.C15A	p.D5E	AAAGGTGTCATCT	.	3238	460	1372	4	.	0	0	0	0	0
CACNA1F	778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49067892	49067892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	CACNA1F-176	NM_005183	exon36	c.G4183A	p.G1395R	GATTTCCGGGAAG	.	1381	184	504	0	.	0	0	0	0	0
SHROOM4	57477	broad.mit.edu	37	X	50376327	50376327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SHROOM4-131	NM_020717	exon4	c.A2746G	p.N916D	TCATATTTCTCTT	.	1209	21	431	1	.	1	1	0	0	0
GPR112	139378	broad.mit.edu	37	X	135427636	135427636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	GPR112-183	NM_153834	exon6	c.G1771T	p.A591S	ACACTTGCATCTA	.	80	3	176	0	.	0	0	0	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46012219	46012220	+	In_Frame_Ins	INS	-	-	GGGGCGCAGCAGCTG	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	KRTAP10-6-90	NM_198688	exon1	c.147_148insCAGCTGCTGCGCCCC	p.P49delinsPSCCAP	GGGGGCCGGGGCG	.	75	8	25	0	.	0	0	0	0	0
SHOX2	6474	hgsc.bcm.edu	37	3	157823581	157823582	+	In_Frame_Ins	INS	-	-	CACCTCCTC	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	SHOX2-90	NM_001163678	exon1	c.233_234insGAGGAGGTG	p.V78delinsGGGV	CCTCCTACACCTC	.	39	12	19	0	.	0	0	0	0	0
KRTAP10-2	386679	hgsc.bcm.edu	37	21	45970771	45970772	+	Missense_Mutation	DNP	CA	CA	TG	novel		TCGA-OR-A5KV-01A-11D-A29I-10	TCGA-OR-A5KV-10A-01D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d8ea55c4-f064-4756-9e70-680a224f3c28	49134116-41eb-416d-a052-81c9fa07055b	.	KRTAP10-2-135	NM_198693	exon1	c.T570C	p.V191I	GCAGACAGGCTTG	.	216	0	217	0	A|0.908;G|0.092	0	0	0	0	0