Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 TTLL10 254173 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 1117120 1117120 + Splice_Site SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTLL10-153 NM_001130045 exon9 c.756-1G>A . GCTGCAGGCTGGA . 392 94 298 0 . 0 0 0 0 0 MXRA8 54587 hgsc.bcm.edu 37 1 1290077 1290077 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MXRA8-90 NM_032348 exon5 c.G934A p.G312S GGGCGCCGCTGTG . 36 14 2 0 . 0 0 0 0 0 CCNL2 81669 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 1334033 1334033 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CCNL2-70 NM_030937 exon2 c.C307T p.Q103X ACACCTGCCCGGT . 245 124 215 0 . 0 0 0 0 0 GNB1 2782 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 1747196 1747196 + Silent SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GNB1-227 NM_002074 exon5 c.A202C p.R68R CCTACCTGGAGTC . 176 88 115 1 . 0 0 0 0 0 PANK4 55229 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 2440355 2440355 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PANK4-158 NM_018216 exon19 c.G2253T p.A751A CAGCCACGCGTTC . 220 104 77 0 . 0 0 0 0 0 PANK4 55229 broad.mit.edu;bcgsc.ca 37 1 2445885 2445885 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PANK4-158 NM_018216 exon11 c.G1395C p.A465A CTGGCTCGCCACT . 90 29 87 2 . 0 0 0 0 0 MMEL1 79258 broad.mit.edu 37 1 2560819 2560821 + In_Frame_Del DEL CAG CAG - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MMEL1-90 NM_033467 exon2 c.103_105del p.35_35del GGTCACCAGCAGC . 225 7 30 0 . 0 0 0 0 0 PRDM16 63976 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 3328612 3328612 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRDM16-660 NM_022114 exon9 c.G1851C p.T617T GGACACGACCACG . 298 62 174 1 . 0 0 0 0 0 TP73 7161 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 3639930 3639930 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TP73-415 NM_005427 exon6 c.C629T p.P210L CTGCTCCAGCCAG . 731 161 597 2 . 0 0 0 0 0 CCDC27 148870 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 3669101 3669101 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CCDC27-91 NM_152492 exon1 c.56delG p.R19fs ATCCACGGGAAAA . 176 88 101 0 . 0 0 0 0 0 CHD5 26038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 6196856 6196856 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CHD5-719 NM_015557 exon16 c.C2506T p.L836L AGCCCAGGATGGC . 158 37 104 0 . 0 0 0 0 0 CAMTA1 23261 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 7723792 7723792 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CAMTA1-520 NM_015215 exon9 c.G1185T p.Q395H GTCCCAGAGCGCC . 227 118 170 1 . 0 0 0 0 0 PER3 8863 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 7869982 7869982 + Nonsense_Mutation SNP C C A rs140055805 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PER3-93 NM_016831 exon11 c.C1269A p.Y423X CGGCTACGGGAGC . 297 143 215 1 C|1.000;T|0.000 0 0 0 0 0 SRM 6723 hgsc.bcm.edu 37 1 11119899 11119899 + Silent SNP T T C rs7545802 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SRM-90 NM_003132 exon1 c.A102G p.S34S CTGCAGTGACAGG . 7 7 0 0 T|0.001;C|0.999 0 0 0 0 0 VPS13D 55187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 12339596 12339596 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . VPS13D-95 NM_015378 exon20 c.G4491A p.L1497L TAAACTGGAGAAG . 169 49 156 0 . 0 0 0 0 0 VPS13D 55187 broad.mit.edu 37 1 12476832 12476832 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . VPS13D-95 NM_015378 exon65 c.G12285T p.G4095G TGTCGGGGGCCTC . 68 17 46 2 . 0 0 0 0 0 PRAMEF1 65121 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 12854331 12854331 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRAMEF1-22 NM_023013 exon3 c.G555C p.L185L TAAGCTGGTCAAT . 289 134 261 0 . 0 0 0 0 0 PRAMEF11 440560 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 12887562 12887562 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001146344 exon3 c.C295A p.P99T TCCTTGGACAGTC . 72 21 43 0 . 0 0 0 0 0 PRAMEF2 65122 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 12918933 12918933 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRAMEF2-68 NM_023014 exon2 c.G69C p.L23F GGCCTTGTCCATC . 152 90 165 1 . 0 0 0 0 0 PRAMEF10 343071 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 12954838 12954838 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRAMEF10-90 NM_001039361 exon3 c.G445T p.V149L TGAACACCTTCAA . 143 69 146 1 . 0 0 0 0 0 CROCC 9696 hgsc.bcm.edu 37 1 17265519 17265519 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CROCC-137 NM_014675 exon12 c.G1490T p.R497L CACCGCGGCGCTC . 20 12 1 0 . 0 0 0 0 0 ATP13A2 23400 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 17313430 17313430 + Silent SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ATP13A2-93 NM_022089 exon27 c.A3105G p.T1035T GGCCACTGTCCTG . 159 75 72 1 . 0 0 0 0 0 PAX7 5081 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 19018406 19018406 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PAX7-1630 NM_002584 exon5 c.G745T p.E249X CGCGAGGAGCTGG . 203 46 169 1 . 0 0 0 0 0 PLA2G5 5322 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 20416346 20416346 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLA2G5-515 NM_000929 exon4 c.C250T p.Q84X CGCACACAGTCCT . 181 48 148 0 . 0 0 0 0 0 VWA5B1 127731 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 20669628 20669628 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001039500 exon16 c.C2368A p.P790T GACCCCCCAGCCG . 221 57 70 0 . 0 0 0 0 0 VWA5B1 127731 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 20680294 20680294 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001039500 exon22 c.C3186A p.A1062A CGAAGCCTTCTGT . 139 62 112 2 . 0 0 0 0 0 HSPG2 3339 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 22179236 22179236 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HSPG2-141 NM_005529 exon52 c.A6681T p.L2227L GGCCTCTAGGGGG . 171 43 110 0 . 0 0 0 0 0 CNKSR1 10256 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 26509747 26509747 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CNKSR1-846 NM_006314 exon7 c.G684T p.Q228H CACCCAGGTGAGA . 317 80 277 0 . 0 0 0 0 0 RPS6KA1 6195 hgsc.bcm.edu 37 1 26856462 26856462 + Silent SNP T T G rs11800553 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RPS6KA1-510 NM_002953 exon1 c.T51G p.P17P AGTGCCTCTGGAC . 8 8 0 0 T|0.065;G|0.935 0 0 0 0 0 WDTC1 23038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 27627876 27627876 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WDTC1-91 NM_001276252 exon13 c.G1392A p.P464P ATTTCCGGAGCAG . 119 24 119 0 . 0 0 0 0 0 OPRD1 4985 hgsc.bcm.edu 37 1 29189702 29189702 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OPRD1-69 NM_000911 exon3 c.C1026A p.P342P AGACCCCAGCAGC . 33 10 3 0 . 0 0 0 0 0 MECR 51102 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 29520573 29520573 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MECR-91 NM_016011 exon10 c.G1083T p.M361I GGGCTTCATGGAG . 102 29 76 0 . 0 0 0 0 0 PTPRU 10076 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 29644272 29644272 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PTPRU-291 NM_005704 exon26 c.G3556T p.V1186F AACTCGGTCACCC . 108 32 35 1 . 0 0 0 0 0 PUM1 9698 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 31447604 31447604 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PUM1-92 NM_014676 exon10 c.G1400T p.G467V TAGACTCCCCAGG . 116 46 85 0 . 0 0 0 0 0 BAI2 576 bcgsc.ca 37 1 32196920 32196920 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BAI2-526 NM_001703 exon29 c.G3861T p.V1287V AGGGCCCACGAGG . 406 210 309 4 . 0 0 0 0 0 PTP4A2 8073 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 32374453 32374453 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PTP4A2-650 NM_080391 exon6 c.G504A p.X168X TTCCTTCTACTGA . 92 41 91 0 . 0 0 0 0 0 LCK 3932 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 32741016 32741016 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LCK-1378 NM_005356 exon5 c.G373T p.E125X GAGCCCGAACCGT . 398 198 292 0 . 0 0 0 0 0 CSMD2 114784 ucsc.edu;bcgsc.ca 37 1 34006180 34006180 + Silent SNP C C G rs1532308 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CSMD2-103 NM_052896 exon59 c.G9144C p.A3048A GAACACCGCGGGC . 390 201 280 3 C|0.991;T|0.009 0 0 0 0 0 HMGB4 127540 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 34329806 34329806 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HMGB4-90 NM_145205 exon2 c.T14A p.I5N AAGAAATCCAGCT . 163 37 145 0 . 0 0 0 0 0 C1orf94 84970 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 34662954 34662954 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C1orf94-90 NM_001134734 exon2 c.C449A p.S150Y GCAGCTCTCCCGA . 100 20 81 0 . 0 0 0 0 0 C1orf94 84970 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 34663403 34663403 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C1orf94-90 NM_001134734 exon2 c.C898A p.R300S CCTGCACGTCCTG . 107 53 101 0 . 0 0 0 0 0 RSPO1 284654 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 38078537 38078537 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RSPO1-22 NM_001242908 exon7 c.G682A p.A228T TCCTGGCCAGGTT . 95 27 94 0 . 0 0 0 0 0 EPHA10 284656 hgsc.bcm.edu 37 1 38227086 38227086 + Missense_Mutation SNP A A T rs4653328 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EPHA10-1246 NM_001099439 exon3 c.T841A p.F281I CGCAGAAGTCACC . 16 10 2 0 A|0.665;T|0.335 0 0 0 0 0 MACF1 23499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 39549943 39549943 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MACF1-165 NM_012090 exon3 c.G53T p.R18L GTGAGCGGTCTTG . 138 33 101 0 . 0 0 0 0 0 MACF1 23499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 39818684 39818684 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MACF1-165 NM_012090 exon40 c.A5019T p.K1673N GAGTAAAGCAGCA . 64 29 66 0 . 0 0 0 0 0 HIVEP3 59269 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 42045967 42045967 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HIVEP3-157 NM_024503 exon4 c.G4502T p.S1501I GACAGGCTGGACA . 133 35 103 0 . 0 0 0 0 0 HIVEP3 59269 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 42047294 42047294 + Silent SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HIVEP3-157 NM_024503 exon4 c.T3175C p.L1059L CCTCCAACTCAGA . 114 21 94 0 . 0 0 0 0 0 TCTEX1D4 343521 broad.mit.edu 37 1 45271742 45271742 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TCTEX1D4-91 NM_001013632 exon2 c.C599T p.A200V ACCGAGGCCAGCC . 67 5 26 0 . 0 0 0 0 0 ELAVL4 1996 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 50610817 50610817 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ELAVL4-516 NM_001144775 exon2 c.C249T p.F83F TCTCTTCGGGAGC . 187 73 181 0 . 0 0 0 0 0 ELAVL4 1996 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 50659488 50659488 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ELAVL4-516 NM_001144775 exon4 c.G457T p.V153F CTCTATGTTAGCG . 259 62 219 0 . 0 0 0 0 0 ZFYVE9 9372 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 52740214 52740214 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZFYVE9-230 NM_004799 exon8 c.G2704C p.D902H CCTGAAGATGGCC . 125 8 119 0 . 0 0 0 0 0 WDR78 79819 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 67306280 67306280 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WDR78-92 NM_207014 exon9 c.G1366A p.E456K CCTCCTCCTTCTT . 143 38 98 0 . 0 0 0 0 0 LRRC7 57554 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 70446116 70446116 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRRC7-163 NM_020794 exon7 c.G652T p.A218S AATAATGCATTAC . 72 25 74 0 . 0 0 0 0 0 LRRC7 57554 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 70504166 70504166 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRRC7-163 NM_020794 exon19 c.C2545A p.P849T AGAACCCCTAGTC . 269 59 228 0 . 0 0 0 0 0 LRRC7 57554 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 70505345 70505345 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRRC7-163 NM_020794 exon19 c.G3724A p.D1242N TATGGTGACAAGC . 139 31 126 1 . 0 0 0 0 0 SRSF11 9295 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 70701183 70701183 + Splice_Site SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SRSF11-227 NM_001190987 exon6 c.541-1G>A . TTTACAGTCTCTT . 31 7 40 0 . 0 0 0 0 0 LRRIQ3 127255 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 74507594 74507594 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRRIQ3-92 NM_001105659 exon7 c.G1021T p.V341L CATCCACAATTTC . 31 9 19 0 . 0 0 0 0 0 LHX8 431707 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 75622718 75622718 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LHX8-93 NM_001001933 exon9 c.C951A p.P317P CGTGCCCCAAGAT . 237 58 205 0 . 0 0 0 0 0 ASB17 127247 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 76397853 76397853 + Missense_Mutation SNP A A C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ASB17-227 NM_080868 exon1 c.T124G p.C42G CGTAACAGTGATA . 166 38 121 0 . 0 0 0 0 0 ST6GALNAC3 256435 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 76877898 76877898 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ST6GALNAC3-95 NM_001160011 exon3 c.C419T p.P140L AAAACCCTGATTA . 198 90 189 0 . 0 0 0 0 0 AK5 26289 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 77759610 77759610 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AK5-227 NM_174858 exon3 c.C380A p.P127H TTGATCCTACCAG . 161 21 157 0 . 0 0 0 0 0 AK5 26289 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 77987587 77987587 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AK5-227 NM_174858 exon12 c.T1387A p.Y463N GACGGCTATCCTC . 90 43 57 0 . 0 0 0 0 0 ELTD1 64123 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 79403806 79403806 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ELTD1-24 NM_022159 exon5 c.C555A p.T185T AGAAAGGGTGTCC . 195 38 221 3 . 0 0 0 0 0 LPHN2 23266 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 82372734 82372734 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LPHN2-525 NM_012302 exon3 c.G106T p.V36L GGGCTGGTGAGGC . 110 54 85 0 . 0 0 0 0 0 PRKACB 5567 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 84649726 84649726 + Nonsense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRKACB-1083 NM_182948 exon4 c.A385T p.K129X GTTGTTAAACTGA . 125 57 115 1 . 0 0 0 0 0 LPAR3 23566 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 85279733 85279733 + Silent SNP G G T rs141619600 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LPAR3-502 NM_012152 exon3 c.C858A p.S286S CACGACGGAGTTG . 192 42 149 1 G|1.000;A|0.000 0 0 0 0 0 ODF2L 57489 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 86841918 86841918 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ODF2L-69 NM_001007022 exon8 c.C808G p.Q270E ATACCTGATCTCT . 68 16 61 0 . 0 0 0 0 0 GBP4 115361 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 89652054 89652054 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GBP4-90 NM_052941 exon10 c.C1669A p.L557I CTCTGAGAAGGTT . 56 13 63 0 . 0 0 0 0 0 ZNF644 84146 ucsc.edu;bcgsc.ca 37 1 91406670 91406670 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF644-155 NM_201269 exon3 c.G241T p.D81Y ATTTGTCCTTTGA . 170 71 182 3 . 0 0 0 0 0 HFM1 164045 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 91866610 91866610 + Silent SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HFM1-112 NM_001017975 exon2 c.T30A p.S10S TTCCAAAGAAAAC . 132 70 146 0 . 0 0 0 0 0 TGFBR3 7049 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 92182149 92182149 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TGFBR3-93 NM_003243 exon11 c.G1683T p.L561L GGTGAACAGGGAA . 226 67 223 0 . 0 0 0 0 0 TGFBR3 7049 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 92193214 92193214 + Splice_Site DEL A A - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TGFBR3-93 NM_001195684 exon9 c.885+2T>- . CAACTTACAATAA . 92 20 98 0 . 0 0 0 0 0 BTBD8 284697 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 92568096 92568096 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BTBD8-91 NM_183242 exon3 c.G414T p.M138I GATAATGGAGATT . 121 57 125 0 . 0 0 0 0 0 SNX7 51375 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 99164270 99164270 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SNX7-229 NM_015976 exon6 c.G847A p.D283N TATTTTGATGAAA . 36 8 40 0 . 0 0 0 0 0 LPPR4 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 99764707 99764707 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LPPR4-93 NM_001166252 exon4 c.A655T p.N219Y TCTCTGAATGTAT . 153 30 146 0 . 0 0 0 0 0 LPPR4 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 99771539 99771539 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LPPR4-93 NM_014839 exon7 c.C1265T p.T422I CCAATACCCCATC . 140 43 150 0 . 0 0 0 0 0 LPPR4 0 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 99771739 99771739 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LPPR4-93 NM_014839 exon7 c.G1465T p.G489W AGGGTAGGGGTGA . 318 78 344 1 . 0 0 0 0 0 LPPR4 0 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 99772033 99772033 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LPPR4-93 NM_014839 exon7 c.G1759T p.G587C CAGCAGGGTGTCC . 366 102 313 1 . 0 0 0 0 0 LPPR4 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 99772258 99772258 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LPPR4-93 NM_014839 exon7 c.G1984T p.E662X ACTTACGAGCTCA . 243 120 255 0 . 0 0 0 0 0 SASS6 163786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 100588833 100588833 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SASS6-70 NM_194292 exon3 c.C139T p.R47C TCAGACGAATAAC . 83 38 91 0 . 0 0 0 0 0 TRMT13 54482 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 100606445 100606445 + Missense_Mutation SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_019083 exon7 c.T539G p.L180R AGTTACTTGGTCC . 83 32 95 0 . 0 0 0 0 0 CDC14A 8556 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 100964629 100964629 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CDC14A-290 NM_003672 exon15 c.G1566T p.Q522H CTCCCAGCCAACT . 172 44 137 0 . 0 0 0 0 0 COL11A1 1301 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 103345394 103345394 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COL11A1-586 NM_080629 exon66 c.C5155A p.R1719R TTTGCCGAGCAGA . 137 76 142 1 . 0 0 0 0 0 COL11A1 1301 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 103363705 103363705 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COL11A1-586 NM_080629 exon57 c.C4314A p.G1438G ATCTTGGCCTGCA . 156 75 126 1 . 0 0 0 0 0 NTNG1 22854 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 108023431 108023431 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NTNG1-140 NM_001113226 exon8 c.T1589A p.L530Q CCACGCTGCTGGG . 89 34 38 0 . 0 0 0 0 0 VAV3 10451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 108138963 108138963 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . VAV3-1339 NM_006113 exon25 c.G2221T p.E741X CAAGTTCCTTTGG . 59 12 51 0 . 0 0 0 0 0 VAV3 10451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 108417589 108417589 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . VAV3-1339 NM_006113 exon2 c.G255T p.T85T TCCAAACGTCTCA . 172 31 192 0 . 0 0 0 0 0 FAM102B 284611 bcgsc.ca 37 1 109170821 109170821 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM102B-135 NM_001010883 exon7 c.G589T p.E197X CCAGACGAACTTG . 531 210 557 4 . 0 0 0 0 0 PRPF38B 55119 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 109242505 109242505 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRPF38B-90 NM_018061 exon6 c.A1504G p.R502G CGTAGTAGAAGCA . 156 43 188 1 . 0 0 0 0 0 AMIGO1 57463 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 110050171 110050171 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AMIGO1-136 NM_020703 exon2 c.1364delG p.G455fs AGCTTGCCGTTTT . 171 38 156 0 . 0 0 0 0 0 GPR61 83873 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 110085990 110085990 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR61-91 NM_031936 exon2 c.C346T p.R116C GCCTGCCGCCTCT . 97 49 99 0 . 0 0 0 0 0 GNAT2 2780 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 110148630 110148630 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GNAT2-227 NM_005272 exon6 c.A682T p.S228C AGGCACTGAGGGC . 269 57 264 1 . 0 0 0 0 0 KCNC4 3749 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 110766353 110766353 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KCNC4-154 NM_001039574 exon2 c.C1446A p.A482A CCTGGCCATGGCC . 128 25 159 0 . 0 0 0 0 0 FAM19A3 284467 ucsc.edu;bcgsc.ca 37 1 113266683 113266683 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM19A3-90 NM_182759 exon4 c.C314A p.P105Q GCCTGCCGGGGGA . 235 112 238 3 . 0 0 0 0 0 VANGL1 81839 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 116206308 116206308 + Silent SNP G G T rs186509771 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . VANGL1-226 NM_001172412 exon4 c.G231T p.T77T CACCACGGCCATC . 124 33 133 0 G|0.999;A|0.000 0 0 0 0 0 ZNF697 90874 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 120165428 120165428 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF697-23 NM_001080470 exon3 c.G1538T p.R513L TGGATGCGGCGGT . 174 81 123 1 . 0 0 0 0 0 NOTCH2 4853 hgsc.bcm.edu 37 1 120611964 120611964 + Missense_Mutation SNP G G C rs11810554 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NOTCH2-1441 NM_024408 exon1 c.C57G p.C19W GGCCGCGCAGCAC . 11 7 0 0 G|0.680;C|0.320 0 0 0 0 0 NOTCH2 4853 hgsc.bcm.edu 37 1 120612006 120612006 + Silent SNP G G A rs77243975 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NOTCH2-1441 NM_024408 exon1 c.C15T p.R5R AGCGGGGCGCAGG . 11 11 1 0 G|0.500;A|0.500 0 0 0 0 0 PDE4DIP 9659 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 144852481 144852481 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PDE4DIP-663 NM_014644 exon44 c.C7018A p.L2340M ATGGCAGAGCCCT . 102 38 44 0 . 0 0 0 0 0 PDE4DIP 9659 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 144854656 144854656 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PDE4DIP-663 NM_014644 exon42 c.G6814T p.G2272X ATTCTCCCTGGAT . 225 29 155 0 . 0 0 0 0 0 PDE4DIP 9659 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 144865885 144865885 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PDE4DIP-663 NM_014644 exon35 c.C5695G p.Q1899E AGAGCTGAGGTAT . 221 15 196 0 . 0 0 0 0 0 NBPF10 100132406 broad.mit.edu 37 1 145323656 145323656 + Missense_Mutation SNP A A T rs75252120 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001039703 exon27 c.A3493T p.I1165F GCAGGAATTAAAA . 98 16 79 1 A|0.625;T|0.375 0 0 0 0 0 ITGA10 8515 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 145533058 145533058 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ITGA10-231 NM_003637 exon11 c.G1153A p.G385R CAGGATGGGATTC . 74 25 44 0 . 0 0 0 0 0 ITGA10 8515 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 145533059 145533059 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ITGA10-231 NM_003637 exon11 c.G1154T p.G385V AGGATGGGATTCT . 76 25 46 1 . 0 0 0 0 0 GJA8 2703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 147380254 147380254 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GJA8-138 NM_005267 exon2 c.C172T p.Q58X ACCCAGCAGCCTG . 270 75 118 0 . 0 0 0 0 0 PSMD4 5710 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 151236481 151236481 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PSMD4-90 NM_002810 exon3 c.T259C p.C87R ACCTTCTGCACGG . 339 93 201 1 . 0 0 0 0 0 POGZ 23126 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 151377850 151377850 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . POGZ-93 NM_015100 exon19 c.C3661G p.R1221G TGCTGCGCTGGCA . 176 29 178 1 . 0 0 0 0 0 POGZ 23126 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 151402135 151402135 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . POGZ-93 NM_015100 exon5 c.G512C p.G171A ACAATCCCAACCT . 152 31 71 0 . 0 0 0 0 0 THEM4 117145 hgsc.bcm.edu 37 1 151881885 151881885 + Missense_Mutation SNP A A C rs3748805 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . THEM4-522 NM_053055 exon1 c.T50G p.L17R GGCGGCAGGCACA . 13 8 0 0 T|0.073;G|0.921 0 0 0 0 0 TCHH 7062 hgsc.bcm.edu 37 1 152084432 152084432 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TCHH-72 NM_007113 exon3 c.C1261G p.R421G GCTCGCGCCTCAG . 56 7 2 0 . 0 0 0 0 0 RPTN 126638 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 152129433 152129433 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RPTN-68 NM_001122965 exon3 c.C142T p.P48S CATTTGGTCTCTG . 107 27 67 0 . 0 0 0 0 0 HRNR 388697 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 152188311 152188311 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HRNR-93 NM_001009931 exon3 c.C5794T p.Q1932X AAGACTGACGGGA . 1978 183 1106 2 . 0 0 0 0 0 FLG 2312 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 152276700 152276700 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FLG-106 NM_002016 exon3 c.G10662T p.R3554S AGACCACCTCTCA . 403 51 225 0 . 0 0 0 0 0 FLG 2312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 152280069 152280069 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FLG-106 NM_002016 exon3 c.C7293A p.T2431T GGTCCCGGTCCGT . 604 308 331 1 . 0 0 0 0 0 FLG 2312 bcgsc.ca 37 1 152281563 152281563 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FLG-106 NM_002016 exon3 c.G5799T p.R1933S AGACCACCTCTCA . 525 64 335 2 . 0 0 0 0 0 FLG 2312 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 152283067 152283067 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FLG-106 NM_002016 exon3 c.G4295T p.G1432V CTTTCCCCTGACT . 442 116 236 1 . 0 0 0 0 0 FLG2 388698 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 152323875 152323875 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FLG2-151 NM_001014342 exon3 c.C6387A p.A2129A AGATCTGGCTTGG . 516 218 341 1 . 0 0 0 0 0 FLG2 388698 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 152326364 152326364 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FLG2-151 NM_001014342 exon3 c.T3898A p.Y1300N TTGGGTAGTGAGA . 715 182 401 1 . 0 0 0 0 0 FLG2 388698 ucsc.edu;bcgsc.ca 37 1 152326656 152326656 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FLG2-151 NM_001014342 exon3 c.C3606A p.S1202S TCCAGTGGACTGA . 275 125 194 2 . 0 0 0 0 0 FLG2 388698 bcgsc.ca 37 1 152327047 152327047 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FLG2-151 NM_001014342 exon3 c.3215delG p.R1072fs GACTGACGTGATC . 533 197 322 1 . 0 0 0 0 0 FLG2 388698 hgsc.bcm.edu 37 1 152327047 152327048 + Frame_Shift_Del DEL CG CG - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CG CG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FLG2-151 NM_001014342 exon3 c.3214_3215del p.1072_1072del GACTGACGTGATC . 533 0 322 0 . 0 0 0 0 0 FLG2 388698 bcgsc.ca 37 1 152327048 152327048 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FLG2-151 NM_001014342 exon3 c.C3214A p.R1072S ACTGACGTGATCT . 529 210 318 2 . 0 0 0 0 0 FLG2 388698 broad.mit.edu;bcgsc.ca 37 1 152328724 152328724 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FLG2-151 NM_001014342 exon3 c.G1538A p.G513E GATTGTCCTGAGA . 423 41 273 1 . 0 0 0 0 0 FLG2 388698 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 152328752 152328752 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FLG2-151 NM_001014342 exon3 c.G1510T p.G504C CAAAGCCAGAGGA . 409 32 259 0 . 0 0 0 0 0 FLG2 388698 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 152329711 152329711 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FLG2-151 NM_001014342 exon3 c.C551T p.S184F CAGCTGGACCTGT . 190 43 146 0 . 0 0 0 0 0 SPRR2D 6703 broad.mit.edu;mdanderson.org 37 1 153012806 153012806 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPRR2D-68 NM_006945 exon2 c.A17T p.Q6L CACTGCTGCTGTT . 73 33 34 1 . 0 0 0 0 0 LOR 4014 hgsc.bcm.edu 37 1 153233804 153233804 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LOR-90 NM_000427 exon2 c.G379T p.G127C GGCTCCGGCTGCT . 8 5 0 0 . 0 0 0 0 0 PGLYRP4 57115 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 153303417 153303417 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PGLYRP4-94 NM_020393 exon9 c.A948G p.I316M GGGTGGTATACCT . 193 20 120 0 . 0 0 0 0 0 FAM189B 10712 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 155217919 155217919 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM189B-154 NM_006589 exon11 c.G1755T p.R585R CAGGCCCCGACCT . 273 141 158 1 . 0 0 0 0 0 MEX3A 92312 broad.mit.edu 37 1 156046986 156046986 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MEX3A-158 NM_001093725 exon2 c.T942A p.D314E GCGGCTATCGATT . 144 15 47 1 . 0 0 0 0 0 TMEM79 84283 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 156255405 156255405 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMEM79-90 NM_032323 exon2 c.G388T p.V130L GCCTTCGTGCCTA . 299 35 163 0 . 0 0 0 0 0 TSACC 128229 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 156316635 156316635 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_144627 exon4 c.C240T p.A80A GCTCGCCCAACAA . 315 89 175 0 . 0 0 0 0 0 SH2D2A 9047 ucsc.edu;bcgsc.ca 37 1 156779504 156779504 + Silent SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SH2D2A-90 NM_001161441 exon6 c.A693G p.K231K CCCCTGTTTGATG . 136 37 93 2 . 0 0 0 0 0 FCRL4 83417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 157559043 157559043 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FCRL4-229 NM_031282 exon3 c.G258A p.Q86Q CCGGGCCTGGCAT . 280 140 165 0 . 0 0 0 0 0 CD5L 922 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 157804410 157804410 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CD5L-91 NM_005894 exon4 c.C505A p.L169I CCCGGAGGCTCCA . 122 30 101 0 . 0 0 0 0 0 CD1E 913 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158325660 158325660 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CD1E-93 NM_001042585 exon4 c.T669A p.P223P TGGCCCTGGCCGT . 216 55 104 1 . 0 0 0 0 0 OR10T2 128360 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 158368349 158368349 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR10T2-70 NM_001004475 exon1 c.G908T p.R303I AGAACTCTTTTCA . 153 16 85 0 . 0 0 0 0 0 OR10T2 128360 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158369178 158369178 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR10T2-70 NM_001004475 exon1 c.C79A p.L27M AAAGCAGCAGCTG . 105 60 67 0 . 0 0 0 0 0 OR10K2 391107 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158390612 158390612 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR10K2-69 NM_001004476 exon1 c.C45G p.L15L GAAGCCGAGGAAG . 184 53 114 0 . 0 0 0 0 0 OR10K1 391109 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158435408 158435408 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR10K1-69 NM_001004473 exon1 c.C57G p.S19S CTCATCCCTGGCC . 282 75 197 0 . 0 0 0 0 0 OR10X1 128367 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158549327 158549327 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR10X1-69 NM_001004477 exon1 c.G363T p.L121F AAGTCCCAAGAAG . 638 81 411 2 . 0 0 0 0 0 SPTA1 6708 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158589090 158589090 + Missense_Mutation SNP C C A rs202169454 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPTA1-142 NM_003126 exon45 c.G6452T p.R2151I ACCTGTCTTGCCT . 414 43 300 0 C|0.999;T|0.001 0 0 0 0 0 SPTA1 6708 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158590083 158590083 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPTA1-142 NM_003126 exon44 c.C6294A p.D2098E TTTAAAGTCTGCT . 255 35 170 0 . 0 0 0 0 0 SPTA1 6708 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158592778 158592778 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPTA1-142 NM_003126 exon43 c.C6115G p.Q2039E CCTTCTGTAGAGG . 121 27 88 0 . 0 0 0 0 0 SPTA1 6708 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158606464 158606464 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPTA1-142 NM_003126 exon37 c.G5277T p.E1759D CTCCCCCTCTAGG . 112 29 87 0 . 0 0 0 0 0 SPTA1 6708 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158653268 158653268 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPTA1-142 NM_003126 exon3 c.C283A p.Q95K GGGATTGATGCTT . 155 60 112 0 . 0 0 0 0 0 OR6K2 81448 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158670301 158670301 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR6K2-69 NM_001005279 exon1 c.G142T p.V48L GGACCACTGTGAT . 243 75 168 0 . 0 0 0 0 0 OR6N1 128372 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 158735697 158735697 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR6N1-69 NM_001005185 exon1 c.A776G p.Y259C TGCACATACATGG . 368 178 213 1 . 0 0 0 0 0 OR6N2 81442 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158747067 158747067 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR6N2-68 NM_001005278 exon1 c.A359T p.Y120F CTATCATAGGCCA . 380 54 293 0 . 0 0 0 0 0 CADM3 57863 hgsc.bcm.edu 37 1 159141616 159141616 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CADM3-92 NM_021189 exon1 c.C61A p.P21T TGGGCGCCCGGCG . 72 11 12 0 . 0 0 0 0 0 DARC 2532 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 159175764 159175764 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DARC-659 NM_001122951 exon1 c.C541T p.L181L GCTGCCCTACTGA . 184 37 120 0 . 0 0 0 0 0 FCER1A 2205 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 159273889 159273889 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FCER1A-524 NM_002001 exon4 c.248delC p.A83fs TGAATGCCAAATT . 207 102 175 0 . 0 0 0 0 0 APCS 325 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 159558001 159558001 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . APCS-154 NM_001639 exon2 c.T175C p.Y59H CGAGCCTATAGTG . 87 16 41 0 . 0 0 0 0 0 FCRL6 343413 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 159779392 159779392 + Missense_Mutation SNP C C G rs146386650 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FCRL6-93 NM_001004310 exon5 c.C805G p.Q269E TCAGAACAGGATG . 220 58 140 0 C|1.000;T|0.000 0 0 0 0 0 SLAMF9 89886 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 159922196 159922196 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLAMF9-91 NM_033438 exon3 c.520delG p.D174fs TGCTATCCCCCCG . 203 46 106 0 . 0 0 0 0 0 IGSF8 93185 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 160063008 160063008 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IGSF8-90 NM_052868 exon4 c.G1018T p.A340S AGTATGCAGCATG . 318 37 184 1 . 0 0 0 0 0 ATP1A4 480 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 160124894 160124894 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ATP1A4-94 NM_144699 exon3 c.C267T p.T89T TGTTACCCCACCC . 175 23 88 1 . 0 0 0 0 0 ITLN2 142683 bcgsc.ca 37 1 160920966 160920966 + Missense_Mutation SNP C C T rs6680969 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ITLN2-91 NM_080878 exon4 c.G308A p.R103H TTCCCACGCATGT . 498 13 280 0 C|0.495;T|0.505 0 0 0 0 0 F11R 50848 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 160970019 160970019 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . F11R-92 NM_016946 exon5 c.G508T p.G170W CTATCCCATCTTT . 173 69 85 0 . 0 0 0 0 0 HSPA6 3310 ucsc.edu;bcgsc.ca 37 1 161496045 161496045 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HSPA6-226 NM_002155 exon1 c.G1597T p.A533S GATGAGGCCCAGA . 966 364 642 4 . 0 0 0 0 0 FCGR3A 2214 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 161519625 161519625 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FCGR3A-91 NM_001127592 exon1 c.G10T p.G4W CAGCCCCTCCACC . 302 171 192 0 . 0 0 0 0 0 OLFML2B 25903 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 161967901 161967901 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OLFML2B-69 NM_015441 exon6 c.A1188T p.Q396H GGTTGTTTGGAGT . 204 32 94 0 . 0 0 0 0 0 OLFML2B 25903 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 161987209 161987209 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OLFML2B-69 NM_015441 exon3 c.G527T p.R176L TCCACTCGCCCCA . 124 36 92 0 . 0 0 0 0 0 OLFML2B 25903 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 161989832 161989832 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OLFML2B-69 NM_015441 exon2 c.G315T p.V105V GGTTTCCACGGTA . 172 97 146 2 . 0 0 0 0 0 NOS1AP 9722 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 162313643 162313643 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NOS1AP-228 NM_014697 exon6 c.G472T p.V158F AGAATCGTTCGGA . 434 90 301 0 . 0 0 0 0 0 C1orf111 284680 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 162345173 162345173 + Missense_Mutation SNP G G C rs139605225 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C1orf111-69 NM_182581 exon2 c.C124G p.P42A CAGTGGGTACTGC . 374 28 204 0 G|0.999;T|0.000 0 0 0 0 0 HSD17B7 51478 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 162762484 162762484 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HSD17B7-91 NM_016371 exon2 c.C71T p.A24V TGCTGGCGGAAGA . 173 22 132 0 . 0 0 0 0 0 HSD17B7 51478 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 162766425 162766425 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HSD17B7-91 NM_016371 exon3 c.C290T p.P97L CTAATCCACAACT . 145 19 121 0 . 0 0 0 0 0 LMX1A 4009 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 165322434 165322434 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LMX1A-92 NM_001174069 exon3 c.C142T p.L48L GCCGCAGCAGAAA . 169 68 87 0 . 0 0 0 0 0 LRRC52 440699 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 165513609 165513609 + Missense_Mutation SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRRC52-91 NM_001005214 exon1 c.T76G p.C26G TCAAAGTGTCCAA . 299 91 191 3 . 0 0 0 0 0 FAM78B 149297 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 166039894 166039894 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM78B-91 NM_001017961 exon2 c.C370A p.L124M CAACCAGGGTCAC . 163 25 84 0 . 0 0 0 0 0 POGK 57645 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 166816741 166816741 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . POGK-91 NM_017542 exon4 c.C270A p.F90L CCCATTCCCTAAG . 147 18 95 0 . 0 0 0 0 0 ILDR2 387597 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 166891891 166891891 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ILDR2-91 NM_199351 exon8 c.G1150T p.A384S GGCTTGCCCCACT . 123 58 99 1 . 0 0 0 0 0 MAEL 84944 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 166962004 166962004 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MAEL-91 NM_032858 exon4 c.C407A p.P136H TCCTCCCTTGTGA . 41 5 25 0 . 0 0 0 0 0 DUSP27 92235 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 167086597 167086597 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DUSP27-71 NM_001080426 exon3 c.G238T p.E80X GACGCAGAGTGTC . 202 113 138 0 . 0 0 0 0 0 DUSP27 92235 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 167096341 167096341 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DUSP27-71 NM_001080426 exon5 c.C1973A p.P658H GCATTCCCCTGTC . 416 64 255 0 . 0 0 0 0 0 DUSP27 92235 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 167096491 167096491 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DUSP27-71 NM_001080426 exon5 c.C2123A p.P708H CCCTGCCTAACCT . 274 119 161 0 . 0 0 0 0 0 CD247 919 broad.mit.edu 37 1 167487681 167487681 + Missense_Mutation SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CD247-90 NM_198053 exon1 c.A22C p.T8P CCGCGGTGAAAAG . 92 9 49 1 . 0 0 0 0 0 RCSD1 92241 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 167659302 167659302 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RCSD1-517 NM_052862 exon4 c.C215A p.A72E CCAATGCGAGCCA . 256 31 157 0 . 0 0 0 0 0 XCL1 6375 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 168550362 168550362 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . XCL1-90 NM_002995 exon3 c.C249A p.S83R CAGGAGCATGGAC . 477 173 326 0 . 0 0 0 0 0 KIFAP3 22920 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 170015874 170015874 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIFAP3-91 NM_014970 exon3 c.C298T p.R100C AATCACGGCGGTT . 278 58 161 0 . 0 0 0 0 0 PRRX1 5396 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 170633519 170633519 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRRX1-659 NM_006902 exon1 c.G160C p.D54H CAGGCGGATGAGA . 616 72 177 0 . 0 0 0 0 0 TNN 63923 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 175046899 175046899 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TNN-138 NM_022093 exon2 c.G345T p.L115L GAAGCTGGAGGAA . 459 126 311 0 . 0 0 0 0 0 TNN 63923 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 175086185 175086185 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TNN-138 NM_022093 exon10 c.T2230A p.S744T TACACCTCTGCCA . 421 54 291 1 . 0 0 0 0 0 TNN 63923 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 175092664 175092664 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TNN-138 NM_022093 exon12 c.A2779T p.R927W GAGACCAGGGAGG . 444 100 309 0 . 0 0 0 0 0 TNN 63923 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 175116153 175116153 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TNN-138 NM_022093 exon19 c.G3846T p.E1282D CAGGGAGCCTGTC . 338 99 193 1 . 0 0 0 0 0 TNR 7143 ucsc.edu;bcgsc.ca 37 1 175348815 175348815 + Silent SNP G G T rs139768853 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TNR-324 NM_003285 exon9 c.C1836A p.L612L CCACTCGAGGTCA . 269 134 193 2 G|0.998;A|0.002 0 0 0 0 0 TNR 7143 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 175362928 175362928 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TNR-324 NM_003285 exon6 c.C1344A p.S448R AATGAAGCTGATT . 227 72 149 1 . 0 0 0 0 0 TNR 7143 ucsc.edu;bcgsc.ca 37 1 175372387 175372387 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TNR-324 NM_003285 exon4 c.G865T p.G289C CCTCACCAACGTA . 377 145 282 2 . 0 0 0 0 0 PAPPA2 60676 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 176526124 176526124 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PAPPA2-548 NM_020318 exon2 c.G666T p.W222C ACCTTGGCCCAAG . 215 62 146 0 . 0 0 0 0 0 PAPPA2 60676 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 176564188 176564188 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PAPPA2-548 NM_020318 exon3 c.G1448T p.G483V TCCAGGGCTTTGA . 196 80 126 1 . 0 0 0 0 0 PAPPA2 60676 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 176769205 176769205 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PAPPA2-548 NM_020318 exon21 c.G5139T p.V1713V CATTGTGTGCACT . 108 10 65 0 . 0 0 0 0 0 ASTN1 460 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 176845691 176845691 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ASTN1-319 NM_207108 exon21 c.G3445T p.D1149Y CATCATCCACCAC . 296 151 209 1 . 0 0 0 0 0 ASTN1 460 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 176863813 176863813 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ASTN1-319 NM_207108 exon17 c.C2825A p.S942Y GGGCAGGACGAGG . 137 40 92 0 . 0 0 0 0 0 TOR3A 64222 hgsc.bcm.edu 37 1 179051300 179051300 + Missense_Mutation SNP T T C rs2296377 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TOR3A-90 NM_022371 exon1 c.T37C p.F13L CTCTTTTTCCTGC . 15 15 0 0 T|0.229;C|0.771 0 0 0 0 0 TDRD5 163589 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 179620086 179620086 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TDRD5-94 NM_001199091 exon12 c.G1885A p.D629N TATGTAGATGGAA . 340 91 165 0 . 0 0 0 0 0 LHX4 89884 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 180240552 180240552 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LHX4-91 NM_033343 exon4 c.C489A p.T163T GACCACCATCACA . 554 134 345 2 . 0 0 0 0 0 CACNA1E 777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 181702776 181702776 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CACNA1E-95 NM_000721 exon21 c.C3152A p.P1051H GCGAGCCTGACCT . 973 256 531 1 . 0 0 0 0 0 CACNA1E 777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 181767816 181767816 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CACNA1E-95 NM_001205293 exon48 c.C6788A p.S2263Y GCCGTTCCAACAC . 217 21 117 0 . 0 0 0 0 0 CACNA1E 777 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 181767817 181767817 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CACNA1E-95 NM_001205293 exon48 c.C6789A p.S2263S CCGTTCCAACACC . 217 21 114 0 . 0 0 0 0 0 ZNF648 127665 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 182027141 182027141 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF648-91 NM_001009992 exon2 c.C5A p.A2E ACTTGTGCCATGA . 280 100 164 1 . 0 0 0 0 0 RGSL1 353299 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 182500036 182500036 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RGSL1-226 NM_001137669 exon13 c.2355delG p.Q785fs CCTACAGGAATCC . 97 45 53 0 . 0 0 0 0 0 RGSL1 353299 hgsc.bcm.edu 37 1 182500036 182500037 + Frame_Shift_Del DEL GG GG - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 GG GG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RGSL1-226 NM_001137669 exon13 c.2355_2356del p.785_786del CCTACAGGAATCC . 97 0 53 0 . 0 0 0 0 0 RGSL1 353299 bcgsc.ca 37 1 182500037 182500037 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RGSL1-226 NM_001137669 exon13 c.G2356A p.E786K CTACAGGAATCCC . 95 45 51 0 . 0 0 0 0 0 LAMC2 3918 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 183195953 183195953 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LAMC2-93 NM_005562 exon9 c.G1187T p.C396F AGGATTGTGCTTC . 217 17 163 0 . 0 0 0 0 0 COLGALT2 23127 bcgsc.ca 37 1 183923927 183923927 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_015101 exon7 c.C998A p.P333H TATTTAGGGACAA . 805 191 503 5 . 0 0 0 0 0 TRMT1L 81627 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 185112534 185112534 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRMT1L-92 NM_030934 exon7 c.G814A p.E272K GTTCCTCAGCCAA . 296 42 198 2 . 0 0 0 0 0 PLA2G4A 5321 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 186880385 186880385 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLA2G4A-721 NM_024420 exon7 c.G422T p.C141F GCTCATGCCCAGA . 186 63 116 0 . 0 0 0 0 0 FAM5C 339479 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 190067548 190067548 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM5C-228 NM_199051 exon8 c.1901delA p.K634fs TTGGACTTGATGC . 161 87 134 0 . 0 0 0 0 0 FAM5C 339479 hgsc.bcm.edu 37 1 190067549 190067550 + Frame_Shift_Del DEL TG TG - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 TG TG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM5C-228 NM_199051 exon8 c.1899_1900del p.633_634del TGGACTTGATGCG . 158 0 131 0 . 0 0 0 0 0 FAM5C 339479 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 1 190067550 190067550 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM5C-228 NM_199051 exon8 c.C1899T p.I633I GGACTTGATGCGA . 155 88 130 0 . 0 0 0 0 0 RGS18 64407 bcgsc.ca 37 1 192127869 192127869 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RGS18-229 NM_130782 exon1 c.C102A p.S34R AACAAGCAAAGAA . 271 105 234 4 . 0 0 0 0 0 RGS18 64407 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 192127877 192127877 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RGS18-229 NM_130782 exon1 c.C110A p.A37D AAGAAGCCAAAAT . 259 60 230 0 . 0 0 0 0 0 RGS18 64407 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 192153625 192153625 + Missense_Mutation SNP C C A rs200020460 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RGS18-229 NM_130782 exon5 c.C649A p.R217S CGATCACGCTCAT . 250 90 243 1 C|0.999;T|0.001 0 0 0 0 0 RGS1 5996 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 192548286 192548286 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RGS1-226 NM_002922 exon5 c.C464A p.T155N TCCGCACTCGAGA . 238 59 201 0 . 0 0 0 0 0 CFHR3 10878 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 196749007 196749007 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CFHR3-90 NM_021023 exon3 c.G334C p.V112L ACAGAAGTTGCCT . 618 300 414 0 . 0 0 0 0 0 CFHR2 3080 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 196920020 196920020 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CFHR2-93 NM_005666 exon3 c.G292C p.E98Q CATTCTGAATCTT . 204 17 155 0 . 0 0 0 0 0 CFHR5 81494 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 196964954 196964954 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CFHR5-154 NM_030787 exon5 c.C715G p.P239A TGCAATCCTAATT . 289 142 200 0 . 0 0 0 0 0 ASPM 259266 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 197059995 197059995 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ASPM-615 NM_018136 exon23 c.A9621T p.G3207G AATGATTCCACTA . 62 23 45 0 . 0 0 0 0 0 ASPM 259266 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 197113117 197113117 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ASPM-615 NM_001206846 exon2 c.A411T p.L137L ATTTCCTAGTAAT . 127 44 114 0 . 0 0 0 0 0 KIF21B 23046 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 200943940 200943940 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIF21B-96 NM_001252102 exon34 c.G4716T p.W1572C CACGTTCCAGACC . 379 94 186 0 . 0 0 0 0 0 KIF21B 23046 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 200971454 200971454 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIF21B-96 NM_017596 exon9 c.G1237T p.G413C CAGCGCCATCCTC . 193 53 132 0 . 0 0 0 0 0 CACNA1S 779 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 201047167 201047167 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CACNA1S-94 NM_000069 exon11 c.G1459T p.G487C GCAGGCCCAGCCC . 625 338 369 0 . 0 0 0 0 0 IGFN1 91156 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 201181975 201181975 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IGFN1-71 NM_001164586 exon12 c.G7954T p.G2652C GCTTCCGGTTCTC . 242 137 148 1 . 0 0 0 0 0 KDM5B 10765 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 202715062 202715062 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KDM5B-273 NM_006618 exon16 c.G2247T p.K749N TCGAAGCTTCAAT . 120 33 84 1 . 0 0 0 0 0 ADIPOR1 51094 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 202915739 202915739 + Splice_Site SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADIPOR1-90 NM_015999 exon5 c.259-1G>T . CCAGACCTAGAAC . 367 68 217 1 . 0 0 0 0 0 PPFIA4 8497 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 203028334 203028334 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PPFIA4-230 NM_015053 exon7 c.G918T p.M306I CAGTATGCAGGAG . 811 294 468 0 . 0 0 0 0 0 BTG2 7832 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 203276418 203276418 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BTG2-651 NM_006763 exon2 c.C329T p.S110F AGGTGTCCTACCG . 140 39 104 0 . 0 0 0 0 0 PRELP 5549 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 203452438 203452438 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRELP-516 NM_201348 exon2 c.C126A p.P42P CAGGCCCACACCC . 245 107 140 1 . 0 0 0 0 0 PRELP 5549 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 203452762 203452762 + Silent SNP C C T rs200569548 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRELP-516 NM_201348 exon2 c.C450T p.P150P ACTGCCCGGCCTG . 316 106 202 0 C|0.999;T|0.000 0 0 0 0 0 LAX1 54900 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 203743202 203743202 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LAX1-514 NM_017773 exon5 c.C590A p.P197H ATGTCCCCACAGC . 196 66 99 0 . 0 0 0 0 0 ZC3H11A 9877 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 203807096 203807096 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZC3H11A-515 NM_014827 exon13 c.G877T p.G293C ATAGGCGGTGACA . 246 115 190 0 . 0 0 0 0 0 NFASC 23114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 204937426 204937426 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NFASC-139 NM_001160332 exon9 c.C789A p.T263T GGGCACCGCGAGC . 226 98 136 0 . 0 0 0 0 0 NFASC 23114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 204966446 204966446 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NFASC-139 NM_001005388 exon25 c.C2931A p.V977V CACCGTCGCCACA . 477 166 338 1 . 0 0 0 0 0 CNTN2 6900 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 205039030 205039030 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CNTN2-91 NM_005076 exon18 c.T2272A p.W758R ACTCACTGGCAGA . 549 66 258 2 . 0 0 0 0 0 RASSF5 83593 hgsc.bcm.edu 37 1 206681002 206681002 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RASSF5-660 NM_182663 exon1 c.C67T p.R23C CCGCCGCGCTATC . 88 15 2 0 . 0 0 0 0 0 FAIM3 9214 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 207087142 207087142 + Missense_Mutation SNP C C A rs200225589 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAIM3-90 NM_001193338 exon2 c.G335T p.R112L TTTCCCCGGTCTG . 212 80 116 1 C|0.999;T|0.000 0 0 0 0 0 FCAMR 83953 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 207139094 207139094 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FCAMR-91 NM_032029 exon4 c.G279T p.S93S GAGGGGCGAGGAA . 235 85 168 0 . 0 0 0 0 0 CR2 1380 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 207649601 207649601 + Silent SNP G G A rs184057547 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CR2-232 NM_001006658 exon15 c.G2739A p.P913P ACCTCCGCCTAAG . 274 43 177 1 G|0.999;A|0.000 0 0 0 0 0 CR1 1378 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 207753724 207753724 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CR1-93 NM_000651 exon30 c.C5076A p.P1692P CACACCCCAGGGA . 285 72 160 1 . 0 0 0 0 0 PLXNA2 5362 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 208202235 208202235 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLXNA2-92 NM_025179 exon30 c.C5378G p.S1793C GAGGGGGAGTCCT . 333 43 197 0 . 0 0 0 0 0 LAMB3 3914 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 209795997 209795997 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LAMB3-156 NM_000228 exon18 c.A2585G p.Q862R TGAATCTGTGAGG . 200 60 134 0 . 0 0 0 0 0 LAMB3 3914 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 209796407 209796407 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LAMB3-156 NM_000228 exon17 c.G2476T p.G826C CCCCACCGGCCCT . 425 208 280 1 . 0 0 0 0 0 TRAF3IP3 80342 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 209936416 209936416 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRAF3IP3-291 NM_025228 exon6 c.C555A p.Y185X CAGTTACGGAGTT . 141 54 101 0 . 0 0 0 0 0 TRAF3IP3 80342 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 209936707 209936707 + Splice_Site SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRAF3IP3-291 NM_025228 exon7 c.577-1G>A . TCTCCAGGAAATC . 226 67 147 1 . 0 0 0 0 0 IRF6 3664 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 209964145 209964145 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IRF6-92 NM_006147 exon7 c.T755C p.F252S CCATAGAAGAGTC . 161 46 88 0 . 0 0 0 0 0 KCNH1 3756 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 210857441 210857441 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KCNH1-94 NM_172362 exon11 c.G2152C p.E718Q GTTCTTCCTCTTC . 55 9 31 0 . 0 0 0 0 0 KCNH1 3756 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 210971060 210971060 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KCNH1-94 NM_172362 exon9 c.G1705T p.V569L GGTGCACGCAGAT . 400 207 233 0 . 0 0 0 0 0 KCNH1 3756 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 211264025 211264025 + Silent SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KCNH1-94 NM_002238 exon4 c.T318A p.P106P CCACACAGGTGTC . 83 47 43 0 . 0 0 0 0 0 INTS7 25896 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 212141280 212141280 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . INTS7-90 NM_001199812 exon15 c.A2054G p.Y685C TCTCCATATCGAG . 60 24 23 0 . 0 0 0 0 0 INTS7 25896 broad.mit.edu;bcgsc.ca 37 1 212190255 212190255 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . INTS7-90 NM_001199812 exon4 c.C482G p.A161G GCAGCAGCAAAAA . 209 19 130 1 . 0 0 0 0 0 KCNK2 3776 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 215408289 215408289 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KCNK2-90 NM_001017425 exon7 c.T1082A p.I361N CCTCCATCAAGCG . 112 50 91 0 . 0 0 0 0 0 USH2A 7399 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 215822060 215822060 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . USH2A-115 NM_206933 exon66 c.T14392C p.F4798L TAGTGAAGGCTTG . 249 128 141 0 . 0 0 0 0 0 USH2A 7399 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 215953376 215953376 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . USH2A-115 NM_206933 exon55 c.C10748A p.A3583E GTAGCTGCAACTA . 168 22 121 0 . 0 0 0 0 0 USH2A 7399 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 215963428 215963428 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . USH2A-115 NM_206933 exon51 c.C10155A p.D3385E AATCTTGTCAGAG . 85 20 60 0 . 0 0 0 0 0 USH2A 7399 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 216052284 216052284 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . USH2A-115 NM_206933 exon42 c.G8380T p.V2794F AAGCAACAATGGT . 329 166 209 0 . 0 0 0 0 0 USH2A 7399 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 216144042 216144042 + Nonsense_Mutation SNP G G T rs147615382 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . USH2A-115 NM_206933 exon36 c.C6882A p.Y2294X AAATCCGTAAGCA . 225 32 138 1 G|1.000;A|0.000 0 0 0 0 0 USH2A 7399 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 216390770 216390770 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . USH2A-115 NM_206933 exon15 c.C3116A p.A1039E TGGCTTGCACTGG . 268 82 220 1 . 0 0 0 0 0 USH2A 7399 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 216498841 216498841 + Silent SNP G G T rs111033272 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . USH2A-115 NM_206933 exon6 c.C949A p.R317R AGTACCGCTGTGC . 175 76 113 0 . 0 0 0 0 0 TGFB2 7042 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 218607682 218607682 + Silent SNP A A C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TGFB2-710 NM_001135599 exon5 c.A730C p.R244R CCAGACAGGAACC . 161 22 98 0 . 0 0 0 0 0 EPRS 2058 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 220152840 220152840 + Missense_Mutation SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EPRS-92 NM_004446 exon27 c.A3829C p.T1277P TTCGAGTTGTCAG . 192 108 105 0 . 0 0 0 0 0 EPRS 2058 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 220178699 220178699 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EPRS-92 NM_004446 exon16 c.G1954T p.E652X GCTCTTCATGCTG . 49 20 21 0 . 0 0 0 0 0 BPNT1 10380 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 220247364 220247364 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BPNT1-91 NM_006085 exon3 c.G170A p.S57N CATATGCTCATCT . 159 34 95 0 . 0 0 0 0 0 HHIPL2 79802 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 222705308 222705308 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HHIPL2-69 NM_024746 exon6 c.G1723A p.G575R TGTTACCTGCTTC . 145 49 77 0 . 0 0 0 0 0 DNAH14 127602 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 225267153 225267153 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DNAH14-23 NM_001373 exon18 c.G2669T p.S890I AGTTAAGTAAAAT . 256 38 220 0 . 0 0 0 0 0 CDC42BPA 8476 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 227261686 227261686 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CDC42BPA-549 NM_003607 exon19 c.G2614C p.A872P GTTTCGCAAAACG . 56 17 48 0 . 0 0 0 0 0 PRSS38 339501 bcgsc.ca 37 1 228004947 228004947 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRSS38-92 NM_183062 exon3 c.C349A p.L117I GTAGGCCTCGTAA . 173 101 78 2 . 0 0 0 0 0 PRSS38 339501 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 228005027 228005027 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRSS38-92 NM_183062 exon3 c.G429C p.M143I TGAGATGTACCAC . 221 53 129 0 . 0 0 0 0 0 OBSCN 84033 broad.mit.edu;bcgsc.ca 37 1 228465520 228465520 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OBSCN-403 NM_001271223 exon30 c.G8107A p.A2703T TTTGTAGCCGAAA . 533 116 323 2 . 0 0 0 0 0 OBSCN 84033 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 1 228469788 228469788 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OBSCN-403 NM_001271223 exon36 c.G9639T p.Q3213H CTTCCAGGCCACA . 543 322 368 2 . 0 0 0 0 0 OBSCN 84033 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 228496916 228496916 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OBSCN-403 NM_001271223 exon59 c.G15727T p.G5243X GCTTTAGGAGGGG . 365 98 232 1 . 0 0 0 0 0 OBSCN 84033 bcgsc.ca 37 1 228506745 228506745 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OBSCN-403 NM_001271223 exon65 c.G17163T p.E5721D AGAGGAGGACGGC . 447 237 220 4 . 0 0 0 0 0 PGBD5 79605 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 230468646 230468646 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PGBD5-93 NM_001258311 exon5 c.G1217A p.W406X TTGTACCAGCAGA . 358 177 180 0 . 0 0 0 0 0 TRIM67 440730 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 231349591 231349591 + Silent SNP C C A rs200465476 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRIM67-229 NM_001004342 exon9 c.C2154A p.T718T GGCCACCGTGGGC . 666 345 383 0 C|0.998;T|0.002 0 0 0 0 0 DISC1 27185 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 231885794 231885794 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DISC1-91 NM_001164537 exon5 c.G1336C p.A446P GTCCAGGCTGCCT . 276 74 158 0 . 0 0 0 0 0 ARID4B 51742 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 235357437 235357437 + Silent SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARID4B-228 NM_016374 exon19 c.A2016C p.T672T TGGATTTGTCTGA . 107 54 69 0 . 0 0 0 0 0 LYST 1130 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 235904873 235904873 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LYST-143 NM_000081 exon31 c.G8207C p.C2736S TCCTTACAAGACC . 189 42 128 0 . 0 0 0 0 0 LYST 1130 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 235966313 235966313 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LYST-143 NM_000081 exon8 c.G3607C p.E1203Q CAGCTTCTTCTGA . 69 8 45 0 . 0 0 0 0 0 LYST 1130 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 235972428 235972428 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LYST-143 NM_000081 exon5 c.G1690T p.A564S AGGAAGCCTGCTG . 238 124 135 0 . 0 0 0 0 0 LYST 1130 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 235973763 235973763 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LYST-143 NM_000081 exon5 c.C355G p.Q119E TTTCCTGAGTGGA . 50 15 32 0 . 0 0 0 0 0 NID1 4811 broad.mit.edu;bcgsc.ca 37 1 236157101 236157101 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NID1-154 NM_002508 exon13 c.C2599G p.R867G TGGGTCGCTGTGG . 325 149 96 3 . 0 0 0 0 0 ACTN2 88 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 236902766 236902766 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ACTN2-95 NM_001103 exon10 c.G1041C p.T347T CAACACGCTGCAG . 274 139 170 1 . 0 0 0 0 0 ACTN2 88 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 236902815 236902815 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ACTN2-95 NM_001103 exon10 c.G1090C p.E364Q CCCTCCGAGGGCA . 193 54 128 0 . 0 0 0 0 0 RYR2 6262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 237664056 237664056 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RYR2-158 NM_001035 exon21 c.G2249T p.R750I TGTTAAGAACTGA . 237 59 161 0 . 0 0 0 0 0 RYR2 6262 ucsc.edu;bcgsc.ca 37 1 237666655 237666655 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RYR2-158 NM_001035 exon22 c.T2463A p.P821P TGCTCCTTGTTAT . 188 100 119 2 . 0 0 0 0 0 RYR2 6262 ucsc.edu;bcgsc.ca 37 1 237801682 237801682 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RYR2-158 NM_001035 exon45 c.G6818T p.G2273V GTTGTGGACTGCA . 270 81 166 3 . 0 0 0 0 0 RYR2 6262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 237811775 237811775 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RYR2-158 NM_001035 exon49 c.G7374T p.A2458A GTCTGCGGGGTTT . 269 33 179 0 . 0 0 0 0 0 RYR2 6262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 237870480 237870480 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RYR2-158 NM_001035 exon68 c.A9812T p.E3271V ACTCAGAGCACAT . 271 72 173 0 . 0 0 0 0 0 RYR2 6262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 237890397 237890397 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RYR2-158 NM_001035 exon76 c.C10736G p.P3579R AACATCCTCAGAG . 119 51 74 0 . 0 0 0 0 0 RYR2 6262 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 237947789 237947789 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RYR2-158 NM_001035 exon90 c.C12777T p.L4259L AATGCTCAGTCTG . 157 42 128 1 . 0 0 0 0 0 RYR2 6262 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 237947964 237947964 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RYR2-158 NM_001035 exon90 c.C12952A p.L4318I GGAAGCCTCGTCG . 182 93 104 0 . 0 0 0 0 0 ZP4 57829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 238048794 238048794 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZP4-93 NM_021186 exon8 c.C1057G p.L353V TGTGAAGGATGGA . 387 57 262 0 . 0 0 0 0 0 ZP4 57829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 238049161 238049161 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZP4-93 NM_021186 exon7 c.G865T p.V289L TACTTACTGAGTA . 182 29 134 0 . 0 0 0 0 0 FMN2 56776 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 240371788 240371788 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FMN2-145 NM_020066 exon5 c.C3676A p.P1226T CCACTCCCTCCAC . 214 71 142 0 . 0 0 0 0 0 KMO 8564 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 241725612 241725612 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KMO-92 NM_003679 exon7 c.A595T p.I199F TTGACTATTCCAC . 422 155 229 1 . 0 0 0 0 0 WDR64 128025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 241846794 241846794 + Silent SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WDR64-91 NM_144625 exon6 c.T600C p.N200N GGAAAATTATTTT . 98 21 82 0 . 0 0 0 0 0 CEP170 9859 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 243349332 243349332 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CEP170-93 NM_014812 exon10 c.G1315T p.G439W ATTTCCCATGTGG . 305 116 218 0 . 0 0 0 0 0 CEP170 9859 broad.mit.edu;bcgsc.ca 37 1 243354352 243354352 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CEP170-93 NM_001042405 exon8 c.G1076T p.S359I ACATCACTTTTAA . 228 53 202 1 . 0 0 0 0 0 KIF26B 55083 ucsc.edu;bcgsc.ca 37 1 245583020 245583020 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIF26B-25 NM_018012 exon4 c.C1139T p.T380I CAGGCACATCGGT . 496 119 282 3 . 0 0 0 0 0 KIF26B 55083 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 245766029 245766029 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIF26B-25 NM_018012 exon6 c.C1501G p.Q501E GGCAACCAGGTTC . 315 29 164 0 . 0 0 0 0 0 KIF26B 55083 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 1 245849362 245849362 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIF26B-25 NM_018012 exon12 c.C3077A p.P1026Q GCGTCCCGGGCAG . 181 77 12 0 . 0 0 0 0 0 KIF26B 55083 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 245849536 245849536 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIF26B-25 NM_018012 exon12 c.C3251A p.S1084Y CCAGCTCTCCTTC . 366 208 171 1 . 0 0 0 0 0 OR2C3 81472 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 247694914 247694914 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2C3-70 NM_198074 exon2 c.C900G p.S300R GAGGGCGCTCTTC . 274 83 121 0 . 0 0 0 0 0 OR2G3 81469 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 247769018 247769018 + Missense_Mutation SNP C C A rs200831993 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2G3-68 NM_001001914 exon1 c.C131A p.T44N ACTTCACCATAAT . 208 54 123 2 C|0.999;A|0.001 0 0 0 0 0 OR2G3 81469 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 247769252 247769252 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2G3-68 NM_001001914 exon1 c.G365A p.R122Q TGGATCGGTACAT . 379 47 222 1 . 0 0 0 0 0 OR11L1 391189 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 248004443 248004443 + Nonsense_Mutation SNP G G T rs201677584 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR11L1-71 NM_001001959 exon1 c.C756A p.Y252X GGTCCCGTAGTAG . 332 132 188 0 G|0.999;A|0.000 0 0 0 0 0 TRIM58 25893 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 248039228 248039228 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRIM58-96 NM_015431 exon6 c.G898T p.A300S GCCACGGCGCACC . 127 12 59 0 . 0 0 0 0 0 OR2L8 391190 broad.mit.edu;bcgsc.ca 37 1 248112694 248112694 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2L8-70 NM_001001963 exon1 c.G535T p.D179Y TTCTGTGATGTCC . 209 48 112 2 . 0 0 0 0 0 OR2L8 391190 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 248113085 248113085 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2L8-70 NM_001001963 exon1 c.C926A p.S309Y TCTGCTCTGTGAA . 41 24 29 0 . 0 0 0 0 0 OR2L5 81466 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 1 248185406 248185406 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001258284 exon1 c.C157G p.H53D GACACCCATCTCC . 251 84 180 0 . 0 0 0 0 0 OR2L2 26246 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 248201688 248201688 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2L2-70 NM_001004686 exon1 c.G119T p.G40V TAATTGGAAATCT . 259 34 187 0 . 0 0 0 0 0 OR2L3 391192 broad.mit.edu 37 1 248224518 248224518 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2L3-68 NM_001004687 exon1 c.G535T p.D179Y TTCTGTGATGTCC . 531 37 264 2 . 0 0 0 0 0 OR2L13 284521 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 248263017 248263017 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2L13-70 NM_175911 exon3 c.C340A p.L114M TTACTCCTGACCT . 174 29 91 0 . 0 0 0 0 0 OR2L13 284521 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 248263390 248263390 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2L13-70 NM_175911 exon3 c.713delC p.T238fs CCTTCACCACCAT . 154 83 98 0 . 0 0 0 0 0 OR2L13 284521 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 248263394 248263394 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2L13-70 NM_175911 exon3 c.C717G p.T239T CACCACCATTTCA . 157 38 95 0 . 0 0 0 0 0 OR2M5 127059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 248308676 248308676 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2M5-71 NM_001004690 exon1 c.C227A p.S76Y TCTGCTCTACCGT . 463 57 285 0 . 0 0 0 0 0 OR2M2 391194 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 248343672 248343672 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2M2-72 NM_001004688 exon1 c.C385G p.P129A TGCCACCCTCTAA . 233 46 174 1 . 0 0 0 0 0 OR2M3 127062 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 248366445 248366445 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2M3-70 NM_001004689 exon1 c.T76A p.F26I CACACCTTCCTCT . 615 160 362 1 . 0 0 0 0 0 OR2M3 127062 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 248366542 248366542 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2M3-70 NM_001004689 exon1 c.C173G p.P58R ACACCCCCATGTA . 494 146 296 1 . 0 0 0 0 0 OR2M4 26245 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 248402254 248402254 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2M4-113 NM_017504 exon1 c.C24T p.F8F GACCTTCAACTCC . 305 153 167 0 . 0 0 0 0 0 OR2T12 127064 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 248458292 248458292 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2T12-71 NM_001004692 exon1 c.A589T p.M197L TGTACATGGCGTT . 1588 190 807 0 . 0 0 0 0 0 OR14C36 127066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 248512583 248512583 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR14C36-48 NM_001001918 exon1 c.C507A p.S169S TCGGTCCAACGTT . 119 57 85 0 . 0 0 0 0 0 OR2T4 127074 ucsc.edu;bcgsc.ca 37 1 248525752 248525752 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2T4-68 NM_001004696 exon1 c.C870A p.T290T CTACACCTACATG . 1467 580 914 3 . 0 0 0 0 0 OR2T6 254879 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 248551108 248551108 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2T6-71 NM_001005471 exon1 c.T199A p.S67T CACCTCTCCGTCA . 345 186 219 0 . 0 0 0 0 0 OR2T6 254879 ucsc.edu;bcgsc.ca 37 1 248551631 248551631 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2T6-71 NM_001005471 exon1 c.G722T p.C241F CCACCTGCTCTTC . 324 81 207 2 . 0 0 0 0 0 OR2T1 26696 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 248569879 248569879 + Missense_Mutation SNP T T C rs138350213 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2T1-69 NM_030904 exon1 c.T584C p.I195T TGATTATAGCAGG . 248 107 139 0 T|0.999;C|0.001 0 0 0 0 0 OR2T2 401992 broad.mit.edu;bcgsc.ca 37 1 248616364 248616364 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2T2-23 NM_001004136 exon1 c.A266T p.K89M TGTCCAAGGACAA . 2474 164 1715 2 . 0 0 0 0 0 OR2T10 127069 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 248756309 248756309 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2T10-69 NM_001004693 exon1 c.C761T p.A254V ATAGCAGCTCCAT . 256 39 202 0 . 0 0 0 0 0 OR2T10 127069 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 248756494 248756494 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2T10-69 NM_001004693 exon1 c.C576A p.T192T AAGTGAGGTGTCT . 392 246 343 1 . 0 0 0 0 0 OR2T10 127069 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 248756527 248756527 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2T10-69 NM_001004693 exon1 c.C543A p.V181V AGCAGGGACCTCA . 441 74 375 0 . 0 0 0 0 0 OR2T10 127069 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 248756878 248756878 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2T10-69 NM_001004693 exon1 c.C192A p.N64K GAGCTGGTTTATA . 281 153 266 1 . 0 0 0 0 0 OR2T11 127077 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 248790268 248790268 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2T11-69 NM_001001964 exon1 c.C162A p.T54T CATGGGGGTGTGG . 240 115 158 1 . 0 0 0 0 0 OR2T11 127077 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 248790331 248790331 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2T11-69 NM_001001964 exon1 c.G99T p.L33F GGCCCCCAAGAAA . 196 27 135 0 . 0 0 0 0 0 AKR1C4 1109 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 5254964 5254964 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AKR1C4-91 NM_001818 exon7 c.C688A p.P230T GTGGACCCAAACT . 224 81 169 0 . 0 0 0 0 0 PRKCQ 5588 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 6521128 6521128 + Splice_Site SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRKCQ-1380 NM_006257 exon13 c.1180-1G>T . GAAGACCTAGAAG . 138 45 114 0 . 0 0 0 0 0 ITIH5 80760 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 7621911 7621911 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ITIH5-92 NM_001001851 exon9 c.C1225G p.P409A CCGTGGGCTTCCC . 139 50 83 1 . 0 0 0 0 0 ITIH5 80760 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 7659227 7659227 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ITIH5-92 NM_001001851 exon6 c.671delC p.P224fs GTAGATGGGGGAG . 50 22 56 0 . 0 0 0 0 0 ITIH2 3698 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 7763735 7763735 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ITIH2-93 NM_002216 exon8 c.C862A p.L288M GGTGAACTGGAGG . 219 76 191 0 . 0 0 0 0 0 ATP5C1 509 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 7841035 7841035 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ATP5C1-90 NM_005174 exon4 c.G306C p.L102L AGGACTGTGTGGT . 306 85 306 0 . 0 0 0 0 0 UPF2 26019 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 12046670 12046670 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . UPF2-515 NM_080599 exon5 c.G1363T p.E455X CACCTTCCAAGTC . 75 35 68 1 . 0 0 0 0 0 UCMA 221044 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 13275734 13275734 + Splice_Site SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . UCMA-90 NM_145314 exon3 c.124+1G>T . CACTCACCTTCAC . 84 30 67 0 . 0 0 0 0 0 CUBN 8029 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 16949626 16949626 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CUBN-166 NM_001081 exon49 c.G7586A p.S2529N TTCACACTACTAC . 190 71 163 0 . 0 0 0 0 0 CUBN 8029 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 16970184 16970184 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CUBN-166 NM_001081 exon41 c.G6243C p.R2081S GCCTGCCCTGGTT . 59 32 65 0 . 0 0 0 0 0 VIM 7431 broad.mit.edu;bcgsc.ca 37 10 17275787 17275787 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . VIM-291 NM_003380 exon5 c.G739C p.A247P CTGCAGGCTCAGA . 223 82 201 3 . 0 0 0 0 0 PTPLA 9200 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 17636354 17636354 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PTPLA-226 NM_014241 exon6 c.G634A p.V212I CTCCAACAGGATA . 66 21 66 1 . 0 0 0 0 0 MRC1 4360 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 18138668 18138668 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MRC1-68 NM_002438 exon7 c.C1224G p.D408E ATTGGACTTTATT . 311 235 306 1 . 0 0 0 0 0 SLC39A12 221074 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 18254445 18254445 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC39A12-154 NM_152725 exon4 c.G577T p.G193X AAATCTGGAATAG . 49 12 62 0 . 0 0 0 0 0 MSRB2 22921 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 23408289 23408289 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MSRB2-90 NM_012228 exon4 c.G353A p.G118D CTCATGGTACGTC . 153 54 116 0 . 0 0 0 0 0 GPR158 57512 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 25701255 25701255 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR158-141 NM_020752 exon4 c.G1188T p.R396S TTGCAGGGAGGGC . 242 86 206 0 . 0 0 0 0 0 GPR158 57512 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 25839904 25839904 + Splice_Site SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR158-141 NM_020752 exon6 c.1405-1G>T . CCCACAGGTTGTT . 160 52 118 0 . 0 0 0 0 0 GPR158 57512 ucsc.edu;bcgsc.ca;mdanderson.org 37 10 25861668 25861668 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR158-141 NM_020752 exon7 c.G1605A p.L535L ACTCTTGGTAGTG . 233 71 203 2 . 0 0 0 0 0 GPR158 57512 ucsc.edu;bcgsc.ca 37 10 25861669 25861669 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR158-141 NM_020752 exon7 c.G1606T p.V536L CTCTTGGTAGTGT . 234 72 203 2 . 0 0 0 0 0 GPR158 57512 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 25885596 25885596 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR158-141 NM_020752 exon10 c.C2023G p.R675G AACCCACGAGATG . 125 41 141 0 . 0 0 0 0 0 GPR158 57512 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 25887095 25887095 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR158-141 NM_020752 exon11 c.C2540A p.S847Y AAAATTCCACACT . 152 47 169 1 . 0 0 0 0 0 MYO3A 53904 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 26459432 26459432 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYO3A-1007 NM_017433 exon29 c.A3362T p.Q1121L CTGATCAGGAATT . 250 64 273 0 . 0 0 0 0 0 ZEB1 6935 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 31750115 31750115 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZEB1-518 NM_001174093 exon2 c.G208T p.G70W TTACCAGGGAGGA . 279 103 240 0 . 0 0 0 0 0 ANKRD30A 91074 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 37422904 37422904 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ANKRD30A-161 NM_052997 exon5 c.G510T p.Q170H TCTTCAGCAAAAT . 152 66 157 0 . 0 0 0 0 0 ANKRD30A 91074 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 37508068 37508068 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ANKRD30A-161 NM_052997 exon34 c.A3260G p.N1087S AAAAGAATGCTGA . 252 49 240 0 . 0 0 0 0 0 ZNF33A 7581 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 38305844 38305844 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF33A-93 NM_006954 exon3 c.G55T p.V19L GTGACTGTGGGCT . 319 107 286 1 . 0 0 0 0 0 RET 5979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 43609034 43609034 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RET-4507 NM_020630 exon10 c.G1790T p.G597V AGCCTGGGGAGCC . 33 14 21 0 . 0 0 0 0 0 RASGEF1A 221002 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 43692433 43692433 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RASGEF1A-227 NM_145313 exon11 c.A1339T p.S447C CCTCGCTGTAGAT . 150 62 154 0 . 0 0 0 0 0 PPYR1 5540 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 47087507 47087507 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PPYR1-524 NM_005972 exon3 c.C724A p.Q242K CGCCTGCAGAGGC . 131 28 121 0 . 0 0 0 0 0 ARHGAP22 58504 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 49658873 49658873 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARHGAP22-228 NM_001256024 exon9 c.G1347C p.R449R CGGCTGCCGGAAG . 186 68 106 0 . 0 0 0 0 0 WDFY4 57705 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 49918000 49918000 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WDFY4-22 NM_020945 exon2 c.C223A p.L75I CTCCCCCTATTCC . 45 16 57 0 . 0 0 0 0 0 WDFY4 57705 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 49934093 49934093 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WDFY4-22 NM_020945 exon6 c.C759G p.L253L GAACCTCAGCATC . 170 31 119 0 . 0 0 0 0 0 WDFY4 57705 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 49951243 49951243 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WDFY4-22 NM_020945 exon12 c.G2109T p.R703S CTTCAGGAGGAAT . 140 57 178 1 . 0 0 0 0 0 WDFY4 57705 bcgsc.ca 37 10 49968459 49968459 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WDFY4-22 NM_020945 exon13 c.C2527T p.R843W CTGCCTCGGTTGT . 167 60 154 3 . 0 0 0 0 0 WDFY4 57705 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 50098737 50098737 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WDFY4-22 NM_020945 exon44 c.G7281A p.T2427T TCCCACGGGTGAT . 292 95 273 1 . 0 0 0 0 0 FAM170B 170370 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 50341914 50341914 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001164484 exon1 c.G50C p.G17A GTGGTCCCATCGG . 189 55 179 2 . 0 0 0 0 0 C10orf71 118461 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 50530784 50530784 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C10orf71-90 NM_001135196 exon3 c.G194T p.G65V TGTTTGGGACTTT . 264 92 247 1 . 0 0 0 0 0 C10orf71 118461 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 10 50532949 50532949 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C10orf71-90 NM_001135196 exon3 c.G2359T p.G787W AGCAATGGGCACG . 197 68 153 0 . 0 0 0 0 0 C10orf71 118461 bcgsc.ca 37 10 50534259 50534259 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C10orf71-90 NM_001135196 exon3 c.C3669A p.C1223X GCTGTGCCCCAGA . 221 80 173 2 . 0 0 0 0 0 SLC18A3 6572 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 50819769 50819769 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC18A3-92 NM_003055 exon1 c.G983T p.G328V AGATGGGCATGGC . 59 17 39 0 . 0 0 0 0 0 CHAT 1103 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 50854688 50854688 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CHAT-514 NM_020549 exon8 c.G1249C p.G417R AAGAACGGGGCCA . 273 86 235 0 . 0 0 0 0 0 PARG 8505 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 51040918 51040918 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PARG-948 NM_003631 exon16 c.G2578T p.E860X GATTCTCTGAAGA . 163 52 145 0 . 0 0 0 0 0 SGMS1 259230 broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 52067049 52067049 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SGMS1-227 NM_147156 exon11 c.G1095C p.L365L CCTGGCCAGGAGG . 112 54 80 2 . 0 0 0 0 0 A1CF 29974 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 52573773 52573773 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . A1CF-68 NM_001198819 exon12 c.C1215A p.G405G ACGGCCGCCCAGT . 93 32 83 0 . 0 0 0 0 0 PCDH15 65217 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 56106181 56106181 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDH15-193 NM_001142763 exon7 c.G553C p.D185H CATCATCTATATC . 75 15 56 0 . 0 0 0 0 0 BICC1 80114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 60562966 60562966 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BICC1-72 NM_001080512 exon15 c.C2145T p.A715A AAGGGCCCACCTT . 108 26 152 0 . 0 0 0 0 0 FAM13C 220965 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 61029737 61029737 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM13C-70 NM_198215 exon7 c.C725A p.S242Y AAGATGGAGCATC . 130 53 216 0 . 0 0 0 0 0 FAM13C 220965 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 61112192 61112192 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM13C-70 NM_198215 exon3 c.G162T p.L54L TTCTACCAGAGCC . 33 8 36 0 . 0 0 0 0 0 ANK3 288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 61815615 61815615 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ANK3-107 NM_020987 exon42 c.G12866C p.G4289A CCAGATCCATGTA . 111 47 123 0 . 0 0 0 0 0 TET1 80312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 70450767 70450767 + Silent SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TET1-663 NM_030625 exon12 c.A5607T p.S1869S AGCCTCATGCGGG . 96 26 74 0 . 0 0 0 0 0 STOX1 219736 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 70644278 70644278 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . STOX1-92 NM_152709 exon3 c.G726T p.Q242H CTGTCAGTCTTGC . 109 46 126 0 . 0 0 0 0 0 COL13A1 1305 broad.mit.edu;bcgsc.ca 37 10 71658494 71658494 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COL13A1-91 NM_001130103 exon14 c.G756T p.P252P ACCCCCGGTCATA . 79 12 79 0 . 0 0 0 0 0 CDH23 64072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 73326680 73326680 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CDH23-563 NM_052836 exon7 c.C611A p.T204K AGCTCACGGTCAA . 29 22 50 0 . 0 0 0 0 0 CDH23 64072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 73405591 73405591 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CDH23-563 NM_052836 exon12 c.C1144A p.L382M CAGGGCCTGAACA . 237 96 218 0 . 0 0 0 0 0 CDH23 64072 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 73447457 73447457 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CDH23-563 NM_022124 exon18 c.G2040T p.V680V CTCCGTGGTGGAG . 129 29 103 1 . 0 0 0 0 0 CHST3 9469 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 73766985 73766985 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CHST3-90 NM_004273 exon3 c.G196T p.D66Y AGCACCGACCCAG . 105 39 123 0 . 0 0 0 0 0 PPP3CB 5532 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 75239173 75239173 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PPP3CB-226 NM_001142354 exon2 c.G188T p.G63V ACTCGACCTTCTT . 107 29 126 0 . 0 0 0 0 0 DUSP13 51207 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 76861715 76861715 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DUSP13-226 NM_001007273 exon3 c.A188T p.Q63L TGATGCTGTTTCT . 56 10 62 0 . 0 0 0 0 0 RPS24 6229 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 79814544 79814544 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RPS24-91 NM_001142285 exon5 c.G646T p.V216F GCACTGGTCAGAA . 192 82 173 0 . 0 0 0 0 0 CDHR1 92211 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 85961590 85961590 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CDHR1-91 NM_001171971 exon7 c.C553A p.R185S GTGGACCGCCACA . 33 16 30 0 . 0 0 0 0 0 BMPR1A 657 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 88649911 88649911 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BMPR1A-1619 NM_004329 exon4 c.G160C p.D54H CCAGAGGATACCT . 234 47 254 0 . 0 0 0 0 0 IFIT5 24138 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 91177055 91177055 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IFIT5-90 NM_012420 exon2 c.G99A p.E33E GTTTGAGGTAGAA . 125 40 138 0 . 0 0 0 0 0 IDE 3416 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 94239048 94239048 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IDE-92 NM_004969 exon15 c.A1870G p.I624V CATAGATGGTATT . 77 26 88 1 . 0 0 0 0 0 PIPSL 266971 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 95720969 95720969 + RNA SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . . . . . TCCACCATGTGGA . 311 47 342 1 . 0 0 0 0 0 ALDH18A1 5832 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 97386505 97386505 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ALDH18A1-117 NM_002860 exon10 c.G1107T p.M369I TCGCGCCATTTCT . 97 21 115 1 . 0 0 0 0 0 PIK3AP1 118788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 98355338 98355338 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PIK3AP1-519 NM_152309 exon17 c.G2414C p.R805P AATCAGCGTCCTC . 180 39 203 0 . 0 0 0 0 0 SLIT1 6585 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 98766287 98766287 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLIT1-94 NM_003061 exon32 c.C3532A p.Q1178K TGAACTGCAGGTA . 229 91 212 1 . 0 0 0 0 0 PYROXD2 84795 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 100143584 100143584 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PYROXD2-90 NM_032709 exon16 c.G1717C p.V573L AGGCCACATGTGC . 102 41 116 1 . 0 0 0 0 0 PYROXD2 84795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 100159880 100159880 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PYROXD2-90 NM_032709 exon5 c.G450T p.Q150H GGAGAACTGGGCG . 79 32 109 0 . 0 0 0 0 0 CWF19L1 55280 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 101995432 101995432 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CWF19L1-90 NM_018294 exon13 c.G1464A p.Q488Q TCCAAACTGCAAA . 25 6 23 0 . 0 0 0 0 0 PAX2 5076 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 102568924 102568924 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PAX2-90 NM_003987 exon8 c.C919T p.L307L TCGAGTCTATCTG . 100 43 100 0 . 0 0 0 0 0 NFKB2 4791 hgsc.bcm.edu 37 10 104159416 104159416 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NFKB2-522 NM_001077494 exon14 c.G1410T p.A470A GGACGCGCGCGCG . 68 25 2 0 . 0 0 0 0 0 C10orf95 79946 hgsc.bcm.edu 37 10 104210735 104210735 + Missense_Mutation SNP C C A rs2281878 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C10orf95-91 NM_024886 exon2 c.G253T p.A85S CGGAAGCTGTGGG . 24 20 0 0 C|0.759;A|0.241 0 0 0 0 0 INA 9118 hgsc.bcm.edu 37 10 105037222 105037222 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . INA-154 NM_032727 exon1 c.A254G p.N85S GCACCAACGAGTA . 50 13 10 0 . 0 0 0 0 0 CALHM3 119395 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 105236155 105236155 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CALHM3-67 NM_001129742 exon2 c.C439A p.Q147K GTACCTGGCTGGG . 425 140 254 0 . 0 0 0 0 0 SORCS3 22986 hgsc.bcm.edu;broad.mit.edu 37 10 106401534 106401534 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SORCS3-99 NM_014978 exon1 c.C449T p.P150L CTGCTCCGGCCGA . 107 14 18 0 . 0 0 0 0 0 SORCS3 22986 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 106737189 106737189 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SORCS3-99 NM_014978 exon4 c.C892A p.Q298K TATATCCAGAGCC . 58 9 31 0 . 0 0 0 0 0 SORCS3 22986 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 106970974 106970974 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SORCS3-99 NM_014978 exon17 c.T2341A p.C781S AAGGACTGCAGCC . 216 59 186 0 . 0 0 0 0 0 SORCS1 114815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 108338952 108338952 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SORCS1-153 NM_001206572 exon26 c.G3429T p.M1143I ACTGATCATCTCT . 115 26 76 0 . 0 0 0 0 0 SORCS1 114815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 108448031 108448031 + Missense_Mutation SNP G G C rs145364719 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SORCS1-153 NM_001206572 exon10 c.C1479G p.I493M ATATGTGATGAAA . 189 26 146 0 G|1.000;A|0.000 0 0 0 0 0 SORCS1 114815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 108589374 108589374 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SORCS1-153 NM_001206572 exon3 c.C684A p.T228T CAAAATGGTTTTC . 160 17 108 0 . 0 0 0 0 0 SORCS1 114815 broad.mit.edu;bcgsc.ca 37 10 108923768 108923768 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SORCS1-153 NM_001206572 exon1 c.C517T p.H173Y GGTTGTGTGCTGA . 127 8 85 0 . 0 0 0 0 0 RBM20 282996 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 112572474 112572474 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001134363 exon9 c.G2319T p.K773N TCTGAAGCAGCAG . 159 70 98 0 . 0 0 0 0 0 ADRA2A 150 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 112838012 112838012 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADRA2A-90 NM_000681 exon1 c.C258T p.F86F CCTCTTCCTGGTG . 239 79 128 0 . 0 0 0 0 0 ADRA2A 150 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 112838129 112838129 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADRA2A-90 NM_000681 exon1 c.G375T p.L125L CTACCTGGCGCTC . 311 83 161 0 . 0 0 0 0 0 TDRD1 56165 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 115991245 115991245 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TDRD1-90 NM_198795 exon26 c.3539delA p.K1180fs TTTCAGAAACAGC . 59 18 52 0 . 0 0 0 0 0 TDRD1 56165 hgsc.bcm.edu 37 10 115991246 115991247 + Frame_Shift_Del DEL AA AA - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 AA AA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TDRD1-90 NM_198795 exon26 c.3540_3541del p.1180_1181del TTCAGAAACAGCA . 59 0 52 0 . 0 0 0 0 0 TDRD1 56165 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 10 115991247 115991247 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TDRD1-90 NM_198795 exon26 c.A3541G p.T1181A TCAGAAACAGCAT . 59 17 52 0 . 0 0 0 0 0 ABLIM1 3983 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 116201527 116201527 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ABLIM1-153 NM_002313 exon18 c.C1952T p.S651F GTTTTAGATGATG . 163 39 90 0 . 0 0 0 0 0 ABLIM1 3983 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 116444073 116444073 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ABLIM1-153 NM_001003407 exon1 c.C40T p.H14Y TGTGATGAGGGTC . 275 63 138 0 . 0 0 0 0 0 GFRA1 2674 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 118030372 118030372 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GFRA1-93 NM_005264 exon3 c.G296T p.C99F CGCAGGCAGTTCT . 152 37 83 0 . 0 0 0 0 0 PNLIP 5406 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 118306857 118306857 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PNLIP-92 NM_000936 exon3 c.G98T p.W33L CCCCATGGTCAGG . 161 21 104 0 . 0 0 0 0 0 PNLIP 5406 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 118315585 118315585 + Missense_Mutation SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PNLIP-92 NM_000936 exon9 c.T885G p.D295E CCCTGATGGCTTT . 184 45 104 0 . 0 0 0 0 0 PNLIPRP1 5407 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 118350667 118350667 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PNLIPRP1-154 NM_006229 exon2 c.26delT p.L9fs TCACACTTTTCCT . 69 19 38 0 . 0 0 0 0 0 PNLIPRP2 5408 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 118383552 118383552 + RNA SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PNLIPRP2-67 . . . . GGTCCCCCGAGGA . 209 51 111 1 . 0 0 0 0 0 C10orf82 143379 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 118424447 118424447 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C10orf82-90 NM_144661 exon4 c.G286C p.V96L TCTTTACATATTT . 46 7 32 0 . 0 0 0 0 0 C10orf82 143379 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 118425218 118425218 + Missense_Mutation SNP C C G rs144390968 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C10orf82-90 NM_144661 exon3 c.G175C p.A59P CCACTGCGCAGCA . 260 35 149 0 C|1.000;T|0.000 0 0 0 0 0 VAX1 11023 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 118893665 118893665 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . VAX1-92 NM_001112704 exon3 c.C859A p.R287S ACAGGCGGCTGGC . 62 16 18 0 . 0 0 0 0 0 VAX1 11023 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 118896161 118896161 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . VAX1-92 NM_001112704 exon2 c.G251T p.G84V ATGGACCCCTTGG . 325 74 207 2 . 0 0 0 0 0 VAX1 11023 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 118897336 118897336 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . VAX1-92 NM_001112704 exon1 c.C232A p.L78M GGACCAGGATCCG . 146 58 50 0 . 0 0 0 0 0 KCNK18 338567 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 118969655 118969655 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KCNK18-91 NM_181840 exon3 c.C1000A p.P334T GAACACCCTAACT . 316 105 199 0 . 0 0 0 0 0 SLC18A2 6571 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 119003663 119003663 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC18A2-90 NM_003054 exon3 c.C303A p.T101T TCAGACCGCCACA . 231 41 135 0 . 0 0 0 0 0 EMX2 2018 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 119305183 119305183 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EMX2-90 NM_004098 exon2 c.G447T p.A149A CAACGCGCTGGCC . 606 223 410 1 . 0 0 0 0 0 PRLHR 2834 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 120353662 120353662 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRLHR-90 NM_004248 exon2 c.C1095G p.T365T GCTGACGGTCATA . 331 53 161 0 . 0 0 0 0 0 PRLHR 2834 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 120354576 120354576 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRLHR-90 NM_004248 exon2 c.G181T p.G61W TCAGCCCCTTCAG . 372 97 80 0 . 0 0 0 0 0 SFXN4 119559 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 120921874 120921874 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SFXN4-91 NM_213649 exon3 c.G230A p.S77N GCAGGGCTGGAAA . 329 122 195 0 . 0 0 0 0 0 SEC23IP 11196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 121685604 121685604 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SEC23IP-93 NM_007190 exon13 c.G2178T p.E726D ACAAGAGCAAAGT . 168 68 134 0 . 0 0 0 0 0 TACC2 10579 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 124008228 124008228 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TACC2-296 NM_206862 exon20 c.C8463T p.A2821A GCAAGCCCTGGCC . 181 33 110 0 . 0 0 0 0 0 DMBT1 1755 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 124402801 124402801 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DMBT1-494 NM_007329 exon53 c.G7129C p.G2377R TACCGAGGCTGTG . 570 143 304 2 . 0 0 0 0 0 HMX2 3167 broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 124909282 124909282 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HMX2-90 NM_005519 exon2 c.C465A p.V155V CACCGTCTTTTCG . 196 29 98 1 . 0 0 0 0 0 CPXM2 119587 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 125530486 125530486 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CPXM2-92 NM_198148 exon8 c.G1048T p.G350C TCAGGCCCTGGTG . 247 85 146 2 . 0 0 0 0 0 CPXM2 119587 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 125530489 125530489 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CPXM2-92 NM_198148 exon8 c.C1045A p.Q349K GGCCCTGGTGGCT . 246 80 154 3 . 0 0 0 0 0 FANK1 92565 broad.mit.edu 37 10 127585214 127585214 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FANK1-91 NM_145235 exon1 c.G3C p.M1I GACCATGGAGCCC . 218 10 12 0 . 0 0 0 0 0 ADAM12 8038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 127806696 127806696 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADAM12-716 NM_021641 exon6 c.G523T p.V175F CCCGGACGCTTTT . 235 54 135 0 . 0 0 0 0 0 C10orf90 118611 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 128147643 128147643 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C10orf90-92 NM_001004298 exon6 c.C1863A p.S621R CTTCTTGCTGGTG . 200 64 100 1 . 0 0 0 0 0 C10orf90 118611 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 128153420 128153420 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C10orf90-92 NM_001004298 exon4 c.G1379C p.C460S GACAGACAGTCAT . 279 25 164 0 . 0 0 0 0 0 MGMT 4255 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 131565118 131565118 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MGMT-1108 NM_002412 exon5 c.G574C p.G192R TCCGGAGGACTGG . 338 41 220 0 . 0 0 0 0 0 EBF3 253738 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 131638572 131638572 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EBF3-91 NM_001005463 exon15 c.G1561T p.V521L GGACCACGGGCGC . 207 30 125 0 . 0 0 0 0 0 JAKMIP3 282973 ucsc.edu;bcgsc.ca 37 10 133931066 133931066 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . JAKMIP3-23 NM_001105521 exon2 c.G621T p.E207D GCGGGAGATCCGC . 233 86 114 2 . 0 0 0 0 0 PWWP2B 170394 hgsc.bcm.edu 37 10 134218296 134218296 + Missense_Mutation SNP C C G rs10747057 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PWWP2B-90 NM_001098637 exon2 c.C292G p.R98G ACCACCCGCCCCG . 21 14 0 0 C|0.431;G|0.569 0 0 0 0 0 PWWP2B 170394 hgsc.bcm.edu 37 10 134219066 134219066 + Silent SNP G G C rs76595411 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PWWP2B-90 NM_001098637 exon2 c.G1062C p.V354V GCTGGTGGGGGAG . 40 25 3 0 G|0.955;C|0.045 0 0 0 0 0 TTC40 54777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 134648207 134648207 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001200049 exon48 c.G6817A p.E2273K GCTCCTCCAGGGG . 239 68 154 0 . 0 0 0 0 0 TTC40 54777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 134663902 134663902 + Missense_Mutation SNP C C T rs143782266 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001200049 exon41 c.G5798A p.G1933E AGTGCCCCGTGTG . 346 92 103 0 C|0.999;G|0.001 0 0 0 0 0 TTC40 54777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 134664665 134664665 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001200049 exon40 c.G5719T p.A1907S AGTCCGCCAGCAG . 209 31 145 0 . 0 0 0 0 0 TUBGCP2 10844 broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 135106162 135106162 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TUBGCP2-90 NM_001256617 exon9 c.G1139T p.G380V GACCCCCCAAGAC . 226 68 113 2 . 0 0 0 0 0 ZNF511 118472 hgsc.bcm.edu 37 10 135122507 135122507 + Silent SNP G G A rs3008357 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF511-90 NM_145806 exon1 c.G60A p.P20P GGAGCCGCTGCCT . 39 15 0 0 G|0.816;A|0.184 0 0 0 0 0 ECHS1 1892 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 135179540 135179540 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ECHS1-90 NM_004092 exon6 c.G679T p.E227X TTTTTTCTGCACA . 127 28 78 0 . 0 0 0 0 0 MTG1 92170 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 135209699 135209699 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MTG1-91 NM_138384 exon3 c.G210T p.Q70H GTTTCAGGAAACC . 146 24 89 0 . 0 0 0 0 0 ANO9 338440 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 418479 418479 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ANO9-227 NM_001012302 exon23 c.G2241A p.M747I ATGCCACATCTTC . 126 60 156 1 . 0 0 0 0 0 PHRF1 57661 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 607214 607214 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PHRF1-22 NM_020901 exon14 c.A1755T p.Q585H CTGTCAAGGCAGG . 45 32 21 0 . 0 0 0 0 0 EPS8L2 64787 bcgsc.ca 37 11 721570 721570 + Silent SNP C C T rs7635 bycluster;byfrequency;by1000genomes TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EPS8L2-91 NM_022772 exon10 c.C774T p.I258I GCAAATCCTCAAC . 175 6 162 1 C|0.686;T|0.314 0 0 0 0 0 MUC5B 727897 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 1269567 1269567 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_002458 exon31 c.G11457T p.M3819I CACCATGTCCACA . 599 261 740 1 . 0 0 0 0 0 BRSK2 9024 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 1464775 1464775 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BRSK2-333 NM_001256630 exon8 c.G828T p.R276R GAAGCGGGGCGTG . 62 34 51 0 . 0 0 0 0 0 KRTAP5-1 387264 broad.mit.edu 37 11 1606164 1606164 + Missense_Mutation SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KRTAP5-1-44 NM_001005922 exon1 c.A316C p.K106Q CCCCCTTGGAGCC . 86 7 104 2 . 0 0 0 0 0 C11orf40 143501 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 4592668 4592668 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C11orf40-92 NM_144663 exon4 c.G639C p.L213F GGACTTCAAGTAG . 37 22 70 0 . 0 0 0 0 0 OR51A4 401666 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 4968178 4968178 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR51A4-71 NM_001005329 exon1 c.C153A p.I51I TGTCTTGATGATA . 510 300 794 1 . 0 0 0 0 0 OR52E8 390079 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 5878658 5878658 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR52E8-70 NM_001005168 exon1 c.G275C p.W92S TTGAACCAGAAGA . 113 62 158 1 . 0 0 0 0 0 FAM160A2 84067 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 6245247 6245247 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM160A2-92 NM_032127 exon3 c.G370T p.E124X GTTCCTCGACCCC . 73 36 101 0 . 0 0 0 0 0 DCHS1 8642 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 6661671 6661671 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DCHS1-73 NM_003737 exon2 c.G1174T p.D392Y CTGGGTCTGACAC . 69 33 134 0 . 0 0 0 0 0 OR2D2 120776 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 6913108 6913108 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2D2-501 NM_003700 exon1 c.C624A p.L208L AGGTATGAGGAGA . 68 37 92 0 . 0 0 0 0 0 OR2D3 120775 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 6942958 6942958 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2D3-68 NM_001004684 exon1 c.C726A p.I242I TGTTATCCAGATG . 146 75 213 0 . 0 0 0 0 0 OR5P2 120065 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 7817640 7817640 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR5P2-496 NM_153444 exon1 c.C850A p.L284M AGATCAGGGGGTT . 206 119 224 0 . 0 0 0 0 0 SBF2 81846 bcgsc.ca 37 11 10019853 10019853 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SBF2-93 NM_030962 exon9 c.C935A p.P312Q GGTTCTGGGAGGG . 53 4 72 0 . 0 0 0 0 0 ADM 133 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 10328160 10328160 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADM-514 NM_001124 exon4 c.C530A p.P177Q CCCCCCCGAGTGG . 118 70 96 0 . 0 0 0 0 0 SPON1 10418 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 14063180 14063180 + RNA SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPON1-1 . . . . CAGCGGGAACAGG . 57 30 99 1 . 0 0 0 0 0 INSC 387755 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 15197588 15197588 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . INSC-94 NM_001031853 exon3 c.G499T p.E167X GTCAGCGAGTACA . 146 59 187 0 . 0 0 0 0 0 SOX6 55553 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 11 16256218 16256218 + Splice_Site SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SOX6-93 NM_001145811 exon5 c.446-1G>T . AGGAATCTATTAA . 11 6 12 0 . 0 0 0 0 0 USH1C 10083 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 17552712 17552712 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . USH1C-91 NM_005709 exon4 c.G376T p.V126F GCCCGACGCTGTC . 128 73 199 0 . 0 0 0 0 0 NELL1 4745 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 21596527 21596527 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NELL1-155 NM_006157 exon20 c.G2392T p.V798F GGAAGAGTCTGTT . 58 26 105 0 . 0 0 0 0 0 SLC17A6 57084 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 22363120 22363120 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC17A6-580 NM_020346 exon2 c.G133C p.E45Q CTGACGGAGGATG . 57 33 102 0 . 0 0 0 0 0 SLC17A6 57084 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 22399006 22399006 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC17A6-580 NM_020346 exon12 c.G1469T p.G490V ATGGTGGAGTTAT . 88 51 149 0 . 0 0 0 0 0 KCNA4 3739 hgsc.bcm.edu 37 11 30034154 30034154 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KCNA4-517 NM_002233 exon2 c.G72T p.Q24H CCGGGCCTGGGCA . 19 6 15 0 . 0 0 0 0 0 DCDC5 100506627 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 30915876 30915876 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DCDC5-23 NM_020869 exon16 c.G2133T p.V711V GGGCTGCACAGGG . 56 26 85 0 . 0 0 0 0 0 WT1 7490 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 32414240 32414240 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WT1-6891 NM_024424 exon8 c.G1311T p.Q437H TTTGAGCTGGTCT . 142 80 185 0 . 0 0 0 0 0 CCDC73 493860 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 32635948 32635948 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CCDC73-91 NM_001008391 exon16 c.T1916A p.I639K GGAACAGGATTTT . 38 21 52 0 . 0 0 0 0 0 QSER1 79832 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 32956724 32956724 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . QSER1-95 NM_001076786 exon4 c.G3533T p.R1178L CTAGACGGCCAGG . 68 35 131 0 . 0 0 0 0 0 KIAA1549L 25758 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 33564462 33564462 + Silent SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_012194 exon1 c.A462T p.S154S TTTGTCAGCAGCT . 65 33 94 0 . 0 0 0 0 0 PAMR1 25891 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 35453941 35453941 + Missense_Mutation SNP A A C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PAMR1-70 NM_015430 exon12 c.T2177G p.L726R AAAGGCAGCACCT . 45 21 63 1 . 0 0 0 0 0 PAMR1 25891 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 35457622 35457622 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PAMR1-70 NM_015430 exon10 c.C1213A p.P405T TGGTAGGGGCACT . 255 142 308 0 . 0 0 0 0 0 RAG1 5896 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 36596616 36596616 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RAG1-230 NM_000448 exon2 c.G1762T p.D588Y CTTGATGATTACC . 136 75 198 1 . 0 0 0 0 0 LRRC4C 57689 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 40137767 40137767 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRRC4C-521 NM_001258419 exon7 c.C76A p.L26M CAAGCAGGGGGTC . 136 69 171 1 . 0 0 0 0 0 LRP4 4038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 46880716 46880716 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRP4-94 NM_002334 exon38 c.G5536T p.D1846Y CCGTGTCTGTCTT . 87 27 107 0 . 0 0 0 0 0 OR4S1 256148 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 48328090 48328090 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR4S1-69 NM_001004725 exon1 c.G316C p.G106R TTCTTTGGTGGCA . 84 52 116 0 . 0 0 0 0 0 FOLH1 2346 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 49195014 49195014 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FOLH1-579 NM_004476 exon10 c.C1120T p.L374L CTCCCAGAATGAC . 80 38 117 0 . 0 0 0 0 0 OR4C46 119749 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 51515827 51515827 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR4C46-69 NM_001004703 exon1 c.G546T p.L182F CCCTTTGCTCAAC . 103 54 124 0 . 0 0 0 0 0 OR4C46 119749 ucsc.edu;bcgsc.ca 37 11 51515989 51515989 + Silent SNP C C T rs141793341 bycluster;byfrequency;by1000genomes TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR4C46-69 NM_001004703 exon1 c.C708T p.S236S CCTCTCCACCTGT . 114 33 143 0 C|0.991;T|0.009 0 0 0 0 0 OR4C15 81309 bcgsc.ca 37 11 55322211 55322211 + Silent SNP A A G rs9804659 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR4C15-70 NM_001001920 exon1 c.A429G p.K143K GACAAAAACCATC . 44 4 60 0 A|0.760;G|0.240 0 0 0 0 0 OR4C11 219429 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 55371701 55371701 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR4C11-69 NM_001004700 exon1 c.G149A p.S50N GTCCGGCTGGACT . 34 23 59 0 . 0 0 0 0 0 OR4C6 219432 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 55432829 55432829 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR4C6-70 NM_001004704 exon1 c.T187A p.F63I CTTACCTTCTTGT . 113 70 141 0 . 0 0 0 0 0 OR5D16 390144 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 55606310 55606310 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR5D16-73 NM_001005496 exon1 c.C83T p.P28L AAATTCCCCTCTT . 73 41 92 0 . 0 0 0 0 0 OR5W2 390148 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 55681212 55681212 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR5W2-70 NM_001001960 exon1 c.C847G p.P283A ACATGGGAACCAC . 53 16 93 0 . 0 0 0 0 0 OR8H1 219469 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 56058500 56058500 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR8H1-71 NM_001005199 exon1 c.C39A p.I13I CGTAAGGATGAAG . 29 16 41 0 . 0 0 0 0 0 OR8U1 219417 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 56143148 56143148 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR8U1-72 NM_001005204 exon1 c.C49A p.L17I GTGGGCCTCACAG . 71 44 115 0 . 0 0 0 0 0 OR5R1 219479 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 56185247 56185247 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR5R1-70 NM_001004744 exon1 c.G462T p.L154L GGCAACCAGGAAG . 94 56 137 0 . 0 0 0 0 0 OR1S2 219958 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 57970677 57970677 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR1S2-69 NM_001004459 exon1 c.G977C p.X326S GGGCATCAAAGGG . 104 66 170 0 . 0 0 0 0 0 OR5B3 441608 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 58170454 58170454 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR5B3-68 NM_001005469 exon1 c.C429T p.A143A GCCTATGGCCAGA . 97 57 152 0 . 0 0 0 0 0 OR5B2 390190 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 58190520 58190520 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR5B2-71 NM_001005566 exon1 c.C215A p.S72Y GCTGAGGAGTATC . 129 80 189 0 . 0 0 0 0 0 OR5B12 390191 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 58207133 58207133 + Silent SNP G G A rs146093633 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR5B12-68 NM_001004733 exon1 c.C492T p.L164L GAAGGAGAGCCTG . 139 83 161 0 G|1.000;A|0.000 0 0 0 0 0 OR5AN1 390195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 59132631 59132631 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR5AN1-69 NM_001004729 exon1 c.G700T p.G234C GCTAAAGGCAGGT . 112 69 164 0 . 0 0 0 0 0 CCDC86 79080 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 60617436 60617436 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CCDC86-90 NM_024098 exon3 c.G912T p.E304D GGCTGAGAACCTG . 95 45 146 1 . 0 0 0 0 0 LRRC10B 390205 hgsc.bcm.edu 37 11 61277031 61277031 + Silent SNP C C T rs1139011 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001145077 exon1 c.C561T p.L187L CATCCTCGACCTC . 25 6 3 0 C|0.816;T|0.184 0 0 0 0 0 MYRF 745 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 61533677 61533677 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001127392 exon3 c.G382T p.A128S CCCAAGGCTCCCT . 61 38 58 1 . 0 0 0 0 0 SLC22A24 283238 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 62886491 62886491 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001136506 exon4 c.C723A p.Y241X AACACTGTAGGAA . 147 95 181 2 . 0 0 0 0 0 FLRT1 23769 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 63885551 63885551 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FLRT1-90 NM_013280 exon2 c.G1812A p.G604G GTCAGGGACCAAG . 171 79 178 1 . 0 0 0 0 0 NRXN2 9379 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 64375221 64375221 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NRXN2-232 NM_015080 exon23 c.C4586T p.P1529L TTGCGGGGTGACA . 124 58 59 0 . 0 0 0 0 0 NRXN2 9379 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 64402917 64402917 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NRXN2-232 NM_015080 exon18 c.C3411A p.T1137T GTATGTGGTCCCG . 98 33 62 1 . 0 0 0 0 0 ZFPL1 7542 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 64855517 64855517 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZFPL1-91 NM_006782 exon8 c.G864T p.R288R AGGCCGGGCCGCA . 100 41 58 0 . 0 0 0 0 0 TM7SF2 7108 hgsc.bcm.edu 37 11 64880090 64880090 + Silent SNP G G C rs4930284 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TM7SF2-91 NM_003273 exon2 c.G156C p.P52P CCTGCCGGGGCTG . 8 8 0 0 G|0.005;C|0.995 0 0 0 0 0 FAM89B 23625 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 65340987 65340987 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM89B-90 NM_001098784 exon2 c.G455T p.G152V GATGCGGGCCTGT . 225 25 159 1 . 0 0 0 0 0 GAL3ST3 89792 hgsc.bcm.edu 37 11 65810209 65810209 + Silent SNP C C T rs61895584 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GAL3ST3-91 NM_033036 exon3 c.G1065A p.P355P CTGCCACGGCTGC . 8 8 0 0 C|0.233;T|0.767 0 0 0 0 0 GAL3ST3 89792 hgsc.bcm.edu;broad.mit.edu 37 11 65810462 65810463 + Frame_Shift_Del DEL GC GC - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 GC GC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GAL3ST3-91 NM_033036 exon3 c.811_812del p.271_271del CTGGCGGCGCGCG . 54 24 4 0 . 0 0 0 0 0 TMEM151A 256472 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 66062127 66062127 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMEM151A-90 NM_153266 exon2 c.C410A p.A137E TGCTGGCGCTGAT . 93 21 13 0 . 0 0 0 0 0 ACTN3 89 broad.mit.edu;bcgsc.ca 37 11 66326794 66326794 + RNA SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ACTN3-90 . . . . CCTTTGAGAGCGA . 245 88 66 1 . 0 0 0 0 0 CCS 9973 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 66366693 66366693 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CCS-90 NM_005125 exon3 c.G219T p.A73A GCAGGCGGTACTC . 90 20 87 0 . 0 0 0 0 0 SPTBN2 6712 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 66466921 66466921 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPTBN2-155 NM_006946 exon17 c.C3732G p.I1244M GGCGTGGATGTTG . 197 79 147 2 . 0 0 0 0 0 RHOD 29984 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 66838961 66838961 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RHOD-659 NM_014578 exon5 c.G521A p.R174Q CGGCTCGGCTCCA . 192 41 38 0 . 0 0 0 0 0 GPR152 390212 bcgsc.ca;mdanderson.org 37 11 67219676 67219676 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR152-90 NM_206997 exon1 c.G520A p.V174I ACCAGACGGCAGC . 131 48 36 1 . 0 0 0 0 0 PITPNM1 9600 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 67264702 67264702 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PITPNM1-227 NM_001130848 exon14 c.G2146T p.A716S ACTCACCCTCCAG . 240 100 210 0 . 0 0 0 0 0 FGF3 2248 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 69625429 69625429 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FGF3-847 NM_005247 exon3 c.C364A p.H122N GCTCGTGGATCCG . 204 104 211 1 . 0 0 0 0 0 SHANK2 22941 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 70331792 70331792 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SHANK2-94 NM_133266 exon10 c.G2842T p.G948W CTTGCCCATCTGC . 161 76 211 1 . 0 0 0 0 0 KRTAP5-9 3846 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 71259735 71259735 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_005553 exon1 c.G32T p.G11V GCTGTGGCTCCAG . 331 189 405 1 . 0 0 0 0 0 UCP2 7351 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 73687909 73687909 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . UCP2-90 NM_003355 exon5 c.A491T p.K164M ATGGTCTTGTAGG . 229 116 281 0 . 0 0 0 0 0 ARRB1 408 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 11 74978733 74978733 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARRB1-567 NM_004041 exon15 c.A1108T p.T370S CTGGCGTCTCGTT . 13 8 19 0 . 0 0 0 0 0 UVRAG 7405 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 75563004 75563004 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . UVRAG-229 NM_003369 exon2 c.A194T p.Y65F ATACCTACTTTAC . 64 33 92 0 . 0 0 0 0 0 TMEM135 65084 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 87013485 87013485 + Splice_Site SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMEM135-514 NM_001168724 exon7 c.632+1G>T . TTCAATGTGAGCT . 56 24 105 0 . 0 0 0 0 0 CTSC 1075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 88045699 88045699 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CTSC-90 NM_001814 exon3 c.G342C p.V114V AGTGGTCACCTTG . 61 32 62 0 . 0 0 0 0 0 GRM5 2915 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 88242036 88242036 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GRM5-949 NM_001143831 exon9 c.C3363T p.I1121I GACTTCGATGGCC . 71 31 58 0 . 0 0 0 0 0 NOX4 50507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 89223635 89223635 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NOX4-515 NM_001143836 exon2 c.G144C p.Q48H CAACATCTGGTGG . 27 17 31 0 . 0 0 0 0 0 FAT3 120114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 92534391 92534391 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAT3-73 NM_001008781 exon9 c.G8212A p.V2738I CAGAATGTCTGGT . 56 30 116 0 . 0 0 0 0 0 FOLR4 390243 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 94039684 94039684 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FOLR4-23 NM_001199206 exon2 c.C144T p.I48I GTGCATCCCCTGG . 79 39 87 0 . 0 0 0 0 0 CNTN5 53942 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 99942487 99942487 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CNTN5-366 NM_001243270 exon11 c.A1350T p.Q450H GAATCAATCAGAT . 81 50 127 0 . 0 0 0 0 0 ATM 472 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 108236144 108236144 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ATM-3419 NM_000051 exon63 c.G9080T p.S3027I TGCTCAGTGTTGG . 46 28 67 0 . 0 0 0 0 0 ARHGAP20 57569 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 110482045 110482045 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARHGAP20-230 NM_020809 exon8 c.G696T p.M232I CCCTAGCATTGGT . 48 23 99 0 . 0 0 0 0 0 TIMM8B 26521 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 111956172 111956172 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TIMM8B-90 NM_012459 exon2 c.G144T p.M48I TAACTCCATGAAG . 42 24 48 0 . 0 0 0 0 0 BCO2 83875 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 112087010 112087010 + Missense_Mutation SNP A A C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BCO2-68 NM_031938 exon11 c.A1583C p.E528A ATGAAGAAGATGG . 95 57 128 0 . 0 0 0 0 0 FXYD6-FXYD2 100533181 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 117691574 117691574 + Missense_Mutation SNP C C T rs139816783 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001204268 exon9 c.G410A p.R137K GCTCACCTGCGCT . 34 18 43 0 C|1.000;T|0.000 0 0 0 0 0 SCN2B 6327 bcgsc.ca 37 11 118038851 118038851 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SCN2B-90 NM_004588 exon3 c.C397G p.P133A GGTCAGGGGGGTT . 199 127 253 4 . 0 0 0 0 0 NLRX1 79671 bcgsc.ca 37 11 119052826 119052826 + Missense_Mutation SNP C C A rs4245191 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NLRX1-92 NM_024618 exon9 c.C2378A p.A793E TGACGGCGGCAGG . 109 5 107 0 C|0.378;A|0.622 0 0 0 0 0 TECTA 7007 bcgsc.ca 37 11 120998820 120998820 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TECTA-225 NM_005422 exon8 c.G2134C p.V712L GAGACCGTGTGCC . 82 47 75 2 . 0 0 0 0 0 HSPA8 3312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 122929389 122929389 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HSPA8-654 NM_006597 exon7 c.G1473T p.V491V CTTGTCCACAGCA . 28 13 61 0 . 0 0 0 0 0 HSPA8 3312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 122929391 122929391 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HSPA8-654 NM_006597 exon7 c.G1471T p.V491L TGTCCACAGCAGA . 28 13 61 0 . 0 0 0 0 0 OR10S1 219873 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 123847992 123847992 + Missense_Mutation SNP C C A rs199683540 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR10S1-70 NM_001004474 exon1 c.G407T p.R136L AGATAGCGGTCAT . 101 57 119 0 . 0 0 0 0 0 VWA5A 4013 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 124015980 124015980 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . VWA5A-92 NM_014622 exon17 c.G2191T p.V731L CTGGCCGTGATCT . 65 44 125 0 . 0 0 0 0 0 OR8A1 390275 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 124440239 124440239 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR8A1-69 NM_001005194 exon1 c.C275T p.S92F ACTCCTCCGTCAT . 84 46 122 0 . 0 0 0 0 0 NTM 50863 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 132204993 132204993 + Missense_Mutation SNP G G T rs145004908 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NTM-95 NM_001144058 exon8 c.G1021T p.V341F GGCTGCGTCTGGC . 43 27 57 0 G|1.000;A|0.000 0 0 0 0 0 CACNA2D4 93589 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 1994182 1994182 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CACNA2D4-23 NM_172364 exon10 c.C1129A p.L377M CTCTCAGGGCTTG . 113 73 132 0 . 0 0 0 0 0 FGF6 2251 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 4554551 4554551 + Silent SNP G G C rs202212518 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FGF6-659 NM_020996 exon1 c.C186G p.R62R CCCGGCGCGAGAC . 86 52 69 0 G|0.999;A|0.000 0 0 0 0 0 GALNT8 26290 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 4829958 4829958 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GALNT8-230 NM_017417 exon1 c.G115T p.G39C TTTACGGGTGGTC . 144 91 124 1 . 0 0 0 0 0 KCNA6 3742 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 4920365 4920365 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KCNA6-93 NM_002235 exon1 c.G1158A p.G386G CATCGGGGTCATC . 267 176 275 1 . 0 0 0 0 0 KCNA5 3741 bcgsc.ca 37 12 5153809 5153809 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KCNA5-715 NM_002234 exon1 c.G496T p.D166Y TTCTTCGACCGCA . 105 75 103 2 . 0 0 0 0 0 ANO2 57101 broad.mit.edu;bcgsc.ca 37 12 6030236 6030236 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ANO2-139 NM_020373 exon3 c.G492T p.E164D TCCAGCCTCCATC . 85 62 79 2 . 0 0 0 0 0 VWF 7450 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 6078387 6078387 + Missense_Mutation SNP G G T rs192262780 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . VWF-163 NM_000552 exon45 c.C7719A p.S2573R GCGACAGCTTGGG . 155 102 173 0 G|0.999;T|0.000 0 0 0 0 0 VWF 7450 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 6125362 6125362 + Nonsense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . VWF-163 NM_000552 exon31 c.C5348G p.S1783X ATTTCTGAAGTCA . 286 74 227 0 . 0 0 0 0 0 LAG3 3902 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 6883823 6883823 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LAG3-90 NM_002286 exon4 c.A574T p.S192C TCCTTCAGCCGCC . 104 66 89 1 . 0 0 0 0 0 CD163L1 283316 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 7528358 7528358 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CD163L1-100 NM_174941 exon10 c.C2624T p.P875L ACAATGGGGCATA . 135 95 126 0 . 0 0 0 0 0 C3AR1 719 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 8212382 8212382 + Missense_Mutation SNP G G C rs61736561 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C3AR1-227 NM_004054 exon2 c.C400G p.R134G CATTGCGATGATT . 122 76 151 0 G|0.986;A|0.014 0 0 0 0 0 MFAP5 8076 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 8813475 8813475 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MFAP5-577 NM_003480 exon3 c.C78A p.V26V ACTATTGACCCCC . 58 35 77 0 . 0 0 0 0 0 PZP 5858 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 9334698 9334698 + Missense_Mutation SNP G G T rs188078627 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PZP-157 NM_002864 exon14 c.C1562A p.A521D GATAAGGCAAAAC . 118 75 104 1 G|0.999;A|0.001 0 0 0 0 0 PZP 5858 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 9353011 9353011 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PZP-157 NM_002864 exon7 c.C704A p.P235Q ATCTTTGGCACCT . 60 36 69 1 . 0 0 0 0 0 STYK1 55359 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 10782211 10782211 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . STYK1-1379 NM_018423 exon6 c.G514T p.G172W GTTTCCCCAGGTA . 64 33 91 0 . 0 0 0 0 0 ATF7IP 55729 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 14578095 14578095 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ATF7IP-252 NM_018179 exon2 c.G1246T p.E416X GTTATTGAAGATA . 31 19 54 1 . 0 0 0 0 0 PDE3A 5139 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 20523173 20523173 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PDE3A-94 NM_000921 exon1 c.G955T p.E319X CCGAGGGAACAGG . 37 25 53 0 . 0 0 0 0 0 SLCO1C1 53919 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 20886031 20886031 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLCO1C1-97 NM_017435 exon10 c.T1375A p.Y459N GTCTCCTACCAAG . 49 30 51 0 . 0 0 0 0 0 SOX5 6660 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 23893815 23893815 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SOX5-655 NM_006940 exon5 c.C727A p.Q243K GTTGCTGCTTGGC . 50 33 74 0 . 0 0 0 0 0 MANSC4 100287284 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 27915672 27915672 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001146221 exon3 c.A1022T p.X341L TTTTACTATGAAG . 60 33 43 0 . 0 0 0 0 0 CCDC91 55297 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 28605587 28605587 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CCDC91-90 NM_018318 exon10 c.G1101C p.Q367H AAGTCAGGTTAGT . 35 14 53 0 . 0 0 0 0 0 OVCH1 341350 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 29598275 29598275 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OVCH1-210 NM_183378 exon23 c.G2817T p.R939S TGTCACCCTCACC . 52 34 64 0 . 0 0 0 0 0 OVCH1 341350 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 29607850 29607850 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OVCH1-210 NM_183378 exon21 c.G2454T p.Q818H ATTTGTCTGAAGT . 60 36 83 0 . 0 0 0 0 0 OVCH1 341350 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 29628092 29628092 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OVCH1-210 NM_183378 exon14 c.C1502A p.S501X AATATTGAAGTGA . 103 70 151 0 . 0 0 0 0 0 TMTC1 83857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 29908758 29908758 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMTC1-90 NM_001193451 exon4 c.G615T p.L205F GAGCAGCAAGAAG . 82 47 95 0 . 0 0 0 0 0 KIAA1551 55196 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 32134534 32134534 + Silent SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_018169 exon4 c.A645T p.P215P ACCTCCAAAGCTA . 95 68 101 1 . 0 0 0 0 0 KIAA1551 55196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 32136907 32136907 + Silent SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_018169 exon4 c.A3018T p.T1006T AAGCACAGCTAAC . 54 36 53 0 . 0 0 0 0 0 KIF21A 55605 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 39695356 39695356 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIF21A-97 NM_001173464 exon37 c.G4857T p.V1619V CTCTCCCACTGGC . 171 126 179 0 . 0 0 0 0 0 CNTN1 1272 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 41463834 41463834 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CNTN1-1149 NM_001843 exon24 c.C3054A p.F1018L GGAATTCTGAATG . 72 49 85 0 . 0 0 0 0 0 ADAMTS20 80070 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 43821221 43821221 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADAMTS20-795 NM_025003 exon27 c.G3997T p.D1333Y TTTCATCCTGGCA . 94 56 102 0 . 0 0 0 0 0 PUS7L 83448 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 44142372 44142372 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PUS7L-91 NM_001098614 exon3 c.G951T p.A317A ACCAATCGCTTCA . 38 26 40 0 . 0 0 0 0 0 TWF1 5756 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 44190794 44190794 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TWF1-797 NM_001242397 exon9 c.G888T p.M296I TACATCCATTTGT . 58 41 91 0 . 0 0 0 0 0 DBX2 440097 broad.mit.edu;bcgsc.ca 37 12 45444412 45444412 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DBX2-90 NM_001004329 exon1 c.G299C p.G100A CGCGTTCCGTAGG . 158 70 103 1 . 0 0 0 0 0 ANO6 196527 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 45742042 45742042 + Missense_Mutation SNP G G C rs145491348 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ANO6-516 NM_001204803 exon6 c.G640C p.D214H ATGAATGATTTTT . 119 29 137 0 G|1.000;T|0.000 0 0 0 0 0 DHH 50846 ucsc.edu;bcgsc.ca 37 12 49485010 49485010 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DHH-710 NM_021044 exon2 c.C466A p.R156S TGTTGCGGTCGCG . 256 184 268 3 . 0 0 0 0 0 NCKAP5L 57701 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 50195681 50195681 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NCKAP5L-68 NM_001037806 exon6 c.A301T p.S101C GGGCACTCAGCAT . 168 117 176 0 . 0 0 0 0 0 FAM186A 121006 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 12 50746537 50746537 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM186A-68 NM_001145475 exon4 c.G4078C p.G1360R GGATCCCCAGTTC . 454 374 271 2 . 0 0 0 0 0 KRT81 3887 broad.mit.edu 37 12 52681054 52681054 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KRT81-90 NM_002281 exon7 c.C1079A p.A360D CTGAGGGCCGCCT . 98 8 81 1 . 0 0 0 0 0 KRT6C 286887 bcgsc.ca 37 12 52863507 52863507 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KRT6C-114 NM_173086 exon7 c.C1371A p.A457A ATCCAGGGCCAGC . 171 127 142 3 . 0 0 0 0 0 KRT74 121391 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 52967215 52967215 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KRT74-92 NM_175053 exon1 c.C347T p.T116I TTGACAGTGACCT . 103 49 122 0 . 0 0 0 0 0 KRT73 319101 ucsc.edu;bcgsc.ca 37 12 53012266 53012266 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KRT73-157 NM_175068 exon1 c.G43T p.G15W AGCCCCCCTTGGC . 182 125 173 3 . 0 0 0 0 0 IGFBP6 3489 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 53494882 53494882 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IGFBP6-523 NM_002178 exon3 c.C538T p.R180X GTCTACCGAGGGG . 125 84 135 0 . 0 0 0 0 0 ERBB3 2065 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 56487188 56487188 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ERBB3-1403 NM_001982 exon12 c.C1334T p.S445F TCCGATCCCTGAA . 115 27 94 0 . 0 0 0 0 0 GNS 2799 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 65122777 65122777 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GNS-514 NM_002076 exon10 c.A1159T p.N387Y TCTTATTTAGGTC . 128 72 123 0 . 0 0 0 0 0 GRIP1 23426 ucsc.edu;bcgsc.ca 37 12 66838367 66838367 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GRIP1-494 NM_001178074 exon12 c.G1528C p.A510P TACCTGCAACATC . 142 78 156 4 . 0 0 0 0 0 CAND1 55832 broad.mit.edu;mdanderson.org 37 12 67675711 67675711 + Missense_Mutation SNP G G C rs79653663 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CAND1-516 NM_018448 exon2 c.G90C p.L30F TGATTTGATGACG . 20 8 29 0 . 0 0 0 0 0 LGR5 8549 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 71972663 71972663 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LGR5-527 NM_003667 exon15 c.C1360G p.H454D GGAAATCATGCCT . 99 61 116 0 . 0 0 0 0 0 LGR5 8549 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 71978418 71978418 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LGR5-527 NM_003667 exon18 c.C2628G p.I876M CAGCATCACTTAT . 82 46 78 0 . 0 0 0 0 0 TRHDE 29953 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 72680494 72680494 + Missense_Mutation SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRHDE-93 NM_013381 exon2 c.T813G p.H271Q TACACATGCCAGA . 107 67 128 0 . 0 0 0 0 0 SLC6A15 55117 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 85255765 85255765 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC6A15-93 NM_182767 exon12 c.C1839G p.S613R TGGATAGCTCAGA . 42 18 97 0 . 0 0 0 0 0 TMPO 7112 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 98940166 98940166 + Silent SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMPO-93 NM_001032283 exon8 c.A1020G p.V340V AAGAGTAGAAAGG . 105 61 118 0 . 0 0 0 0 0 SLC5A8 160728 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 101603553 101603553 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC5A8-90 NM_145913 exon1 c.C74A p.S25X GCGGCCGAGATGA . 94 68 57 0 . 0 0 0 0 0 ALDH1L2 160428 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 105424132 105424132 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ALDH1L2-91 NM_001034173 exon21 c.C2486A p.P829H ATAATAGGCCCAA . 84 54 82 0 . 0 0 0 0 0 BTBD11 121551 broad.mit.edu;bcgsc.ca 37 12 108003971 108003971 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BTBD11-93 NM_001018072 exon5 c.G1648T p.D550Y AGGGCCGACGACT . 120 92 120 2 . 0 0 0 0 0 TRPV4 59341 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 110231758 110231758 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRPV4-94 NM_021625 exon9 c.G1561T p.G521W GGACCCCAGTGAA . 241 182 251 0 . 0 0 0 0 0 PPP1CC 5501 bcgsc.ca 37 12 111160003 111160003 + Silent SNP G G A rs1973505 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PPP1CC-1082 NM_002710 exon6 c.C819T p.C273C CTCTCCGCAATAA . 129 8 148 2 G|0.770;A|0.230 0 0 0 0 0 ACAD10 80724 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 112130583 112130583 + Missense_Mutation SNP A A C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ACAD10-92 NM_001136538 exon2 c.A70C p.T24P AAACACACCCAGC . 124 77 96 2 . 0 0 0 0 0 HECTD4 283450 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 112701980 112701980 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001109662 exon17 c.C2224G p.Q742E GATTCTGAACTGC . 103 21 109 0 . 0 0 0 0 0 RPH3A 22895 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 113304642 113304642 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RPH3A-519 NM_001143854 exon7 c.G441A p.R147R GCAGAGGGAGGTG . 133 88 123 0 . 0 0 0 0 0 TBX5 6910 ucsc.edu;bcgsc.ca 37 12 114793514 114793514 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TBX5-98 NM_000192 exon9 c.C1380A p.S460S GGCCACGGAGGTC . 172 114 163 2 . 0 0 0 0 0 TBX3 6926 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 115112157 115112157 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TBX3-93 NM_016569 exon7 c.G1583C p.G528A GCGCCCCCCATGG . 103 49 57 0 . 0 0 0 0 0 RNFT2 84900 bcgsc.ca 37 12 117274029 117274029 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001109903 exon10 c.G1142T p.G381V AAGCTGGTGACAT . 69 51 78 2 . 0 0 0 0 0 NOS1 4842 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 117768276 117768276 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NOS1-154 NM_000620 exon2 c.G599T p.G200V TTCTCCCCTCTGC . 91 49 95 1 . 0 0 0 0 0 SUDS3 64426 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 118841234 118841234 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SUDS3-90 NM_022491 exon10 c.G715T p.E239X TCTCCTGAGCACT . 50 34 41 0 . 0 0 0 0 0 SRRM4 84530 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 119594333 119594333 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SRRM4-2 NM_194286 exon13 c.C1566A p.P522P TCGGCCCAGCCCC . 205 119 176 1 . 0 0 0 0 0 CCDC60 160777 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 119926594 119926594 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CCDC60-93 NM_178499 exon5 c.C480A p.L160L TGCTCTCCACTGG . 300 218 236 0 . 0 0 0 0 0 WDR66 144406 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 122413555 122413555 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WDR66-92 NM_144668 exon19 c.C2970T p.V990V TTTTGTCATGAGA . 160 32 112 0 . 0 0 0 0 0 DNAH10 196385 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 124335466 124335466 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DNAH10-95 NM_207437 exon34 c.G5780T p.R1927L ACTCCCGCATGGG . 98 74 79 0 . 0 0 0 0 0 TMEM132B 114795 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 126135311 126135311 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMEM132B-185 NM_052907 exon7 c.C1711A p.R571S ACAGTGCGTGTCC . 257 182 241 2 . 0 0 0 0 0 POLE 5426 bcgsc.ca 37 12 133252041 133252041 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . POLE-233 NM_006231 exon12 c.A1169G p.Q390R TCCTTCTGGAAGC . 89 56 79 3 . 0 0 0 0 0 RNF17 56163 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 25363494 25363494 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RNF17-228 NM_001184993 exon8 c.G792T p.R264R TATCCGGACTTTG . 61 21 120 0 . 0 0 0 0 0 CDK8 1024 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 26923272 26923272 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CDK8-1023 NM_001260 exon3 c.G268T p.D90Y CATGCTGATAGGA . 93 33 127 0 . 0 0 0 0 0 MTUS2 23281 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 29599201 29599201 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MTUS2-218 NM_001033602 exon1 c.G396T p.Q132H CCTGCAGACCACG . 86 34 153 0 . 0 0 0 0 0 MTUS2 23281 broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 29599429 29599429 + Silent SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MTUS2-218 NM_001033602 exon1 c.A624G p.L208L GCCTCTATCCCTC . 59 26 96 1 . 0 0 0 0 0 MTUS2 23281 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 29600623 29600623 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MTUS2-218 NM_001033602 exon1 c.G1818T p.G606G CAGTGGGATCCCC . 74 23 122 0 . 0 0 0 0 0 MTUS2 23281 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 30054476 30054476 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MTUS2-218 NM_001033602 exon8 c.G3404C p.S1135T TGCTGAGCATCCG . 112 40 180 0 . 0 0 0 0 0 DCLK1 9201 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 36699966 36699966 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DCLK1-826 NM_004734 exon2 c.G309T p.Q103H CACTCCCTGGGGC . 111 31 155 0 . 0 0 0 0 0 SMAD9 4093 broad.mit.edu;bcgsc.ca;mdanderson.org 37 13 37427574 37427574 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SMAD9-414 NM_001127217 exon6 c.C1242T p.I414I CATCCGGATAGTA . 45 12 69 0 . 0 0 0 0 0 EXOSC8 11340 broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 37582275 37582275 + Missense_Mutation SNP G G T rs200992929 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EXOSC8-91 NM_181503 exon9 c.G569T p.R190I ATATTAGAACTCA . 45 6 107 0 G|1.000;A|0.000 0 0 0 0 0 FREM2 341640 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 39264618 39264618 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FREM2-100 NM_207361 exon1 c.G3137T p.G1046V GAATTGGTGGCAA . 53 21 96 0 . 0 0 0 0 0 NAA16 79612 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 41932560 41932560 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NAA16-90 NM_001110798 exon11 c.G1208T p.S403I TTGCTAGTACTCC . 50 13 100 0 . 0 0 0 0 0 ENOX1 55068 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 43896519 43896519 + Splice_Site SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ENOX1-92 NM_001242863 exon12 c.1261+1G>T . GCATTACCTGATT . 73 28 188 0 . 0 0 0 0 0 TSC22D1 8848 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 45147767 45147767 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TSC22D1-90 NM_183422 exon1 c.C2444T p.S815L TGCTGTGAAACAA . 86 28 171 0 . 0 0 0 0 0 LRCH1 23143 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 47297444 47297444 + Missense_Mutation SNP G G T rs188820612 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRCH1-91 NM_001164211 exon17 c.G1848T p.E616D GAAAGAGCTGGTG . 30 11 62 0 G|0.999;A|0.000 0 0 0 0 0 HTR2A 3356 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 47469863 47469863 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HTR2A-519 NM_000621 exon2 c.G179T p.C60F GAGAGGCACCCTT . 129 36 190 0 . 0 0 0 0 0 ITM2B 9445 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 48830474 48830474 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ITM2B-90 NM_021999 exon3 c.G408T p.E136D CCCAGAGTTTGCA . 53 12 82 0 . 0 0 0 0 0 ARL11 115761 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 50205070 50205070 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARL11-90 NM_138450 exon2 c.C487G p.P163A GGGCTGCCCGAGG . 65 26 89 1 . 0 0 0 0 0 DLEU7 220107 hgsc.bcm.edu 37 13 51417472 51417472 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_198989 exon1 c.C311T p.P104L TCCCGGGGGAAGG . 31 16 0 0 . 0 0 0 0 0 DLEU7 220107 hgsc.bcm.edu 37 13 51417535 51417535 + Missense_Mutation SNP G G A rs898861 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_198989 exon1 c.C248T p.A83V GAGTTCGCCCGCG . 9 7 0 0 G|0.789;A|0.211 0 0 0 0 0 PCDH8 5100 broad.mit.edu;bcgsc.ca 37 13 53420741 53420741 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDH8-153 NM_002590 exon1 c.C1831A p.H611N CCGGGTGCACCAG . 102 28 84 1 . 0 0 0 0 0 PCDH8 5100 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 53422274 53422274 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDH8-153 NM_002590 exon1 c.C298A p.P100T ACTGCGGGGCCTG . 68 21 20 0 . 0 0 0 0 0 OLFM4 10562 broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 53624443 53624443 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OLFM4-69 NM_006418 exon5 c.C1070A p.T357K CCAACACGATTGC . 203 54 291 1 . 0 0 0 0 0 PCDH17 27253 broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 58208469 58208469 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDH17-97 NM_001040429 exon1 c.G1789T p.V597L CTGCAGGTGCCGC . 107 32 122 1 . 0 0 0 0 0 PCDH17 27253 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 58208760 58208760 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDH17-97 NM_001040429 exon1 c.C2080G p.R694G GTACCACGGGTGA . 164 41 254 0 . 0 0 0 0 0 PCDH17 27253 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 58240856 58240856 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDH17-97 NM_001040429 exon3 c.G2686T p.D896Y GACAGTGATCAGG . 119 42 174 0 . 0 0 0 0 0 PCDH9 5101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 67205483 67205483 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDH9-96 NM_203487 exon4 c.G3199T p.G1067C CTAGACCACTGTC . 64 17 129 0 . 0 0 0 0 0 KLHL1 57626 bcgsc.ca 37 13 70681347 70681347 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KLHL1-90 NM_020866 exon1 c.485delG p.G162fs CCACATCCTTCAC . 147 43 175 1 . 0 0 0 0 0 KLHL1 57626 hgsc.bcm.edu 37 13 70681348 70681349 + Frame_Shift_Del DEL CT CT - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CT CT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KLHL1-90 NM_020866 exon1 c.483_484del p.161_162del CACATCCTTCACC . 148 0 174 0 . 0 0 0 0 0 KLHL1 57626 bcgsc.ca 37 13 70681349 70681349 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KLHL1-90 NM_020866 exon1 c.A483T p.E161D ACATCCTTCACCT . 147 43 175 1 . 0 0 0 0 0 TBC1D4 9882 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 75915278 75915278 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TBC1D4-95 NM_014832 exon7 c.A1594G p.I532V CCCCGATGTGCAC . 106 28 133 0 . 0 0 0 0 0 IRG1 730249 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 13 77531719 77531719 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001258406 exon4 c.G1033T p.V345F ATCACTGTCCCCT . 73 17 78 0 . 0 0 0 0 0 MYCBP2 23077 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 77870754 77870754 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYCBP2-236 NM_015057 exon2 c.A358G p.K120E TCACTTTTGATTT . 13 4 22 0 . 0 0 0 0 0 EDNRB 1910 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 78492683 78492683 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EDNRB-522 NM_001201397 exon2 c.G296C p.G99A GCGCGTCCGCACA . 79 24 93 0 . 0 0 0 0 0 POU4F1 5457 bcgsc.ca;mdanderson.org 37 13 79176516 79176516 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . POU4F1-515 NM_006237 exon2 c.G294T p.L98L GTGCGCCAGAGGC . 54 21 39 1 . 0 0 0 0 0 RNF219 79596 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 79191112 79191112 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RNF219-135 NM_024546 exon6 c.G784T p.E262X TCTCTTCACTTGA . 73 18 107 0 . 0 0 0 0 0 SLITRK1 114798 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 84455469 84455469 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLITRK1-94 NM_052910 exon1 c.C174A p.S58S AAACTGGGAAGTC . 37 9 70 0 . 0 0 0 0 0 SLITRK6 84189 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 86368998 86368998 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLITRK6-137 NM_032229 exon2 c.C1646A p.P549H TGCCCGGGGGAAG . 84 14 132 0 . 0 0 0 0 0 GPC5 2262 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 13 92051320 92051320 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPC5-519 NM_004466 exon1 c.C20A p.P7H CCTGGCCCGTGGG . 115 26 100 0 . 0 0 0 0 0 GPC5 2262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 92345810 92345810 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPC5-519 NM_004466 exon3 c.G695T p.G232V ATCTGGGCATTGA . 70 21 125 0 . 0 0 0 0 0 DCT 1638 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 95121092 95121092 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DCT-94 NM_001129889 exon2 c.G503T p.G168V TTGGGCCCAAGCA . 69 17 101 0 . 0 0 0 0 0 HS6ST3 266722 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 96743551 96743551 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HS6ST3-92 NM_153456 exon1 c.C435G p.R145R AGGGCGCGACGTG . 122 38 183 0 . 0 0 0 0 0 GPR183 1880 broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 99948095 99948095 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR183-522 NM_004951 exon2 c.C305G p.A102G CACAAGGCATCTC . 129 37 218 2 . 0 0 0 0 0 NALCN 259232 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 101736110 101736110 + Missense_Mutation SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NALCN-167 NM_052867 exon31 c.A3535C p.K1179Q GGCTCTTCAGGTC . 30 7 73 0 . 0 0 0 0 0 NALCN 259232 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 101755576 101755576 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NALCN-167 NM_052867 exon26 c.C3004A p.Q1002K TCATCTGGGGCAC . 51 16 65 0 . 0 0 0 0 0 NALCN 259232 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 101757250 101757250 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NALCN-167 NM_052867 exon23 c.A2631T p.Q877H CTAAAGTTGATGG . 87 31 95 1 . 0 0 0 0 0 NALCN 259232 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 102029346 102029346 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NALCN-167 NM_052867 exon5 c.G437T p.R146L AGTGGCCGTGGAA . 91 19 103 0 . 0 0 0 0 0 TPP2 7174 bcgsc.ca 37 13 103268776 103268776 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TPP2-92 NM_003291 exon4 c.G421T p.V141F GACCCTGTTCACA . 46 4 48 0 . 0 0 0 0 0 CCDC168 643677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 103388356 103388356 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001146197 exon4 c.C14691A p.P4897P CCTTTTGGGGAGT . 68 20 83 0 . 0 0 0 0 0 CCDC168 643677 broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 103388670 103388670 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001146197 exon4 c.C14377A p.H4793N GACTGTGCTCAGT . 145 39 219 1 . 0 0 0 0 0 CCDC168 643677 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 13 103391132 103391132 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001146197 exon4 c.C11915A p.P3972H GCAAAAGGTTTGC . 24 4 65 0 . 0 0 0 0 0 CCDC168 643677 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 13 103398334 103398334 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001146197 exon4 c.C4713T p.G1571G TATTAAGCCATCG . 87 12 118 0 . 0 0 0 0 0 SLC10A2 6555 ucsc.edu;bcgsc.ca 37 13 103701772 103701772 + Silent SNP C C T rs201412654 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC10A2-94 NM_000452 exon5 c.G786A p.T262T CATCCCCGTTTCA . 80 17 132 2 . 0 0 0 0 0 COL4A1 1282 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 110850953 110850953 + Silent SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COL4A1-654 NM_001845 exon21 c.T1146C p.G382G AGGGGCACCAGCC . 38 12 67 0 . 0 0 0 0 0 ING1 3621 hgsc.bcm.edu 37 13 111368316 111368316 + Silent SNP C C T rs9555726 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ING1-515 NM_005537 exon1 c.C526T p.L176L GCATCTCTGCTGA . 7 7 0 0 C|0.372;T|0.628 0 0 0 0 0 ATP11A 23250 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 113508734 113508734 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ATP11A-138 NM_032189 exon19 c.G2133C p.L711L GCTGCTGGAGCTG . 100 23 115 0 . 0 0 0 0 0 PCID2 55795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 113839829 113839829 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCID2-90 NM_001258212 exon8 c.G675T p.L225L GTTCACCAGAAAC . 42 9 55 0 . 0 0 0 0 0 GRK1 6011 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 114322346 114322346 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GRK1-614 NM_002929 exon1 c.G645T p.L215L CAAGCTGTATGCC . 130 36 164 1 . 0 0 0 0 0 OR11H12 440153 broad.mit.edu;bcgsc.ca 37 14 19378109 19378109 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR11H12-24 NM_001013354 exon1 c.G516C p.L172L GTTCCTGATCCCC . 584 163 605 1 . 0 0 0 0 0 OR4N2 390429 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 20296018 20296018 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR4N2-71 NM_001004723 exon1 c.C411A p.N137K CATGAACCCTAGA . 147 68 195 1 . 0 0 0 0 0 OR11G2 390439 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 20665906 20665906 + Missense_Mutation SNP C C A rs77997988 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR11G2-70 NM_001005503 exon1 c.C412A p.Q138K TTCCTCCAGTTCT . 67 38 107 0 . 0 0 0 0 0 TEP1 7011 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 20845643 20845643 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TEP1-95 NM_007110 exon41 c.G5884T p.G1962W GAGCCCCCTGGGA . 54 30 81 0 . 0 0 0 0 0 MYH6 4624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 23876252 23876252 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYH6-94 NM_002471 exon3 c.G181C p.A61P TTTCAGCAATGAC . 87 59 92 0 . 0 0 0 0 0 RNF31 55072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 24617561 24617561 + Missense_Mutation SNP A A C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RNF31-90 NM_017999 exon3 c.A434C p.Q145P AGCACCAGGTTGC . 115 57 195 0 . 0 0 0 0 0 DTD2 112487 broad.mit.edu;bcgsc.ca;mdanderson.org 37 14 31926518 31926518 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_080664 exon1 c.G82A p.D28N CCCCATCGGCTGG . 304 75 75 1 . 0 0 0 0 0 EAPP 55837 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 35005309 35005309 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EAPP-91 NM_018453 exon2 c.C247T p.L83L TTCCCAGAGAGGA . 25 17 36 0 . 0 0 0 0 0 FAM177A1 283635 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 35548204 35548204 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM177A1-226 NM_173607 exon4 c.G478C p.D160H GCCATTGATGAAT . 60 16 96 0 . 0 0 0 0 0 LRFN5 145581 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 42356483 42356483 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRFN5-97 NM_152447 exon3 c.G655C p.A219P CAGCGAGCTCAGG . 102 57 121 0 . 0 0 0 0 0 LRFN5 145581 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 42356830 42356830 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRFN5-97 NM_152447 exon3 c.T1002A p.S334S AAGATCTCTGGTG . 78 37 130 0 . 0 0 0 0 0 FSCB 84075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 44974595 44974595 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FSCB-587 NM_032135 exon1 c.G1596T p.E532D AGGAGCCTCTATA . 35 22 31 0 . 0 0 0 0 0 MIS18BP1 55320 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 45693590 45693590 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MIS18BP1-90 NM_018353 exon11 c.G2200A p.E734K TTTGTTCCTTTTC . 41 24 47 0 . 0 0 0 0 0 MIS18BP1 55320 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 45711445 45711445 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MIS18BP1-90 NM_018353 exon4 c.G935C p.G312A GAAGTCCCTTCTG . 57 28 64 0 . 0 0 0 0 0 MDGA2 161357 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 47342647 47342647 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MDGA2-95 NM_001113498 exon14 c.G2741C p.G914A TGTTGTCCATACA . 33 16 71 0 . 0 0 0 0 0 ABHD12B 145447 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 51355545 51355545 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ABHD12B-153 NM_001206673 exon9 c.G704A p.C235Y AAGGATGCCCAGT . 31 18 55 0 . 0 0 0 0 0 NID2 22795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 52485862 52485862 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NID2-158 NM_007361 exon14 c.G2945T p.W982L ACGCACCAGCAGA . 177 111 180 1 . 0 0 0 0 0 NID2 22795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 52486816 52486816 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NID2-158 NM_007361 exon13 c.C2755A p.Q919K CGGGTTGACAACG . 124 68 173 0 . 0 0 0 0 0 ARID4A 5926 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 58831980 58831980 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARID4A-231 NM_002892 exon20 c.G3173C p.C1058S GTACCTGTAGTAT . 81 52 119 0 . 0 0 0 0 0 C14orf39 317761 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 14 60933637 60933637 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C14orf39-94 NM_174978 exon10 c.C893A p.A298E ATACCTGCAACTC . 17 10 17 0 . 0 0 0 0 0 SYNE2 23224 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 64691758 64691758 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SYNE2-164 NM_182914 exon115 c.G20511T p.E6837D GACAGAGAGCAGG . 463 138 162 2 . 0 0 0 0 0 AKAP5 9495 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 64935226 64935226 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AKAP5-226 NM_004857 exon2 c.G114C p.K38N CTTCAAGAGAAGA . 276 41 188 0 . 0 0 0 0 0 PLEKHG3 26030 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 65209938 65209938 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLEKHG3-91 NM_015549 exon15 c.C3009G p.S1003S TGCCTCCCGCGAT . 111 24 13 0 . 0 0 0 0 0 VTI1B 10490 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 68120200 68120200 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . VTI1B-90 NM_006370 exon5 c.G556T p.E186X AGTTTTCACTTGT . 50 8 65 0 . 0 0 0 0 0 SLC8A3 6547 ucsc.edu;bcgsc.ca 37 14 70515629 70515629 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC8A3-225 NM_183002 exon7 c.C2262G p.G754G GGCCCAGCCGTGG . 131 85 128 2 . 0 0 0 0 0 SLC8A3 6547 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 70634023 70634023 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC8A3-225 NM_183002 exon2 c.G1117T p.A373S CTGCTGCATGTTT . 131 87 169 0 . 0 0 0 0 0 ADAM21 8747 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 70926120 70926120 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADAM21-92 NM_003813 exon2 c.T1904A p.L635H TCTGCCTTCCTGA . 397 180 435 1 . 0 0 0 0 0 ADAM20 8748 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 70990144 70990144 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADAM20-226 NM_003814 exon2 c.G1481T p.G494V GCAGCCCCAGGAT . 120 43 97 0 . 0 0 0 0 0 SIPA1L1 26037 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 72128143 72128143 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SIPA1L1-156 NM_015556 exon7 c.C2214A p.I738I CGTCATCGTCAGG . 52 35 76 1 . 0 0 0 0 0 PAPLN 89932 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 73711367 73711367 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PAPLN-70 NM_173462 exon3 c.C70A p.R24R GTGAGGCGGCAGA . 140 85 122 0 . 0 0 0 0 0 NUMB 8650 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 73750814 73750814 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NUMB-1062 NM_001005744 exon10 c.G924A p.K308K ATCAGTCTTCCTC . 187 41 195 0 . 0 0 0 0 0 LTBP2 4053 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 75018960 75018960 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LTBP2-92 NM_000428 exon6 c.C1329T p.S443S GGGGCGGGACCCC . 168 122 134 2 . 0 0 0 0 0 TTLL5 23093 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 76149969 76149969 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTLL5-92 NM_015072 exon5 c.C341T p.S114F CCCTCTCTGAAGC . 122 28 121 0 . 0 0 0 0 0 IRF2BPL 64207 broad.mit.edu 37 14 77493762 77493767 + In_Frame_Del DEL TGCTGC TGCTGC - rs71125518 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IRF2BPL-90 NM_024496 exon1 c.369_374del p.123_125del TGTTGTTGCTGCT . 18 9 23 0 CTG|1.000;|0.000 0 0 0 0 0 NRXN3 9369 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 79175583 79175583 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NRXN3-587 NM_004796 exon4 c.C126T p.I42I TGACATCCGTCTG . 62 36 89 1 . 0 0 0 0 0 PTPN21 11099 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 88971713 88971713 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PTPN21-230 NM_007039 exon5 c.G451T p.D151Y CAAAATCCGCTAT . 123 8 153 0 . 0 0 0 0 0 SERPINA4 5267 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 95030148 95030148 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SERPINA4-230 NM_006215 exon2 c.C329A p.T110N ACCTCACCGAGCT . 77 35 72 1 . 0 0 0 0 0 SERPINA4 5267 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 95030149 95030149 + Silent SNP C C G rs141308668 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SERPINA4-230 NM_006215 exon2 c.C330G p.T110T CCTCACCGAGCTG . 78 36 72 0 C|1.000;T|0.000 0 0 0 0 0 SERPINA5 5104 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 95054239 95054239 + Silent SNP G G A rs146244413 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SERPINA5-652 NM_000624 exon3 c.G540A p.T180T GCAAACGAAGGGC . 353 233 403 1 G|0.999;A|0.001 0 0 0 0 0 SYNE3 161176 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 95916424 95916424 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_152592 exon7 c.G1293A p.A431A CAGCCTCGCGCTC . 179 36 120 0 . 0 0 0 0 0 ATG2B 55102 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 96813577 96813577 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ATG2B-93 NM_018036 exon2 c.G264T p.Q88H ATTATCCTGCAGT . 71 46 97 0 . 0 0 0 0 0 PAPOLA 10914 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 97029218 97029218 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PAPOLA-68 NM_032632 exon21 c.G2130C p.L710L TTCTCTGTTGGCC . 25 13 38 0 . 0 0 0 0 0 HHIPL1 84439 hgsc.bcm.edu 37 14 100141689 100141689 + Missense_Mutation SNP T T C rs7158073 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HHIPL1-70 NM_001127258 exon9 c.T2075C p.V692A TGTTCGTGGGCGG . 29 4 1 0 T|0.478;C|0.522 0 0 0 0 0 RTL1 388015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 101351118 101351118 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RTL1-46 NM_001134888 exon1 c.A8G p.E3G GAGGGTTCTATCA . 100 66 99 0 . 0 0 0 0 0 DIO3 1735 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 102028262 102028262 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DIO3-494 . . . . TCTGCCCGACGGC . 114 39 76 0 . 0 0 0 0 0 EXOC3L4 91828 hgsc.bcm.edu 37 14 103568729 103568729 + Silent SNP A A G rs10142200 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EXOC3L4-23 NM_001077594 exon2 c.A669G p.E223E GGAGGAAGCCCAC . 7 7 0 0 A|0.486;G|0.514 0 0 0 0 0 MARK3 4140 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 103931918 103931918 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MARK3-360 NM_001128919 exon8 c.G565A p.D189N GATGCCGATATGA . 55 13 56 0 . 0 0 0 0 0 CKB 1152 hgsc.bcm.edu 37 14 103988180 103988180 + Silent SNP G G T rs1136165 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CKB-115 NM_001823 exon4 c.C456A p.R152R GATGGCGCGGCGC . 6 6 0 0 G|0.327;T|0.673 0 0 0 0 0 TDRD9 122402 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 104470600 104470600 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TDRD9-70 NM_153046 exon14 c.G1509T p.G503G TAGAGGGTACTGT . 135 107 111 2 . 0 0 0 0 0 ASPG 374569 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 104561948 104561948 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001080464 exon4 c.C384T p.F128F GTCCTTCATGCTG . 145 28 140 1 . 0 0 0 0 0 KIF26A 26153 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 104641745 104641745 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIF26A-24 NM_015656 exon12 c.G2620A p.G874R GCCCGAGGGGGCC . 120 26 22 0 . 0 0 0 0 0 KIF26A 26153 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 104641876 104641876 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIF26A-24 NM_015656 exon12 c.C2751T p.A917A CAAGGCCATTGTC . 62 11 32 0 . 0 0 0 0 0 AHNAK2 113146 broad.mit.edu;bcgsc.ca 37 14 105418991 105418991 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AHNAK2-47 NM_138420 exon7 c.G2797T p.G933C GGGGGCCCTTGAG . 226 146 204 2 . 0 0 0 0 0 OR4M2 390538 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 22368578 22368578 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR4M2-69 NM_001004719 exon1 c.G3T p.M1I AGAAATGGAAACT . 81 11 99 0 . 0 0 0 0 0 OR4M2 390538 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 22368613 22368613 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR4M2-69 NM_001004719 exon1 c.T38C p.V13A AATTTGTTCTCAC . 133 34 176 0 . 0 0 0 0 0 OR4M2 390538 ucsc.edu;bcgsc.ca 37 15 22369084 22369084 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR4M2-69 NM_001004719 exon1 c.G509T p.G170V TCTGTGGGCCCAA . 576 118 610 3 . 0 0 0 0 0 OR4N4 283694 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 22382866 22382866 + Missense_Mutation SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR4N4-73 NM_001005241 exon1 c.T394G p.C132G CTGCACTGTTCAA . 271 78 290 0 . 0 0 0 0 0 OR4N3P 390539 hgsc.bcm.edu;bcgsc.ca 37 15 22414205 22414205 + RNA DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . . . . . TATATTCTTCATG . 298 65 262 0 . 0 0 0 0 0 GOLGA6L1 283767 broad.mit.edu;mdanderson.org 37 15 22743430 22743430 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001001413 exon8 c.G1815A p.E605E GCAGGAGGAGATG . 22 6 11 0 . 0 0 0 0 0 TUBGCP5 114791 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 22855078 22855078 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TUBGCP5-91 NM_052903 exon13 c.G1539T p.T513T TTACACGTTATAT . 273 32 177 0 . 0 0 0 0 0 MAGEL2 54551 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 23889842 23889842 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_019066 exon1 c.C3048A p.P1016P AGACAAGGGCTGT . 175 30 171 1 . 0 0 0 0 0 GABRB3 2562 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 26866612 26866612 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GABRB3-518 NM_021912 exon4 c.C310G p.L104V GGTTGAGAGGGAT . 74 10 85 0 . 0 0 0 0 0 GABRA5 2558 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 27182468 27182468 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GABRA5-91 NM_001165037 exon8 c.C717A p.T239T CAGCACCAGCACA . 154 86 118 0 . 0 0 0 0 0 GABRG3 2567 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 27572125 27572125 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001270873 exon4 c.C440A p.P147H CCACACCCAATCA . 106 46 116 0 . 0 0 0 0 0 APBA2 321 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 29346205 29346205 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . APBA2-90 NM_005503 exon3 c.G118T p.G40C TTGGAGGGCTATG . 289 74 234 0 . 0 0 0 0 0 APBA2 321 broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 29400511 29400511 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . APBA2-90 NM_005503 exon12 c.C1956T p.V652V CATTGTCAGCTGT . 123 16 120 1 . 0 0 0 0 0 TRPM1 4308 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 31295069 31295069 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRPM1-94 NM_001252020 exon27 c.G3885T p.T1295T AAGATACGTTGCC . 68 36 78 0 . 0 0 0 0 0 OTUD7A 161725 ucsc.edu;bcgsc.ca 37 15 31776739 31776739 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OTUD7A-502 NM_130901 exon11 c.G1539C p.V513V GTTGGCCACGGAG . 66 24 62 2 . 0 0 0 0 0 FMN1 342184 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 33300216 33300216 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FMN1-23 NM_001103184 exon3 c.A1553T p.Q518L CATACCTGCAGGT . 65 26 43 0 . 0 0 0 0 0 RYR3 6263 broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 33944994 33944994 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RYR3-520 NM_001243996 exon32 c.C4218A p.N1406K GAGCAACGTGGAC . 316 66 330 2 . 0 0 0 0 0 RYR3 6263 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 34111987 34111987 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RYR3-520 NM_001036 exon77 c.C10737A p.S3579S CACCTCCTATTCC . 103 26 90 0 . 0 0 0 0 0 CHRM5 1133 ucsc.edu;bcgsc.ca 37 15 34355202 34355202 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CHRM5-91 NM_012125 exon3 c.G284T p.R95L TGGGACGCTGGGC . 190 78 181 2 . 0 0 0 0 0 GPR176 11245 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 40094026 40094026 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR176-519 NM_007223 exon3 c.G855T p.L285L GACGACCAGGGTG . 149 40 159 0 . 0 0 0 0 0 DISP2 85455 hgsc.bcm.edu 37 15 40660192 40660192 + Silent SNP C C T rs8040755 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DISP2-92 NM_033510 exon8 c.C1879T p.L627L GCTGTGCTGGTGC . 19 16 1 0 C|0.941;T|0.059 0 0 0 0 0 INO80 54617 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 41272438 41272438 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . INO80-72 NM_017553 exon36 c.C4654T p.P1552S CAGAGGGGTTGGT . 70 16 67 0 . 0 0 0 0 0 MAPKBP1 23005 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 42116197 42116197 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MAPKBP1-589 NM_001128608 exon30 c.C4169T p.P1390L CACCCCCTGAGAA . 41 8 41 0 . 0 0 0 0 0 SPTBN5 51332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 42158294 42158294 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPTBN5-91 NM_016642 exon38 c.G6659T p.R2220L AAGTTCCGCCTGT . 68 11 56 0 . 0 0 0 0 0 PLA2G4D 283748 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 42364533 42364533 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLA2G4D-136 NM_178034 exon14 c.C1375T p.L459L GGGGCAGAGGGTT . 82 19 69 0 . 0 0 0 0 0 TMEM87A 25963 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 42503948 42503948 + Splice_Site SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMEM87A-91 NM_015497 exon21 c.1627-1G>C . TCGTTCCTAGGGA . 45 10 50 0 . 0 0 0 0 0 TTBK2 146057 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 43120176 43120176 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTBK2-338 NM_173500 exon6 c.G487T p.D163Y CAAAATCAAGCAT . 235 96 230 1 . 0 0 0 0 0 DUOX2 50506 broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 45405235 45405235 + Missense_Mutation SNP C C A rs200434528 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DUOX2-95 NM_014080 exon3 c.G110T p.R37L TCATAGCGCTGCA . 168 62 138 2 C|0.999;A|0.001 0 0 0 0 0 DUOXA1 90527 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 45409733 45409733 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DUOXA1-227 NM_144565 exon11 c.C1432T p.R478C TGTGGCGGGAGGT . 110 52 140 0 . 0 0 0 0 0 SLC24A5 283652 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 48431348 48431348 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC24A5-90 NM_205850 exon7 c.C1054A p.L352M TATATCCTGGTTT . 46 20 70 0 . 0 0 0 0 0 FBN1 2200 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 48802361 48802361 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FBN1-92 NM_000138 exon14 c.G1594T p.D532Y ACTCATCAATGTC . 88 16 143 0 . 0 0 0 0 0 SHC4 399694 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 49135625 49135625 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SHC4-95 NM_203349 exon10 c.G1464T p.G488G TGGGCTCCCCAGT . 158 32 152 0 . 0 0 0 0 0 DTWD1 56986 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 49926822 49926822 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DTWD1-226 NM_001144955 exon4 c.498delC p.G166fs TAGAGGCAAAAAT . 96 21 162 0 . 0 0 0 0 0 ATP8B4 79895 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 50212566 50212566 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ATP8B4-140 NM_024837 exon18 c.C1800T p.Y600Y GTCTCTGTATGCG . 116 32 101 0 . 0 0 0 0 0 TRPM7 54822 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 50897135 50897135 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRPM7-392 NM_017672 exon21 c.G2916T p.W972C CACATACCAAAAT . 134 47 182 0 . 0 0 0 0 0 TRPM7 54822 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 50941083 50941083 + Splice_Site SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRPM7-392 NM_017672 exon5 c.123-1G>T . AAACACCTAAAAG . 19 5 23 0 . 0 0 0 0 0 UNC13C 440279 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 54305438 54305438 + Missense_Mutation SNP A A C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . UNC13C-51 NM_001080534 exon1 c.A338C p.N113T GTGATAATGAGGA . 85 31 124 0 . 0 0 0 0 0 C2CD4A 145741 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 15 62359893 62359893 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C2CD4A-68 NM_207322 exon2 c.C81A p.R27R GGCCCGCGGAGCC . 77 38 34 0 . 0 0 0 0 0 TLN2 83660 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 63031744 63031744 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TLN2-573 NM_015059 exon28 c.G3885T p.Q1295H AGCTCAGGTGGGT . 155 74 128 0 . 0 0 0 0 0 LACTB 114294 hgsc.bcm.edu 37 15 63414083 63414083 + Missense_Mutation SNP A A C rs34317102 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LACTB-90 NM_171846 exon1 c.A13C p.M5L CGGCTCATGTCAG . 9 9 0 0 A|0.226;C|0.774 0 0 0 0 0 VWA9 81556 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 65884016 65884016 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001207058 exon9 c.A986T p.N329I ATGAGGTTTGATT . 107 44 96 0 . 0 0 0 0 0 NOX5 79400 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 69347714 69347714 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NOX5-136 NM_024505 exon15 c.G2040T p.L680L TGCACTGGGCAAG . 161 32 199 0 . 0 0 0 0 0 PKM 5315 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 72502105 72502105 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001206796 exon6 c.G696T p.W232C GTCCAGCCACAGG . 124 55 154 0 . 0 0 0 0 0 TBC1D2B 23102 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 78290603 78290603 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TBC1D2B-136 NM_015079 exon13 c.G2739A p.W913X TCAGCTCCAGCCG . 210 41 233 0 . 0 0 0 0 0 ADAMTS7 11173 hgsc.bcm.edu 37 15 79051801 79051801 + Missense_Mutation SNP C C A rs201472223 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADAMTS7-226 NM_014272 exon24 c.G5023T p.A1675S AGGGGGCGCCGTG . 96 28 1 0 . 0 0 0 0 0 ADAMTS7 11173 hgsc.bcm.edu 37 15 79051846 79051846 + Missense_Mutation SNP T T C rs199524707 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADAMTS7-226 NM_014272 exon24 c.A4978G p.I1660V TGCGGATGGTGGG . 109 9 25 0 . 0 0 0 0 0 RASGRF1 5923 broad.mit.edu;bcgsc.ca 37 15 79290536 79290536 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RASGRF1-662 NM_002891 exon20 c.C2916T p.N972N CTCATCGTTGGTC . 244 8 238 0 . 0 0 0 0 0 ANKRD34C 390616 broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 79585642 79585642 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001146341 exon2 c.A16T p.T6S GATGACACTGAAT . 191 80 190 1 . 0 0 0 0 0 KIAA1024 23251 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 79749156 79749156 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIAA1024-183 NM_015206 exon2 c.G667C p.E223Q GAAAACGAGTCCA . 158 41 148 0 . 0 0 0 0 0 C15orf37 283687 ucsc.edu;bcgsc.ca;mdanderson.org 37 15 80216464 80216464 + RNA SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . . . . . GGTCCGGATCTCG . 73 33 86 0 . 0 0 0 0 0 ARNT2 9915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 80767372 80767372 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARNT2-175 NM_014862 exon5 c.G430C p.E144Q ATCCTTGAAGCAG . 47 20 67 0 . 0 0 0 0 0 ARNT2 9915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 80800576 80800576 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARNT2-175 NM_014862 exon6 c.G702A p.R234R CTCGCGGCGGTCT . 128 65 137 0 . 0 0 0 0 0 ARNT2 9915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 80869292 80869292 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARNT2-175 NM_014862 exon15 c.C1599A p.S533S ACACTCCGGGAAG . 128 22 121 0 . 0 0 0 0 0 KIAA1199 57214 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 81218065 81218065 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIAA1199-93 NM_018689 exon18 c.C2389A p.R797S TGGCTGCGCGGCG . 131 61 100 0 . 0 0 0 0 0 KIAA1199 57214 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 81224296 81224296 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIAA1199-93 NM_018689 exon21 c.C2709A p.T903T GCACACCAGCGCC . 55 20 86 0 . 0 0 0 0 0 FAM154B 283726 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 82574573 82574573 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM154B-70 NM_001008226 exon3 c.C367T p.P123S TTTGTTCCTCAGG . 140 15 134 0 . 0 0 0 0 0 AKAP13 11214 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 86124843 86124843 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AKAP13-258 NM_007200 exon7 c.G3544A p.E1182K GACGATGAAGCAC . 139 22 152 0 . 0 0 0 0 0 KLHL25 64410 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 86312878 86312878 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KLHL25-92 NM_022480 exon2 c.G164T p.R55L AAGGCACGGTCGC . 213 50 210 0 . 0 0 0 0 0 AGBL1 123624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 86697774 86697774 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_152336 exon3 c.C238A p.R80S GCTCTGCGTGTGT . 94 15 87 0 . 0 0 0 0 0 AGBL1 123624 broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 86790916 86790916 + Nonsense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_152336 exon6 c.A403T p.R135X GGCCGCAGAGCAG . 176 48 183 1 . 0 0 0 0 0 AGBL1 123624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 86800211 86800211 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_152336 exon7 c.G725T p.G242V TCCCCGGGTGCAT . 117 29 102 0 . 0 0 0 0 0 NTRK3 4916 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 88423642 88423642 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NTRK3-3538 NM_001012338 exon19 c.G2193T p.M731I GGGGAGCATGGTG . 90 49 101 0 . 0 0 0 0 0 NTRK3 4916 broad.mit.edu 37 15 88678626 88678626 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NTRK3-3538 NM_001243101 exon10 c.C910A p.P304T GTGGGGGATCTGT . 45 8 47 1 . 0 0 0 0 0 ACAN 176 bcgsc.ca 37 15 89386842 89386842 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ACAN-25 NM_001135 exon6 c.C1014A p.P338P CTACCCCGACCCC . 133 57 102 3 . 0 0 0 0 0 MIR1469 100302258 bcgsc.ca;mdanderson.org 37 15 96876498 96876498 + RNA SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . . . . . CGGCGCGGGGCGC . 83 21 19 0 . 0 0 0 0 0 CERS3 204219 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 100996194 100996194 + Nonsense_Mutation SNP G G T rs139946861 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_178842 exon12 c.C903A p.Y301X GAAGATGTATGAA . 62 12 64 0 G|0.997;A|0.003 0 0 0 0 0 LRRK1 79705 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 101565124 101565124 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRRK1-602 NM_024652 exon16 c.G2184A p.L728L GGCGCTGGGGGAG . 101 46 107 0 . 0 0 0 0 0 PCSK6 5046 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 101922386 101922386 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCSK6-46 . . . . TGCGTCCACCAAA . 90 29 106 0 . 0 0 0 0 0 ARHGDIG 398 broad.mit.edu 37 16 332758 332758 + Missense_Mutation SNP A A G rs143125556 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARHGDIG-90 NM_001176 exon6 c.A622G p.T208A GACAGGACGCACC . 87 3 70 0 A|0.999;G|0.001 0 0 0 0 0 PDIA2 64714 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 335179 335179 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PDIA2-91 NM_006849 exon5 c.G774C p.L258L GCGCCTGGTCACG . 129 23 99 0 . 0 0 0 0 0 PDIA2 64714 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 335541 335541 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PDIA2-91 NM_006849 exon7 c.T957A p.N319K CGACAATGAGCAC . 172 33 164 0 . 0 0 0 0 0 SOLH 6650 broad.mit.edu 37 16 602138 602138 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SOLH-523 NM_005632 exon10 c.G2433T p.A811A CAGCGCGCCCGTG . 245 61 47 1 . 0 0 0 0 0 C16orf13 84326 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 684529 684529 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C16orf13-22 NM_001040160 exon5 c.C615G p.P205P GGCCTAGGGAGGC . 127 35 136 0 . 0 0 0 0 0 TELO2 9894 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 1551665 1551665 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TELO2-90 NM_016111 exon11 c.A1363G p.T455A TAAAGCACGTCCC . 68 29 48 0 . 0 0 0 0 0 CRAMP1L 57585 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 16 1706050 1706050 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_020825 exon9 c.G1292T p.R431L GCGGCCGGTGCAA . 146 66 54 0 . 0 0 0 0 0 ZNF598 90850 hgsc.bcm.edu 37 16 2049527 2049527 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF598-432 NM_178167 exon11 c.C2023T p.P675S GGCAGGGGCCGCC . 26 21 0 0 . 0 0 0 0 0 SLC9A3R2 9351 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 2079600 2079600 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC9A3R2-23 NM_004785 exon2 c.G231T p.K77N GATCAAGGCTGTG . 151 25 124 0 . 0 0 0 0 0 E4F1 1877 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 2284352 2284352 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . E4F1-187 NM_004424 exon10 c.A1556G p.Y519C GGCCCTACCCTTG . 355 156 262 0 . 0 0 0 0 0 SRRM2 23524 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 2816143 2816143 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SRRM2-93 NM_016333 exon11 c.A5614T p.T1872S CCAGCCACTCACC . 161 73 155 0 . 0 0 0 0 0 SRRM2 23524 hgsc.bcm.edu 37 16 2817254 2817256 + In_Frame_Del DEL TAG TAG - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 TAG TAG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SRRM2-93 NM_016333 exon11 c.6725_6727del p.2242_2243del TGAACCTAGCCAG . 106 0 115 0 . 0 0 0 0 0 SRRM2 23524 bcgsc.ca 37 16 2817256 2817256 + Missense_Mutation SNP G G A rs139489601 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SRRM2-93 NM_016333 exon11 c.G6727A p.A2243T AACCTAGCCAGCG . 108 21 116 2 G|1.000;C|0.000 0 0 0 0 0 MEFV 4210 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 3296527 3296527 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MEFV-228 NM_000243 exon6 c.C1608T p.H536H GTACCTGTGCAAG . 70 21 61 1 . 0 0 0 0 0 C16orf90 646174 hgsc.bcm.edu;mdanderson.org 37 16 3544850 3544850 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001080524 exon2 c.C74A p.P25H TGGCCGGGGCGTC . 50 22 8 0 . 0 0 0 0 0 ADCY9 115 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 4164589 4164589 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADCY9-139 NM_001116 exon2 c.G855T p.G285G GAGCAGCCCCCTG . 87 36 78 0 . 0 0 0 0 0 CIITA 4261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 11000690 11000690 + Missense_Mutation SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CIITA-226 NM_000246 exon11 c.T1341G p.F447L CGACTTTGTCTTC . 83 19 62 0 . 0 0 0 0 0 KIAA0430 9665 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 15732947 15732947 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIAA0430-90 NM_014647 exon2 c.G144C p.T48T AGTTACCGTTTGG . 86 36 139 0 . 0 0 0 0 0 XYLT1 64131 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 17228440 17228440 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . XYLT1-94 NM_022166 exon9 c.C1917G p.D639E GATGCCGTCAGGC . 96 18 78 1 . 0 0 0 0 0 C16orf62 57020 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 19628040 19628040 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C16orf62-69 NM_020314 exon14 c.G1401T p.V467V GCTGGTGGTCCAA . 162 45 140 0 . 0 0 0 0 0 GP2 2813 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 20327304 20327304 + Missense_Mutation SNP A A C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GP2-94 NM_001007240 exon10 c.T1484G p.L495R AAATCTAGAACCC . 116 57 120 1 . 0 0 0 0 0 GP2 2813 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 20331586 20331586 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GP2-94 NM_001007240 exon6 c.G865T p.E289X TTACCTCCAGAAT . 93 27 110 0 . 0 0 0 0 0 GP2 2813 bcgsc.ca 37 16 20335325 20335325 + Silent SNP G G A rs12930599 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GP2-94 NM_001502 exon3 c.C348T p.D116D GGGAGCGTCTGTC . 192 7 215 1 G|0.865;A|0.135 0 0 0 0 0 ACSM2A 123876 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 20476935 20476935 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ACSM2A-91 NM_001010845 exon4 c.C274T p.Q92X AGCCAGCAGGCAG . 443 57 400 0 . 0 0 0 0 0 HS3ST2 9956 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 16 22825984 22825984 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HS3ST2-516 NM_006043 exon1 c.G53A p.R18H GGGCGCGCAGGCT . 85 51 14 0 . 0 0 0 0 0 HS3ST2 9956 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 22926624 22926624 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HS3ST2-516 NM_006043 exon2 c.C845A p.A282D ACCCGGCCGGCGA . 138 68 138 0 . 0 0 0 0 0 ERN2 10595 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 23716290 23716290 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ERN2-322 NM_033266 exon8 c.C912G p.L304L GAGGGCGAGGAAA . 212 91 73 0 . 0 0 0 0 0 CACNG3 10368 broad.mit.edu;bcgsc.ca 37 16 24373179 24373179 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CACNG3-90 NM_006539 exon4 c.943delG p.V315fs ACGCCCGTCTGAA . 28 9 32 0 . 0 0 0 0 0 RBBP6 5930 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 24582830 24582830 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RBBP6-230 NM_006910 exon18 c.G4443T p.E1481D CAGAGAGTATTCA . 78 19 81 0 . 0 0 0 0 0 SLC5A11 115584 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 24909414 24909414 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC5A11-92 NM_052944 exon10 c.C990G p.S330R GGTCAGCCGCATC . 68 16 51 0 . 0 0 0 0 0 C16orf82 162083 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 27078584 27078584 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001145545 exon1 c.G268T p.G90W AGCAGCGGGTACG . 64 19 66 0 . 0 0 0 0 0 KIAA0556 23247 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 27709688 27709688 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIAA0556-141 NM_015202 exon9 c.G980T p.R327L CAACCCGCAAAAC . 79 16 59 0 . 0 0 0 0 0 SH2B1 25970 broad.mit.edu 37 16 28878275 28878275 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SH2B1-92 NM_001145796 exon2 c.G860T p.W287L CTCAGTGGCAGAA . 16 3 23 0 . 0 0 0 0 0 NFATC2IP 84901 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 28970367 28970367 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NFATC2IP-91 NM_032815 exon7 c.G1047T p.Q349H GCTCCAGCTCCGG . 254 92 239 0 . 0 0 0 0 0 C16orf92 146378 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 30035165 30035165 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C16orf92-68 NM_001109660 exon2 c.C248A p.A83D CTGTGGCCCAGTT . 137 72 119 0 . 0 0 0 0 0 FBXL19 54620 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 30958250 30958250 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FBXL19-661 NM_001099784 exon10 c.G1887T p.L629L GACCCTGGTGCAC . 155 39 104 1 . 0 0 0 0 0 TRIM72 493829 hgsc.bcm.edu 37 16 31235631 31235631 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRIM72-44 NM_001008274 exon7 c.A989T p.K330M TCGACAAGGCGGT . 60 12 0 0 . 0 0 0 0 0 ITGAX 3687 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 31374306 31374306 + Silent SNP C C T rs147598964 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ITGAX-229 NM_000887 exon13 c.C1410T p.D470D CAGCGACGGCAGC . 201 37 170 0 C|0.998;T|0.002 0 0 0 0 0 ARMC5 79798 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 31477303 31477303 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARMC5-24 NM_001105247 exon5 c.G1997T p.R666L TCTGCCGGTGAGT . 61 28 73 0 . 0 0 0 0 0 SHCBP1 79801 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 46637518 46637518 + Silent SNP A A C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SHCBP1-154 NM_024745 exon8 c.T1146G p.V382V AACAATAACAGTG . 334 148 282 0 . 0 0 0 0 0 ABCC12 94160 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 48134826 48134826 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ABCC12-93 NM_033226 exon21 c.G2995T p.G999C TGATGCCCAGGCC . 203 78 188 0 . 0 0 0 0 0 ABCC12 94160 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 48173122 48173122 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ABCC12-93 NM_033226 exon5 c.C783A p.P261P AGCTGTGGGCCCC . 116 22 108 0 . 0 0 0 0 0 ABCC11 85320 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 48234290 48234290 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ABCC11-95 NM_033151 exon14 c.C1979T p.P660L GACAGGGGGTCGT . 150 78 135 1 . 0 0 0 0 0 NOD2 64127 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 50744557 50744557 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NOD2-231 NM_022162 exon4 c.G735T p.T245T AGAGACGCTCTGC . 129 28 140 0 . 0 0 0 0 0 SALL1 6299 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 51173113 51173113 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SALL1-98 NM_002968 exon2 c.G3020C p.G1007A GTTTTGCCACAAA . 120 23 145 0 . 0 0 0 0 0 SALL1 6299 bcgsc.ca 37 16 51175720 51175720 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SALL1-98 NM_002968 exon2 c.G413C p.G138A GAAGTGCCGCTGC . 110 47 70 3 . 0 0 0 0 0 IRX6 79190 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 55360430 55360430 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IRX6-174 NM_024335 exon2 c.G228T p.A76A CTATGCGGCCGCT . 126 56 86 0 . 0 0 0 0 0 IRX6 79190 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 55362936 55362936 + Missense_Mutation SNP C C A rs200996745 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IRX6-174 NM_024335 exon5 c.C1046A p.P349Q AGAAACCGCGCAT . 156 31 127 0 C|0.999;T|0.000 0 0 0 0 0 CES5A 221223 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 55880508 55880508 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CES5A-94 NM_001190158 exon14 c.G1670T p.G557V CTCTGTCCGAGGC . 141 73 167 0 . 0 0 0 0 0 NUP93 9688 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 56782300 56782300 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NUP93-205 NM_014669 exon2 c.C141G p.T47T CCGTACCCTAACA . 77 32 93 0 . 0 0 0 0 0 SLC12A3 6559 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 56936360 56936360 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC12A3-155 NM_000339 exon24 c.G2823A p.E941E CAACGAGATGCGG . 157 28 146 0 . 0 0 0 0 0 CCDC135 84229 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 57732900 57732900 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CCDC135-90 NM_032269 exon3 c.C342A p.P114P CGTGCCCCTCTTC . 114 24 109 0 . 0 0 0 0 0 CCDC135 84229 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 57735916 57735916 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CCDC135-90 NM_032269 exon5 c.G573C p.T191T CAGTACGCTGCTC . 195 25 189 0 . 0 0 0 0 0 SLC38A7 55238 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 58713931 58713931 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC38A7-69 NM_018231 exon3 c.G100T p.A34S TGGGGGCTGTGTC . 80 32 85 0 . 0 0 0 0 0 GOT2 2806 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 58768113 58768113 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GOT2-91 NM_002080 exon1 c.G20T p.G7V ACGCGGCCGGAGT . 127 44 15 0 . 0 0 0 0 0 CDH8 1006 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 61851398 61851398 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CDH8-161 NM_001796 exon7 c.C1262G p.T421S CTGGAAGTGATAT . 134 53 146 0 . 0 0 0 0 0 TRADD 8717 hgsc.bcm.edu 37 16 67189373 67189373 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRADD-659 NM_003789 exon3 c.G336T p.V112V CAGCGGCACCGAG . 22 13 3 0 . 0 0 0 0 0 DPEP3 64180 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 68012505 68012505 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DPEP3-71 NM_001129758 exon3 c.C514A p.Q172K GGGACTGGCATGA . 171 37 136 1 . 0 0 0 0 0 DPEP3 64180 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 68012506 68012506 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DPEP3-71 NM_001129758 exon3 c.C513A p.C171X GGACTGGCATGAG . 170 37 136 0 . 0 0 0 0 0 SMPD3 55512 bcgsc.ca 37 16 68398924 68398924 + Silent SNP C C T rs1868158 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SMPD3-91 NM_018667 exon4 c.G1395A p.P465P ACCTTGCGGGGCA . 189 6 136 0 C|0.368;T|0.632 0 0 0 0 0 PDPR 55066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 70182454 70182454 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PDPR-135 NM_017990 exon17 c.G2050A p.E684K CCCATAGAGGTGA . 405 56 342 0 . 0 0 0 0 0 FUK 197258 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 70512517 70512517 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FUK-91 NM_145059 exon22 c.C2893T p.R965W CTGGTACGGCAAA . 65 29 49 0 . 0 0 0 0 0 PKD1L3 342372 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 71988174 71988174 + RNA SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PKD1L3-68 . . . . AACTTTTCCACAA . 113 26 97 0 . 0 0 0 0 0 PKD1L3 342372 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 72032247 72032247 + RNA SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PKD1L3-68 . . . . GGACAGGTAGGTG . 94 35 115 0 . 0 0 0 0 0 DHX38 9785 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 72144969 72144969 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DHX38-227 NM_014003 exon26 c.A3592T p.S1198C CTGGGCAGTGTCA . 104 17 36 0 . 0 0 0 0 0 ZFHX3 463 ucsc.edu;bcgsc.ca 37 16 72993272 72993272 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZFHX3-72 NM_006885 exon2 c.A773T p.K258I ACATCTTTGGATA . 116 60 135 2 . 0 0 0 0 0 ADAT1 23536 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 75637040 75637040 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADAT1-92 NM_012091 exon10 c.G1319T p.R440I AATGATCTGAAGA . 111 13 125 0 . 0 0 0 0 0 CNTNAP4 85445 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 76486501 76486501 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CNTNAP4-70 NM_138994 exon7 c.G949T p.E317X GGAGAGGAGGAGG . 64 21 92 0 . 0 0 0 0 0 CNTNAP4 85445 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 76555117 76555117 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CNTNAP4-70 NM_138994 exon15 c.G2227C p.D743H AGCGCGGATGTAT . 34 15 60 0 . 0 0 0 0 0 VAT1L 57687 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 77913114 77913114 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . VAT1L-90 NM_020927 exon6 c.C875A p.A292E GCTTTGCAAAATC . 161 30 252 1 . 0 0 0 0 0 C16orf74 404550 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 85743810 85743810 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C16orf74-22 NM_206967 exon3 c.C132A p.T44T CGTGGGGGTGGGG . 79 29 58 1 . 0 0 0 0 0 ZCCHC14 23174 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 87445728 87445728 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZCCHC14-154 NM_015144 exon12 c.A2188T p.S730C TGGAGCTGGGGGC . 59 11 58 0 . 0 0 0 0 0 ZNF469 84627 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 88494585 88494585 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001127464 exon1 c.C707G p.P236R CCTGGCCTCCCGC . 80 27 129 0 . 0 0 0 0 0 ZNF469 84627 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 16 88495049 88495049 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001127464 exon1 c.C1171A p.L391M GATGGGCTGGGGA . 94 31 79 0 . 0 0 0 0 0 ZNF469 84627 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 88502418 88502418 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001127464 exon2 c.A8456T p.K2819M GTGCCAAGGATCC . 42 12 49 0 . 0 0 0 0 0 ZFPM1 161882 hgsc.bcm.edu 37 16 88599697 88599705 + In_Frame_Del DEL AGCCTCTGG AGCCTCTGG - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 AGCCTCTGG AGCCTCTGG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZFPM1-90 NM_153813 exon10 c.1331_1339del p.444_447del GAGCGGAGCCTCT . 26 0 1 0 . 0 0 0 0 0 C16orf3 750 bcgsc.ca 37 16 90095597 90095597 + Missense_Mutation SNP T T C rs61118444 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C16orf3-90 NM_001214 exon1 c.A154G p.I52V AGGCTATGGGGCA . 122 23 70 2 T|0.361;C|0.639 0 0 0 0 0 VPS53 55275 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 505108 505108 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . VPS53-90 NM_001128159 exon12 c.C1145T p.T382I GGATTGGTAGATG . 79 22 79 0 . 0 0 0 0 0 OR1A2 26189 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 3101229 3101229 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR1A2-70 NM_012352 exon1 c.G417T p.R139R TCCACGGTCTTGT . 214 46 232 0 . 0 0 0 0 0 TRPV1 7442 broad.mit.edu;bcgsc.ca 37 17 3470249 3470249 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRPV1-23 NM_018727 exon16 c.G2380T p.V794F GGGGGACCAGGGC . 87 36 76 2 . 0 0 0 0 0 GSG2 83903 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 3628702 3628702 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GSG2-297 NM_031965 exon1 c.G1473T p.G491G GATTGGGGAAGGG . 146 27 163 0 . 0 0 0 0 0 ITGAE 3682 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 3655152 3655152 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ITGAE-161 NM_002208 exon15 c.T1685C p.L562S CGTGCCAAGGAGA . 204 54 221 0 . 0 0 0 0 0 ZZEF1 23140 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 3955316 3955316 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZZEF1-93 NM_015113 exon35 c.A5549T p.D1850V AAGTCATCGCAAA . 110 23 128 0 . 0 0 0 0 0 ZZEF1 23140 hgsc.bcm.edu;bcgsc.ca 37 17 3959640 3959640 + Splice_Site SNP C C A rs60052193 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZZEF1-93 NM_015113 exon34 c.5166-1G>T . CATTGGCTGAAAG . 56 10 55 0 . 0 0 0 0 0 ZZEF1 23140 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 3973982 3973982 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZZEF1-93 NM_015113 exon26 c.A4071T p.K1357N ACCATATTTTTGC . 56 26 56 0 . 0 0 0 0 0 SPNS3 201305 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 4351540 4351540 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPNS3-153 NM_182538 exon6 c.G712T p.G238W GGGGAGGGGGCCG . 98 42 65 0 . 0 0 0 0 0 MYBBP1A 10514 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 4453405 4453405 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYBBP1A-92 NM_014520 exon9 c.1267delG p.V423fs AGTCAACCAAGGA . 163 41 215 0 . 0 0 0 0 0 MYBBP1A 10514 hgsc.bcm.edu 37 17 4453405 4453406 + Frame_Shift_Del DEL CC CC - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYBBP1A-92 NM_014520 exon9 c.1266_1267del p.422_423del AGTCAACCAAGGA . 163 0 215 0 . 0 0 0 0 0 MYBBP1A 10514 bcgsc.ca 37 17 4453406 4453406 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYBBP1A-92 NM_014520 exon9 c.G1266T p.L422F GTCAACCAAGGAG . 161 41 214 0 . 0 0 0 0 0 KIF1C 10749 ucsc.edu;bcgsc.ca 37 17 4926821 4926821 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIF1C-92 NM_006612 exon23 c.C2687A p.S896X AAGGATCAGAGGC . 230 51 123 2 . 0 0 0 0 0 NLRP1 22861 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 5436275 5436275 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NLRP1-274 NM_001033053 exon11 c.G3175T p.E1059X AGAGTTCCACCGG . 109 41 108 0 . 0 0 0 0 0 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7578413 7578413 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TP53-70225 NM_000546 exon5 c.G517T p.V173L GCCTCACAACCTC . 176 72 159 0 . 0 0 0 0 0 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 7578534 7578534 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TP53-70225 NM_000546 exon5 c.G396C p.K132N AAACATCTTGTTG . 89 18 80 0 . 0 0 0 0 0 PER1 5187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 8053364 8053364 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PER1-723 NM_002616 exon4 c.G454C p.E152Q GGCGCTCTGGCGG . 99 28 138 0 . 0 0 0 0 0 AURKB 9212 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 8110524 8110524 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AURKB-1508 NM_004217 exon5 c.G368A p.R123H TCTCTGCGCAGCT . 93 24 75 0 . 0 0 0 0 0 PIK3R6 146850 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 8741937 8741937 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . . . . . GATCTCGCTCGAC . 75 29 76 0 . 0 0 0 0 0 USP43 124739 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 9631601 9631601 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . USP43-637 NM_153210 exon15 c.G2666T p.G889V CAGCCGGGGTGCC . 266 112 252 0 . 0 0 0 0 0 GLP2R 9340 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 9792935 9792935 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GLP2R-524 NM_004246 exon13 c.C1575A p.P525P CTGGCCCCGGGGC . 101 42 89 0 . 0 0 0 0 0 MYH13 8735 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 10227550 10227550 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYH13-6 NM_003802 exon23 c.G2723T p.R908L TCACACCGTTCCT . 93 21 74 0 . 0 0 0 0 0 MYH8 4626 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 10293878 10293878 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYH8-101 NM_002472 exon40 c.C5707A p.Q1903K CATGCTGGAGTTT . 66 13 81 0 . 0 0 0 0 0 MYH8 4626 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 10303798 10303798 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYH8-101 NM_002472 exon27 c.G3644T p.R1215L TTGACCCGCTGCA . 55 24 46 0 . 0 0 0 0 0 MYH8 4626 bcgsc.ca 37 17 10304060 10304060 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYH8-101 NM_002472 exon27 c.G3382T p.E1128X CCCTCTCTGCCTC . 30 17 33 1 . 0 0 0 0 0 MYH4 4622 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 10353829 10353829 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYH4-102 NM_017533 exon30 c.G4122T p.Q1374H CCTCCACTGGGCA . 131 20 115 0 . 0 0 0 0 0 MYH4 4622 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 10356511 10356511 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYH4-102 NM_017533 exon24 c.C3069A p.T1023T GGTCAGGGTGTTG . 162 75 224 0 . 0 0 0 0 0 MYH4 4622 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 10357111 10357111 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYH4-102 NM_017533 exon23 c.A2783G p.E928G GCTCTTTCAGTTA . 193 39 258 0 . 0 0 0 0 0 MYH4 4622 ucsc.edu;bcgsc.ca 37 17 10363404 10363404 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYH4-102 NM_017533 exon14 c.G1281C p.V427V AGCACCCACTGCA . 178 79 217 3 . 0 0 0 0 0 MYH1 4619 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 10402002 10402002 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYH1-171 NM_005963 exon30 c.G4122A p.Q1374Q CCTCCACTGGGCA . 102 37 88 0 . 0 0 0 0 0 MYH1 4619 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 10408289 10408289 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYH1-171 NM_005963 exon22 c.C2529A p.L843L TTTGAGGAGGGGT . 83 28 63 0 . 0 0 0 0 0 MYH2 4620 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 10428845 10428845 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYH2-194 NM_017534 exon32 c.T4460A p.L1487Q TTGAACAGCTCAG . 57 10 62 0 . 0 0 0 0 0 MYH3 4621 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 10535908 10535908 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYH3-95 NM_002470 exon34 c.G4841T p.R1614L TTGAGCCGGATGG . 60 27 64 0 . 0 0 0 0 0 SHISA6 388336 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 11461111 11461111 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SHISA6-67 NM_207386 exon6 c.C1146T p.H382H GCGGCACCTGCCC . 99 30 101 0 . 0 0 0 0 0 DNAH9 1770 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 11592948 11592948 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DNAH9-168 NM_001372 exon20 c.C3809A p.S1270Y TGGAATCCACTAT . 82 31 110 0 . 0 0 0 0 0 DNAH9 1770 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 11725237 11725237 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DNAH9-168 NM_001372 exon46 c.G8708C p.G2903A TCCCAGGGGAGAT . 75 21 61 0 . 0 0 0 0 0 DNAH9 1770 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 11738038 11738038 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DNAH9-168 NM_001372 exon49 c.C9330A p.V3110V TCAGGTCGTGGGT . 267 46 233 0 . 0 0 0 0 0 DNAH9 1770 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 11772530 11772530 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DNAH9-168 NM_001372 exon51 c.C10013A p.A3338D AAGAAGCCGAAGT . 36 4 50 0 . 0 0 0 0 0 MYOCD 93649 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 12656026 12656026 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYOCD-93 NM_001146312 exon10 c.C1421A p.T474N CGGACACCTTCAA . 137 30 113 0 . 0 0 0 0 0 HS3ST3A1 9955 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 13504387 13504387 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HS3ST3A1-515 NM_006042 exon1 c.C60A p.S20R GAAGATGCTGCGG . 166 42 94 0 . 0 0 0 0 0 TBC1D26 353149 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 15638662 15638662 + Splice_Site SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TBC1D26-90 . . . . TTGCAGGATGGAG . 258 63 264 0 . 0 0 0 0 0 PEMT 10400 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 17415964 17415964 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PEMT-90 NM_001267552 exon4 c.A325G p.T109A CCTGCGTGAAGCT . 179 73 113 0 . 0 0 0 0 0 RAI1 10743 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 17701546 17701546 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RAI1-91 NM_030665 exon3 c.G5284C p.D1762H CCAGCTGACCCGG . 70 13 14 0 . 0 0 0 0 0 FLII 2314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 18148680 18148680 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FLII-91 NM_002018 exon29 c.G3663C p.L1221L GGCCTTCAGGCTC . 127 57 150 0 . 0 0 0 0 0 CCDC144C 348254 broad.mit.edu;bcgsc.ca 37 17 20224817 20224817 + RNA SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . . . . . AGAGCAAGCACGG . 299 35 266 0 . 0 0 0 0 0 MAP2K3 5606 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 21201734 21201734 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MAP2K3-790 NM_145109 exon2 c.A59G p.K20R AATCCAAGAGGAA . 190 28 225 0 . 0 0 0 0 0 KCNJ18 100134444 hgsc.bcm.edu;broad.mit.edu 37 17 21318888 21318888 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001194958 exon3 c.234delC p.I78fs GGACATCCGCTGG . 484 35 379 0 . 0 0 0 0 0 KCNJ18 100134444 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 21319147 21319147 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001194958 exon3 c.C493G p.Q165E GTGGCCCAGTCCA . 267 42 206 1 . 0 0 0 0 0 KCNJ18 100134444 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 21319212 21319212 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001194958 exon3 c.G558C p.R186S GGCAAGGCCCAAG . 320 23 240 0 . 0 0 0 0 0 KCNJ18 100134444 bcgsc.ca 37 17 21319596 21319596 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001194958 exon3 c.C942A p.S314R CCGCAGCTCCTAC . 414 38 389 2 . 0 0 0 0 0 KCNJ18 100134444 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 21319910 21319910 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001194958 exon3 c.G1256T p.G419V CTGGCGGCGGGGT . 95 7 59 0 . 0 0 0 0 0 FAM27L 284123 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 21826156 21826156 + RNA SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . . . . . CCTGCAGGAGAGG . 150 64 139 1 . 0 0 0 0 0 SARM1 23098 hgsc.bcm.edu 37 17 26699121 26699121 + Missense_Mutation SNP G G C rs7212814 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_015077 exon1 c.G68C p.R23P CACGGCGGGGCGC . 8 8 0 0 G|0.001;C|0.999 0 0 0 0 0 ABHD15 116236 bcgsc.ca 37 17 27889986 27889986 + Missense_Mutation SNP T T C rs542939 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ABHD15-90 NM_198147 exon2 c.A1000G p.T334A AGTAGGTATCCCA . 81 5 114 2 T|0.268;C|0.732 0 0 0 0 0 GIT1 28964 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 27901828 27901830 + In_Frame_Del DEL GGC GGC - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 GGC GGC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GIT1-251 NM_001085454 exon21 c.2203_2205del p.735_735del CACTGGGGCGCCG . 57 10 54 0 . 0 0 0 0 0 EFCAB5 374786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 28407846 28407846 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EFCAB5-70 NM_198529 exon17 c.C3273T p.N1091N CTGGAACCAGTCC . 155 34 189 0 . 0 0 0 0 0 CPD 1362 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 28748840 28748840 + Silent SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CPD-92 NM_001304 exon4 c.A1296T p.V432V TACAGTAGTTTTA . 68 18 77 0 . 0 0 0 0 0 CRLF3 51379 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 29120477 29120477 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CRLF3-90 NM_015986 exon5 c.G817C p.V273L GAGGCACCAATGT . 111 46 120 0 . 0 0 0 0 0 SPACA3 124912 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 31322454 31322454 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPACA3-92 NM_173847 exon2 c.C62A p.P21H CTTCTCCTTCTGT . 130 20 131 0 . 0 0 0 0 0 ASIC2 40 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 31618866 31618866 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_183377 exon1 c.G268T p.V90L CCAGCACCCACAG . 69 20 39 0 . 0 0 0 0 0 UNC45B 146862 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 33498375 33498375 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . UNC45B-157 NM_173167 exon13 c.C1730A p.T577N TGGCCACCACCCT . 179 82 154 2 . 0 0 0 0 0 UNC45B 146862 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 33504573 33504573 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . UNC45B-157 NM_173167 exon17 c.G2205T p.Q735H GCTTCAGAACTAT . 79 45 63 0 . 0 0 0 0 0 SLC35G3 146861 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 33520493 33520493 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_152462 exon1 c.C834T p.H278H GGCAGGGTGGGCC . 251 53 219 0 . 0 0 0 0 0 SLFN5 162394 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 33592239 33592239 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLFN5-92 NM_144975 exon5 c.C2008T p.Q670X ATCACTCAGACAG . 184 26 221 0 . 0 0 0 0 0 SLFN13 146857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 33768243 33768243 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLFN13-91 NM_144682 exon6 c.C2065G p.Q689E CTCTCTGAGTGAT . 118 23 120 0 . 0 0 0 0 0 STARD3 10948 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 37818535 37818535 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . STARD3-90 NM_006804 exon14 c.C1171T p.L391F ATCGTGCTCAAGT . 146 46 120 0 . 0 0 0 0 0 MED24 9862 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 38179422 38179422 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MED24-187 NM_014815 exon20 c.A2212G p.M738V CGCCCATGTGCAG . 238 114 221 2 . 0 0 0 0 0 WIPF2 147179 broad.mit.edu 37 17 38430251 38430251 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WIPF2-93 NM_133264 exon6 c.G1180T p.D394Y TTCTTGGGTGAGT . 41 8 46 1 . 0 0 0 0 0 KRT20 54474 ucsc.edu 37 17 39041305 39041305 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KRT20-155 NM_019010 exon1 c.C133T p.R45C AGATGCGGATGCC . 53 9 54 1 . 0 0 0 0 0 KRTAP4-7 100132476 broad.mit.edu 37 17 39240795 39240795 + Missense_Mutation SNP A A T rs9894966 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_033061 exon1 c.A337T p.S113C CGCCCCAGCTGCT . 145 13 25 0 . 0 0 0 0 0 KRTAP9-8 83901 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 39394402 39394402 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KRTAP9-8-1 NM_031963 exon1 c.C99G p.C33W CTGCTGCCAGCCC . 94 19 110 1 . 0 0 0 0 0 KRT36 8689 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 39645883 39645883 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KRT36-90 NM_003771 exon1 c.G234T p.V78V GCTCCCCACAAAG . 118 36 105 0 . 0 0 0 0 0 KRT14 3861 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 39742633 39742633 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KRT14-91 NM_000526 exon1 c.C454G p.Q152E GCCTCTGGTACCA . 238 52 242 0 . 0 0 0 0 0 KRT16 3868 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 39766464 39766464 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KRT16-91 NM_005557 exon7 c.C1305T p.G435G GGATTGGCCAGAT . 284 57 263 0 . 0 0 0 0 0 LEPREL4 10609 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 39964251 39964251 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LEPREL4-90 NM_006455 exon5 c.G922A p.D308N GCACATCATTCAC . 199 35 213 0 . 0 0 0 0 0 ACLY 47 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 40054039 40054039 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ACLY-228 NM_001096 exon13 c.G1392T p.V464V AGGCGCCACCTCA . 70 35 66 0 . 0 0 0 0 0 GHDC 84514 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 40344460 40344460 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GHDC-90 NM_001142623 exon5 c.G688A p.G230R GCGCTCCAGGGTT . 82 39 62 0 . 0 0 0 0 0 ITGA2B 3674 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 42452028 42452028 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ITGA2B-228 NM_000419 exon28 c.A2942T p.Q981L CTCACCTGAGCTT . 94 18 96 1 . 0 0 0 0 0 ADAM11 4185 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 42847371 42847371 + Nonsense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADAM11-227 NM_002390 exon4 c.C336G p.Y112X GCAATACGTGGAG . 144 24 103 0 . 0 0 0 0 0 KANSL1 284058 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 44117207 44117207 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001193466 exon8 c.G2064T p.Q688H CTGCCACTGAGAT . 95 20 93 0 . 0 0 0 0 0 WNT3 7473 broad.mit.edu;ucsc.edu 37 17 44846126 44846126 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WNT3-522 NM_030753 exon4 c.G628T p.A210S ACAGCCCGTGGCA . 125 22 120 2 . 0 0 0 0 0 OSBPL7 114881 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 45894628 45894628 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OSBPL7-68 NM_145798 exon8 c.A696T p.T232T CTGGTGTGTGGGG . 33 18 63 0 . 0 0 0 0 0 IGF2BP1 10642 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 47121377 47121377 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IGF2BP1-226 NM_006546 exon11 c.G1249T p.V417L CAGGCAGTGGGCG . 115 56 116 1 . 0 0 0 0 0 NGFR 4804 hgsc.bcm.edu 37 17 47584004 47584004 + Silent SNP C C T rs116077510 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NGFR-947 NM_002507 exon3 c.C552T p.A184A CTGGGCCGACGCC . 63 44 3 0 C|0.969;T|0.031 0 0 0 0 0 DLX3 1747 broad.mit.edu;bcgsc.ca 37 17 48068892 48068892 + Missense_Mutation SNP C C A rs148713638 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DLX3-90 NM_005220 exon3 c.G853T p.A285S ACACAGCCCCAGG . 21 8 27 0 C|1.000;T|0.000 0 0 0 0 0 ITGA3 3675 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 48154781 48154781 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ITGA3-229 NM_005501 exon16 c.G2109T p.E703D TTGCGAGCTGGGG . 135 25 136 0 . 0 0 0 0 0 SGCA 6442 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 48246526 48246526 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SGCA-92 NM_000023 exon6 c.G658T p.A220S AGCCACGCCCGCT . 59 28 72 0 . 0 0 0 0 0 CACNA1G 8913 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 48677192 48677192 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CACNA1G-67 NM_001256360 exon17 c.G3662A p.G1221E TGGATGGGGATGA . 91 38 61 0 . 0 0 0 0 0 CACNA1G 8913 bcgsc.ca 37 17 48703752 48703752 + Silent SNP T T C rs739925 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CACNA1G-67 NM_018896 exon38 c.T6774C p.P2258P CCGGCCTACGTCC . 119 6 147 1 T|0.144;G|0.286 0 0 0 0 0 KIF2B 84643 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 51900753 51900753 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIF2B-98 NM_032559 exon1 c.C359G p.P120R TGATCCCCCAGAA . 64 36 75 0 . 0 0 0 0 0 KIF2B 84643 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 51900846 51900846 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIF2B-98 NM_032559 exon1 c.452delG p.W151fs GCCTCTGGGAAAT . 75 29 71 0 . 0 0 0 0 0 TOM1L1 10040 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 53014522 53014522 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TOM1L1-91 NM_005486 exon10 c.G968T p.S323I GTCCCAGTCCCCG . 32 14 39 0 . 0 0 0 0 0 NOG 9241 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 54671840 54671840 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NOG-90 NM_005450 exon1 c.G256T p.D86Y CCCGAGGACCGGC . 68 17 17 0 . 0 0 0 0 0 LPO 4025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 56326518 56326518 + Silent SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LPO-91 NM_006151 exon5 c.T423C p.I141I CACCATTACGGGA . 69 18 68 0 . 0 0 0 0 0 MTMR4 9110 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 56570286 56570286 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MTMR4-91 NM_004687 exon17 c.G3238T p.D1080Y CAGTATCACTGCC . 213 33 262 0 . 0 0 0 0 0 MTMR4 9110 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 56570288 56570288 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MTMR4-91 NM_004687 exon17 c.G3236T p.S1079I GTATCACTGCCAT . 209 33 263 0 . 0 0 0 0 0 SEPT4 5414 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 56598641 56598641 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SEPT4-68 NM_001256782 exon10 c.G1133C p.R378P TAGAGTCGACCCC . 138 33 160 0 . 0 0 0 0 0 TEX14 56155 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 56676889 56676889 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TEX14-810 NM_001201457 exon14 c.A1835T p.E612V CTGGCCTCTTCTG . 105 51 69 0 . 0 0 0 0 0 HEATR6 63897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 58137396 58137396 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HEATR6-227 NM_022070 exon10 c.C1478G p.S493C GCAACAGAAAGAA . 95 15 99 0 . 0 0 0 0 0 NACA2 342538 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 59668146 59668146 + Silent SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NACA2-91 NM_199290 exon1 c.T396A p.S132S TTGCTGAGATAAA . 120 75 116 0 . 0 0 0 0 0 EFCAB3 146779 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 60484029 60484029 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EFCAB3-227 NM_001144933 exon9 c.T833A p.L278H AAGAGCTCAAGAG . 64 24 69 0 . 0 0 0 0 0 FTSJ3 117246 bcgsc.ca 37 17 61903965 61903965 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FTSJ3-91 NM_017647 exon3 c.C135A p.A45A GGCTCGGGCTTTC . 55 4 58 1 . 0 0 0 0 0 GH2 2689 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 61958131 61958131 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GH2-93 NM_022557 exon4 c.G457T p.V153L CCCTCACCCACAT . 163 32 180 0 . 0 0 0 0 0 ABCA6 23460 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 67094069 67094069 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ABCA6-159 NM_080284 exon23 c.G3112T p.D1038Y TGTAATCACTGAT . 17 7 26 0 . 0 0 0 0 0 KCNJ2 3759 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 68171793 68171793 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KCNJ2-90 NM_000891 exon2 c.G613T p.D205Y ATGAGAGACGGCA . 189 95 176 1 . 0 0 0 0 0 SDK2 54549 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 71334923 71334923 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SDK2-24 NM_001144952 exon45 c.G6322T p.G2108C GCTCACCCGAGTC . 174 41 187 0 . 0 0 0 0 0 GPR142 350383 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 72368353 72368353 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR142-93 NM_181790 exon4 c.G1003T p.A335S AACTCGGCCATCA . 205 82 170 2 . 0 0 0 0 0 CD300LB 124599 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 72522169 72522169 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CD300LB-91 NM_174892 exon2 c.G199T p.G67W GGGACCCCTGCTC . 81 43 55 0 . 0 0 0 0 0 CD300E 342510 ucsc.edu;bcgsc.ca 37 17 72613500 72613500 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CD300E-156 NM_181449 exon2 c.T145C p.W49R GGCACCAGTACTT . 123 56 143 2 . 0 0 0 0 0 RAB37 326624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 72725483 72725483 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RAB37-230 NM_175738 exon2 c.C161T p.A54V TCTCGGCCACTGT . 183 35 175 0 . 0 0 0 0 0 FADS6 283985 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 72875688 72875688 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FADS6-22 NM_178128 exon5 c.G752T p.R251L TTGTCCCGGGAGA . 178 46 183 1 . 0 0 0 0 0 OTOP2 92736 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 72926856 72926856 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OTOP2-134 NM_178160 exon6 c.G1126C p.A376P GGTGCCGCCCTGG . 179 42 186 0 . 0 0 0 0 0 SLC16A5 9121 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 73096274 73096274 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC16A5-90 NM_001271765 exon5 c.C516T p.F172F TACCTTCCTTGTC . 139 61 129 0 . 0 0 0 0 0 TRIM47 91107 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 73871533 73871533 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRIM47-659 NM_033452 exon5 c.C1224G p.L408L ACTCTCGAGGTCT . 95 34 114 0 . 0 0 0 0 0 UBE2O 63893 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 74392628 74392628 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . UBE2O-272 NM_022066 exon14 c.G2390T p.G797V ATCAGCCCGGCCA . 46 15 48 0 . 0 0 0 0 0 CBX4 8535 broad.mit.edu 37 17 77807925 77807925 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CBX4-228 NM_003655 exon5 c.G1516T p.A506S CCGCCGCCACCGC . 86 51 20 1 . 0 0 0 0 0 GAA 2548 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 78091491 78091491 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GAA-91 NM_001079803 exon18 c.G2424T p.P808P GCTGCCGGCCCCC . 172 40 125 1 . 0 0 0 0 0 BAHCC1 57597 broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 79428055 79428055 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BAHCC1-23 . . . . GAACCTCTTCCAG . 130 34 28 0 . 0 0 0 0 0 MYADML2 255275 bcgsc.ca 37 17 79898737 79898737 + Missense_Mutation SNP T T C rs181984777 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYADML2-68 NM_001145113 exon3 c.A881G p.D294G GCGAGGTCAACGA . 210 6 186 1 T|0.996;C|0.004 0 0 0 0 0 HEXDC 284004 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 80393626 80393626 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HEXDC-92 NM_173620 exon6 c.C509T p.T170M ACAGCACGGGGAA . 172 68 69 1 . 0 0 0 0 0 COLEC12 81035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 321761 321761 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COLEC12-92 NM_130386 exon9 c.C2110A p.P704T CTCCTGGCCCATG . 57 30 60 0 . 0 0 0 0 0 CLUL1 27098 broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 627305 627305 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CLUL1-92 NM_199167 exon5 c.A632G p.Q211R TTGACCAGACTTT . 128 57 147 1 . 0 0 0 0 0 MYOM1 8736 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 3067394 3067394 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYOM1-94 NM_003803 exon38 c.G4924T p.G1642C ATTTGCCCGAGTC . 166 39 126 0 . 0 0 0 0 0 C18orf42 642597 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 5145576 5145576 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001145194 exon2 c.G195C p.K65N TTCGTGCTTCTTG . 196 43 221 0 . 0 0 0 0 0 LAMA1 284217 broad.mit.edu;bcgsc.ca 37 18 6986199 6986199 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LAMA1-149 NM_005559 exon37 c.G5316C p.E1772D CTTTGCCTCAGCT . 90 31 87 2 . 0 0 0 0 0 ANKRD12 23253 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 9258888 9258888 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ANKRD12-92 NM_015208 exon9 c.C5623G p.L1875V TCATATCTCCTGG . 164 45 177 0 . 0 0 0 0 0 TXNDC2 84203 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 9886692 9886692 + Silent SNP G G T rs114777727 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TXNDC2-92 NM_001098529 exon2 c.G216T p.T72T CCACACGTTCCAC . 98 46 109 0 G|0.996;A|0.004 0 0 0 0 0 CIDEA 1149 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 12277152 12277152 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CIDEA-91 NM_001279 exon5 c.C543A p.A181A CTCCGCCCAGGTG . 132 63 140 0 . 0 0 0 0 0 PTPN2 5771 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 12817252 12817252 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PTPN2-652 NM_001207013 exon7 c.G677T p.G226V AAGGAGCCAGATT . 203 93 204 0 . 0 0 0 0 0 POTEC 388468 broad.mit.edu;bcgsc.ca 37 18 14533178 14533178 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . POTEC-3 NM_001137671 exon5 c.G937A p.V313I AACATACAGCAAG . 530 194 649 2 . 0 0 0 0 0 ANKRD30B 374860 broad.mit.edu;bcgsc.ca;mdanderson.org 37 18 14748439 14748439 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ANKRD30B-24 NM_001145029 exon1 c.C21A p.A7A AGCTGCCGCTGGC . 94 27 59 1 . 0 0 0 0 0 ANKRD30B 374860 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 14787090 14787090 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ANKRD30B-24 NM_001145029 exon15 c.G1725T p.W575C TTCTTGGGATTCT . 132 52 154 0 . 0 0 0 0 0 ANKRD30B 374860 broad.mit.edu;bcgsc.ca;mdanderson.org 37 18 14851981 14851981 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ANKRD30B-24 NM_001145029 exon36 c.G3681A p.E1227E CAATGAGGTGCTC . 173 40 234 0 . 0 0 0 0 0 GREB1L 80000 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 18975392 18975392 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001142966 exon5 c.G402A p.M134I GTGTATGGAACAA . 96 32 92 2 . 0 0 0 0 0 TTC39C 125488 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 21646036 21646036 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTC39C-91 NM_001135993 exon3 c.A277G p.T93A AAAACCACAGAAA . 151 73 183 0 . 0 0 0 0 0 SS18 6760 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 23615884 23615884 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SS18-1968 NM_001007559 exon8 c.A884G p.H295R TCATTATGACCTA . 51 20 69 0 . 0 0 0 0 0 CDH2 1000 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 25565561 25565561 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CDH2-525 NM_001792 exon12 c.C1906A p.P636T CAAATGGTCCAGC . 87 17 96 0 . 0 0 0 0 0 CDH2 1000 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 25593747 25593747 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CDH2-525 NM_001792 exon3 c.C299A p.A100D AACTTGGCATGCT . 75 19 77 0 . 0 0 0 0 0 DSG1 1828 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 28906904 28906904 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DSG1-519 NM_001942 exon3 c.G152T p.W51L GTGAATGGATCAA . 355 155 461 1 . 0 0 0 0 0 DSG3 1830 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 29049291 29049291 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DSG3-98 NM_001944 exon12 c.C1876T p.L626F CTGCTCCTTGGTC . 88 35 70 0 . 0 0 0 0 0 KLHL14 57565 broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 30350407 30350407 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KLHL14-91 NM_020805 exon2 c.G148A p.V50M CCAGCACGGCCTT . 100 31 78 1 . 0 0 0 0 0 ASXL3 80816 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 31323338 31323338 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ASXL3-49 NM_030632 exon12 c.C3526A p.R1176R CACCTCCGGGAGA . 42 24 58 0 . 0 0 0 0 0 ASXL3 80816 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 31325189 31325189 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ASXL3-49 NM_030632 exon12 c.G5377C p.E1793Q GCACCAGAGAGAA . 65 11 93 0 . 0 0 0 0 0 DTNA 1837 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 32431876 32431876 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DTNA-153 NM_001390 exon14 c.C1435A p.L479I GCTGAGCTAGAAA . 204 93 195 0 . 0 0 0 0 0 ZNF271 10778 broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 32889587 32889587 + RNA SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF271-90 . . . . CTAGGAGGGTGGT . 124 55 117 1 . 0 0 0 0 0 FHOD3 80206 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 34297943 34297943 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FHOD3-139 NM_025135 exon16 c.G2157T p.R719S TGGGAGGACCCAG . 161 28 160 1 . 0 0 0 0 0 KIAA1328 57536 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 34646889 34646889 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIAA1328-90 NM_020776 exon7 c.G613C p.V205L TCATCTGTGGAAC . 202 43 181 0 . 0 0 0 0 0 CELF4 56853 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 34853088 34853088 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CELF4-92 NM_020180 exon7 c.G840C p.A280A GCCCTGCGCGACT . 314 147 249 0 . 0 0 0 0 0 PIK3C3 5289 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 39567811 39567811 + Silent SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PIK3C3-1312 NM_002647 exon5 c.A567G p.K189K GGTGAAAGTAGAT . 133 73 162 0 . 0 0 0 0 0 SLC14A2 8170 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 43207111 43207111 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC14A2-93 NM_001242692 exon5 c.A520T p.R174W CAAGACAGGTGGG . 120 22 86 0 . 0 0 0 0 0 SLC14A2 8170 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 43219733 43219733 + Missense_Mutation SNP G G T rs137884313 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC14A2-93 NM_001242692 exon8 c.G866T p.G289V CTGTTGGGGTCGG . 95 21 94 0 G|1.000;A|0.000 0 0 0 0 0 SIGLEC15 284266 hgsc.bcm.edu 37 18 43417752 43417752 + Silent SNP C C G rs78530686 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SIGLEC15-90 NM_213602 exon3 c.C387G p.V129V GCGCGTCGAGCGC . 5 5 0 0 C|0.786;G|0.214 0 0 0 0 0 EPG5 57724 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 43458387 43458387 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EPG5-580 NM_020964 exon34 c.A5896G p.I1966V GCTGAATGATTAC . 62 14 54 0 . 0 0 0 0 0 LOXHD1 125336 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 44104755 44104755 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_144612 exon30 c.C4656A p.N1552K GTCCTCGTTGGTG . 207 74 248 0 . 0 0 0 0 0 TCEB3B 51224 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 44561326 44561326 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TCEB3B-156 NM_016427 exon1 c.C310T p.Q104X GGTCCTGAAGAGC . 66 36 52 0 . 0 0 0 0 0 ME2 4200 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 48458690 48458690 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ME2-90 NM_001168335 exon13 c.C1377G p.V459V GCGAGTCTTTACA . 151 23 185 0 . 0 0 0 0 0 MEX3C 51320 hgsc.bcm.edu 37 18 48723146 48723154 + In_Frame_Del DEL GCCGCCGCG GCCGCCGCG - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 GCCGCCGCG GCCGCCGCG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MEX3C-659 NM_016626 exon1 c.537_545del p.179_182del GCCGCCGCCGCCG . 28 21 1 1 . 0 0 0 0 0 DCC 1630 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 50278479 50278479 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DCC-225 NM_005215 exon2 c.C147G p.A49A TGATGCCGTCACA . 57 8 66 0 . 0 0 0 0 0 DCC 1630 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 50985607 50985607 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DCC-225 NM_005215 exon24 c.G3398C p.R1133P GGAAACGGGCCAC . 62 22 80 0 . 0 0 0 0 0 RAX 30062 hgsc.bcm.edu 37 18 56936395 56936395 + Silent SNP T T C rs7226481 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RAX-90 NM_013435 exon3 c.A882G p.Q294Q GAGAGGTTGCAGG . 24 12 0 0 T|0.767;C|0.233 0 0 0 0 0 CDH20 28316 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 59221763 59221763 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CDH20-155 NM_031891 exon11 c.G2241T p.T747T CCAGACGTATATG . 115 54 83 0 . 0 0 0 0 0 TNFRSF11A 8792 broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 60036089 60036089 + Silent SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TNFRSF11A-659 NM_003839 exon9 c.A939G p.V313V ATGTGTAGGAGGT . 237 63 224 1 . 0 0 0 0 0 SERPINB7 8710 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 61460444 61460444 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SERPINB7-226 NM_001261830 exon4 c.C269A p.S90Y ATGCATCCCACAA . 89 21 105 0 . 0 0 0 0 0 SERPINB8 5271 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 61654266 61654266 + Missense_Mutation SNP C C A rs146637081 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SERPINB8-226 NM_198833 exon7 c.C879A p.D293E TTTTGACGAAGCC . 153 66 140 0 C|1.000;G|0.000 0 0 0 0 0 CDH7 1005 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 63476945 63476945 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CDH7-94 NM_004361 exon3 c.C216G p.H72Q GCTTCACTCTGAT . 94 40 108 0 . 0 0 0 0 0 CDH7 1005 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 63511216 63511216 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CDH7-94 NM_004361 exon7 c.A1150T p.M384L TACCCTATGGAGG . 119 32 124 0 . 0 0 0 0 0 CDH19 28513 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 64239377 64239377 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CDH19-516 NM_021153 exon2 c.C65A p.A22E TCTGTTGCTCCAA . 107 16 114 0 . 0 0 0 0 0 DSEL 92126 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 65179129 65179129 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DSEL-157 NM_032160 exon2 c.G2747T p.W916L ACCTTCCATTCAC . 70 30 81 1 . 0 0 0 0 0 CCDC102B 79839 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 66564598 66564598 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CCDC102B-93 NM_001093729 exon8 c.G1196T p.R399I AAAATAGATTAAG . 49 8 56 0 . 0 0 0 0 0 CCDC102B 79839 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 18 66721282 66721282 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CCDC102B-93 NM_001093729 exon10 c.A1450T p.N484Y TCCCTGAATCAGA . 22 5 16 0 . 0 0 0 0 0 CBLN2 147381 hgsc.bcm.edu 37 18 70209321 70209321 + Silent SNP C C A rs7237888 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CBLN2-90 NM_182511 exon3 c.G75T p.P25P GCCGCCCGGCTCG . 9 9 0 0 C|0.390;A|0.610 0 0 0 0 0 NETO1 81832 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 70526196 70526196 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NETO1-94 NM_001201465 exon4 c.C334A p.P112T TTATTGGAGAAAA . 124 49 143 0 . 0 0 0 0 0 ZNF407 55628 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 72775251 72775251 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF407-92 NM_017757 exon8 c.G5574T p.P1858P AGCGCCGCCCCCT . 253 62 203 0 . 0 0 0 0 0 CTDP1 9150 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 77475469 77475469 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CTDP1-90 NM_004715 exon8 c.G2009T p.R670L TCACTCGGCTGGT . 112 46 70 0 . 0 0 0 0 0 STK11 6794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 1220443 1220443 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . STK11-5227 NM_000455 exon4 c.C536G p.P179R TCAAGCCGGGGAA . 183 107 169 1 . 0 0 0 0 0 OAZ1 4946 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 2271846 2271846 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OAZ1-68 . . . . CGTCCAGTCCAGG . 206 132 216 2 . 0 0 0 0 0 SGTA 6449 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 2757762 2757762 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SGTA-91 NM_003021 exon10 c.G756T p.S252S GCCACCCGAAATC . 91 58 62 1 . 0 0 0 0 0 NFIC 4782 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 3449047 3449047 + Nonsense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NFIC-226 NM_001245004 exon7 c.A994T p.K332X ATGGACAAGTCAC . 145 88 116 0 . 0 0 0 0 0 PTPRS 5802 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 5239001 5239001 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PTPRS-357 NM_002850 exon13 c.G1778T p.R593L GCCAGGCGGAAGG . 118 66 43 0 . 0 0 0 0 0 MLLT1 4298 hgsc.bcm.edu 37 19 6214015 6214015 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MLLT1-658 NM_005934 exon9 c.G1342T p.A448S AGTCGGCGCTGTT . 9 7 10 0 . 0 0 0 0 0 KHSRP 8570 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 6416662 6416662 + Splice_Site SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KHSRP-226 NM_003685 exon15 c.1328-1G>T . CGCCACCTGCAGA . 78 43 87 0 . 0 0 0 0 0 VAV1 7409 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 6853959 6853959 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . VAV1-1276 NM_005428 exon26 c.2334delG p.V778fs CACAGTGGGAAGC . 23 17 26 0 . 0 0 0 0 0 ZNF358 140467 hgsc.bcm.edu 37 19 7585011 7585011 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF358-90 NM_018083 exon2 c.C883T p.Q295X TGTCCGCAGTGCG . 23 17 0 0 . 0 0 0 0 0 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 9060203 9060203 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MUC16-566 NM_024690 exon3 c.C27243A p.T9081T TGTTTGGGTGGTA . 115 71 196 0 . 0 0 0 0 0 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 9062539 9062539 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MUC16-566 NM_024690 exon3 c.G24907T p.G8303C CCAGGCCAGGGTT . 94 54 145 0 . 0 0 0 0 0 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 9070334 9070334 + Silent SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MUC16-566 NM_024690 exon3 c.T17112A p.T5704T GTGCGCAGTGTCT . 188 104 271 0 . 0 0 0 0 0 MUC16 94025 bcgsc.ca 37 19 9090531 9090531 + Silent SNP T T C rs12976721 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MUC16-566 NM_024690 exon1 c.A1284G p.E428E TTCTGTTTCCTTT . 103 5 148 1 T|0.772;C|0.228 0 0 0 0 0 COL5A3 50509 broad.mit.edu;mdanderson.org 37 19 10097029 10097029 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COL5A3-99 NM_015719 exon30 c.G2314T p.A772S CGCCAGCCTGCCC . 29 20 19 0 . 0 0 0 0 0 COL5A3 50509 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 10106750 10106750 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COL5A3-99 NM_015719 exon15 c.G1525T p.G509W GTGGCCCTTCTGC . 149 85 161 0 . 0 0 0 0 0 TYK2 7297 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 10476223 10476223 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TYK2-1009 NM_003331 exon7 c.G981A p.W327X TACTGGCCACCAC . 78 32 62 1 . 0 0 0 0 0 SMARCA4 6597 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 11150201 11150201 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SMARCA4-1523 NM_001128849 exon30 c.G4238A p.G1413D AGCGTGGCCTTCA . 65 39 74 0 . 0 0 0 0 0 CACNA1A 773 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 13565966 13565966 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CACNA1A-67 NM_001127222 exon2 c.G354T p.E118D ATGCTGCTCCAGT . 96 55 127 0 . 0 0 0 0 0 SLC1A6 6511 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 15083539 15083539 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC1A6-186 NM_001272087 exon4 c.A184T p.T62S TGACCGTCAGCAG . 321 145 227 1 . 0 0 0 0 0 PGLYRP2 114770 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 15586650 15586650 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PGLYRP2-93 NM_052890 exon2 c.G831C p.L277L CCCATCCAGGGCG . 55 12 59 0 . 0 0 0 0 0 CYP4F3 4051 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 15752302 15752302 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CYP4F3-93 NM_001199209 exon2 c.G77A p.G26E TGGTTGGGGCCTC . 121 69 133 0 . 0 0 0 0 0 SIN3B 23309 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 16973222 16973222 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SIN3B-228 NM_015260 exon9 c.T1118A p.F373Y TGTCCTTCGCGCC . 58 29 84 0 . 0 0 0 0 0 MYO9B 4650 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 17303667 17303667 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYO9B-67 NM_001130065 exon21 c.A2924T p.H975L GTCGGCACTTCCT . 154 93 107 0 . 0 0 0 0 0 FAM129C 199786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 17643172 17643172 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM129C-90 NM_001098524 exon4 c.G380T p.R127L ACGGCCGCCTAGA . 172 105 199 0 . 0 0 0 0 0 ZNF90 7643 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 20228898 20228898 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF90-48 NM_007138 exon4 c.G535T p.G179C GAATGTGGCAAAG . 54 21 62 0 . 0 0 0 0 0 ZNF675 171392 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 23844980 23844980 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF675-228 NM_138330 exon3 c.C162T p.T54T CAGACAGGTGATC . 36 17 45 0 . 0 0 0 0 0 TSHZ3 57616 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 31767667 31767667 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TSHZ3-232 NM_020856 exon2 c.C3032G p.T1011S TGTTCGGTGGACA . 198 112 316 0 . 0 0 0 0 0 TSHZ3 57616 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 31768123 31768123 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TSHZ3-232 NM_020856 exon2 c.C2576A p.T859K TTTGACGTGTGGC . 106 61 157 0 . 0 0 0 0 0 ZNF599 148103 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 35260460 35260460 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF599-92 NM_001007248 exon2 c.G19T p.A7S CTAATGCCTGGGA . 58 36 92 0 . 0 0 0 0 0 MAG 4099 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 35786525 35786525 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MAG-947 NM_080600 exon4 c.G56T p.G19V CCCGAGGGGGTCA . 57 30 69 0 . 0 0 0 0 0 ZFP82 284406 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 36884174 36884174 + Silent SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZFP82-91 NM_133466 exon5 c.T1068C p.H356H TCTCTGATGGAGT . 48 30 77 0 . 0 0 0 0 0 ZNF382 84911 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 37100830 37100830 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF382-90 NM_032825 exon3 c.G14T p.G5V TACAGGGATCAGT . 157 85 172 0 . 0 0 0 0 0 SIPA1L3 23094 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 38572624 38572624 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SIPA1L3-91 NM_015073 exon3 c.G419A p.R140Q TCCACCGACTCTC . 84 23 120 0 . 0 0 0 0 0 SIPA1L3 23094 hgsc.bcm.edu 37 19 38572784 38572784 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SIPA1L3-91 NM_015073 exon3 c.G579T p.T193T GCACACGGGGGCG . 37 24 3 0 . 0 0 0 0 0 RYR1 6261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 38954426 38954426 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RYR1-100 NM_001042723 exon22 c.G2722T p.D908Y CTTGTGGACTTCC . 88 52 107 0 . 0 0 0 0 0 MAP4K1 11184 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 39103252 39103252 + Silent SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MAP4K1-980 NM_007181 exon9 c.A664C p.R222R CCTACCTGAGAGG . 38 24 52 0 . 0 0 0 0 0 RINL 126432 hgsc.bcm.edu 37 19 39360720 39360720 + Missense_Mutation SNP G G A rs8110393 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RINL-91 NM_001195833 exon9 c.C1205T p.P402L GGGGCGGGGCTCT . 15 14 0 0 G|0.349;A|0.651 0 0 0 0 0 PAPL 0 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 39589631 39589631 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001004318 exon4 c.C354A p.S118R CTGGAGCCGTCGG . 28 16 50 0 . 0 0 0 0 0 SUPT5H 6829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 39959793 39959793 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SUPT5H-94 NM_003169 exon14 c.G1218T p.E406D CCTGGAGGTGGTG . 146 89 223 1 . 0 0 0 0 0 SERTAD1 29950 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 40929113 40929113 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SERTAD1-226 NM_013376 exon2 c.C341T p.S114F GCCATGGAGGCTG . 138 16 95 0 . 0 0 0 0 0 NUMBL 9253 ucsc.edu 37 19 41173871 41173871 + Silent SNP C C T rs62637692 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NUMBL-637 NM_004756 exon10 c.G1332A p.Q444Q TTGCTGCTGTTGC . 57 20 47 7 C|0.982;T|0.018 0 0 0 0 0 NUMBL 9253 ucsc.edu 37 19 41173874 41173874 + Silent SNP T T C rs62637691 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NUMBL-637 NM_004756 exon10 c.A1329G p.Q443Q CTGCTGTTGCTGC . 56 22 48 7 T|0.981;C|0.019 0 0 0 0 0 NUMBL 9253 hgsc.bcm.edu 37 19 41173883 41173883 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NUMBL-637 NM_004756 exon10 c.G1320A p.Q440Q CTGCTGCTGCTGC . 58 4 51 0 . 0 0 0 0 0 NUMBL 9253 hgsc.bcm.edu 37 19 41173904 41173904 + Silent SNP T T C rs79658769 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NUMBL-637 NM_004756 exon10 c.A1299G p.Q433Q TTGCTGTTGCTGC . 49 11 49 0 C|1.000;|0.000 0 0 0 0 0 PSG9 5678 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 43766262 43766262 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PSG9-92 NM_002784 exon3 c.C459A p.S153R GTTGCTGCTGGAG . 73 30 118 0 . 0 0 0 0 0 PHLDB3 653583 hgsc.bcm.edu 37 19 44005886 44005886 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PHLDB3-68 NM_198850 exon4 c.G534A p.Q178Q ACAGACCTGTTCC . 9 7 0 0 . 0 0 0 0 0 MARK4 57787 broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 45801154 45801154 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MARK4-782 NM_001199867 exon15 c.G1819T p.G607W CCCGCCGGGCGGC . 76 49 27 2 . 0 0 0 0 0 GPR4 2828 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 46094390 46094390 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR4-92 NM_005282 exon2 c.G735A p.L245L GCGGGACAGCAAG . 74 41 65 1 . 0 0 0 0 0 DACT3 147906 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 47156013 47156013 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_145056 exon3 c.T403A p.C135S CCCCACAGAAGGT . 39 23 69 0 . 0 0 0 0 0 MEIS3 56917 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 47920493 47920493 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MEIS3-90 NM_001009813 exon2 c.C127G p.P43A GCAGGGGCTGGGG . 112 64 87 0 . 0 0 0 0 0 SLC8A2 6543 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 19 47951225 47951225 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC8A2-94 NM_015063 exon4 c.G1604A p.S535N CACTCGCTCACGT . 63 35 18 0 . 0 0 0 0 0 GLTSCR1 29998 hgsc.bcm.edu 37 19 48183685 48183685 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GLTSCR1-48 NM_015711 exon6 c.C1258T p.Q420X GCGCTGCAAGCGA . 20 8 1 0 . 0 0 0 0 0 GLTSCR2 29997 hgsc.bcm.edu 37 19 48258717 48258717 + Missense_Mutation SNP A A G rs1804994 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GLTSCR2-514 NM_015710 exon9 c.A1166G p.Q389R GGCGGCAGAGGCG . 7 7 0 0 A|0.308;G|0.692 0 0 0 0 0 RPL13A 23521 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 49994074 49994074 + Missense_Mutation SNP C C G rs1061320 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RPL13A-90 NM_012423 exon5 c.C295G p.L99V GCCGCTCTGGACC . 201 125 238 0 C|1.000;|0.000 0 0 0 0 0 SCAF1 58506 hgsc.bcm.edu 37 19 50155523 50155523 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SCAF1-68 NM_021228 exon7 c.G1877T p.R626M CCTCGAGGCGCGA . 20 13 2 0 . 0 0 0 0 0 CPT1C 126129 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 50209636 50209636 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CPT1C-92 NM_001199752 exon12 c.G1309A p.A437T GCCTACGCCCATG . 83 45 54 1 . 0 0 0 0 0 IL4I1 259307 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 50404912 50404912 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IL4I1-523 NM_172374 exon4 c.C63A p.P21P CCTCTGGGGGGCT . 81 54 60 0 . 0 0 0 0 0 MYBPC2 4606 hgsc.bcm.edu 37 19 50962397 50962397 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYBPC2-67 NM_004533 exon23 c.C2625A p.T875T GTGGACCAAGGGC . 41 22 3 0 . 0 0 0 0 0 KLK7 5650 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 51480918 51480918 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KLK7-650 NM_139277 exon6 c.A636T p.R212S GGTACCTCTGCAC . 99 57 113 0 . 0 0 0 0 0 SIGLEC8 27181 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 51958781 51958781 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SIGLEC8-94 NM_014442 exon4 c.G942T p.E314D AGGCAGCTCCAGC . 152 93 175 1 . 0 0 0 0 0 SIGLEC8 27181 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 51961365 51961365 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SIGLEC8-94 NM_014442 exon1 c.C277G p.Q93E GGCCCTGGGTCTC . 177 108 280 1 . 0 0 0 0 0 FPR2 2358 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 52272299 52272299 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FPR2-501 NM_001005738 exon2 c.C388G p.P130A CTGCATCCAGTCT . 106 66 132 0 . 0 0 0 0 0 MIR517A 574479 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 54215536 54215536 + RNA SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . . . . . AGTGACCCTCTAG . 86 53 85 0 . 0 0 0 0 0 LILRB3 11025 bcgsc.ca 37 19 54722275 54722275 + Silent SNP G G A rs56528424 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LILRB3-93 NM_006864 exon11 c.C1548T p.A516A CTTCACGGCAGCA . 261 7 318 2 . 0 0 0 0 0 LILRA6 79168 bcgsc.ca 37 19 54744361 54744361 + Silent SNP A A C rs2361801 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LILRA6-24 NM_024318 exon6 c.T1047G p.G349G AAAATAACCCCGT . 396 31 513 28 C|0.414;A|0.586 0 0 0 0 0 LILRA6 79168 bcgsc.ca 37 19 54744387 54744387 + Missense_Mutation SNP C C T rs71263238 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LILRA6-24 NM_024318 exon6 c.G1021A p.V341M GGGTCACGTTCTC . 351 9 436 4 C|0.659;T|0.341 0 0 0 0 0 LILRA6 79168 broad.mit.edu 37 19 54744441 54744441 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LILRA6-24 NM_024318 exon6 c.G967C p.D323H CGGTGTCATAGAT . 232 5 274 0 . 0 0 0 0 0 TTYH1 57348 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 54930366 54930366 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTYH1-90 NM_020659 exon2 c.T191C p.V64A TCGCTGTCTACCT . 57 39 59 0 . 0 0 0 0 0 NLRP7 199713 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 55451819 55451819 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NLRP7-291 NM_001127255 exon4 c.G368T p.W123L TTTCTCCATCCTT . 40 26 41 0 . 0 0 0 0 0 NLRP2 55655 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 55481494 55481494 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NLRP2-120 NM_001174082 exon2 c.C111A p.H37Q GGCACACGAGCTC . 160 90 179 2 . 0 0 0 0 0 NLRP4 147945 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 56369475 56369475 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NLRP4-216 NM_134444 exon3 c.G716C p.G239A AGGGCGGCTTGAA . 109 64 146 0 . 0 0 0 0 0 NLRP8 126205 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 56466259 56466259 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NLRP8-361 NM_176811 exon3 c.G835T p.D279Y AAACCCGACCAAC . 96 58 139 1 . 0 0 0 0 0 NLRP8 126205 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 56466706 56466706 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NLRP8-361 NM_176811 exon3 c.G1282T p.V428F GTGTTCGTCCGGT . 88 47 126 0 . 0 0 0 0 0 NLRP5 126206 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 56539330 56539330 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NLRP5-162 NM_153447 exon7 c.G1731C p.E577D CTGTGAGGAGTAC . 143 81 157 1 . 0 0 0 0 0 NLRP5 126206 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 56539331 56539331 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NLRP5-162 NM_153447 exon7 c.G1732T p.E578X TGTGAGGAGTACT . 141 79 160 1 . 0 0 0 0 0 NLRP5 126206 broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 56569695 56569695 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NLRP5-162 NM_153447 exon14 c.T3389A p.V1130E ACCTGGTGCAGAA . 94 54 94 1 . 0 0 0 0 0 PEG3 5178 ucsc.edu;bcgsc.ca 37 19 57325099 57325099 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PEG3-164 NM_001146184 exon9 c.C4711G p.Q1571E AGAGCTGCCCACA . 165 90 249 2 . 0 0 0 0 0 PEG3 5178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 57334984 57334984 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PEG3-164 NM_001146184 exon4 c.C458A p.P153Q TGAGGTGGTGAGG . 166 92 217 0 . 0 0 0 0 0 DUXA 503835 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 57672059 57672059 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DUXA-91 NM_001012729 exon2 c.C132A p.T44T TTGTTTGGTAGCA . 54 29 45 1 . 0 0 0 0 0 AURKC 6795 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 57746327 57746327 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AURKC-1560 NM_001015878 exon6 c.660delG p.V220fs AAAGGTGGATTTG . 137 61 188 0 . 0 0 0 0 0 ZNF17 7565 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 57932542 57932542 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF17-90 NM_006959 exon3 c.G1682T p.R561I GTGGGAGAGTTTT . 68 44 91 1 . 0 0 0 0 0 ZNF530 348327 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 58117486 58117486 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF530-90 NM_020880 exon3 c.G593C p.R198T ACAGCAGGATTAG . 95 63 119 1 . 0 0 0 0 0 ZNF211 10520 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 58152335 58152335 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF211-92 NM_001265597 exon5 c.G676A p.A226T ACAGAGGCACCTT . 119 71 167 1 . 0 0 0 0 0 ZNF551 90233 broad.mit.edu;bcgsc.ca 37 19 58199642 58199642 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF551-91 NM_138347 exon3 c.G1999A p.E667K CACACTGAAGAAA . 46 21 79 2 . 0 0 0 0 0 A1BG 1 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 58864353 58864353 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . A1BG-90 NM_130786 exon3 c.G281A p.R94H CCCGAGCGGCAGC . 90 25 121 0 . 0 0 0 0 0 SNTG2 54221 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 1094065 1094065 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SNTG2-136 NM_018968 exon4 c.C294G p.V98V CCCTGTCGTCATA . 120 44 149 0 . 0 0 0 0 0 TPO 7173 hgsc.bcm.edu 37 2 1481231 1481231 + Missense_Mutation SNP G G C rs2175977 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TPO-332 NM_175719 exon8 c.G1193C p.S398T GCGCCAGCGAGGT . 11 9 0 0 G|0.301;C|0.699 0 0 0 0 0 MYT1L 23040 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 1926733 1926733 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYT1L-95 NM_015025 exon10 c.C808A p.Q270K GTCCTTGGGCTAA . 237 92 280 1 . 0 0 0 0 0 MYT1L 23040 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 1926734 1926734 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYT1L-95 NM_015025 exon10 c.C807A p.A269A TCCTTGGGCTAAT . 239 91 280 2 . 0 0 0 0 0 TSSC1 7260 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 3197900 3197900 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TSSC1-90 NM_003310 exon7 c.G691A p.V231M CCCGCACCAGCTG . 82 27 77 0 . 0 0 0 0 0 TRAPPC12 51112 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 3447573 3447573 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_016030 exon6 c.C1441G p.R481G TCGATGCGCATCT . 163 66 194 0 . 0 0 0 0 0 SOX11 6664 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 5834070 5834070 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SOX11-514 NM_003108 exon1 c.G1217T p.S406I AGGGCAGCCTGGG . 200 45 156 0 . 0 0 0 0 0 CMPK2 129607 hgsc.bcm.edu 37 2 7005369 7005369 + Silent SNP A A G rs11678810 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CMPK2-68 NM_001256478 exon1 c.T459C p.C153C CTCCTGACAGGCG . 5 5 0 0 A|0.003;G|0.997 0 0 0 0 0 FAM84A 151354 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 14774305 14774305 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM84A-91 NM_145175 exon2 c.C202A p.P68T GAGAGCCCCAGCC . 73 29 86 0 . 0 0 0 0 0 NBAS 51594 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 15372587 15372587 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NBAS-94 NM_015909 exon47 c.G6195T p.L2065L ACCTTCCAGGACC . 96 33 85 0 . 0 0 0 0 0 FAM49A 81553 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 16743378 16743378 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM49A-226 NM_030797 exon6 c.330delG p.L110fs ACAAGTCAGAGAT . 122 41 113 0 . 0 0 0 0 0 NT5C1B-RDH14 100526794 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 18736655 18736655 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001199103 exon9 c.G1755A p.V585V CCATGACACCAAA . 143 28 184 1 . 0 0 0 0 0 APOB 338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 21228418 21228418 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . APOB-175 NM_000384 exon26 c.G11322T p.L3774L AGTTCTCAGCTTC . 80 19 81 0 . 0 0 0 0 0 ATAD2B 54454 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 24110821 24110821 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ATAD2B-68 NM_001242338 exon4 c.G453C p.K151N ATCTCCCTTCTTT . 130 24 152 0 . 0 0 0 0 0 EFR3B 22979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 25326646 25326646 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_014971 exon4 c.G353C p.G118A TCCTCGGCACCAA . 136 31 124 0 . 0 0 0 0 0 OTOF 9381 bcgsc.ca 37 2 26696889 26696889 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OTOF-135 NM_194248 exon27 c.C3378A p.I1126I GGGCCGGATGCCC . 366 162 329 4 . 0 0 0 0 0 SLC30A3 7781 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 27479291 27479291 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC30A3-90 NM_003459 exon7 c.G981A p.T327T AGTGAGCGTAAGG . 358 68 308 0 . 0 0 0 0 0 ALK 238 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 29497978 29497978 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ALK-3833 NM_004304 exon11 c.C2028A p.I676I GTCAAAGATGGGG . 113 39 155 0 . 0 0 0 0 0 ALK 238 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 29754793 29754793 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ALK-3833 NM_004304 exon4 c.1142delC p.P381fs TTCCCTGGAGTGG . 88 37 83 0 . 0 0 0 0 0 ALK 238 hgsc.bcm.edu 37 2 30143451 30143451 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ALK-3833 NM_004304 exon1 c.C75A p.T25T CTGGCCGGTCCCC . 14 9 2 0 . 0 0 0 0 0 XDH 7498 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 31610680 31610680 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . XDH-158 NM_000379 exon8 c.G648T p.L216F TACCAGCAACTCT . 58 13 63 0 . 0 0 0 0 0 NLRC4 58484 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 32477523 32477523 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NLRC4-276 NM_001199138 exon3 c.G227A p.W76X TAGTTCCACTCCT . 89 40 88 0 . 0 0 0 0 0 BIRC6 57448 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 32673862 32673862 + Splice_Site SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BIRC6-233 NM_016252 exon22 c.4485-1G>T . TTTTCAGATATGG . 34 13 51 0 . 0 0 0 0 0 TTC27 55622 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 32865410 32865410 + Missense_Mutation SNP A A C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTC27-90 NM_017735 exon4 c.A470C p.K157T CCTCGAAGCCTAT . 71 20 76 0 . 0 0 0 0 0 RASGRP3 25780 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 33752422 33752422 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RASGRP3-661 NM_170672 exon11 c.C1026T p.S342S AGTCTCCCTGCAG . 137 62 136 0 . 0 0 0 0 0 FAM98A 25940 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 33810384 33810384 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM98A-91 NM_015475 exon8 c.G1016T p.G339V CCTCTCCCTCCTC . 124 47 145 1 . 0 0 0 0 0 QPCT 25797 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 37599541 37599541 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . QPCT-90 NM_012413 exon6 c.T866C p.L289S ACTCTTTGGAGGG . 189 76 198 0 . 0 0 0 0 0 SLC8A1 6546 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 40656207 40656207 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC8A1-93 NM_001252624 exon1 c.C1214G p.P405R CTAACAGGGTCAT . 175 41 189 0 . 0 0 0 0 0 COX7A2L 9167 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 42578413 42578413 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COX7A2L-226 NM_004718 exon3 c.G291T p.G97G GATGGTCCCTCCC . 309 62 299 0 . 0 0 0 0 0 STON1-GTF2A1L 286749 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 48872174 48872174 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . STON1-GTF2A1L-27 NM_001198593 exon7 c.C2418A p.G806G CTAGGGCACTTCA . 33 8 53 0 . 0 0 0 0 0 NRXN1 9378 broad.mit.edu;mdanderson.org 37 2 50574004 50574004 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NRXN1-92 NM_138735 exon1 c.G84A p.G28G GCGCCCCCCTGCG . 34 10 31 0 . 0 0 0 0 0 GPR75-ASB3 100302652 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 53992682 53992682 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001164165 exon2 c.A142T p.T48S AGCACGTGTCCGC . 100 41 120 0 . 0 0 0 0 0 GPR75 10936 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 54080954 54080954 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR75-92 NM_006794 exon2 c.G940T p.A314S CCTTGGCAGTGGA . 177 63 182 0 . 0 0 0 0 0 APLF 200558 broad.mit.edu;bcgsc.ca 37 2 68805010 68805010 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . APLF-92 NM_173545 exon10 c.G1392T p.L464L TGACCTGAACGAC . 117 48 114 1 . 0 0 0 0 0 BMP10 27302 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 69092925 69092925 + Silent SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BMP10-92 NM_014482 exon2 c.T1113C p.I371I CTGGATAATTGCA . 172 84 206 2 . 0 0 0 0 0 ASPRV1 151516 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 70188807 70188807 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ASPRV1-69 NM_152792 exon1 c.G14T p.G5V CTGGCCCCTGGGC . 66 13 59 0 . 0 0 0 0 0 ZNF638 27332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 71629179 71629179 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF638-94 NM_014497 exon16 c.G2791T p.G931C TTTGGTGGTTTAA . 112 20 117 0 . 0 0 0 0 0 DYSF 8291 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 71709010 71709010 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DYSF-158 NM_001130984 exon3 c.G149C p.G50A TCCAGGGATTTGA . 46 13 38 0 . 0 0 0 0 0 SPR 6697 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 73115545 73115545 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPR-92 NM_003124 exon2 c.C407T p.S136F TGACTTCCAGCGT . 230 54 244 1 . 0 0 0 0 0 EMX1 2016 broad.mit.edu 37 2 73151565 73151565 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EMX1-90 NM_004097 exon2 c.C648T p.Y216Y CCACTACGTGGTG . 105 4 23 0 . 0 0 0 0 0 EGR4 1961 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 73519448 73519448 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EGR4-90 NM_001965 exon2 c.G907C p.A303P TGAAGGCAGAGAC . 96 12 52 0 . 0 0 0 0 0 ALMS1 7840 broad.mit.edu;bcgsc.ca 37 2 73679621 73679621 + Silent SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ALMS1-142 NM_015120 exon8 c.A5964T p.S1988S CTACTCACATTCA . 103 45 111 2 . 0 0 0 0 0 ALMS1 7840 hgsc.bcm.edu;broad.mit.edu 37 2 73717464 73717464 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ALMS1-142 NM_015120 exon10 c.8375delG p.R2792fs GTAGAAGGCAAAG . 29 10 21 0 . 0 0 0 0 0 TLX2 3196 hgsc.bcm.edu;bcgsc.ca 37 2 74742065 74742065 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TLX2-90 NM_016170 exon1 c.132delT p.H44fs GGGTCATGGGGAG . 169 44 125 1 . 0 0 0 0 0 DQX1 165545 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 74746335 74746335 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DQX1-92 NM_133637 exon11 c.C1829T p.T610I TTTCCAGTCCCGT . 148 73 145 1 . 0 0 0 0 0 AUP1 550 bcgsc.ca 37 2 74756548 74756548 + Silent SNP G G C rs1183739 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AUP1-90 NM_181575 exon2 c.C129G p.L43L GAGAAAGAGGCGC . 370 9 316 2 G|0.284;C|0.716 0 0 0 0 0 TACR1 6869 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 75425974 75425974 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TACR1-523 NM_001058 exon1 c.C87G p.A29A TTGCCAGGCTGGT . 302 89 322 0 . 0 0 0 0 0 LRRTM4 80059 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 77745615 77745615 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRRTM4-94 NM_024993 exon3 c.C1380A p.H460Q AAGAGAGTGTTGC . 111 29 111 2 . 0 0 0 0 0 LRRTM4 80059 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 2 77746839 77746839 + Missense_Mutation SNP G G C rs76327576 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRRTM4-94 NM_024993 exon3 c.C156G p.F52L ATCTGCGAAAGCA . 137 24 191 0 G|0.996;C|0.004 0 0 0 0 0 REG3A 5068 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 79385466 79385466 + Missense_Mutation SNP G G C rs11554092 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . REG3A-91 NM_138938 exon3 c.C319G p.H107D GGTCATGGAGCCC . 131 28 163 0 . 0 0 0 0 0 CTNNA2 1496 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 79878752 79878752 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CTNNA2-368 NM_001164883 exon2 c.G70T p.V24L CTAACAGTGGAAA . 91 34 111 0 . 0 0 0 0 0 LRRTM1 347730 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 80530470 80530470 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRRTM1-73 NM_178839 exon2 c.G475T p.G159W GCAGCCCGTGGAA . 110 51 99 1 . 0 0 0 0 0 RETSAT 54884 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 85577993 85577993 + Missense_Mutation SNP C C T rs201722519 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RETSAT-70 NM_017750 exon3 c.G507A p.M169I ACTGTACATGGGG . 167 69 222 1 C|0.999;T|0.001 0 0 0 0 0 CAPG 822 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 85625897 85625897 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CAPG-204 NM_001256139 exon7 c.C675A p.G225G CTTGGGGCCCAGG . 162 30 125 2 . 0 0 0 0 0 RNF103-CHMP3 100526767 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 86769415 86769415 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001198954 exon4 c.G153T p.K51N TCTTATCTTCAAT . 106 31 108 0 . 0 0 0 0 0 CD8A 925 hgsc.bcm.edu 37 2 87016799 87016799 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CD8A-91 NM_001145873 exon6 c.C478A p.R160S CTGGGCGCAGGGA . 7 4 0 0 . 0 0 0 0 0 TEX37 200523 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 88828736 88828736 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_152670 exon4 c.287delG p.R96fs CCACGAGGGAGGA . 293 83 241 0 . 0 0 0 0 0 ADRA2B 151 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 96780750 96780750 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADRA2B-229 NM_000682 exon1 c.G1139T p.C380F AACCAGCAGAGCA . 180 78 168 1 . 0 0 0 0 0 STARD7 56910 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 96858161 96858161 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . STARD7-68 NM_020151 exon6 c.G789T p.R263S TCTGACCCTGACG . 111 48 96 0 . 0 0 0 0 0 INPP4A 3631 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 99181141 99181141 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . INPP4A-227 NM_001134224 exon20 c.G2082T p.R694S GCTGAGGAACTGC . 143 30 158 0 . 0 0 0 0 0 TBC1D8 11138 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 2 101670676 101670676 + Silent SNP G G A rs78556703 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TBC1D8-25 NM_001102426 exon4 c.C480T p.V160V GTAGGTGACCAGC . 123 20 166 0 G|0.993;A|0.007 0 0 0 0 0 RFX8 731220 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 102038877 102038877 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001145664 exon3 c.A130T p.R44W ATCTCCTGAATTC . 133 37 157 0 . 0 0 0 0 0 SLC9A4 389015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 103090435 103090435 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC9A4-92 NM_001011552 exon1 c.G217T p.V73F TATGAGGTCACTC . 95 37 102 0 . 0 0 0 0 0 RGPD3 653489 bcgsc.ca 37 2 107029644 107029644 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RGPD3-23 NM_001144013 exon22 c.T5162A p.I1721N AAGAAAATGAACT . 1002 221 983 7 . 0 0 0 0 0 RGPD3 653489 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 107041065 107041065 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RGPD3-23 NM_001144013 exon20 c.C3358T p.L1120L GCTTCAGGTTCAT . 27 12 40 0 . 0 0 0 0 0 ST6GAL2 84620 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 107423334 107423334 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ST6GAL2-191 NM_032528 exon6 c.G1390T p.E464X ACAGCTCCGTCTG . 157 68 196 0 . 0 0 0 0 0 ST6GAL2 84620 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 107459875 107459875 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ST6GAL2-191 NM_032528 exon2 c.G559T p.E187X CCTCCTCCAACAC . 119 31 124 2 . 0 0 0 0 0 RANBP2 5903 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 109384075 109384075 + Missense_Mutation SNP A A C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RANBP2-675 NM_006267 exon20 c.A7080C p.L2360F GATTTTACAGAAT . 217 72 213 0 . 0 0 0 0 0 IL36G 56300 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 113736244 113736244 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IL36G-91 NM_019618 exon2 c.G29T p.G10V CTGATGGTGGAGG . 163 75 191 0 . 0 0 0 0 0 DPP10 57628 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 116535388 116535388 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DPP10-142 NM_001178034 exon15 c.1351delC p.P451fs TCTTCTCCCAGAG . 106 44 116 0 . 0 0 0 0 0 CNTNAP5 129684 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 125192069 125192069 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CNTNAP5-524 NM_130773 exon5 c.G538A p.V180I TCAGATGTTGCTG . 71 28 93 0 . 0 0 0 0 0 CNTNAP5 129684 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 125284869 125284869 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CNTNAP5-524 NM_130773 exon10 c.C1482A p.P494P GTGCCCCGACAAT . 151 68 160 0 . 0 0 0 0 0 CNTNAP5 129684 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 125405388 125405388 + Silent SNP C C A rs200795882 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CNTNAP5-524 NM_130773 exon13 c.C1927A p.R643R CGAGTGCGGGGCG . 370 161 422 1 . 0 0 0 0 0 MYO7B 4648 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 128367426 128367426 + Silent SNP C C A rs202235279 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYO7B-47 NM_001080527 exon24 c.C3027A p.A1009A CCAGGCCGCCCTG . 163 36 173 0 C|0.999;T|0.000 0 0 0 0 0 UGGT1 56886 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 128890799 128890799 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . UGGT1-91 NM_020120 exon14 c.G1462C p.V488L CCTGGTGTTATTC . 117 34 120 0 . 0 0 0 0 0 POTEF 728378 bcgsc.ca 37 2 130832803 130832803 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . POTEF-27 NM_001099771 exon17 c.C2242T p.H748Y TCTGATGCATGCC . 489 68 443 3 . 0 0 0 0 0 CCDC74B 91409 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 130898790 130898790 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CCDC74B-90 NM_207310 exon4 c.G624T p.E208D GGGCTCCTCTTCC . 353 111 349 0 . 0 0 0 0 0 SMPD4 55627 broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 130911967 130911967 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SMPD4-90 NM_017951 exon16 c.G1659T p.L553L GGGTGACAGGAAG . 583 82 607 1 . 0 0 0 0 0 AMER3 205147 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 131519737 131519737 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_152698 exon2 c.G92T p.R31M CAGCCAGGGAGGG . 133 65 150 1 . 0 0 0 0 0 ARHGEF4 50649 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 131803668 131803668 + Missense_Mutation SNP G G A rs138286451 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARHGEF4-292 NM_015320 exon14 c.G1979A p.R660Q GCAACCGGCCCCA . 188 87 63 0 G|0.999;A|0.001 0 0 0 0 0 POTEE 445582 bcgsc.ca 37 2 132021613 132021613 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001083538 exon15 c.C2585A p.T862N CCCACACTGTGCC . 425 162 424 2 . 0 0 0 0 0 ANKRD30BL 554226 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 132912309 132912309 + RNA DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . . . . . TCTTTTCCTTATG . 229 34 272 0 . 0 0 0 0 0 GPR39 2863 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 133174919 133174919 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR39-226 NM_001508 exon1 c.T304A p.S102T ACCACGTCCAGCT . 161 73 180 0 . 0 0 0 0 0 NCKAP5 344148 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 134275043 134275043 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_207481 exon3 c.G55C p.D19H TGCTGTCTAGAGA . 71 13 75 0 . 0 0 0 0 0 MAP3K19 80122 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 135738654 135738654 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_025052 exon9 c.C3657G p.T1219T ACTGTGGGTGCCA . 83 18 56 0 . 0 0 0 0 0 THSD7B 80731 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 137814534 137814534 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . THSD7B-75 . . . . TGATGCTCCCATT . 134 23 186 0 . 0 0 0 0 0 THSD7B 80731 broad.mit.edu;bcgsc.ca 37 2 138400132 138400132 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . THSD7B-75 . . . . CTTACCCAGGAGA . 77 7 91 0 . 0 0 0 0 0 LRP1B 53353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 141055390 141055390 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRP1B-311 NM_018557 exon84 c.C12954A p.D4318E ACATCTGTCTCCG . 102 55 204 0 . 0 0 0 0 0 LRP1B 53353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 141116494 141116494 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRP1B-311 NM_018557 exon73 c.C11153A p.T3718K GGTCTCGTGGATG . 45 17 83 0 . 0 0 0 0 0 LRP1B 53353 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 141128388 141128388 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRP1B-311 NM_018557 exon71 c.G10899A p.K3633K ATCTTCCTTACAT . 83 33 83 1 . 0 0 0 0 0 LRP1B 53353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 141245192 141245192 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRP1B-311 NM_018557 exon58 c.C9237T p.D3079D CTTAATGTCACTT . 54 15 50 0 . 0 0 0 0 0 KIF5C 3800 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 149837965 149837965 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIF5C-69 NM_004522 exon14 c.G1459C p.V487L AAAGAAGTTCTCC . 140 51 117 0 . 0 0 0 0 0 RIF1 55183 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 152320981 152320981 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RIF1-300 NM_018151 exon30 c.G4947T p.V1649V AAATGTGTGTGAG . 78 21 107 0 . 0 0 0 0 0 RIF1 55183 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 152321633 152321633 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RIF1-300 NM_018151 exon30 c.G5599A p.G1867R TGTTTAGGAGACT . 47 15 48 0 . 0 0 0 0 0 NEB 4703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 152521284 152521284 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NEB-145 NM_004543 exon43 c.A5332G p.T1778A TCATGGTGATTTG . 163 76 189 0 . 0 0 0 0 0 NEB 4703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 152537258 152537258 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NEB-145 NM_004543 exon30 c.G3028T p.A1010S TCTGGGCCTGGTT . 151 54 121 0 . 0 0 0 0 0 NEB 4703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 152563490 152563490 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NEB-145 NM_004543 exon13 c.G1057T p.E353X TCTTTTCATAGTC . 38 11 41 0 . 0 0 0 0 0 CACNB4 785 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 152727077 152727077 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CACNB4-24 NM_001145798 exon8 c.G667T p.V223L CTAACACCACCGG . 333 100 251 0 . 0 0 0 0 0 RPRM 56475 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 154334873 154334873 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RPRM-204 NM_019845 exon1 c.G207T p.V69V GAAGACCACGGTG . 447 163 268 0 . 0 0 0 0 0 GALNT13 114805 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 154996920 154996920 + Silent SNP G G A rs114793552 bycluster;by1000genomes TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GALNT13-95 NM_052917 exon4 c.G213A p.Q71Q TGACCAGGAGAAA . 147 53 146 0 G|1.000;A|0.000 0 0 0 0 0 BAZ2B 29994 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 160205740 160205740 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BAZ2B-94 NM_013450 exon29 c.G4915C p.G1639R CCACACCAGTGGG . 50 21 41 0 . 0 0 0 0 0 SLC4A10 57282 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 162820704 162820704 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC4A10-229 NM_001178015 exon22 c.C2922A p.Y974X TATATACCTAAGG . 76 24 72 0 . 0 0 0 0 0 FAP 2191 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 163059625 163059625 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAP-93 NM_004460 exon13 c.G1078A p.D360N TGGCATCATAGCT . 95 29 100 0 . 0 0 0 0 0 GRB14 2888 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 165353720 165353720 + Splice_Site SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GRB14-420 NM_004490 exon12 c.1294+1G>T . GACATACCCATGT . 172 56 161 0 . 0 0 0 0 0 GRB14 2888 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 165353721 165353721 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GRB14-420 NM_004490 exon11 c.G1294T p.A432S ACATACCCATGTT . 172 56 163 1 . 0 0 0 0 0 SCN3A 6328 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 165947786 165947786 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SCN3A-141 NM_006922 exon28 c.C4877A p.A1626D ATCCTGGCAAGAC . 240 72 243 0 . 0 0 0 0 0 SCN3A 6328 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 166032795 166032795 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SCN3A-141 NM_001081676 exon3 c.C110A p.P37H TTTTTGGGCTTCT . 113 44 92 0 . 0 0 0 0 0 SCN2A 6326 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 166198817 166198817 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SCN2A-142 NM_001040143 exon14 c.G2400A p.G800G CACAGGGATCTTC . 82 14 73 0 . 0 0 0 0 0 SCN2A 6326 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 166198894 166198894 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SCN2A-142 NM_001040143 exon14 c.T2477C p.F826S ATATTTTTGATGG . 136 44 108 1 . 0 0 0 0 0 CSRNP3 80034 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 166535679 166535679 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CSRNP3-157 NM_001172173 exon7 c.G1174T p.G392C GGAGATGGCTTCG . 73 28 75 0 . 0 0 0 0 0 CSRNP3 80034 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 166535970 166535970 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CSRNP3-157 NM_001172173 exon7 c.G1465A p.G489S GCCTATGGTGCCT . 255 81 224 0 . 0 0 0 0 0 GALNT3 2591 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 166626967 166626967 + Nonsense_Mutation DEL T T - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GALNT3-92 NM_004482 exon2 c.244delA p.I82X CTCCTATTTGCAT . 137 36 119 0 . 0 0 0 0 0 TTC21B 79809 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 166781171 166781171 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTC21B-94 NM_024753 exon12 c.A1404T p.Q468H AAGAGGTTGCCCA . 132 56 133 0 . 0 0 0 0 0 SCN9A 6335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 167060640 167060640 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SCN9A-181 NM_002977 exon26 c.G4566T p.M1522I TTCTACCATCATG . 101 26 104 0 . 0 0 0 0 0 XIRP2 129446 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 168100697 168100697 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . XIRP2-104 NM_152381 exon9 c.C2795T p.T932I AGTACACACGAAC . 154 50 174 0 . 0 0 0 0 0 XIRP2 129446 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 168107417 168107417 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . XIRP2-104 NM_152381 exon9 c.C9515A p.P3172H CTTCCCCTTCTCC . 127 40 111 0 . 0 0 0 0 0 XIRP2 129446 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 168107715 168107715 + Nonsense_Mutation SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . XIRP2-104 NM_152381 exon9 c.T9813G p.Y3271X TACTTATGTTCAT . 175 65 137 0 . 0 0 0 0 0 CERS6 253782 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 169404169 169404169 + Silent SNP G G T rs112858320 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_203463 exon2 c.G234T p.P78P TGCTCCGCCCAAT . 105 45 94 0 G|0.997;A|0.003 0 0 0 0 0 G6PC2 57818 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 169759005 169759005 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . G6PC2-91 NM_021176 exon2 c.A269T p.Y90F AGATTTACCCAAA . 81 26 111 0 . 0 0 0 0 0 LRP2 4036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 170088312 170088312 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRP2-175 NM_004525 exon31 c.C5139A p.C1713X AAGCAGGCAGAGA . 443 151 419 0 . 0 0 0 0 0 SP5 389058 hgsc.bcm.edu 37 2 171573185 171573185 + Silent SNP G G T rs1134626 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SP5-90 NM_001003845 exon2 c.G468T p.P156P GCTGCCGCCAGGC . 20 17 0 0 G|0.766;T|0.234 0 0 0 0 0 HOXD13 3239 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 2 176957863 176957863 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HOXD13-658 NM_000523 exon1 c.G245T p.R82L CTGAGCGCACGGG . 47 14 14 0 . 0 0 0 0 0 HOXD8 3234 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 176996244 176996244 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HOXD8-90 NM_019558 exon2 c.C777A p.D259E CAAGGACAAATTT . 133 47 120 0 . 0 0 0 0 0 OSBPL6 114880 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179209068 179209068 + Missense_Mutation SNP C C A rs137879178 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OSBPL6-69 NM_001201480 exon12 c.C1043A p.A348E GGCTAGCGGCAGC . 120 38 99 0 C|0.999;T|0.001 0 0 0 0 0 FKBP7 51661 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179341878 179341878 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FKBP7-90 NM_001135212 exon2 c.G284T p.G95V TCTAGGCCTTTTA . 110 33 119 1 . 0 0 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179406032 179406032 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTN-636 NM_001267550 exon350 c.C97772A p.P32591H ACGATGGGTTTGG . 184 68 188 0 . 0 0 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179422421 179422421 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTN-636 NM_001267550 exon328 c.C87660A p.I29220I ATCACTGATGCCA . 287 92 220 0 . 0 0 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179426459 179426459 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTN-636 NM_001267550 exon326 c.C84400A p.R28134S CATAGCGGTTTTC . 160 52 192 0 . 0 0 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179426490 179426490 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTN-636 NM_001267550 exon326 c.T84369A p.S28123R ATACTCACTTCCT . 186 67 211 0 . 0 0 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179429435 179429435 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTN-636 NM_001267550 exon326 c.G81424T p.E27142X CATACTCAAGGCC . 126 22 132 0 . 0 0 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179430005 179430005 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTN-636 NM_001267550 exon326 c.G80854A p.V26952I CCGTTACGGTGTA . 289 95 259 0 . 0 0 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179437248 179437248 + Silent SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTN-636 NM_001267550 exon326 c.A73611G p.T24537T TGTGAGTGTGACA . 121 44 92 0 . 0 0 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179482958 179482958 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTN-636 NM_001267550 exon252 c.C47227A p.P15743T CTACTGGCTCACC . 99 33 109 0 . 0 0 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179505334 179505334 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTN-636 NM_001267550 exon221 c.C40657T p.P13553S CAACAGGTTTTGG . 88 29 106 0 . 0 0 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179517194 179517194 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTN-636 NM_001267550 exon202 c.C39118T p.P13040S TAACAGGTGTGAC . 94 30 91 0 . 0 0 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179560965 179560965 + Silent SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTN-636 NM_001267550 exon114 c.T30834A p.A10278A TTCTTCAGCTTTA . 19 7 22 0 . 0 0 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179598048 179598048 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTN-636 NM_001267550 exon54 c.G15972A p.E5324E GTGCAGCTCAGCT . 99 31 96 0 . 0 0 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179610937 179610937 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTN-636 NM_133379 exon46 c.C16190A p.A5397D AATACAGCATCTG . 62 23 69 0 . 0 0 0 0 0 TTN 7273 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 179616717 179616717 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTN-636 NM_133379 exon46 c.C10410A p.D3470E AAAGGCGTCACGT . 43 16 64 1 . 0 0 0 0 0 TTN 7273 bcgsc.ca;mdanderson.org 37 2 179634824 179634824 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTN-636 NM_001267550 exon36 c.C8604A p.V2868V TTGCCCGACCACA . 117 50 92 2 . 0 0 0 0 0 NCKAP1 10787 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 183817593 183817593 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NCKAP1-92 NM_205842 exon23 c.A2449T p.M817L CTTTCATTGCAGG . 152 46 122 0 . 0 0 0 0 0 ZNF804A 91752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 185800948 185800948 + Silent SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF804A-163 NM_194250 exon4 c.T825C p.T275T GAAAACTAACTCT . 60 19 63 0 . 0 0 0 0 0 FSIP2 401024 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 186670638 186670638 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FSIP2-90 NM_173651 exon17 c.T16872A p.N5624K TGAGAATGTATCA . 139 56 131 0 . 0 0 0 0 0 FAM171B 165215 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 187625878 187625878 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM171B-141 NM_177454 exon7 c.T1051C p.Y351H ACTGCCTACCACA . 423 175 377 0 . 0 0 0 0 0 CALCRL 10203 broad.mit.edu 37 2 188245197 188245197 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CALCRL-523 NM_001271751 exon6 c.G405A p.V135V TACCTTCACTTTC . 59 4 60 0 . 0 0 0 0 0 PMS1 5378 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 190719368 190719368 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PMS1-1396 NM_001128144 exon9 c.G1370C p.C457S AAACTTGTTTTAT . 98 30 101 0 . 0 0 0 0 0 MSTN 2660 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 190927030 190927030 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MSTN-650 NM_005259 exon1 c.G293T p.R98M TCATCCCTCTGGA . 208 87 176 1 . 0 0 0 0 0 MSTN 2660 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 190927320 190927320 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MSTN-650 NM_005259 exon1 c.G3T p.M1I TTTTTGCATGATT . 36 13 31 0 . 0 0 0 0 0 TMEFF2 23671 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 192863915 192863915 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMEFF2-524 NM_016192 exon6 c.T556A p.C186S GAGAACAGTCAAT . 97 34 80 0 . 0 0 0 0 0 TMEFF2 23671 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 193044393 193044393 + Splice_Site SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMEFF2-524 NM_016192 exon5 c.439+1G>T . CTCCTACCTCCAT . 151 60 207 0 . 0 0 0 0 0 DNAH7 56171 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 196737099 196737099 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DNAH7-102 NM_018897 exon40 c.A6508T p.T2170S CTGGAGTAGGCAA . 168 54 128 1 . 0 0 0 0 0 CCDC150 284992 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 197511082 197511082 + Silent SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001080539 exon2 c.A30G p.T10T AACTACAGTGTCC . 256 89 214 1 . 0 0 0 0 0 PLCL1 5334 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 198950268 198950268 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLCL1-228 NM_006226 exon2 c.C2027A p.P676Q CGGGTCCAATGAT . 78 20 93 0 . 0 0 0 0 0 NBEAL1 65065 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 204039945 204039945 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NBEAL1-92 NM_001114132 exon41 c.G6312T p.G2104G TGCGGGGGTCATG . 230 75 181 1 . 0 0 0 0 0 ZDBF2 57683 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 207169902 207169902 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZDBF2-3 NM_020923 exon5 c.G650T p.S217I CAGTTAGCAAATG . 117 36 129 0 . 0 0 0 0 0 ZDBF2 57683 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 207170268 207170268 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZDBF2-3 NM_020923 exon5 c.G1016A p.C339Y TGGATTGTACCCA . 46 13 29 0 . 0 0 0 0 0 ZDBF2 57683 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 207174022 207174022 + Silent SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZDBF2-3 NM_020923 exon5 c.T4770G p.T1590T CTCTACTCCCTCA . 46 18 44 0 . 0 0 0 0 0 ZDBF2 57683 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 207174333 207174333 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZDBF2-3 NM_020923 exon5 c.G5081T p.R1694I ATCCAAGAAATGC . 69 28 50 0 . 0 0 0 0 0 ADAM23 8745 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 207454220 207454220 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADAM23-228 NM_003812 exon21 c.G1940T p.W647L ACCGGTGGATTCA . 104 38 81 0 . 0 0 0 0 0 DYTN 391475 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 207527859 207527859 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DYTN-23 NM_001093730 exon11 c.C1401A p.S467R TGTTTGGCTTTGT . 307 100 264 0 . 0 0 0 0 0 FASTKD2 22868 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 207655353 207655353 + Silent SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FASTKD2-118 NM_001136193 exon11 c.A1956G p.R652R CCCCAGAGGATTC . 59 13 63 0 . 0 0 0 0 0 CRYGC 1420 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 208992943 208992943 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CRYGC-90 NM_020989 exon3 c.T509C p.V170A TCCACCACTCTCC . 102 40 93 1 . 0 0 0 0 0 CPS1 1373 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 211457659 211457659 + Silent SNP C C G rs148322072 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CPS1-162 NM_001122633 exon12 c.C1161G p.T387T GGTCACCCCGGGG . 48 21 61 0 C|1.000;T|0.000 0 0 0 0 0 CPS1 1373 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 211512667 211512667 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CPS1-162 NM_001122633 exon27 c.G3240T p.K1080N TGTCAAGATCATG . 475 148 459 2 . 0 0 0 0 0 CPS1 1373 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 211527846 211527846 + Splice_Site SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CPS1-162 NM_001122633 exon34 c.3946-1G>T . CCAACAGGCTCCC . 41 12 33 0 . 0 0 0 0 0 ERBB4 2066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 212285242 212285242 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ERBB4-1461 NM_001042599 exon25 c.A3059T p.E1020V TACTCCTCAGCAT . 76 38 95 0 . 0 0 0 0 0 ERBB4 2066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 212578300 212578300 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ERBB4-1461 NM_001042599 exon8 c.G957T p.G319G TTTAATCCCATTT . 99 38 63 0 . 0 0 0 0 0 ERBB4 2066 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 212589908 212589908 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ERBB4-1461 NM_001042599 exon6 c.G634T p.V212L CACACACCGTCCT . 189 81 184 0 . 0 0 0 0 0 ERBB4 2066 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 212812187 212812187 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ERBB4-1461 NM_001042599 exon3 c.G389T p.G130V TGAAGTCCAAAGT . 116 44 90 1 . 0 0 0 0 0 PRKAG3 53632 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 219695074 219695074 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRKAG3-659 NM_017431 exon4 c.C260T p.T87I AGCCCGGTGGACT . 203 63 153 0 . 0 0 0 0 0 WNT10A 80326 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 219746981 219746981 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WNT10A-523 NM_025216 exon2 c.A212G p.Q71R GGCGGCAGATGGA . 312 112 248 1 . 0 0 0 0 0 ANKZF1 55139 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 220098512 220098512 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ANKZF1-92 NM_001042410 exon8 c.C895G p.P299A CGTGCTCCCCGCT . 115 23 100 0 . 0 0 0 0 0 PTPRN 5798 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 2 220159708 220159708 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PTPRN-229 NM_002846 exon19 c.G2664A p.L888L GAAGTCCAGCAGG . 109 40 28 0 . 0 0 0 0 0 PTPRN 5798 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 220172174 220172174 + Missense_Mutation SNP A A C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PTPRN-229 NM_002846 exon3 c.T272G p.M91R TGGGACATGAGTT . 57 22 55 1 . 0 0 0 0 0 ASIC4 55515 ucsc.edu;bcgsc.ca 37 2 220379239 220379239 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_182847 exon1 c.G174T p.R58R GCAGCGGCAGAGG . 359 129 203 2 . 0 0 0 0 0 CHPF 79586 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 220405282 220405282 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CHPF-90 NM_024536 exon4 c.G1151T p.R384L GCCGGGCGGGATG . 191 61 109 0 . 0 0 0 0 0 OBSL1 23363 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 220419228 220419228 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OBSL1-71 NM_015311 exon15 c.C4844A p.S1615Y CGCAGGGAATCCG . 384 130 318 1 . 0 0 0 0 0 OBSL1 23363 hgsc.bcm.edu 37 2 220435375 220435375 + Silent SNP G G A rs1061399 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OBSL1-71 NM_001173431 exon1 c.C580T p.L194L TGCGCAGTGCCAG . 7 7 0 0 G|0.621;A|0.379 0 0 0 0 0 SLC4A3 6508 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 220493241 220493241 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC4A3-157 NM_005070 exon3 c.G166T p.A56S CCCCCGGCCTGGG . 467 161 316 0 . 0 0 0 0 0 SCG2 7857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 224463929 224463929 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SCG2-69 NM_003469 exon2 c.G72A p.G24G TTCAGCCCCAGAG . 177 63 154 0 . 0 0 0 0 0 SPHKAP 80309 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 228858308 228858308 + Missense_Mutation SNP G G T rs192502309 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPHKAP-167 NM_001142644 exon9 c.C4663A p.L1555I TGCCAAGACTGCT . 200 69 163 0 G|0.999;T|0.001 0 0 0 0 0 SPHKAP 80309 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 228882596 228882596 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPHKAP-167 NM_030623 exon7 c.G2974T p.V992L TCCTCACAGCGGT . 105 34 103 1 . 0 0 0 0 0 SPHKAP 80309 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 228883407 228883407 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPHKAP-167 NM_030623 exon7 c.C2163G p.F721L CTTCTTGAACGTG . 118 37 97 0 . 0 0 0 0 0 SPHKAP 80309 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 228883709 228883709 + Nonsense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPHKAP-167 NM_030623 exon7 c.A1861T p.K621X CCTCCTTGAGCAA . 157 57 140 0 . 0 0 0 0 0 SPHKAP 80309 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 228883760 228883760 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPHKAP-167 NM_030623 exon7 c.G1810C p.G604R CTAAACCACAAAG . 102 38 111 0 . 0 0 0 0 0 SPHKAP 80309 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 228884194 228884194 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPHKAP-167 NM_030623 exon7 c.G1376A p.S459N GCATCACTGCCAT . 89 35 69 0 . 0 0 0 0 0 SPHKAP 80309 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 228884765 228884765 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPHKAP-167 NM_030623 exon7 c.G805T p.E269X TGTCTTCCAAAGC . 109 34 95 0 . 0 0 0 0 0 PID1 55022 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 229890643 229890643 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PID1-94 NM_017933 exon4 c.A452T p.E151V GTGGCCTCCCCTT . 254 80 219 0 . 0 0 0 0 0 TRIP12 9320 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 230723756 230723756 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRIP12-572 NM_004238 exon3 c.G633C p.S211S GGAGGCCGAGGCT . 88 27 72 0 . 0 0 0 0 0 C2orf72 257407 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 231906104 231906104 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001144994 exon2 c.728delC p.A243fs TTGCTGCCTGCAG . 108 35 73 0 . 0 0 0 0 0 ALPP 250 bcgsc.ca 37 2 233245385 233245385 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ALPP-91 NM_001632 exon8 c.G918C p.L306L CACACTGGACCCC . 528 185 405 4 . 0 0 0 0 0 ALPPL2 251 broad.mit.edu 37 2 233273466 233273466 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ALPPL2-91 NM_031313 exon8 c.G909C p.L303L CACACTGGACCCC . 125 74 82 1 . 0 0 0 0 0 ALPI 248 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 233322794 233322794 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ALPI-90 NM_001631 exon8 c.C943A p.L315M GCTGCCCTGCGCC . 505 180 339 1 . 0 0 0 0 0 SAG 6295 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 234229340 234229340 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SAG-23 NM_000541 exon5 c.C246A p.T82T CTTGACCTTCCGC . 149 55 118 0 . 0 0 0 0 0 UGT1A5 54579 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 234621950 234621950 + Missense_Mutation SNP C C A rs200200998 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . UGT1A5-3 NM_019078 exon1 c.C313A p.H105N ACAGAACATCTTC . 116 36 128 0 C|1.000;T|0.000 0 0 0 0 0 SH3BP4 23677 ucsc.edu;bcgsc.ca 37 2 235951205 235951205 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SH3BP4-94 NM_014521 exon4 c.G1792T p.E598X GACCAGGAGGCCA . 159 57 147 2 . 0 0 0 0 0 COL6A3 1293 ucsc.edu;bcgsc.ca;mdanderson.org 37 2 238280884 238280884 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COL6A3-526 NM_004369 exon9 c.T3776A p.V1259D TAGTCAACCAGCC . 110 55 120 1 . 0 0 0 0 0 TRAF3IP1 26146 broad.mit.edu 37 2 239237714 239237715 + Frame_Shift_Del DEL GA GA - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRAF3IP1-228 NM_015650 exon5 c.646_647del p.216_216del GAAGGGGAGAGAG . 249 7 198 0 . 0 0 0 0 0 NDUFA10 4705 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 240951052 240951052 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NDUFA10-514 NM_004544 exon6 c.C731G p.T244S AGAAAGGTTTTCT . 92 31 125 1 . 0 0 0 0 0 OTOS 150677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 241078654 241078654 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OTOS-68 NM_148961 exon4 c.G203A p.R68Q AAGGTTCGGGCCA . 229 31 227 0 . 0 0 0 0 0 KIF1A 547 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 241658532 241658532 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIF1A-91 NM_001244008 exon47 c.G5105T p.R1702L TAGGGGCGCCGCA . 269 104 164 0 . 0 0 0 0 0 KIF1A 547 hgsc.bcm.edu 37 2 241696843 241696843 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIF1A-91 NM_001244008 exon27 c.G2751T p.E917D CTCATCCTCCTCC . 291 13 225 0 . 0 0 0 0 0 AGXT 189 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 241812461 241812461 + Missense_Mutation SNP G G T rs34664134 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AGXT-90 NM_000030 exon5 c.G590T p.R197L TGGACCGGCAAGG . 141 46 107 0 G|0.993;A|0.007 0 0 0 0 0 PASK 23178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 242066763 242066763 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PASK-536 NM_015148 exon10 c.G1567T p.E523X GGCTCTCTATTGC . 106 41 87 0 . 0 0 0 0 0 HDLBP 3069 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 242192402 242192402 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HDLBP-290 NM_005336 exon11 c.A1342T p.R448W GGTGCCTGTGGAA . 220 68 192 0 . 0 0 0 0 0 ATG4B 23192 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 242606247 242606247 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_178326 exon8 c.G726T p.T242T GGAGACGCTGAAG . 63 22 48 0 . 0 0 0 0 0 SIRPG 55423 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 1610940 1610940 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SIRPG-23 NM_018556 exon5 c.C1094G p.S365C GTAAGGGATGATG . 40 12 78 0 . 0 0 0 0 0 TGM6 343641 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 2398147 2398147 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TGM6-94 NM_198994 exon10 c.A1606G p.I536V GCCACCATCCTCT . 40 11 26 0 . 0 0 0 0 0 TMC2 117532 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 2542507 2542507 + Silent SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMC2-93 NM_080751 exon4 c.A405T p.S135S CAGGTCATCCTCC . 120 26 166 0 . 0 0 0 0 0 PTPRA 5786 broad.mit.edu 37 20 3008372 3008372 + Missense_Mutation SNP C C G rs138028158 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PTPRA-227 NM_002836 exon24 c.C1805G p.S602C AGGACTCCTATAT . 98 4 88 0 C|0.999;G|0.001 0 0 0 0 0 SLC4A11 83959 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 3218585 3218585 + Silent SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC4A11-91 NM_001174090 exon1 c.T126A p.A42A CGCTGCAGCGAGA . 54 17 88 0 . 0 0 0 0 0 ATRN 8455 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 3624815 3624815 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ATRN-154 NM_139321 exon28 c.C4065T p.P1355P CAAACCCATTGCA . 78 25 127 0 . 0 0 0 0 0 PROKR2 128674 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 5283022 5283022 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PROKR2-94 NM_144773 exon2 c.G819T p.T273T CAGGACCGTCTTC . 132 42 167 0 . 0 0 0 0 0 CHGB 1114 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 5903995 5903995 + Missense_Mutation SNP G G T rs200027232 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CHGB-96 NM_001819 exon4 c.G1205T p.G402V GATATGGTGAAGA . 21 5 51 0 G|0.999;A|0.001 0 0 0 0 0 HAO1 54363 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 7875859 7875859 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HAO1-93 NM_017545 exon5 c.G734T p.R245M GCCTCCCTGGCAT . 68 17 88 0 . 0 0 0 0 0 PLCB1 23236 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 8770166 8770166 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLCB1-297 NM_015192 exon30 c.G3280T p.G1094C TTTAGGGAGAAGA . 91 35 155 0 . 0 0 0 0 0 PLCB4 5332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 9417684 9417684 + Silent SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLCB4-274 NM_001172646 exon29 c.A2649G p.K883K TTCCAAAAATGAC . 85 24 133 0 . 0 0 0 0 0 PAK7 57144 broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 9543657 9543657 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PAK7-1434 NM_177990 exon6 c.G1497T p.R499R GTAATCCCGCATG . 107 32 124 1 . 0 0 0 0 0 ESF1 51575 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 13752040 13752040 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ESF1-91 NM_001276380 exon6 c.G1340A p.S447N ATTTTACTAGCTG . 71 14 90 0 . 0 0 0 0 0 RRBP1 6238 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 17617312 17617312 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RRBP1-92 NM_004587 exon6 c.G948T p.V316V CCGGGCCACCAGC . 81 20 89 0 . 0 0 0 0 0 DZANK1 55184 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 18434400 18434400 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001099407 exon5 c.G450T p.W150C AACATTCCAGCTG . 48 11 73 0 . 0 0 0 0 0 C20orf78 100128496 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 18790706 18790706 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C20orf78-71 NM_001242671 exon3 c.A170T p.E57V CTGTCTTCTGAGG . 103 31 164 0 . 0 0 0 0 0 RALGAPA2 57186 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 20501596 20501596 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RALGAPA2-24 NM_020343 exon31 c.C4049T p.S1350L TCTGCTGATGAAT . 95 24 130 0 . 0 0 0 0 0 FOXA2 3170 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 20 22563160 22563160 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FOXA2-228 NM_021784 exon2 c.C720T p.T240T GTGCAGGGTCCAG . 88 48 101 0 . 0 0 0 0 0 CD93 22918 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 23065618 23065618 + Silent SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CD93-153 NM_012072 exon1 c.T1212C p.D404D TGAGCCATCTGTG . 224 101 237 0 . 0 0 0 0 0 CST8 10047 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 23472348 23472348 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CST8-90 NM_005492 exon2 c.C44T p.P15L CCATTCCCCTGGC . 147 73 121 1 . 0 0 0 0 0 CST8 10047 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 23472361 23472361 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CST8-90 NM_005492 exon2 c.G57T p.V19V CCTGGTGGCCAGG . 164 43 129 0 . 0 0 0 0 0 CST9 128822 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 23584212 23584212 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CST9-91 NM_001008693 exon2 c.T415C p.C139R CCATGCAGCATCC . 216 45 231 0 . 0 0 0 0 0 FRG1B 284802 bcgsc.ca 37 20 29628283 29628283 + RNA SNP G G C rs200164543 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FRG1B-22 . . . . AGCAGGGGACATA . 530 14 584 5 . 0 0 0 0 0 BCL2L1 598 broad.mit.edu;bcgsc.ca 37 20 30309465 30309465 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BCL2L1-1084 NM_138578 exon2 c.557delG p.G186fs CAGCCGCCGTTCT . 77 11 82 0 . 0 0 0 0 0 BPIFB6 128859 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 31631832 31631832 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_174897 exon15 c.G1341T p.M447I CCTGATGCTGGAC . 88 17 88 0 . 0 0 0 0 0 CDK5RAP1 51654 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 31967333 31967333 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CDK5RAP1-230 NM_016408 exon8 c.C1041G p.V347V TCTGGAGACCTGA . 131 17 143 0 . 0 0 0 0 0 PIGU 128869 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 33169461 33169461 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PIGU-226 NM_080476 exon10 c.C942A p.F314L CATGAAGAAGATG . 134 9 133 0 . 0 0 0 0 0 NCOA6 23054 broad.mit.edu 37 20 33345744 33345744 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NCOA6-292 NM_014071 exon7 c.G807A p.Q269Q CTGCTGCTGTTGT . 88 3 75 1 . 0 0 0 0 0 ACSS2 55902 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 33508448 33508448 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ACSS2-226 NM_001076552 exon10 c.G1118T p.G373V ACATTGGTTGGAT . 105 42 124 0 . 0 0 0 0 0 CEP250 11190 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 34090551 34090551 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CEP250-27 NM_007186 exon30 c.G4354T p.E1452X CAACGGGAAATGC . 149 77 194 0 . 0 0 0 0 0 RBM12 10137 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 34242103 34242103 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RBM12-93 NM_001198840 exon2 c.A1142T p.Q381L ACCCACTGTCTTT . 90 17 101 0 . 0 0 0 0 0 PHF20 51230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 34535448 34535448 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PHF20-515 NM_016436 exon18 c.C2938T p.P980S GAGCCCCCTGAGC . 112 50 90 0 . 0 0 0 0 0 CNBD2 140894 broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 34568458 34568458 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_080834 exon4 c.C321T p.V107V GGCCGTCTGTAAC . 193 46 162 1 . 0 0 0 0 0 PPP1R16B 26051 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 37531363 37531363 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PPP1R16B-228 NM_001172735 exon6 c.G624A p.M208I GCAGATGATTGCG . 217 91 173 1 . 0 0 0 0 0 MAFB 9935 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 20 39316536 39316536 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MAFB-846 NM_005461 exon1 c.C955G p.P319A ACTCGGGAGAGGA . 59 21 59 0 . 0 0 0 0 0 PTPRT 11122 broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 40980823 40980823 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PTPRT-664 NM_007050 exon10 c.G1663T p.G555C ACAGACCCACAAA . 154 66 145 2 . 0 0 0 0 0 L3MBTL1 26013 hgsc.bcm.edu 37 20 42143400 42143400 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . L3MBTL1-227 NM_032107 exon4 c.G420T p.A140A CGAGGCGGGCCCC . 102 60 6 0 . 0 0 0 0 0 MYBL2 4605 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 42315672 42315672 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYBL2-415 NM_002466 exon5 c.G460C p.G154R GTGCTGGGCAACC . 118 57 87 0 . 0 0 0 0 0 TOX2 84969 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 42683068 42683068 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TOX2-91 NM_001098798 exon5 c.C808T p.Q270X GACACTCAGGCCG . 174 75 170 0 . 0 0 0 0 0 WISP2 8839 hgsc.bcm.edu 37 20 43348703 43348703 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WISP2-130 NM_003881 exon2 c.C226A p.L76M CAGGGCCTGGTCT . 24 14 3 0 . 0 0 0 0 0 RIMS4 140730 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 43384921 43384921 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RIMS4-94 NM_001205317 exon6 c.G667C p.E223Q CCAGCTCCTCCAG . 139 63 147 0 . 0 0 0 0 0 DNTTIP1 116092 hgsc.bcm.edu 37 20 44420682 44420682 + Silent SNP T T C rs2664591 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DNTTIP1-91 NM_052951 exon1 c.T39C p.P13P GGGACCTAGCGGG . 10 10 0 0 T|0.311;C|0.689 0 0 0 0 0 ZNF334 55713 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 45130422 45130422 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF334-92 NM_018102 exon5 c.G1556T p.C519F TCACTACACTCAT . 127 27 134 1 . 0 0 0 0 0 OCSTAMP 128506 broad.mit.edu;mdanderson.org 37 20 45170432 45170432 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_080721 exon3 c.C1182G p.A394A ACGCCGGGCGGGT . 39 15 14 0 . 0 0 0 0 0 OCSTAMP 128506 ucsc.edu;bcgsc.ca 37 20 45174698 45174698 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_080721 exon2 c.G315T p.L105L TGCAAACAGGCAG . 166 77 160 3 . 0 0 0 0 0 SLC2A10 81031 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 45354555 45354555 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC2A10-91 NM_030777 exon2 c.G880T p.A294S GACCGTGCAGGCC . 167 39 149 0 . 0 0 0 0 0 EYA2 2139 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 45700881 45700881 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EYA2-523 NM_172110 exon6 c.G473T p.S158I TCGGGAGTGTGCA . 163 29 137 1 . 0 0 0 0 0 EYA2 2139 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 45771748 45771748 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EYA2-523 NM_172110 exon10 c.C939A p.F313L GATCTTCAACCTT . 137 65 151 0 . 0 0 0 0 0 ZMYND8 23613 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 45976616 45976616 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZMYND8-252 NM_183048 exon2 c.C69G p.I23M AGTAGAGATATCC . 54 15 53 0 . 0 0 0 0 0 SULF2 55959 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 46311853 46311853 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SULF2-293 NM_001161841 exon7 c.G949T p.D317Y CGTGGTCGGCGGT . 279 55 212 0 . 0 0 0 0 0 SULF2 55959 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 46385940 46385940 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SULF2-293 NM_001161841 exon2 c.G168T p.V56V CAGCTCCACATCC . 73 31 62 0 . 0 0 0 0 0 PREX1 57580 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 47262418 47262418 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PREX1-231 NM_020820 exon26 c.C3483G p.H1161Q GGTGTCGTGGCCT . 154 65 188 1 . 0 0 0 0 0 PREX1 57580 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 47317415 47317415 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PREX1-231 NM_020820 exon7 c.C793A p.L265I CTGTGAGGTTGGA . 127 63 102 0 . 0 0 0 0 0 B4GALT5 9334 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 48257052 48257052 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . B4GALT5-91 NM_004776 exon6 c.A757T p.R253W AATGCCTCGGCAT . 55 27 50 0 . 0 0 0 0 0 SALL4 57167 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 50408431 50408431 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SALL4-92 NM_020436 exon2 c.C591A p.S197R ATCCGCGCTCCGC . 88 15 88 0 . 0 0 0 0 0 PCK1 5105 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 56139391 56139391 + Silent SNP G G T rs200264001 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCK1-227 NM_002591 exon7 c.G1128T p.P376P TGAGCCGCTAGCT . 268 54 277 0 G|0.999;A|0.000 0 0 0 0 0 GNAS 2778 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 57428374 57428374 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GNAS-4767 NM_080425 exon1 c.54delC p.I18fs CGATATCCCCCCT . 111 51 147 0 . 0 0 0 0 0 ZNF831 128611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 57768917 57768917 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF831-126 NM_178457 exon1 c.C2843A p.A948E CTCAGGCAGAGAC . 68 34 74 0 . 0 0 0 0 0 ZNF831 128611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 57769069 57769069 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF831-126 NM_178457 exon1 c.G2995T p.G999C TCCCCAGGTGAGG . 34 13 32 0 . 0 0 0 0 0 ZNF831 128611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 57769218 57769218 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF831-126 NM_178457 exon1 c.C3144A p.P1048P GGCTCCCAGGGAG . 93 20 66 0 . 0 0 0 0 0 ZNF831 128611 broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 57828115 57828115 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF831-126 NM_178457 exon4 c.C4110A p.D1370E AGGTGACTGCAGA . 187 89 146 1 . 0 0 0 0 0 ZNF831 128611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 57829495 57829495 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF831-126 NM_178457 exon5 c.T4731A p.A1577A TTCAGCTAGTTCA . 211 86 229 0 . 0 0 0 0 0 PHACTR3 116154 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 58349336 58349336 + Missense_Mutation SNP G G T rs143127476 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PHACTR3-93 NM_080672 exon7 c.G965T p.R322L AGAAGCGGCTGGA . 117 27 124 0 G|0.999;A|0.000 0 0 0 0 0 FAM217B 63939 broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 58519072 58519072 + Missense_Mutation SNP A A C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_022106 exon4 c.A74C p.Q25P AATCCCAAGTACC . 134 25 191 2 . 0 0 0 0 0 CDH4 1002 broad.mit.edu;bcgsc.ca;mdanderson.org 37 20 60448951 60448951 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CDH4-282 NM_001794 exon7 c.C1045A p.R349R CTGGACCGAGAGG . 150 40 102 1 . 0 0 0 0 0 TAF4 6874 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 60581714 60581714 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TAF4-93 NM_003185 exon7 c.C2075T p.A692V GTGAGCGCAGTGG . 175 42 19 0 . 0 0 0 0 0 LAMA5 3911 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 60913072 60913072 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LAMA5-93 NM_005560 exon14 c.G1891T p.A631S GCTCACCTTGGCA . 236 119 116 0 . 0 0 0 0 0 OGFR 11054 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 61444261 61444261 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OGFR-68 NM_007346 exon7 c.G1294T p.G432C GAAGTGGGCGGTC . 123 32 56 0 . 0 0 0 0 0 DIDO1 11083 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 61512594 61512594 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DIDO1-96 NM_001193369 exon16 c.G4714T p.E1572X CCCCCTCACCGGT . 42 9 18 0 . 0 0 0 0 0 YTHDF1 54915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 61834292 61834292 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . YTHDF1-92 NM_017798 exon4 c.A1000G p.R334G CGTTTCTGTTGCG . 72 21 62 0 . 0 0 0 0 0 BIRC7 79444 broad.mit.edu 37 20 61869765 61869765 + Missense_Mutation SNP G G T rs199795769 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BIRC7-659 NM_139317 exon3 c.G467T p.R156L TGCTCCGGTCAAA . 46 10 38 1 . 0 0 0 0 0 BIRC7 79444 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 61869820 61869820 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BIRC7-659 NM_139317 exon3 c.G522T p.L174L GCTGCTGGGCTCC . 88 42 72 0 . 0 0 0 0 0 ARFGAP1 55738 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 61919061 61919061 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARFGAP1-91 NM_175609 exon14 c.G1081A p.D361N TGCGCGGACACCT . 167 39 125 0 . 0 0 0 0 0 TPTE 7179 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 21 10920084 10920084 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TPTE-344 NM_199261 exon19 c.G1170T p.Q390H ACTTACCTGAGAA . 19 7 36 0 . 0 0 0 0 0 TPTE 7179 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 21 10944670 10944670 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TPTE-344 NM_199261 exon11 c.C564A p.P188P ATACCTGGGAATA . 304 29 359 0 . 0 0 0 0 0 BAGE2 85319 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 21 11058188 11058188 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_182482 exon3 c.G252T p.Q84H TGTGTTCTGGACA . 220 22 249 0 . 0 0 0 0 0 GRIK1 2897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 31311813 31311813 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GRIK1-137 NM_175611 exon1 c.G6C p.E2D GCCGTGCTCCATC . 99 69 79 0 . 0 0 0 0 0 KRTAP24-1 643803 broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 31655215 31655215 + Silent SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KRTAP24-1-68 NM_001085455 exon1 c.T36A p.P12P GACACCAGGATAG . 276 181 219 2 . 0 0 0 0 0 KRTAP13-3 337960 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 31797786 31797786 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KRTAP13-3-92 NM_181622 exon1 c.C445G p.P149A AGATTGGATGGCA . 111 83 116 0 . 0 0 0 0 0 KRTAP11-1 337880 ucsc.edu;bcgsc.ca 37 21 32253540 32253540 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KRTAP11-1-91 NM_175858 exon1 c.C304A p.R102R GCGGCCGGCTGTA . 363 261 289 3 . 0 0 0 0 0 DSCR6 53820 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 38385914 38385914 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DSCR6-153 NM_018962 exon3 c.G235T p.V79L CATCCTGTAAGGT . 109 81 85 0 . 0 0 0 0 0 DSCAM 1826 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 41719682 41719682 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DSCAM-101 NM_001271534 exon6 c.G1125T p.M375I TTTGACCATGTGA . 152 115 158 0 . 0 0 0 0 0 WDR4 10785 bcgsc.ca 37 21 44296862 44296862 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WDR4-91 NM_018669 exon2 c.C105G p.L35L GATGAAGAGGCTG . 28 19 35 1 . 0 0 0 0 0 TRPM2 7226 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 45795727 45795727 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRPM2-92 NM_003307 exon6 c.C783T p.P261P CTTCCCCGCCGAG . 161 120 133 0 . 0 0 0 0 0 TRPM2 7226 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 45845667 45845667 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRPM2-92 NM_003307 exon25 c.C3752A p.P1251H ACTGCCCTGTCAC . 259 171 108 0 . 0 0 0 0 0 TSPEAR 54084 ucsc.edu;bcgsc.ca 37 21 45987802 45987802 + Missense_Mutation SNP C C A rs151001222 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TSPEAR-244 NM_144991 exon2 c.G170T p.R57L AGTCCCCGTGCAC . 189 150 139 2 C|0.998;T|0.002 0 0 0 0 0 KRTAP10-9 386676 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 46047799 46047799 + Silent SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_198690 exon1 c.T711G p.P237P CCGCCCTGTGTGC . 189 144 97 0 . 0 0 0 0 0 C21orf67 84536 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 46354995 46354995 + RNA SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . . . . . CATCCCCTCTCGT . 75 58 90 1 . 0 0 0 0 0 COL6A1 1291 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 47423043 47423043 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COL6A1-91 NM_001848 exon34 c.G2444T p.C815F AGAAGTGTCCAGA . 184 125 121 0 . 0 0 0 0 0 PCNT 5116 broad.mit.edu 37 21 47831434 47831434 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCNT-141 NM_006031 exon28 c.C5447A p.A1816D GCCAGGCCCTGGA . 66 6 23 0 . 0 0 0 0 0 CLTCL1 8218 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 19220842 19220842 + Splice_Site SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CLTCL1-230 NM_001835 exon10 c.1369-1G>T . CTCCAGCTGTGGT . 89 68 81 1 . 0 0 0 0 0 LZTR1 8216 broad.mit.edu 37 22 21343966 21344002 + In_Frame_Del DEL GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LZTR1-280 NM_006767 exon7 c.646_651del p.216_217del TGCTGGGAGGAGG . 43 9 41 0 . 0 0 0 0 0 PRAME 23532 ucsc.edu;bcgsc.ca 37 22 22890510 22890510 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRAME-515 NM_206954 exon6 c.C1509A p.C503X ACAGGGGCACAGG . 122 79 126 2 . 0 0 0 0 0 PRAME 23532 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 22890729 22890729 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRAME-515 NM_206954 exon6 c.C1290A p.L430L CCCGATGAGGTGC . 70 40 50 0 . 0 0 0 0 0 IGLL3P 91353 ucsc.edu;bcgsc.ca;mdanderson.org 37 22 25714246 25714246 + RNA SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IGLL3P-91 . . . . CGCGGCTCCTGGA . 162 110 121 0 . 0 0 0 0 0 MYO18B 84700 ucsc.edu;bcgsc.ca 37 22 26164759 26164759 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYO18B-142 NM_032608 exon4 c.G876T p.T292T AAACACGGTGGAA . 146 92 161 3 . 0 0 0 0 0 MYO18B 84700 broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 26422797 26422797 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYO18B-142 NM_032608 exon43 c.C6857A p.A2286D CTGGGGCCTCCAC . 101 68 130 1 . 0 0 0 0 0 SEZ6L 23544 broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 26761520 26761520 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SEZ6L-95 NM_021115 exon13 c.C2782G p.P928A CCCCTGCCCGTGT . 117 81 93 1 . 0 0 0 0 0 MN1 4330 hgsc.bcm.edu 37 22 28196123 28196123 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MN1-993 NM_002430 exon1 c.G409T p.G137C CGCCGCCGTAGCC . 13 11 1 0 . 0 0 0 0 0 TTC28 23331 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 28559432 28559432 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001145418 exon6 c.G1089A p.V363V AATATACACAGCT . 125 74 128 0 . 0 0 0 0 0 AP1B1 162 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 29745300 29745300 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AP1B1-92 NM_001127 exon11 c.G1344T p.M448I CCAGATCATGGCA . 73 47 103 0 . 0 0 0 0 0 NEFH 4744 hgsc.bcm.edu 37 22 29885581 29885604 + In_Frame_Del DEL AGGCCAAGTCCCCAGAGAAGGAAG AGGCCAAGTCCCCAGAGAAGGAAG - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 AGGCCAAGTCCCCAGAGAAGGAAG AGGCCAAGTCCCCAGAGAAGGAAG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NEFH-90 NM_021076 exon4 c.1952_1975del p.651_659del CTGAGAAGGCCAA . 261 89 268 0 . 0 0 0 0 0 NEFH 4744 broad.mit.edu 37 22 29885599 29885604 + In_Frame_Del DEL AGGAAG AGGAAG - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NEFH-90 NM_021076 exon4 c.1970_1975del p.657_659del CAGAGAAGGAAGA . 304 10 292 0 . 0 0 0 0 0 C22orf42 150297 ucsc.edu;bcgsc.ca 37 22 32547007 32547007 + Splice_Site SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C22orf42-92 NM_001010859 exon7 c.466-1G>C . TATTTCCTGCAGT . 270 185 317 2 . 0 0 0 0 0 BPIFC 254240 broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 32828365 32828365 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_174932 exon10 c.G1144C p.D382H CGAAGTCCATGGA . 208 152 173 2 . 0 0 0 0 0 LARGE 9215 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 33712075 33712075 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LARGE-92 NM_004737 exon12 c.G1447T p.D483Y ACCTGTCCATGGA . 187 127 186 1 . 0 0 0 0 0 TMPRSS6 164656 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 22 37465237 37465237 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMPRSS6-292 NM_153609 exon16 c.G2016A p.L672L GAGCTGCAGCAGC . 139 78 57 0 . 0 0 0 0 0 SSTR3 6753 hgsc.bcm.edu 37 22 37603296 37603296 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SSTR3-522 NM_001051 exon2 c.G547A p.G183R GCACTCCCGAGAA . 53 16 0 0 . 0 0 0 0 0 SH3BP1 23616 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 38043305 38043305 + Silent SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SH3BP1-90 NM_018957 exon12 c.A1068G p.P356P GCTGCCAGAGCCT . 98 41 100 0 . 0 0 0 0 0 APOBEC3F 200316 bcgsc.ca 37 22 39440149 39440149 + Missense_Mutation SNP C C T rs5750728 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . APOBEC3F-226 NM_001006666 exon3 c.C233T p.A78V AGTGCGCCCCACC . 182 7 174 0 C|0.534;T|0.466 0 0 0 0 0 FAM83F 113828 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 40417793 40417793 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM83F-153 NM_138435 exon4 c.G1279A p.A427T GGAGAAGCGGCCC . 154 37 88 0 . 0 0 0 0 0 XPNPEP3 63929 broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 41278040 41278040 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . XPNPEP3-68 NM_022098 exon3 c.A448T p.I150L AAAGCCATACTTT . 108 49 127 1 . 0 0 0 0 0 ZC3H7B 23264 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 41723297 41723297 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZC3H7B-90 NM_017590 exon5 c.G373C p.A125P GCACGCGCTCTCA . 135 34 96 1 . 0 0 0 0 0 C22orf46 79640 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 42089695 42089695 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001142964 exon2 c.C445T p.P149S TCTGAGCCCATCT . 68 14 69 0 . 0 0 0 0 0 MEI1 150365 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 42114182 42114182 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MEI1-70 NM_152513 exon6 c.G637T p.E213X GCAGCTGAGATGC . 94 16 86 0 . 0 0 0 0 0 MEI1 150365 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 42114184 42114184 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MEI1-70 NM_152513 exon6 c.G639A p.E213E AGCTGAGATGCTT . 96 17 86 0 . 0 0 0 0 0 NFAM1 150372 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 42781209 42781209 + Missense_Mutation SNP G G T rs200124807 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NFAM1-90 NM_145912 exon6 c.C771A p.F257L ATCTTCGAATCTA . 63 32 76 0 G|1.000;A|0.000 0 0 0 0 0 SCUBE1 80274 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 43610215 43610215 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SCUBE1-93 NM_173050 exon16 c.A1934T p.Q645L ACACACTGGCCGA . 211 94 194 0 . 0 0 0 0 0 EFCAB6 64800 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 22 44151684 44151684 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EFCAB6-97 NM_022785 exon6 c.C469T p.R157C ATGTGCGGCAGCA . 33 17 48 0 . 0 0 0 0 0 EFCAB6 64800 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 44161245 44161245 + Missense_Mutation SNP G G A rs139001785 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EFCAB6-97 NM_022785 exon5 c.C380T p.P127L AGGTACGGTACAG . 189 73 203 0 G|0.999;A|0.000 0 0 0 0 0 EFCAB6 64800 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 44161247 44161247 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EFCAB6-97 NM_022785 exon5 c.A378T p.V126V GTACGGTACAGTA . 189 74 201 1 . 0 0 0 0 0 PARVG 64098 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 44602230 44602230 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PARVG-90 NM_001137606 exon14 c.G920T p.R307M CACTGAGGGTGCT . 278 117 182 0 . 0 0 0 0 0 KIAA0930 23313 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 45598876 45598876 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIAA0930-90 NM_015264 exon7 c.G862A p.E288K CCCGCTCGTGCAT . 96 11 81 0 . 0 0 0 0 0 UPK3A 7380 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 45691536 45691536 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . UPK3A-90 NM_006953 exon6 c.C800A p.T267K CCTACACGTCCGT . 72 25 55 0 . 0 0 0 0 0 RIBC2 26150 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 45822021 45822021 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RIBC2-90 . . . . AGATCCGCCTAGT . 66 31 77 0 . 0 0 0 0 0 GTSE1 51512 broad.mit.edu 37 22 46712004 46712004 + Missense_Mutation SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GTSE1-187 NM_016426 exon7 c.T1127G p.M376R GCAGAATGGGACC . 108 9 114 11 . 0 0 0 0 0 CELSR1 9620 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 46835306 46835306 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CELSR1-525 NM_014246 exon3 c.G4186A p.E1396K AGTGCTCTCCTGG . 84 18 54 0 . 0 0 0 0 0 C22orf34 348645 broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 50018299 50018299 + RNA SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . . . . . CCGTTGGTGGCCT . 62 24 68 1 . 0 0 0 0 0 PLXNB2 23654 broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 50714236 50714236 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLXNB2-211 NM_012401 exon37 c.T5414A p.I1805N TTGATGATCTGAG . 119 51 87 1 . 0 0 0 0 0 ARSA 410 broad.mit.edu;bcgsc.ca 37 22 51065667 51065667 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARSA-92 NM_001085426 exon3 c.G392T p.G131V TCAGGCCCCACCC . 87 43 46 1 . 0 0 0 0 0 ACR 49 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 51183082 51183082 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ACR-90 NM_001097 exon5 c.G713A p.G238E GACAGGGAGACAG . 232 55 186 0 . 0 0 0 0 0 CHL1 10752 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 361487 361487 + Missense_Mutation SNP C C G rs139673243 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CHL1-583 NM_001253388 exon1 c.C28G p.L10V AGAGGACTAATCG . 30 19 43 0 C|1.000;G|0.000 0 0 0 0 0 ITPR1 3708 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 4693830 4693830 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ITPR1-710 NM_001099952 exon11 c.G879T p.R293R ATGTCGGGGCGGA . 163 110 138 0 . 0 0 0 0 0 GRM7 2917 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 6903300 6903300 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GRM7-526 NM_000844 exon1 c.G225T p.G75G AAACGGGATCCAC . 246 165 173 1 . 0 0 0 0 0 SETD5 55209 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 9483874 9483874 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SETD5-70 NM_001080517 exon10 c.G1022T p.R341L ATGCCCGTACTTT . 65 41 68 0 . 0 0 0 0 0 ARPC4 10093 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 9839433 9839433 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARPC4-90 NM_001198780 exon2 c.C151A p.R51R GTGGAACGACACA . 87 56 76 1 . 0 0 0 0 0 WNT7A 7476 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 13896295 13896295 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WNT7A-948 NM_004625 exon3 c.C304A p.R102R CCTCCCGGCTCCC . 62 45 52 0 . 0 0 0 0 0 ZNF385D 79750 broad.mit.edu;bcgsc.ca 37 3 21462870 21462870 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF385D-156 NM_024697 exon8 c.G1024T p.A342S CTGCAGCTGCTAG . 57 38 48 1 . 0 0 0 0 0 ZCWPW2 152098 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 28454817 28454817 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZCWPW2-24 NM_001040432 exon2 c.G258T p.Q86H TCATCAGTGTGGA . 130 98 124 2 . 0 0 0 0 0 TGFBR2 7048 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 30713626 30713626 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TGFBR2-1698 NM_001024847 exon5 c.G1026T p.L342F GGAGTTGGGGAAA . 113 74 160 1 . 0 0 0 0 0 SCN11A 11280 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 38936044 38936044 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SCN11A-99 NM_014139 exon15 c.C2815A p.Q939K CAGGTTGTGTGAT . 100 55 119 1 . 0 0 0 0 0 SCN11A 11280 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 38991675 38991675 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SCN11A-99 NM_014139 exon1 c.G179A p.R60K AACTTCCTGGAGG . 111 70 129 2 . 0 0 0 0 0 TTC21A 199223 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 39151570 39151570 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTC21A-91 NM_001105513 exon3 c.G208T p.D70Y CACCCAGACGTGT . 67 37 118 0 . 0 0 0 0 0 CX3CR1 1524 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 39307473 39307473 + Silent SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CX3CR1-658 NM_001171174 exon2 c.T624A p.L208L GTCACCAAGGCAT . 94 49 141 0 . 0 0 0 0 0 CX3CR1 1524 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 39307475 39307475 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CX3CR1-658 NM_001171174 exon2 c.C622A p.L208I CACCAAGGCATTC . 91 47 140 0 . 0 0 0 0 0 CCDC13 152206 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 42787495 42787495 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CCDC13-91 NM_144719 exon7 c.G745A p.D249N TGATGTCTTCCCC . 100 44 149 0 . 0 0 0 0 0 EXOSC7 23016 bcgsc.ca 37 3 45052775 45052775 + Missense_Mutation SNP G G C rs6794 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EXOSC7-90 NM_015004 exon8 c.G820C p.V274L AGTGTTGTGCACA . 123 6 175 1 G|0.396;C|0.604 0 0 0 0 0 CSPG5 10675 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 47618883 47618883 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CSPG5-91 NM_006574 exon2 c.C633G p.D211E GAAGTAGTCGATG . 55 29 78 1 . 0 0 0 0 0 COL7A1 1294 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 48607044 48607044 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COL7A1-160 NM_000094 exon101 c.G7595C p.R2532P GCACCCCGTGGGC . 75 44 86 0 . 0 0 0 0 0 AMIGO3 386724 broad.mit.edu 37 3 49755684 49755684 + Silent SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AMIGO3-91 NM_198722 exon1 c.A1215C p.P405P GCAGGGTGGGGCG . 102 21 38 1 . 0 0 0 0 0 DNAH1 25981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 52402787 52402787 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DNAH1-67 NM_015512 exon37 c.G5796T p.R1932R CATCCGGGCGGGG . 144 78 184 0 . 0 0 0 0 0 DNAH12 201625 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 57458294 57458294 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DNAH12-47 NM_178504 exon14 c.C1755A p.P585P AAAGATGGGATTA . 207 118 249 0 . 0 0 0 0 0 CADPS 8618 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 62535700 62535700 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CADPS-281 NM_003716 exon11 c.G1844T p.W615L TGGACCCACAGGA . 166 90 175 0 . 0 0 0 0 0 LRIG1 26018 hgsc.bcm.edu 37 3 66550756 66550756 + Missense_Mutation SNP G G C rs1403625 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRIG1-230 NM_015541 exon1 c.C76G p.L26V GCCGAAGCAAAAG . 5 5 0 0 G|0.237;C|0.763 0 0 0 0 0 LRIG1 26018 hgsc.bcm.edu 37 3 66550762 66550762 + Missense_Mutation SNP G G C rs1403626 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRIG1-230 NM_015541 exon1 c.C70G p.L24V GCAAAAGCAGCCA . 5 5 0 0 G|0.252;C|0.748 0 0 0 0 0 ROBO2 6092 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 77607213 77607213 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ROBO2-328 NM_002942 exon9 c.C1350A p.S450R AATTAGCTGGTTA . 130 70 173 0 . 0 0 0 0 0 ROBO1 6091 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 78795964 78795964 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ROBO1-67 NM_002941 exon5 c.G586T p.G196C GATGGCCTCGTGG . 79 44 97 0 . 0 0 0 0 0 POU1F1 5449 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 87322579 87322579 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . POU1F1-226 NM_001122757 exon2 c.G210T p.L70F GTTTCCCAACGTT . 79 46 156 0 . 0 0 0 0 0 PROS1 5627 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 93617357 93617357 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PROS1-153 NM_000313 exon8 c.G784T p.G262C TGTAACCTCCAGG . 175 35 171 0 . 0 0 0 0 0 EPHA6 285220 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 97466266 97466266 + Splice_Site SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EPHA6-1561 NM_001080448 exon17 c.3129-1G>T . CTTACAGAATGCC . 47 15 61 1 . 0 0 0 0 0 OR5AC2 81050 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 97806110 97806110 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR5AC2-69 NM_054106 exon1 c.G94T p.V32L TTTGTTGTGTTTT . 169 38 160 2 . 0 0 0 0 0 OR5H2 79310 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 98002120 98002120 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR5H2-71 NM_001005482 exon1 c.C389A p.A130D ATGTAGCCATATG . 147 54 122 1 . 0 0 0 0 0 IMPG2 50939 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 100948383 100948383 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IMPG2-93 NM_016247 exon17 c.G3474C p.K1158N GTTGTACTTCACA . 93 54 74 0 . 0 0 0 0 0 MORC1 27136 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 108812300 108812300 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MORC1-98 NM_014429 exon8 c.G672T p.M224I TCCAGCCATCAGT . 79 12 79 0 . 0 0 0 0 0 SLC9C1 285335 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 111898522 111898522 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_183061 exon23 c.G2775A p.G925G ATCAATCCCTAAA . 20 11 23 0 . 0 0 0 0 0 BOC 91653 broad.mit.edu;bcgsc.ca 37 3 112992151 112992151 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BOC-157 NM_033254 exon8 c.C1197A p.S399R TGGGAGCGCCCAT . 124 76 67 2 . 0 0 0 0 0 SIDT1 54847 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 113304098 113304098 + Missense_Mutation SNP G G T rs199757460 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SIDT1-95 NM_017699 exon9 c.G982T p.G328W CTTGTTGGGTTTG . 101 54 107 0 G|1.000;A|0.000 0 0 0 0 0 IGSF11 152404 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 118621406 118621406 + Silent SNP G G T rs148424020 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IGSF11-90 NM_001015887 exon7 c.C1257A p.V419V TACCATGACAGGT . 151 15 164 0 G|1.000;A|0.000 0 0 0 0 0 LRRC58 116064 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 120053716 120053716 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001099678 exon3 c.G900T p.K300N TCCACACTTTGGG . 93 12 92 0 . 0 0 0 0 0 HGD 3081 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 120347254 120347254 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HGD-68 NM_000187 exon14 c.C1311A p.N437K CCTGGAGTTGGGA . 120 20 118 0 . 0 0 0 0 0 FBXO40 51725 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 121340603 121340603 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FBXO40-273 NM_016298 exon3 c.C327T p.T109T TGAAACCACCCTT . 95 50 72 0 . 0 0 0 0 0 SEMA5B 54437 hgsc.bcm.edu 37 3 122631896 122631896 + Missense_Mutation SNP A A T rs2276782 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SEMA5B-157 NM_001256347 exon18 c.T2681A p.V894D AGGAGGACCTCCA . 25 18 1 0 T|0.412;A|0.588 0 0 0 0 0 SEMA5B 54437 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 122680055 122680055 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SEMA5B-157 NM_001256347 exon2 c.C218A p.P73H GTATCAGGCGGCC . 297 159 248 1 . 0 0 0 0 0 KALRN 8997 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 124017695 124017695 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KALRN-738 NM_003947 exon6 c.G1021C p.G341R GAGATCGGAGTCA . 214 107 178 0 . 0 0 0 0 0 ALDH1L1 10840 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 125869263 125869263 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ALDH1L1-156 NM_001270364 exon8 c.G1000T p.A334S CCTCCGCAGTAAC . 291 73 261 0 . 0 0 0 0 0 UROC1 131669 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 126224620 126224620 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . UROC1-91 NM_001165974 exon8 c.C737G p.T246S CCAGAGGTGACAA . 226 50 159 0 . 0 0 0 0 0 PODXL2 50512 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 127387303 127387303 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PODXL2-91 NM_015720 exon5 c.G1226T p.R409L AGCACCGGGGGCC . 270 143 196 1 . 0 0 0 0 0 IFT122 55764 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 129239080 129239080 + Missense_Mutation SNP G G T rs201755623 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IFT122-92 NM_052985 exon31 c.G3851T p.R1284L ACTGCCGCAGGTG . 106 64 65 1 G|0.999;A|0.001 0 0 0 0 0 TMCC1 23023 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 129373858 129373858 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMCC1-91 NM_001017395 exon5 c.G1600T p.E534X TTTCTTCCATGCT . 105 21 82 0 . 0 0 0 0 0 PRR23A 729627 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 138724701 138724701 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001134659 exon1 c.T410A p.V137D TGCTCAACGACGA . 303 153 195 0 . 0 0 0 0 0 PRR23C 389152 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 138762923 138762923 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRR23C-23 NM_001134657 exon1 c.C540G p.P180P AGCGGAGGGGTAG . 198 115 144 1 . 0 0 0 0 0 CLSTN2 64084 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 140167391 140167391 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CLSTN2-157 NM_022131 exon6 c.G818T p.G273V AGCCTGGCTCCGG . 196 37 221 0 . 0 0 0 0 0 CLSTN2 64084 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 140265408 140265408 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CLSTN2-157 NM_022131 exon10 c.C1559A p.A520D GCCTGGCCAGTCT . 300 172 240 1 . 0 0 0 0 0 SPSB4 92369 hgsc.bcm.edu 37 3 140785132 140785132 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPSB4-226 NM_080862 exon2 c.G186T p.S62S CCGCTCGCTCAAC . 129 26 4 0 . 0 0 0 0 0 GK5 256356 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 141904794 141904794 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GK5-90 NM_001039547 exon9 c.G793T p.V265L TAGGCACACCAAA . 127 12 102 0 . 0 0 0 0 0 ATR 545 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 142232433 142232433 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ATR-1139 NM_001184 exon26 c.G4551C p.M1517I CTTCATCATAATG . 469 88 395 0 . 0 0 0 0 0 TRPC1 7220 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 142523389 142523389 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRPC1-92 NM_001251845 exon12 c.A2071G p.I691V AAGACTATCTGCT . 263 44 247 0 . 0 0 0 0 0 CPA3 1359 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 148586735 148586735 + Missense_Mutation SNP G G T rs138685459 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CPA3-154 NM_001870 exon3 c.G178T p.V60L CACCACGTAGCTG . 105 19 69 0 G|1.000;A|0.000 0 0 0 0 0 CP 1356 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 148923984 148923984 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CP-515 NM_000096 exon6 c.C1179T p.F393F TTTAGTGAAGATG . 92 13 87 1 . 0 0 0 0 0 P2RY12 64805 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 151055969 151055969 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . P2RY12-501 NM_022788 exon3 c.G665C p.R222T CTCGTTCTTACGT . 121 19 124 0 . 0 0 0 0 0 IGSF10 285313 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 151166386 151166386 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IGSF10-102 NM_178822 exon4 c.A1383T p.P461P TGCTCTTGGTAAA . 85 49 59 0 . 0 0 0 0 0 RAP2B 5912 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 152880651 152880651 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RAP2B-847 NM_002886 exon1 c.G169T p.D57Y ATCCTGGATACGG . 341 174 282 0 . 0 0 0 0 0 GPR149 344758 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 154146424 154146424 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR149-96 NM_001038705 exon1 c.G981T p.M327I TTTTACCATCATG . 341 191 221 1 . 0 0 0 0 0 MME 4311 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 154884770 154884770 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MME-516 NM_007287 exon18 c.G1740T p.M580I CGGCATGGTCATA . 116 65 144 0 . 0 0 0 0 0 TIPARP 25976 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 156413771 156413771 + Nonsense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TIPARP-523 NM_015508 exon4 c.A1204T p.R402X AAAAGGAGACCCC . 79 22 78 0 . 0 0 0 0 0 RARRES1 5918 hgsc.bcm.edu 37 3 158449965 158449965 + Silent SNP T T C rs6441223 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RARRES1-514 NM_206963 exon1 c.A240G p.L80L CACTCGTAGCGCG . 4 4 0 0 T|0.584;C|0.416 0 0 0 0 0 OTOL1 131149 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 161214847 161214847 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001080440 exon1 c.C252T p.L84L CACTCTCTCTCCC . 179 17 145 0 . 0 0 0 0 0 SI 6476 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 164786984 164786984 + Splice_Site SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SI-104 NM_001041 exon5 c.256-1G>T . AATTCCCTGATAA . 112 17 112 0 . 0 0 0 0 0 BCHE 590 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 165547305 165547305 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BCHE-94 NM_000055 exon2 c.G1517T p.G506V ACTTACCCATATT . 82 13 93 0 . 0 0 0 0 0 SERPINI2 5276 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 167184843 167184843 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SERPINI2-228 NM_001012303 exon4 c.G508C p.G170R CTTTACCATCTGT . 36 4 28 0 . 0 0 0 0 0 WDR49 151790 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 167218046 167218046 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WDR49-155 NM_178824 exon14 c.C1870T p.P624S CTTCAGGCAGCTC . 50 29 59 0 . 0 0 0 0 0 SAMD7 344658 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 169644583 169644583 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SAMD7-91 NM_182610 exon6 c.G533T p.G178V GCTGGGGGCAGAG . 215 40 143 0 . 0 0 0 0 0 TNIK 23043 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 170928929 170928929 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TNIK-550 NM_001161562 exon4 c.A282T p.P94P GCCTGGTGGGTTC . 60 26 79 0 . 0 0 0 0 0 KCNMB2 10242 hgsc.bcm.edu;bcgsc.ca 37 3 178543454 178543454 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KCNMB2-91 NM_005832 exon4 c.135delC p.D45fs AGAGGACCGAGCT . 196 93 193 1 . 0 0 0 0 0 MFN1 55669 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 179076752 179076752 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MFN1-155 NM_033540 exon4 c.C373T p.L125F GCCTATCTTATGA . 60 33 72 1 . 0 0 0 0 0 NDUFB5 4711 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 179332777 179332777 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NDUFB5-91 NM_002492 exon2 c.G143T p.G48V ACAGTGGAGACCA . 46 11 48 0 . 0 0 0 0 0 CCDC39 339829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 180366051 180366051 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CCDC39-72 NM_181426 exon10 c.G1264A p.E422K CAATTTCTGATAA . 68 13 79 0 . 0 0 0 0 0 CCDC39 339829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 180369189 180369189 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CCDC39-72 NM_181426 exon9 c.G1167A p.K389K CTTTACCTTCACA . 40 17 32 0 . 0 0 0 0 0 SOX2 6657 broad.mit.edu;bcgsc.ca;mdanderson.org 37 3 181430384 181430384 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SOX2-650 NM_003106 exon1 c.G236T p.W79L CCGAGTGGAAACT . 312 38 265 1 . 0 0 0 0 0 MCF2L2 23101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 183013226 183013226 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MCF2L2-293 NM_015078 exon13 c.C1537A p.Q513K TTTCCTGGACATC . 159 29 146 0 . 0 0 0 0 0 ABCC5 10057 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 183679297 183679297 + Splice_Site SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ABCC5-137 NM_005688 exon17 c.2379+2T>A . GATCTTACCTCAA . 107 53 110 0 . 0 0 0 0 0 VWA5B2 90113 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 183952539 183952539 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_138345 exon6 c.G941T p.R314L GGGACCGGCAGGT . 106 60 114 1 . 0 0 0 0 0 CHRD 8646 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 184105719 184105719 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CHRD-93 NM_003741 exon20 c.G2452T p.G818W CTACAGGGGGGCA . 231 30 181 1 . 0 0 0 0 0 SENP2 59343 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 185337191 185337191 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SENP2-658 NM_021627 exon13 c.G1347T p.G449G GTCTGGGGGTTAC . 89 54 82 0 . 0 0 0 0 0 FETUB 26998 hgsc.bcm.edu 37 3 186358823 186358823 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FETUB-92 NM_014375 exon2 c.G230T p.G77V AGGGTGGCCTGGG . 68 4 57 0 . 0 0 0 0 0 HRG 3273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 186389494 186389494 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HRG-91 NM_000412 exon4 c.C474A p.A158A ACAAGCCAACAAA . 263 130 219 1 . 0 0 0 0 0 CCDC50 152137 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 191107354 191107354 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CCDC50-90 NM_178335 exon11 c.C1392T p.S464S GAGTTCCACACGG . 138 52 127 0 . 0 0 0 0 0 OPA1 4976 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 193376763 193376763 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OPA1-68 NM_130837 exon24 c.C2419T p.L807L GAGGCTCTGCAGG . 108 20 89 0 . 0 0 0 0 0 LRRC15 131578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 194080771 194080771 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRRC15-71 NM_001135057 exon3 c.G1020T p.P340P GGCACCCGGGGAG . 183 28 158 0 . 0 0 0 0 0 ACAP2 23527 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 195022705 195022705 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ACAP2-136 NM_012287 exon14 c.G1315T p.G439X GAATTCCGGAGCA . 213 39 180 1 . 0 0 0 0 0 PIGZ 80235 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 196674222 196674222 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PIGZ-93 NM_025163 exon3 c.C1546G p.L516V GGCAGAGCCATGG . 114 56 90 1 . 0 0 0 0 0 KIAA0226 9711 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 197402298 197402298 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIAA0226-22 NM_014687 exon19 c.G2735T p.C912F CCTTCACAGGTCC . 65 31 61 0 . 0 0 0 0 0 KIAA0226 9711 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 197420601 197420601 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIAA0226-22 NM_014687 exon11 c.G1771A p.E591K CAAATTCATCAAC . 86 20 85 0 . 0 0 0 0 0 UVSSA 57654 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 1373968 1373968 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_020894 exon11 c.C1702T p.R568C TGGTGCCGTGCCC . 288 122 177 0 . 0 0 0 0 0 CRIPAK 285464 ucsc.edu;bcgsc.ca;mdanderson.org 37 4 1388416 1388416 + Silent SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CRIPAK-90 NM_175918 exon1 c.A117G p.R39R ATGTCGATGCGGA . 131 38 117 1 . 0 0 0 0 0 OTOP1 133060 broad.mit.edu 37 4 4228274 4228282 + In_Frame_Del DEL CCACAGCAG CCACAGCAG - rs75328065 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OTOP1-92 NM_177998 exon1 c.310_318del p.104_106del CAGCATCCACAGC . 71 13 6 0 . 0 0 0 0 0 MSX1 4487 hgsc.bcm.edu;broad.mit.edu 37 4 4862086 4862086 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MSX1-90 NM_002448 exon1 c.460delC p.P154fs TCCCCGCCGCCGG . 25 15 6 0 . 0 0 0 0 0 MSX1 4487 hgsc.bcm.edu 37 4 4862087 4862088 + Frame_Shift_Del DEL CG CG - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CG CG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MSX1-90 NM_002448 exon1 c.461_462del p.154_154del CCCCGCCGCCGGC . 25 0 6 0 . 0 0 0 0 0 MSX1 4487 hgsc.bcm.edu 37 4 4862088 4862088 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MSX1-90 NM_002448 exon1 c.G462A p.P154P CCCGCCGCCGGCC . 24 14 6 0 . 0 0 0 0 0 EVC 2121 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 5749913 5749913 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EVC-92 NM_153717 exon8 c.C978G p.H326Q CCAGCACTTTCTT . 98 51 103 0 . 0 0 0 0 0 ZNF518B 85460 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 10446969 10446969 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF518B-72 NM_053042 exon3 c.A984T p.P328P TGTCAATGGCATA . 211 44 244 1 . 0 0 0 0 0 BOD1L1 259282 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 13615256 13615256 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_148894 exon5 c.G1204T p.G402X TAAGTCCATCCAC . 98 24 155 0 . 0 0 0 0 0 CC2D2A 57545 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 15512967 15512967 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CC2D2A-25 NM_001080522 exon9 c.G638C p.R213T AAGCAAGACATAG . 112 28 97 0 . 0 0 0 0 0 BST1 683 broad.mit.edu 37 4 15717413 15717413 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BST1-90 NM_004334 exon6 c.G695T p.G232V TTGGGGGACCCAA . 62 21 66 2 . 0 0 0 0 0 CLRN2 645104 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 17524572 17524572 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CLRN2-68 NM_001079827 exon2 c.G339T p.L113L GGCTCTGGTCAGC . 99 26 103 1 . 0 0 0 0 0 DCAF16 54876 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 17805608 17805608 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DCAF16-91 NM_017741 exon3 c.G157T p.A53S GCCAGGCAAGACT . 77 8 101 0 . 0 0 0 0 0 MIR218-1 407000 ucsc.edu;bcgsc.ca 37 4 20529995 20529995 + RNA SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . . . . . CGTCACGCAGCTT . 110 20 114 0 . 0 0 0 0 0 SLIT2 9353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 20530599 20530599 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLIT2-521 NM_004787 exon16 c.G1490T p.S497I AATTAAGTGGAGA . 42 5 61 0 . 0 0 0 0 0 SLIT2 9353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 20543086 20543086 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLIT2-521 NM_004787 exon20 c.G1987C p.A663P CTCTTGGCCAATC . 128 58 142 0 . 0 0 0 0 0 SLIT2 9353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 20550717 20550717 + Missense_Mutation SNP C C G rs143383158 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLIT2-521 NM_004787 exon24 c.C2455G p.R819G CCTCCTCGCACCT . 79 31 56 0 C|1.000;T|0.000 0 0 0 0 0 PACRGL 133015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 20711305 20711305 + Splice_Site SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PACRGL-68 NM_001258345 exon5 c.276-1G>C . ATTTTAGATTGGT . 28 15 46 0 . 0 0 0 0 0 PPARGC1A 10891 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 23815899 23815899 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PPARGC1A-230 NM_013261 exon8 c.G1207C p.E403Q GGAGCTCCTGTGA . 45 19 40 0 . 0 0 0 0 0 STIM2 57620 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 26997095 26997095 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . STIM2-91 NM_001169118 exon4 c.A492T p.K164N TGTCAAAGGAACG . 57 20 71 0 . 0 0 0 0 0 PCDH7 5099 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 30724205 30724205 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDH7-229 NM_032457 exon1 c.C1161A p.A387A CATGGCCCGCGAC . 378 166 226 1 . 0 0 0 0 0 PCDH7 5099 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 30725203 30725203 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDH7-229 NM_032457 exon1 c.C2159A p.P720H GAGATCCTCCCAG . 167 42 200 0 . 0 0 0 0 0 PCDH7 5099 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 30726108 30726108 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDH7-229 NM_032457 exon1 c.C3064A p.Q1022K GCCGTACAAGATC . 122 41 145 0 . 0 0 0 0 0 ARAP2 116984 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 36214095 36214095 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARAP2-93 NM_015230 exon5 c.G1056T p.K352N TTCATTCTTTATA . 28 9 51 0 . 0 0 0 0 0 CHRNA9 55584 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 40337897 40337897 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CHRNA9-96 NM_017581 exon2 c.G118C p.E40Q CTTTTTGAAGATT . 162 41 167 0 . 0 0 0 0 0 DCAF4L1 285429 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 41984385 41984385 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DCAF4L1-23 NM_001029955 exon1 c.C576G p.L192L GTCCCTCAACACC . 209 19 270 0 . 0 0 0 0 0 GRXCR1 389207 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 42895306 42895306 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GRXCR1-23 NM_001080476 exon1 c.C23A p.P8Q TGAAGCCAGAAAG . 242 43 254 0 . 0 0 0 0 0 KCTD8 386617 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 44177094 44177094 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KCTD8-92 NM_198353 exon2 c.G1135T p.A379S CTGTTGCCTGCTG . 108 32 121 0 . 0 0 0 0 0 GABRG1 2565 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 46060307 46060307 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GABRG1-92 NM_173536 exon7 c.C843A p.C281X CAGAATGCATGGA . 177 60 189 0 . 0 0 0 0 0 SGCB 6443 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 52895076 52895076 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SGCB-90 NM_000232 exon4 c.G441T p.Q147H CCCTTGCTGAAAA . 45 15 42 0 . 0 0 0 0 0 SPATA18 132671 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 52944930 52944930 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPATA18-72 NM_145263 exon8 c.C1050A p.F350L GGCATTCAGACAC . 105 27 101 0 . 0 0 0 0 0 TMEM165 55858 hgsc.bcm.edu 37 4 56262374 56262374 + Silent SNP A A G rs1128141 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMEM165-514 NM_018475 exon1 c.A18G p.P6P GGCTCCAGGGAAC . 6 6 0 0 T|0.293;G|0.003 0 0 0 0 0 NMU 10874 hgsc.bcm.edu 37 4 56502304 56502304 + Missense_Mutation SNP G G T rs35771241 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NMU-650 NM_006681 exon1 c.C56A p.A19E GGGGACGCCGCGG . 24 18 0 0 G|0.970;T|0.030 0 0 0 0 0 EXOC1 55763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 56763013 56763013 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EXOC1-950 NM_018261 exon16 c.G2084T p.R695L AGCGTCGTGGAGA . 79 29 101 0 . 0 0 0 0 0 POLR2B 5431 hgsc.bcm.edu;bcgsc.ca 37 4 57889607 57889609 + In_Frame_Del DEL ATG ATG - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 ATG ATG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . POLR2B-92 NM_000938 exon19 c.2627_2629del p.876_877del CTGAAAATGAAGA . 146 63 155 0 . 0 0 0 0 0 LPHN3 23284 ucsc.edu;bcgsc.ca 37 4 62910175 62910175 + Missense_Mutation SNP G G T rs143689172 by1000genomes;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LPHN3-508 NM_015236 exon22 c.G3518T p.R1173L AGAGCCGAATCCG . 332 130 451 3 G|0.999;A|0.000 0 0 0 0 0 TECRL 253017 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 65180421 65180421 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TECRL-90 NM_001010874 exon5 c.C496A p.P166T TACATGGGATCCT . 302 124 365 1 . 0 0 0 0 0 EPHA5 2044 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 66201818 66201818 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EPHA5-1430 NM_004439 exon16 c.A2684G p.Y895C AGACGATAGCCTT . 105 42 133 1 . 0 0 0 0 0 EPHA5 2044 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 66467370 66467370 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EPHA5-1430 NM_004439 exon3 c.G899T p.G300V CAGGTGCCATTTT . 67 30 60 0 . 0 0 0 0 0 UBA6 55236 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 68492095 68492095 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . UBA6-90 NM_018227 exon28 c.C2501T p.S834F TCATTAGATAAAA . 29 6 32 0 . 0 0 0 0 0 TMPRSS11E 28983 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 69343119 69343119 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMPRSS11E-70 NM_014058 exon8 c.T740A p.F247Y CTTCCTTTGGAGT . 199 80 193 0 . 0 0 0 0 0 UGT2A3 79799 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 69795545 69795545 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . UGT2A3-92 NM_024743 exon6 c.G1570C p.E524Q TCTTTTCTATCTT . 57 25 87 0 . 0 0 0 0 0 HTN1 3346 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 70920167 70920167 + Silent SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HTN1-91 NM_002159 exon4 c.T102C p.H34H ATTCCATGTAAGT . 108 18 142 0 . 0 0 0 0 0 MUC7 4589 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 71346966 71346966 + Missense_Mutation SNP C C A rs41413151 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MUC7-93 NM_001145007 exon4 c.C505A p.P169T GCTGCCCCACCCA . 254 126 276 1 C|0.987;A|0.013 0 0 0 0 0 GC 2638 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 72622606 72622606 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GC-93 NM_001204307 exon9 c.G914A p.C305Y TTGTCACAGAGTT . 34 16 40 0 . 0 0 0 0 0 CCDC158 339965 hgsc.bcm.edu;bcgsc.ca 37 4 77244563 77244563 + Splice_Site SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CCDC158-96 NM_001042784 exon24 c.3158-1G>T . GTGAATCTATTAG . 40 9 47 0 . 0 0 0 0 0 SOWAHB 345079 hgsc.bcm.edu 37 4 77818202 77818202 + Silent SNP T T C rs2645674 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001029870 exon1 c.A801G p.T267T CCTGCTTGTCGCA . 16 6 1 0 T|0.691;C|0.309 0 0 0 0 0 CNOT6L 246175 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 78641630 78641630 + Silent SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CNOT6L-67 NM_144571 exon12 c.A1623G p.P541P CAGGAGTGGAGGG . 754 181 816 1 . 0 0 0 0 0 FGF5 2250 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 81207738 81207738 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FGF5-1135 NM_004464 exon3 c.C719A p.P240H AGCCACCTAGCCC . 102 20 106 0 . 0 0 0 0 0 PRKG2 5593 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 82090866 82090866 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRKG2-524 NM_006259 exon4 c.A799T p.R267W TCCTCCTCATTAT . 52 12 43 0 . 0 0 0 0 0 PRKG2 5593 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 82125944 82125944 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRKG2-524 NM_006259 exon1 c.G258T p.V86V CATATGCACCACA . 137 55 143 0 . 0 0 0 0 0 SEC31A 22872 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 83785613 83785613 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SEC31A-268 NM_001077206 exon11 c.C1336T p.Q446X CCTGCTGAAGTTG . 121 59 109 2 . 0 0 0 0 0 WDFY3 23001 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 85626662 85626662 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WDFY3-93 NM_014991 exon54 c.G8220T p.E2740D ATCCACCTCCTAA . 103 40 108 0 . 0 0 0 0 0 SLC10A6 345274 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 87744863 87744863 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC10A6-22 NM_197965 exon6 c.G1112T p.G371V ATGTGGCCAACTG . 124 27 132 1 . 0 0 0 0 0 SLC10A6 345274 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 87769948 87769948 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC10A6-22 NM_197965 exon1 c.G321T p.P107P GCCCCCCGGGCAG . 176 82 145 0 . 0 0 0 0 0 HERC3 8916 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 89607931 89607931 + Missense_Mutation SNP A A C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HERC3-660 NM_014606 exon22 c.A2552C p.E851A TGGAGGAGACTTT . 112 34 115 0 . 0 0 0 0 0 MMRN1 22915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 90857026 90857026 + Missense_Mutation SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MMRN1-94 NM_007351 exon6 c.T2195G p.M732R AGACAATGACTAT . 130 35 184 0 . 0 0 0 0 0 MMRN1 22915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 90857213 90857213 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MMRN1-94 NM_007351 exon6 c.G2382T p.Q794H CAATCAGAGATAT . 50 18 69 0 . 0 0 0 0 0 ATOH1 474 hgsc.bcm.edu;bcgsc.ca 37 4 94750174 94750174 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ATOH1-90 NM_005172 exon1 c.97delC p.P33fs CCGCCGCCGCCGC . 427 110 300 1 . 0 0 0 0 0 PDLIM5 10611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 95497186 95497186 + Splice_Site SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PDLIM5-117 NM_006457 exon5 c.710+1G>T . AAATGGGTAGGTG . 172 59 179 0 . 0 0 0 0 0 BMPR1B 658 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 96075737 96075737 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BMPR1B-1378 NM_001256793 exon11 c.G1512T p.W504C ATGCTGGGCTCAC . 168 44 140 0 . 0 0 0 0 0 ADH1B 125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 100235236 100235236 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADH1B-136 NM_000668 exon6 c.C570T p.V190V TGGGGTGACCTGT . 155 72 186 0 . 0 0 0 0 0 ADH1B 125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 100237112 100237112 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADH1B-136 NM_000668 exon5 c.C510A p.V170V GAGGCAGACTTTC . 262 72 276 0 . 0 0 0 0 0 NFKB1 4790 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 103537720 103537720 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NFKB1-912 NM_003998 exon24 c.G2879T p.G960V ATTATGGGCAGGA . 86 52 97 0 . 0 0 0 0 0 MANBA 4126 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 103557078 103557078 + Missense_Mutation SNP T T C rs113843904 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MANBA-91 NM_005908 exon15 c.A2101G p.T701A AGAACGTGTTTTC . 135 28 159 0 T|0.500;C|0.500 0 0 0 0 0 CENPE 1062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 104032111 104032111 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CENPE-277 NM_001813 exon47 c.G7598T p.G2533V CCGCTGCCACCTC . 49 24 69 0 . 0 0 0 0 0 CENPE 1062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 104066245 104066245 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CENPE-277 NM_001813 exon32 c.G4819T p.D1607Y GTTGGTCTCTCTC . 33 13 37 0 . 0 0 0 0 0 CENPE 1062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 104080288 104080288 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CENPE-277 NM_001813 exon22 c.T2480A p.M827K AAGTCCATATGAA . 61 30 95 0 . 0 0 0 0 0 CENPE 1062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 104102532 104102532 + Nonsense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CENPE-277 NM_001813 exon12 c.A1045T p.R349X CTTTTCTATACCT . 193 58 214 0 . 0 0 0 0 0 GSTCD 79807 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 106640417 106640417 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GSTCD-92 NM_001031720 exon3 c.G627T p.G209G AGTTGGGCCTCCC . 94 38 114 2 . 0 0 0 0 0 DKK2 27123 ucsc.edu;bcgsc.ca 37 4 107845222 107845222 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DKK2-661 NM_014421 exon4 c.T669A p.H223Q CAGCCCATGAGAA . 250 54 323 2 . 0 0 0 0 0 DKK2 27123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 107956686 107956686 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DKK2-661 NM_014421 exon1 c.G63T p.L21L CACCATCAGCACC . 121 47 140 0 . 0 0 0 0 0 PITX2 5308 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 111539439 111539439 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PITX2-650 NM_000325 exon3 c.C817G p.P273A TCGGCGGCGCGTA . 257 151 217 0 . 0 0 0 0 0 C4orf32 132720 hgsc.bcm.edu 37 4 113066831 113066831 + Missense_Mutation SNP G G A rs10002700 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C4orf32-90 NM_152400 exon1 c.G95A p.G32E GGACCGGGTGGGA . 5 5 0 0 G|0.022;A|0.978 0 0 0 0 0 ANK2 287 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 114199709 114199709 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ANK2-583 NM_001148 exon17 c.G1876T p.A626S GCCACTGCCAAGG . 187 116 118 1 . 0 0 0 0 0 ANK2 287 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 114279073 114279073 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ANK2-583 NM_001148 exon38 c.C9299G p.P3100R AAAACCCATTTCT . 110 73 86 0 . 0 0 0 0 0 ANK2 287 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 114294594 114294594 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ANK2-583 NM_001148 exon45 c.G11848A p.E3950K GACACCGAGCAGT . 427 250 308 0 . 0 0 0 0 0 UGT8 7368 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 115544819 115544819 + Silent SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . UGT8-92 NM_003360 exon1 c.A783T p.V261V TTATGTAGGAGGA . 163 91 126 0 . 0 0 0 0 0 NDST4 64579 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 115773935 115773935 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NDST4-94 NM_022569 exon8 c.G1762T p.E588X TTTTCTCTCTGGA . 112 69 108 0 . 0 0 0 0 0 SYNPO2 171024 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 119978893 119978893 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SYNPO2-92 NM_133477 exon5 c.A3590T p.Q1197L GAAGGCAAGAGTA . 490 66 328 0 . 0 0 0 0 0 ANXA5 308 bcgsc.ca 37 4 122593694 122593694 + Nonsense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ANXA5-91 NM_001154 exon9 c.A619T p.R207X CCTTTCTCAAATG . 59 37 34 1 . 0 0 0 0 0 TRPC3 7222 ucsc.edu;bcgsc.ca 37 4 122853706 122853706 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRPC3-92 NM_001130698 exon2 c.C707T p.P236L ATGATGGGGGTGA . 350 225 222 3 . 0 0 0 0 0 TRPC3 7222 bcgsc.ca 37 4 122853981 122853981 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRPC3-92 NM_001130698 exon2 c.C432A p.D144E CATGTAGTCCACG . 469 307 203 4 . 0 0 0 0 0 KIAA1109 84162 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 123227129 123227129 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIAA1109-80 NM_015312 exon55 c.C9770A p.S3257X GTTCTTCAGATAG . 99 61 92 1 . 0 0 0 0 0 ANKRD50 57182 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 125591276 125591276 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ANKRD50-90 NM_020337 exon4 c.A3156T p.A1052A CTGGGCTGCAATA . 498 320 348 0 . 0 0 0 0 0 ANKRD50 57182 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 125592669 125592669 + Missense_Mutation SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ANKRD50-90 NM_020337 exon4 c.A1763C p.Q588P TGTCCCTGTCTAG . 152 13 105 0 . 0 0 0 0 0 FAT4 79633 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 126370695 126370695 + Nonsense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAT4-108 NM_024582 exon9 c.A8524T p.R2842X CGTTACAGAATTC . 124 18 92 0 . 0 0 0 0 0 FAT4 79633 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 126372220 126372220 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAT4-108 NM_024582 exon9 c.A10049T p.K3350M TCAATAAGAAGAC . 141 84 107 0 . 0 0 0 0 0 SCLT1 132320 broad.mit.edu;ucsc.edu 37 4 129964623 129964623 + Splice_Site SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SCLT1-525 NM_144643 exon5 c.162-1G>T . AAAAAGCTAAAAA . 61 11 124 2 . 0 0 0 0 0 PCDH10 57575 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 134071578 134071578 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDH10-92 NM_032961 exon1 c.C283A p.L95M CTGCACCTGGAGG . 65 16 140 0 . 0 0 0 0 0 PCDH10 57575 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 134071922 134071922 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDH10-92 NM_032961 exon1 c.G627A p.G209G AGGTGGGGGAGGA . 77 27 70 0 . 0 0 0 0 0 PCDH10 57575 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 134073851 134073851 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDH10-92 NM_032961 exon1 c.C2556A p.P852P CAACCCCTGCGGG . 160 60 256 0 . 0 0 0 0 0 PCDH18 54510 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 138451929 138451929 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDH18-185 NM_019035 exon1 c.G1314T p.E438D CCTGTCCTCAGCG . 29 5 65 0 . 0 0 0 0 0 ZNF330 27309 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 142155000 142155000 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF330-90 NM_014487 exon10 c.G820T p.E274X GAGGATGAGTATG . 176 42 243 1 . 0 0 0 0 0 GAB1 2549 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 144359748 144359748 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GAB1-1146 NM_207123 exon4 c.G1190C p.R397P AATTGCGAAAAGG . 44 11 71 0 . 0 0 0 0 0 MMAA 166785 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 146563573 146563573 + Missense_Mutation SNP G G T rs186933110 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MMAA-91 NM_172250 exon3 c.G498T p.M166I AAAAATGCTTACT . 71 13 102 0 G|0.999;A|0.000 0 0 0 0 0 ARHGAP10 79658 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 148968042 148968042 + Splice_Site SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARHGAP10-229 NM_024605 exon20 c.1868-1G>T . CTCCTAGGTGACA . 25 9 40 0 . 0 0 0 0 0 SFRP2 6423 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 154709637 154709637 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SFRP2-659 NM_003013 exon1 c.C351A p.L117L CACGCAGAGCGAG . 200 48 256 0 . 0 0 0 0 0 DCHS2 54798 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 155156608 155156608 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DCHS2-94 NM_017639 exon25 c.G7831A p.D2611N TGGCATCCACAGG . 64 20 129 0 . 0 0 0 0 0 DCHS2 54798 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 155241704 155241704 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DCHS2-94 NM_017639 exon14 c.A3482T p.H1161L GGGTTGTGGTCAT . 190 60 279 0 . 0 0 0 0 0 DCHS2 54798 ucsc.edu;bcgsc.ca 37 4 155411953 155411953 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DCHS2-94 NM_001142552 exon1 c.C555A p.A185A GCGGAAGGCGGTC . 414 114 247 2 . 0 0 0 0 0 GRIA2 2891 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 158224710 158224710 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GRIA2-515 NM_000826 exon3 c.C236A p.S79Y TCTGCTCCCAGTT . 49 8 68 0 . 0 0 0 0 0 FAM198B 51313 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 4 159092012 159092012 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM198B-90 NM_016613 exon2 c.G516C p.L172L CTTAACCAGGTTT . 91 24 134 0 . 0 0 0 0 0 TMEM144 55314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 159162724 159162724 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMEM144-90 NM_018342 exon11 c.T866A p.L289Q ACTCTCTGAGTGC . 35 10 55 0 . 0 0 0 0 0 RXFP1 59350 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 159573178 159573178 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RXFP1-91 NM_001253727 exon18 c.C2326A p.Q776K ATTTCTCAATCAA . 46 9 67 0 . 0 0 0 0 0 NPY1R 4886 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 164247178 164247178 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NPY1R-523 NM_000909 exon2 c.C529A p.Q177K TTACTTGGTAGAT . 124 26 199 0 . 0 0 0 0 0 TKTL2 84076 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 164393463 164393463 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TKTL2-95 NM_032136 exon1 c.G1424T p.R475L CTGGTTCGAATGA . 86 25 130 0 . 0 0 0 0 0 TLL1 7092 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 166960572 166960572 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TLL1-158 NM_012464 exon10 c.T1240A p.W414R GGGTACTGGAGAA . 63 13 100 0 . 0 0 0 0 0 TLL1 7092 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 167020586 167020586 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TLL1-158 NM_012464 exon20 c.G2814T p.V938V TGAAGTGGAGGAA . 172 55 290 0 . 0 0 0 0 0 DDX60L 91351 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 169383010 169383010 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DDX60L-69 NM_001012967 exon5 c.G446T p.G149V CTCAGGCCTTCCT . 87 23 86 0 . 0 0 0 0 0 NEK1 4750 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 170506532 170506532 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NEK1-361 NM_001199399 exon10 c.G775T p.A259S GTTTGGCTATAAA . 90 17 126 0 . 0 0 0 0 0 GALNTL6 442117 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 173734869 173734869 + Silent SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GALNTL6-137 NM_001034845 exon7 c.T918C p.P306P CGACCCTTTTGAG . 73 23 84 0 . 0 0 0 0 0 WDR17 116966 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 177098263 177098263 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WDR17-95 NM_170710 exon29 c.T3621A p.S1207S TCTTTCTGAGGAA . 49 14 58 0 . 0 0 0 0 0 TENM3 55714 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 183659684 183659684 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001080477 exon17 c.G3366T p.L1122L CGTGCTGGATGTA . 158 35 159 1 . 0 0 0 0 0 MTNR1A 4543 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 187455197 187455197 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MTNR1A-524 NM_005958 exon2 c.C699A p.D233E CCTGAAGTCCTGT . 219 62 230 0 . 0 0 0 0 0 MTNR1A 4543 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 187455239 187455239 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MTNR1A-524 NM_005958 exon2 c.G657T p.Q219H CACCCTCTGTCTG . 236 73 253 0 . 0 0 0 0 0 FAT1 2195 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 187541066 187541066 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAT1-34 NM_005245 exon10 c.G6674T p.S2225I AACTGGCTGAAAG . 128 35 173 2 . 0 0 0 0 0 TRIML1 339976 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 189068073 189068073 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRIML1-156 NM_178556 exon6 c.C954A p.P318P GCTACCCGACAAC . 179 57 197 0 . 0 0 0 0 0 IRX4 50805 ucsc.edu;bcgsc.ca 37 5 1879752 1879752 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IRX4-226 NM_016358 exon4 c.A602G p.K201R TCCTTCTTGAGGC . 285 94 156 3 . 0 0 0 0 0 KIAA0947 23379 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 5457693 5457693 + Missense_Mutation SNP G G T rs76783275 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIAA0947-48 NM_015325 exon12 c.G940T p.G314C CGTGACGGTGGTA . 185 61 193 0 G|0.986;A|0.014 0 0 0 0 0 KIAA0947 23379 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 5460966 5460966 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIAA0947-48 NM_015325 exon13 c.G1519T p.G507C ACTCGAGGTCTAT . 216 78 211 0 . 0 0 0 0 0 KIAA0947 23379 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 5462358 5462358 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIAA0947-48 NM_015325 exon13 c.A2911T p.I971F CAAGACATTGTGA . 86 32 81 0 . 0 0 0 0 0 KIAA0947 23379 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 5466585 5466585 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIAA0947-48 NM_015325 exon14 c.C6031G p.R2011G AGAGCTCGTTTGT . 105 13 125 0 . 0 0 0 0 0 SEMA5A 9037 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 9154783 9154783 + Missense_Mutation SNP C C A rs138343991 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SEMA5A-91 NM_003966 exon12 c.G1298T p.R433L GGTACCCGCACTT . 377 106 272 0 C|0.999;T|0.000 0 0 0 0 0 SEMA5A 9037 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 9202086 9202086 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SEMA5A-91 NM_003966 exon9 c.G913T p.G305C AGATGCCATAGAT . 269 87 259 1 . 0 0 0 0 0 CTNND2 1501 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 11364815 11364815 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CTNND2-293 NM_001332 exon8 c.G1365C p.T455T TGTGCTCGTGCGG . 61 30 73 0 . 0 0 0 0 0 CTNND2 1501 broad.mit.edu;bcgsc.ca 37 5 11397217 11397217 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CTNND2-293 NM_001332 exon6 c.C538T p.L180L CCCCCAGGGCCAG . 106 35 91 2 . 0 0 0 0 0 DNAH5 1767 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 13753344 13753344 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DNAH5-182 NM_001369 exon63 c.C10870T p.Q3624X TTACCTGGAGTTC . 67 19 59 0 . 0 0 0 0 0 DNAH5 1767 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 13841987 13841987 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DNAH5-182 NM_001369 exon33 c.C5298G p.S1766S TTGAGAGGAAATT . 62 24 67 0 . 0 0 0 0 0 FBXL7 23194 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 15928111 15928111 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FBXL7-228 NM_012304 exon3 c.C240A p.I80I CTCCATCACCGGG . 115 40 87 0 . 0 0 0 0 0 FBXL7 23194 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 15928344 15928344 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FBXL7-228 NM_012304 exon3 c.G473T p.R158L CTATCCGCCTGAC . 148 50 75 0 . 0 0 0 0 0 FBXL7 23194 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 15928373 15928373 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FBXL7-228 NM_012304 exon3 c.C502T p.R168C GTGGACCGCGCCC . 195 70 120 1 . 0 0 0 0 0 CDH18 1016 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 19473645 19473645 + Missense_Mutation SNP C C A rs140353037 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CDH18-159 NM_004934 exon13 c.G2063T p.R688L TCCCTCCGGTACT . 157 59 176 0 C|1.000;T|0.000 0 0 0 0 0 CDH12 1010 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 21755941 21755941 + Silent SNP C C G rs201811162 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CDH12-92 NM_004061 exon14 c.G1644C p.A548A AATCCCCGCTGTG . 140 42 170 1 C|0.999;T|0.001 0 0 0 0 0 CDH12 1010 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 21783535 21783535 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CDH12-92 NM_004061 exon11 c.C1325A p.A442D TTAGTGGCGATGG . 95 32 88 0 . 0 0 0 0 0 CDH12 1010 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 21854885 21854885 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CDH12-92 NM_004061 exon7 c.C541T p.Q181X TGACCTGGAGTAC . 172 58 173 0 . 0 0 0 0 0 PRDM9 56979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 23524575 23524575 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRDM9-139 NM_020227 exon10 c.C1083A p.Y361X TGAATACGGCCAG . 255 92 225 0 . 0 0 0 0 0 PRDM9 56979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 23526532 23526532 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRDM9-139 NM_020227 exon11 c.C1335A p.H445Q TCCACACAGCCGT . 113 35 101 0 . 0 0 0 0 0 PRDM9 56979 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 23527437 23527437 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRDM9-139 NM_020227 exon11 c.C2240A p.P747H AGAAGCCCTATGT . 402 128 396 0 . 0 0 0 0 0 ADAMTS12 81792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 33576158 33576158 + Splice_Site SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADAMTS12-232 NM_030955 exon20 c.3972+1G>T . GTCTTACCTCGCT . 95 36 88 0 . 0 0 0 0 0 ADAMTS12 81792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 33576501 33576501 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADAMTS12-232 NM_030955 exon19 c.G3630A p.W1210X GGGTGGCCACCAG . 210 81 164 0 . 0 0 0 0 0 ADAMTS12 81792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 33658359 33658359 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADAMTS12-232 NM_030955 exon7 c.C1120A p.R374S AACTGCGGTGAGG . 224 80 194 0 . 0 0 0 0 0 ADAMTS12 81792 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 33751563 33751563 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADAMTS12-232 NM_030955 exon3 c.G580T p.V194F TGTAAACGATGTG . 223 80 235 1 . 0 0 0 0 0 RXFP3 51289 hgsc.bcm.edu;mdanderson.org 37 5 33938186 33938186 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RXFP3-91 NM_016568 exon1 c.C1341T p.Y447Y GCTCTACTACCCA . 78 28 8 0 . 0 0 0 0 0 UGT3A1 133688 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 35968210 35968210 + Nonsense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . UGT3A1-92 NM_152404 exon3 c.C222G p.Y74X AACTTGGTATGAT . 67 25 57 0 . 0 0 0 0 0 NIPBL 25836 broad.mit.edu 37 5 37000491 37000491 + Silent SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NIPBL-293 NM_015384 exon12 c.T3321C p.H1107H ACGACATAAAAAA . 81 10 94 1 . 0 0 0 0 0 C5orf42 65250 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 37107729 37107729 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C5orf42-94 NM_023073 exon52 c.C9569G p.S3190C TGGACAGACAGGC . 348 55 262 1 . 0 0 0 0 0 EGFLAM 133584 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 38418309 38418309 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EGFLAM-187 NM_001205301 exon12 c.G1636C p.D546H AGAATTGACATGA . 227 32 173 1 . 0 0 0 0 0 OSMR 9180 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 38881777 38881777 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OSMR-496 NM_001168355 exon4 c.A329T p.H110L CCACACACTTTGT . 111 46 113 0 . 0 0 0 0 0 C9 735 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 39308382 39308382 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C9-90 NM_001737 exon8 c.G1190T p.G397V TCAGCTCCAACAG . 223 77 203 0 . 0 0 0 0 0 PTGER4 5734 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 40692043 40692043 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PTGER4-658 NM_000958 exon3 c.A1030T p.I344F GAGAAGATCAAAT . 167 61 151 0 . 0 0 0 0 0 CARD6 84674 broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 40841514 40841514 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CARD6-230 NM_032587 exon1 c.C30G p.I10M AGAGATCATAGAA . 53 21 56 1 . 0 0 0 0 0 HCN1 348980 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 45353216 45353216 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HCN1-91 NM_021072 exon5 c.G1363T p.D455Y GAGGATCATTGAG . 62 23 59 0 . 0 0 0 0 0 ITGA2 3673 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 52368469 52368469 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ITGA2-226 NM_002203 exon19 c.G2373T p.E791D TGGTGAGGACGGA . 50 10 63 0 . 0 0 0 0 0 CDC20B 166979 bcgsc.ca 37 5 54410099 54410099 + Missense_Mutation SNP G G A rs444527 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CDC20B-90 NM_001170402 exon12 c.C1507T p.R503W ACACCCGGGTCTG . 257 8 255 3 G|0.861;A|0.139 0 0 0 0 0 GPX8 493869 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 54457048 54457048 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPX8-68 NM_001008397 exon2 c.G431T p.G144V TTCTAGGATCTGA . 36 9 44 0 . 0 0 0 0 0 ACTBL2 345651 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 56778494 56778494 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ACTBL2-25 NM_001017992 exon1 c.G41A p.G14E CCTGACCCATTAT . 160 72 179 0 . 0 0 0 0 0 PDE4D 5144 ucsc.edu;bcgsc.ca 37 5 58270494 58270494 + Silent SNP C C A rs7736186 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PDE4D-226 NM_001104631 exon15 c.G2427T p.T809T CTGTTACGTGTCA . 62 9 86 1 C|0.986;T|0.014 0 0 0 0 0 LRRC70 100130733 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 61876613 61876613 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_181506 exon2 c.G1348A p.E450K GAGACTGAGAACA . 92 38 105 0 . 0 0 0 0 0 ADAMTS6 11174 hgsc.bcm.edu;bcgsc.ca 37 5 64483914 64483914 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADAMTS6-226 NM_197941 exon22 c.2839delC p.R947fs CAGGCCGGTGTGT . 98 23 137 0 . 0 0 0 0 0 ADAMTS6 11174 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 64747376 64747376 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADAMTS6-226 NM_197941 exon7 c.C999G p.L333L GTGGGAGAGAATG . 248 26 196 0 . 0 0 0 0 0 ADAMTS6 11174 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 64755998 64755998 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADAMTS6-226 NM_197941 exon4 c.G630T p.S210S CTCACCCGAAACC . 81 21 76 0 . 0 0 0 0 0 F2RL1 2150 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 76129178 76129178 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . F2RL1-226 NM_005242 exon2 c.G746T p.G249V CCATTGGGGTCTT . 159 37 166 0 . 0 0 0 0 0 S100Z 170591 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 76173537 76173537 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . S100Z-91 NM_130772 exon4 c.G180T p.Q60H AGTGCAGGACCTG . 153 28 179 0 . 0 0 0 0 0 PAPD4 167153 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 78944447 78944447 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PAPD4-69 NM_173797 exon10 c.G829T p.E277X TGTGTGGAGTTTG . 99 18 137 0 . 0 0 0 0 0 CMYA5 202333 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 79025201 79025201 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CMYA5-77 NM_153610 exon2 c.A613G p.T205A CCGATTACTGGGG . 160 23 195 0 . 0 0 0 0 0 CMYA5 202333 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 79031613 79031613 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CMYA5-77 NM_153610 exon2 c.A7025T p.D2342V TTACTGATAGTAA . 123 31 117 1 . 0 0 0 0 0 THBS4 7060 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 79366521 79366521 + Missense_Mutation SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . THBS4-90 NM_003248 exon12 c.T1508G p.I503S ATGGCATTGGCGA . 213 45 199 1 . 0 0 0 0 0 VCAN 1462 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 82785935 82785935 + Missense_Mutation SNP C C A rs202176395 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . VCAN-238 NM_004385 exon3 c.C89A p.P30Q AAAGCCCACCGGT . 45 12 47 0 C|0.999;T|0.001 0 0 0 0 0 VCAN 1462 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 82808022 82808022 + Silent SNP C C A rs142777690 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . VCAN-238 NM_004385 exon6 c.C849A p.L283L GGAACTCCAGGCG . 102 52 161 1 C|0.999;T|0.001 0 0 0 0 0 EDIL3 10085 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 83356153 83356153 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EDIL3-131 NM_005711 exon9 c.C1103T p.T368I CCAGAGGTCCAGG . 140 21 128 1 . 0 0 0 0 0 MEF2C 4208 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 88047710 88047710 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MEF2C-704 NM_001193347 exon7 c.G607C p.G203R TTACACCAGGAGA . 192 44 211 0 . 0 0 0 0 0 POU5F2 134187 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 93077152 93077152 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_153216 exon1 c.G118T p.A40S CAGGGGCCGCCTG . 144 68 102 1 . 0 0 0 0 0 POU5F2 134187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 93077153 93077153 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_153216 exon1 c.G117T p.A39A AGGGGCCGCCTGG . 145 68 102 0 . 0 0 0 0 0 KIAA0825 285600 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 93805738 93805738 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIAA0825-91 NM_001145678 exon10 c.C1800T p.V600V AACTCTGACGCAG . 108 18 108 0 . 0 0 0 0 0 ANKRD32 84250 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 94027837 94027837 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ANKRD32-92 NM_032290 exon20 c.C2571A p.V857V GTGTGTCCAGGAA . 145 37 146 1 . 0 0 0 0 0 MCTP1 79772 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 94206155 94206155 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MCTP1-92 NM_024717 exon16 c.G2283T p.K761N AATGTACTTCTGT . 80 37 120 2 . 0 0 0 0 0 FAM81B 153643 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 94727146 94727146 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM81B-92 NM_152548 exon1 c.C53T p.S18L AAAAATCACAGAG . 123 26 129 0 . 0 0 0 0 0 FAM81B 153643 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 94772570 94772570 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM81B-92 NM_152548 exon7 c.C853T p.Q285X ATGGTCCAGGGGG . 103 50 94 0 . 0 0 0 0 0 TTC37 9652 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 94852291 94852291 + Splice_Site SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTC37-94 NM_014639 exon25 c.2516-1G>A . CAATACCTGAAAA . 108 51 126 0 . 0 0 0 0 0 ARSK 153642 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 94901701 94901701 + Splice_Site SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARSK-91 NM_198150 exon2 c.127-1G>T . TTTCCAGGATGGA . 38 8 53 0 . 0 0 0 0 0 SPATA9 83890 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 95018555 95018555 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPATA9-90 NM_031952 exon1 c.C4G p.P2A TGATTGGCATGGT . 138 55 151 1 . 0 0 0 0 0 SLCO6A1 133482 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 101794169 101794169 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLCO6A1-96 NM_173488 exon6 c.C1048G p.R350G GTTTACGTTTCCT . 52 20 38 0 . 0 0 0 0 0 PPIP5K2 23262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 102508858 102508858 + Splice_Site SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PPIP5K2-92 NM_001276277 exon20 c.2287-1G>T . TGCTCAGGAATAT . 55 26 80 0 . 0 0 0 0 0 APC 324 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 112175595 112175595 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . APC-12026 NM_001127510 exon17 c.G4304C p.R1435T CAAGCAGAAGTAA . 114 29 134 0 . 0 0 0 0 0 YTHDC2 64848 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 112899724 112899724 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . YTHDC2-92 NM_022828 exon20 c.G2611T p.V871L CCTTTTGTACTAC . 145 56 136 0 . 0 0 0 0 0 AQPEP 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 115318994 115318994 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_173800 exon2 c.G706A p.A236T CTGTTAGCGTCCC . 174 88 258 0 . 0 0 0 0 0 SEMA6A 57556 broad.mit.edu;bcgsc.ca 37 5 115813810 115813821 + In_Frame_Del DEL TGCCCATGATCC TGCCCATGATCC - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SEMA6A-92 NM_020796 exon14 c.1457_1468del p.486_490del GCTGCATGCCCAT . 144 11 203 0 . 0 0 0 0 0 HSD17B4 3295 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 118809620 118809620 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HSD17B4-92 NM_001199291 exon4 c.G205T p.D69Y GGAGGGGACTTCA . 128 20 165 0 . 0 0 0 0 0 MEGF10 84466 broad.mit.edu;ucsc.edu 37 5 126755743 126755743 + Missense_Mutation SNP C C A rs200050342 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MEGF10-94 NM_032446 exon13 c.C1434A p.H478Q CTGGCACGGGGTG . 95 16 98 2 C|1.000;T|0.000 0 0 0 0 0 MEGF10 84466 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 126769171 126769171 + Missense_Mutation SNP C C G rs202135671 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MEGF10-94 NM_032446 exon15 c.C1810G p.P604A TGTGCACCAGGCT . 166 40 164 0 C|0.999;A|0.000 0 0 0 0 0 FBN2 2201 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 127595479 127595479 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FBN2-146 NM_001999 exon65 c.G8407T p.V2803F TGTTGACGGGGCT . 127 22 145 0 . 0 0 0 0 0 FBN2 2201 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 127640733 127640733 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FBN2-146 NM_001999 exon45 c.G5716T p.G1906C ACAAGCCATGACT . 199 38 209 0 . 0 0 0 0 0 FBN2 2201 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 127782257 127782257 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FBN2-146 NM_001999 exon7 c.G869T p.G290V CAGTTTCCTCCTT . 77 11 83 0 . 0 0 0 0 0 FBN2 2201 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 127800433 127800433 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FBN2-146 NM_001999 exon6 c.C810A p.R270R TCCAGTGCGGATG . 45 16 61 0 . 0 0 0 0 0 SLC27A6 28965 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 128302151 128302151 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC27A6-90 NM_001017372 exon1 c.G321T p.T107T GGACACGGTGGCT . 86 37 105 0 . 0 0 0 0 0 LYRM7 90624 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 130522733 130522733 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LYRM7-68 NM_181705 exon4 c.G175T p.G59C AAAATAGGTTCTG . 126 29 143 1 . 0 0 0 0 0 RAD50 10111 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 131940656 131940656 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RAD50-229 NM_005732 exon16 c.T2683C p.S895P GAATTATCCACTG . 170 33 196 0 . 0 0 0 0 0 SHROOM1 134549 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 132160321 132160321 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SHROOM1-91 NM_133456 exon3 c.G1227T p.Q409H GGGCCCCTGGGAG . 103 50 103 0 . 0 0 0 0 0 GDF9 2661 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 132199862 132199862 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GDF9-227 NM_005260 exon1 c.C364T p.R122W TGTGCCGGGTACA . 135 23 156 1 . 0 0 0 0 0 TXNDC15 79770 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 134235224 134235224 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TXNDC15-154 NM_024715 exon5 c.T932A p.I311K ACCAAATAGGCCC . 89 18 63 0 . 0 0 0 0 0 TRPC7 57113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 135692848 135692848 + Nonsense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001167576 exon2 c.C228G p.Y76X CCCCATGTAGTCC . 167 28 158 0 . 0 0 0 0 0 TRPC7 57113 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 135692905 135692905 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001167576 exon2 c.G171T p.P57P GACCACCGGGATG . 150 33 158 1 . 0 0 0 0 0 EGR1 1958 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 137802588 137802588 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EGR1-227 NM_001964 exon2 c.G450T p.W150C CTTGTGGCCCGAG . 109 17 106 0 . 0 0 0 0 0 PCDHA1 56147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140167127 140167127 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHA1-23 NM_031411 exon1 c.C1252T p.L418L GAGAGCCTGTCGG . 245 60 132 0 . 0 0 0 0 0 PCDHA2 56146 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140176290 140176290 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHA2-94 NM_031495 exon1 c.G1741C p.V581L GAGCTGGTGCCGT . 412 98 90 0 . 0 0 0 0 0 PCDHA3 56145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140181421 140181421 + Silent SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHA3-98 NM_031497 exon1 c.A639T p.T213T AATAACAGCAATT . 51 24 71 0 . 0 0 0 0 0 PCDHA4 56144 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140187138 140187138 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHA4-96 NM_031500 exon1 c.G366A p.E122E CGTGGAGGTGAGG . 234 59 263 0 . 0 0 0 0 0 PCDHA6 56142 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140208235 140208235 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHA6-92 NM_031849 exon1 c.G559A p.D187N AACAGTGATGACA . 118 27 111 1 . 0 0 0 0 0 PCDHA8 56140 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140223235 140223235 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHA8-92 NM_031856 exon1 c.C2329A p.P777T TGCCTTCCTCCTG . 490 102 475 0 . 0 0 0 0 0 PCDHA10 56139 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140237814 140237814 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHA10-99 NM_031859 exon1 c.G2181T p.E727D CACCGAGGGCGCA . 309 164 73 1 . 0 0 0 0 0 PCDHA11 56138 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140249406 140249406 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHA11-67 NM_018902 exon1 c.C718A p.P240T AATGATCCAGAGT . 153 66 156 0 . 0 0 0 0 0 PCDHB1 29930 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140433080 140433080 + Missense_Mutation SNP G G C rs36090285 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHB1-90 NM_013340 exon1 c.G2025C p.Q675H GTTCCAGGATCCA . 150 73 191 0 G|0.995;A|0.005 0 0 0 0 0 PCDHB4 56131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140502574 140502574 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHB4-93 NM_018938 exon1 c.G994A p.V332I GGCACTGTAGTCA . 157 63 175 0 . 0 0 0 0 0 PCDHB16 57717 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140562215 140562215 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHB16-92 NM_020957 exon1 c.C81T p.G27G GGCGGGCGCCGAG . 130 46 140 0 . 0 0 0 0 0 PCDHB16 57717 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 5 140562775 140562775 + Missense_Mutation SNP C C G rs139379718 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHB16-92 NM_020957 exon1 c.C641G p.A214G TGACAGCGCTGGA . 65 13 88 0 C|0.997;T|0.003 0 0 0 0 0 PCDHB16 57717 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140562794 140562794 + Silent SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHB16-92 NM_020957 exon1 c.A660T p.P220P CTCTCCACCGCGA . 73 12 94 0 . 0 0 0 0 0 PCDHB16 57717 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 5 140563800 140563800 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHB16-92 NM_020957 exon1 c.G1666T p.D556Y GCCAACGACAACT . 222 90 22 0 . 0 0 0 0 0 PCDHB10 56126 broad.mit.edu;mdanderson.org 37 5 140573502 140573502 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHB10-92 NM_018930 exon1 c.C1377A p.F459L CCTGTTCGTCCGC . 134 34 86 0 . 0 0 0 0 0 PCDHB10 56126 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 5 140573565 140573565 + Silent SNP G G T rs61741789 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHB10-92 NM_018930 exon1 c.G1440T p.S480S AGACTCGGGCACC . 241 63 141 0 G|0.680;A|0.320 0 0 0 0 0 PCDHB10 56126 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140574448 140574448 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHB10-92 NM_018930 exon1 c.G2323T p.D775Y ATTTCGGATATTC . 141 55 172 0 . 0 0 0 0 0 PCDHB13 56123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140595009 140595009 + Silent SNP C C G rs201145725 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHB13-93 NM_018933 exon1 c.C1314G p.T438T TATGACCGTGCTG . 227 46 235 0 C|0.999;T|0.000 0 0 0 0 0 PCDHB13 56123 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140595284 140595284 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHB13-93 NM_018933 exon1 c.G1589T p.R530L AGTTCCGCGTGGG . 443 198 184 1 . 0 0 0 0 0 PCDHB14 56122 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140604121 140604121 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHB14-91 NM_018934 exon1 c.C1044A p.T348T AGTGACCATATCG . 76 11 81 0 . 0 0 0 0 0 PCDHB15 56121 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140625197 140625197 + Silent SNP C C A rs149965698 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHB15-156 NM_018935 exon1 c.C51A p.L17L GATTCTCCTTCTT . 64 30 66 1 C|1.000;T|0.000 0 0 0 0 0 PCDHGA1 56114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140710828 140710828 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHGA1-137 NM_018912 exon1 c.G577C p.E193Q CATCCAGAGATGG . 89 20 99 0 . 0 0 0 0 0 PCDHGA2 56113 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140720729 140720729 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHGA2-71 NM_018915 exon1 c.A2191T p.S731C GGAGGCAGCTTGA . 209 93 191 1 . 0 0 0 0 0 PCDHGA2 56113 broad.mit.edu;bcgsc.ca 37 5 140720802 140720802 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHGA2-71 NM_018915 exon1 c.A2264T p.H755L ATTCCCACGAGGT . 199 81 186 2 . 0 0 0 0 0 PCDHGA3 56112 broad.mit.edu;mdanderson.org 37 5 140725478 140725478 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHGA3-68 NM_032011 exon1 c.G1878T p.V626V CGAGGTGCGCACG . 435 69 74 0 . 0 0 0 0 0 PCDHGB1 56104 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140730366 140730366 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHGB1-33 NM_018922 exon1 c.A539T p.K180M CAACGAAGGAAAG . 122 36 170 1 . 0 0 0 0 0 PCDHGB1 56104 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140731133 140731133 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHGB1-33 NM_018922 exon1 c.C1306A p.L436M ATCACCCTGCACA . 161 76 170 0 . 0 0 0 0 0 PCDHGB1 56104 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140731260 140731260 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHGB1-33 NM_018922 exon1 c.G1433T p.G478V ATTTGGGACCCAA . 120 71 127 0 . 0 0 0 0 0 PCDHGA5 56110 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140744142 140744142 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHGA5-35 NM_032054 exon1 c.G245T p.G82V GAAGCGGCAGCTT . 113 30 119 0 . 0 0 0 0 0 PCDHGA5 56110 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140745589 140745589 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHGA5-35 NM_032054 exon1 c.C1692T p.Y564Y CCTGTACCCCGCC . 235 96 247 0 . 0 0 0 0 0 PCDHGA6 56109 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140753654 140753654 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHGA6-67 NM_018919 exon1 c.G4T p.A2S GTAATGGCGCCTC . 215 46 161 0 . 0 0 0 0 0 PCDHGA7 56108 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140762550 140762550 + Silent SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_032087 exon1 c.A84G p.A28A CTGGGCAGGACGT . 119 26 97 0 . 0 0 0 0 0 PCDHGA8 9708 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140773971 140773971 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_014004 exon1 c.C1591A p.L531M CAGCTACTGGTAA . 216 86 220 1 . 0 0 0 0 0 PCDHGA9 56107 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140782720 140782720 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_032089 exon1 c.C201T p.V67V CATCGTCTCTAGA . 91 22 94 0 . 0 0 0 0 0 PCDHGA9 56107 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140783342 140783342 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_032089 exon1 c.G823C p.G275R ATCAACGGAAAAG . 92 19 112 0 . 0 0 0 0 0 PCDHGB7 56099 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140798387 140798387 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHGB7-29 NM_018927 exon1 c.G961T p.A321S ATAGAAGCAAAAG . 128 20 162 0 . 0 0 0 0 0 PCDHGA12 26025 bcgsc.ca 37 5 140812559 140812559 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDHGA12-27 NM_032094 exon1 c.G2233T p.G745W GTGGACGGGGTGC . 128 57 108 3 . 0 0 0 0 0 YIPF5 81555 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 143541849 143541849 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . YIPF5-92 NM_001024947 exon5 c.A544T p.S182C GGACACTTGCCAC . 410 107 414 0 . 0 0 0 0 0 KCTD16 57528 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 143853384 143853384 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KCTD16-137 NM_020768 exon4 c.C994G p.P332A TGTGGTCCCGTGA . 413 68 418 1 . 0 0 0 0 0 LARS 51520 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 145509683 145509683 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LARS-90 NM_020117 exon25 c.G2526A p.G842G GTGCATCCCTTCC . 77 37 104 0 . 0 0 0 0 0 SH3TC2 79628 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 148406710 148406710 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SH3TC2-92 NM_024577 exon11 c.C2585A p.A862D TTCAAGGCCCGAA . 138 53 182 0 . 0 0 0 0 0 SH3TC2 79628 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 148407036 148407036 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SH3TC2-92 NM_024577 exon11 c.G2259T p.R753R GGTGCTCCGGTCT . 217 43 237 0 . 0 0 0 0 0 PCYOX1L 78991 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 148745675 148745675 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCYOX1L-91 NM_024028 exon4 c.G641T p.R214L TCCTGCGGGCCAG . 71 34 72 0 . 0 0 0 0 0 ARHGEF37 389337 bcgsc.ca 37 5 149011699 149011699 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARHGEF37-90 NM_001001669 exon13 c.G1973T p.G658V CTTCTGGCTTCTT . 267 77 217 4 . 0 0 0 0 0 PDGFRB 5159 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 149505087 149505087 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PDGFRB-1499 NM_002609 exon12 c.C1728G p.G576G CTCATGGCCGTCA . 339 92 245 0 . 0 0 0 0 0 CCDC69 26112 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 150565009 150565009 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CCDC69-92 NM_015621 exon7 c.A589T p.R197W GCCGCCTGTCCAG . 139 60 113 0 . 0 0 0 0 0 SLC36A2 153201 bcgsc.ca 37 5 150696572 150696572 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC36A2-91 NM_181776 exon10 c.C1258G p.L420V TGATGAGGGCCAG . 175 52 116 2 . 0 0 0 0 0 SLC36A2 153201 ucsc.edu;bcgsc.ca 37 5 150696573 150696573 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC36A2-91 NM_181776 exon10 c.C1257A p.A419A GATGAGGGCCAGG . 173 48 116 2 . 0 0 0 0 0 FAT2 2196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 150925322 150925322 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAT2-96 NM_001447 exon9 c.C5366A p.A1789D TCAGAGGCATGAA . 86 43 75 0 . 0 0 0 0 0 KIF4B 285643 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 154396953 154396953 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIF4B-1 NM_001099293 exon1 c.G3534T p.V1178V GCAGGTGCTGTCA . 224 61 162 0 . 0 0 0 0 0 TIMD4 91937 bcgsc.ca 37 5 156378664 156378664 + Missense_Mutation SNP C C T rs145234048 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TIMD4-92 NM_138379 exon3 c.G538A p.G180R GTGTTCCGGTTGT . 956 415 721 6 C|0.999;T|0.001 0 0 0 0 0 ADAM19 8728 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 156997966 156997966 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADAM19-294 NM_033274 exon2 c.C117T p.P39P CAGCTTGGGGCTG . 122 52 69 0 . 0 0 0 0 0 EBF1 1879 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 158139314 158139314 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EBF1-92 NM_024007 exon14 c.C1397A p.S466X TGTGGTGATACGC . 236 103 189 0 . 0 0 0 0 0 GABRA1 2554 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 161322775 161322775 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GABRA1-93 NM_001127644 exon9 c.C960G p.C320W CGTGTGCTATGCC . 272 126 237 2 . 0 0 0 0 0 GABRG2 2566 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 161576148 161576148 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GABRG2-95 NM_198903 exon9 c.C1077G p.S359R CCTCAGCACCATT . 172 39 116 0 . 0 0 0 0 0 CCNG1 900 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 162869514 162869514 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CCNG1-725 NM_199246 exon7 c.G831A p.L277L GCAATTGAAGCAT . 205 76 211 1 . 0 0 0 0 0 TENM2 57451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 167645293 167645293 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001122679 exon23 c.G4370T p.S1457I CACTCAGCAAACT . 306 101 252 0 . 0 0 0 0 0 DOCK2 1794 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 169141144 169141144 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DOCK2-97 NM_004946 exon18 c.G1772T p.G591V TTGGGGGGCTTTC . 187 102 111 1 . 0 0 0 0 0 FAM196B 100131897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 169310385 169310385 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001129891 exon2 c.G518C p.R173T GGGACCCTTGGGA . 144 57 118 0 . 0 0 0 0 0 DOCK2 1794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 169461501 169461501 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DOCK2-97 NM_004946 exon35 c.G3566T p.R1189L ATTACCGGGGTGT . 169 87 113 0 . 0 0 0 0 0 FOXI1 2299 broad.mit.edu;bcgsc.ca 37 5 169533089 169533089 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FOXI1-229 NM_012188 exon1 c.G128T p.S43I TGCCCAGCCCTCA . 345 102 166 1 . 0 0 0 0 0 KCNMB1 3779 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 169810783 169810783 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KCNMB1-92 NM_004137 exon3 c.T206G p.L69R ACCTTCTTGCCCT . 182 56 143 0 . 0 0 0 0 0 TLX3 30012 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 170736778 170736778 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TLX3-658 NM_021025 exon1 c.G409A p.D137N GTGAAAGACCGCT . 121 44 46 0 . 0 0 0 0 0 ARL10 285598 hgsc.bcm.edu 37 5 175792605 175792605 + Silent SNP G G C rs2303667 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARL10-91 NM_173664 exon1 c.G39C p.L13L GGCGCTGGGCGGC . 17 7 2 0 G|0.585;C|0.415 0 0 0 0 0 EIF4E1B 253314 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 176070253 176070253 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001099408 exon4 c.C186A p.H62Q GCTGCACCCCTTG . 210 92 166 1 . 0 0 0 0 0 ADAMTS2 9509 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 178770799 178770799 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADAMTS2-228 NM_021599 exon2 c.C503A p.S168Y ACAGAGGAGGCTT . 138 51 47 0 . 0 0 0 0 0 C5orf60 285679 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 179069972 179069972 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001142306 exon4 c.C581A p.S194Y TTGGAGGAGCTCA . 506 209 364 0 . 0 0 0 0 0 MAML1 9794 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 179195985 179195985 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MAML1-848 NM_014757 exon3 c.G1866T p.K622N AATGAAGCAGCAT . 187 67 157 1 . 0 0 0 0 0 BTNL9 153579 hgsc.bcm.edu 37 5 180486429 180486429 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BTNL9-91 NM_152547 exon11 c.G1175T p.R392L TGGGCCGCCGCAG . 20 13 0 0 . 0 0 0 0 0 IRF4 3662 ucsc.edu;bcgsc.ca 37 6 401669 401669 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IRF4-659 NM_002460 exon7 c.C991T p.Q331X CTGTGCCAGAGCA . 247 92 219 3 . 0 0 0 0 0 BPHL 670 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 3140673 3140673 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BPHL-90 NM_004332 exon6 c.C718A p.H240N ATTGTGCACGGTG . 226 102 217 1 . 0 0 0 0 0 CDYL 9425 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 4954182 4954182 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CDYL-90 NM_004824 exon7 c.G1527T p.L509L GGAGCTGGAGCAG . 150 45 146 0 . 0 0 0 0 0 PPP1R3G 648791 hgsc.bcm.edu 37 6 5086070 5086070 + Silent SNP A A G rs667752 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PPP1R3G-136 NM_001145115 exon1 c.A351G p.A117A GGACGCACAGCTC . 26 26 0 0 A|0.006;G|0.994 0 0 0 0 0 DSP 1832 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 7579564 7579564 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DSP-518 NM_004415 exon23 c.C3141A p.A1047A AGATGCCAACTCG . 104 34 112 1 . 0 0 0 0 0 ATXN1 6310 hgsc.bcm.edu;broad.mit.edu 37 6 16328522 16328522 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ATXN1-93 NM_001128164 exon7 c.G20T p.R7L TTGCTCCGCTCTT . 24 5 11 0 . 0 0 0 0 0 NHLRC1 378884 hgsc.bcm.edu 37 6 18122526 18122526 + Silent SNP A A G rs115931931 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NHLRC1-90 NM_198586 exon1 c.T312C p.H104H GGCGCGATGGGCG . 10 6 0 0 A|0.885;G|0.115 0 0 0 0 0 CDKAL1 54901 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 21000542 21000542 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CDKAL1-92 NM_017774 exon11 c.G994T p.E332X CTCATGGAAATGA . 61 17 55 0 . 0 0 0 0 0 GPLD1 2822 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 24473883 24473883 + Missense_Mutation SNP C C A rs139020496 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPLD1-228 NM_001503 exon6 c.G454T p.G152C AGGAGCCGTGAAA . 88 49 60 0 C|1.000;T|0.000 0 0 0 0 0 SLC17A2 10246 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 25918769 25918769 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC17A2-91 NM_005835 exon6 c.G595C p.V199L CCCCCACACAGAG . 173 60 130 1 . 0 0 0 0 0 HIST1H2AC 8334 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 26124666 26124666 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HIST1H2AC-90 NM_003512 exon1 c.A206T p.N69I CCGGCAACGCGGC . 410 123 324 3 . 0 0 0 0 0 HIST1H2BH 8345 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 26252078 26252078 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HIST1H2BH-93 NM_003524 exon1 c.T200A p.V67D CCTTTGTCAACGA . 283 116 249 1 . 0 0 0 0 0 BTN3A3 10384 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 26451901 26451901 + Splice_Site SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BTN3A3-90 NM_006994 exon11 c.1019-2A>T . CTCTGCAGCGGAT . 133 40 145 0 . 0 0 0 0 0 HIST1H2BM 8342 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 27783029 27783029 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HIST1H2BM-131 NM_003521 exon1 c.A208T p.I70F AACGACATCTTTG . 193 60 200 0 . 0 0 0 0 0 TRIM27 5987 hgsc.bcm.edu;broad.mit.edu 37 6 28872409 28872409 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRIM27-684 NM_006510 exon8 c.C980G p.P327R AGGCTGGGGTAGG . 6 4 8 0 . 0 0 0 0 0 GABBR1 2550 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 29581230 29581230 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GABBR1-521 NM_001470 exon12 c.G1356T p.K452N CAGTCGCTTGGTT . 149 52 125 0 . 0 0 0 0 0 TRIM10 10107 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 30126189 30126189 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRIM10-226 NM_052828 exon3 c.G743T p.R248M AGCTCCCTTGCTG . 114 31 110 0 . 0 0 0 0 0 MICB 4277 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 31474946 31474946 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MICB-90 NM_005931 exon4 c.G761C p.G254A AGTGGGGGGATGT . 315 54 278 0 . 0 0 0 0 0 C6orf47 57827 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 31627653 31627653 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C6orf47-91 NM_021184 exon1 c.G72T p.P24P GTAAGGCGGGTCA . 154 49 136 0 . 0 0 0 0 0 LY6G6E 79136 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 31681633 31681633 + RNA SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . . . . . TGCACCCCGAGAT . 139 45 99 0 . 0 0 0 0 0 VARS 7407 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 31759413 31759413 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . VARS-93 NM_006295 exon8 c.C1074T p.N358N GATGGCGTTGGTG . 251 43 231 0 . 0 0 0 0 0 NELFE 7936 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 31922485 31922485 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_002904 exon7 c.G589A p.D197N CTCTGTCCCGGTT . 78 29 83 0 . 0 0 0 0 0 NELFE 7936 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 31926215 31926215 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_002904 exon2 c.G9A p.V3V GGGTATCACCAAC . 78 34 63 0 . 0 0 0 0 0 RXRB 6257 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 33164382 33164382 + Silent SNP C C A rs148086899 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RXRB-189 NM_021976 exon5 c.G822T p.A274A CTGTACCGCTGCA . 60 12 67 0 C|1.000;T|0.000 0 0 0 0 0 ZBTB22 9278 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 33283358 33283358 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZBTB22-69 NM_001145338 exon2 c.G1336T p.G446W GGTTCCCTGGTGG . 259 93 236 0 . 0 0 0 0 0 PHF1 5252 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 33381015 33381015 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PHF1-226 NM_002636 exon5 c.G380C p.G127A CCCCTGGAGAGGG . 122 57 142 0 . 0 0 0 0 0 GRM4 2914 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 34101175 34101175 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GRM4-525 NM_001256811 exon2 c.G99T p.K33N TTTGGGCTTTCCC . 210 76 127 0 . 0 0 0 0 0 DNAH8 1769 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 38890846 38890846 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DNAH8-615 NM_001206927 exon72 c.G10675T p.D3559Y CTTAATGACGCTG . 37 9 45 0 . 0 0 0 0 0 KCNK5 8645 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 39162077 39162077 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KCNK5-227 NM_003740 exon4 c.G502T p.V168L CCCACACGATGAA . 401 134 358 1 . 0 0 0 0 0 KCNK16 83795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 39284652 39284652 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KCNK16-229 NM_001135106 exon4 c.G567T p.M189I GAAGACCATGGGT . 112 40 106 0 . 0 0 0 0 0 DAAM2 23500 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 39851832 39851832 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DAAM2-228 NM_015345 exon15 c.A1940T p.Y647F CAGCCTACCAGAG . 96 45 91 0 . 0 0 0 0 0 LRFN2 57497 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 40359771 40359771 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRFN2-93 NM_020737 exon3 c.G2281A p.G761S GCATGCCGTTGAC . 312 116 233 1 . 0 0 0 0 0 FOXP4 116113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 41555166 41555166 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FOXP4-289 NM_001012426 exon7 c.C788G p.A263G CGTTTGCCGCTCC . 333 42 192 0 . 0 0 0 0 0 PTCRA 171558 hgsc.bcm.edu 37 6 42893152 42893152 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PTCRA-92 NM_001243168 exon4 c.C623A p.S208Y TCGGCTCCCATCG . 78 31 5 0 . 0 0 0 0 0 PEX6 5190 hgsc.bcm.edu 37 6 42946490 42946490 + Silent SNP C C A rs9462858 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PEX6-91 NM_000287 exon1 c.G399T p.V133V TCCGGGCACTGGG . 15 6 0 0 C|0.673;A|0.327 0 0 0 0 0 KLC4 89953 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 43038449 43038449 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KLC4-94 NM_201523 exon8 c.C1055G p.P352R ATCATCCAGATGT . 293 111 207 0 . 0 0 0 0 0 SLC22A7 10864 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 43266402 43266402 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC22A7-90 NM_006672 exon1 c.G306C p.G102G CCGTGGGGAGCTG . 130 55 103 0 . 0 0 0 0 0 TJAP1 93643 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 43472938 43472938 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TJAP1-90 NM_001146016 exon11 c.G1019T p.R340L AGGTTCGGATCCC . 107 35 122 0 . 0 0 0 0 0 POLR1C 9533 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 43488718 43488718 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . POLR1C-90 NM_203290 exon8 c.G854T p.R285I TCAGCAGAGAAAT . 91 34 68 0 . 0 0 0 0 0 TDRD6 221400 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 46657182 46657182 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TDRD6-138 NM_001168359 exon1 c.G1317A p.S439S ACAGTCGTGTTGC . 50 21 56 0 . 0 0 0 0 0 PLA2G7 7941 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 46677128 46677128 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLA2G7-90 NM_005084 exon9 c.G805T p.V269L CAATTACTGCTAT . 80 16 53 0 . 0 0 0 0 0 ANKRD66 100287718 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 46717703 46717703 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001162435 exon2 c.G140C p.R47T TGCCCAGAGTTTC . 77 14 57 0 . 0 0 0 0 0 GPR111 222611 hgsc.bcm.edu 37 6 47649787 47649793 + Frame_Shift_Del DEL GCAGATG GCAGATG - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 GCAGATG GCAGATG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR111-91 NM_153839 exon7 c.1288_1294del p.430_432del CTGATGGCAGATG . 278 0 261 0 . 0 0 0 0 0 GPR111 222611 hgsc.bcm.edu 37 6 47649791 47649791 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR111-91 NM_153839 exon7 c.A1292G p.D431G TGGCAGATGTGTG . 278 34 269 0 . 0 0 0 0 0 RHAG 6005 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 49574560 49574560 + Splice_Site SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RHAG-154 NM_000324 exon10 c.1212+1G>A . ACAGTACCTTCCA . 82 33 76 0 . 0 0 0 0 0 CRISP3 10321 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 49701562 49701562 + Splice_Site SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CRISP3-92 NM_001190986 exon6 c.347-1G>T . TTAGACCTAAGAA . 151 63 124 0 . 0 0 0 0 0 PGK2 5232 hgsc.bcm.edu;bcgsc.ca 37 6 49754216 49754216 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PGK2-91 NM_138733 exon1 c.685delG p.D229fs CTTTGTCCAGCAT . 289 86 322 2 . 0 0 0 0 0 PGK2 5232 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 49754711 49754711 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PGK2-91 NM_138733 exon1 c.C190G p.L64V GACCTAGATGACT . 182 61 164 0 . 0 0 0 0 0 DEFB113 245927 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 49936521 49936521 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DEFB113-90 NM_001037729 exon2 c.G118T p.G40C AAGCACCACGAAC . 77 28 99 0 . 0 0 0 0 0 PKHD1 5314 ucsc.edu;bcgsc.ca 37 6 51774097 51774097 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PKHD1-603 NM_170724 exon40 c.G6666T p.L2222L TCCCACCAGAGTG . 160 50 161 2 . 0 0 0 0 0 PKHD1 5314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 51907711 51907711 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PKHD1-603 NM_170724 exon27 c.C3043A p.L1015I CATTTAGGAAGAG . 111 31 120 0 . 0 0 0 0 0 PKHD1 5314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 51907765 51907765 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PKHD1-603 NM_170724 exon27 c.A2989T p.M997L CCAACATCAAGAT . 155 63 161 0 . 0 0 0 0 0 PKHD1 5314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 51908447 51908447 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PKHD1-603 NM_170724 exon26 c.G2797T p.V933F AATGGACACAGGG . 110 41 106 0 . 0 0 0 0 0 MCM3 4172 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 52141266 52141266 + Missense_Mutation SNP G G A rs144158830 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MCM3-228 NM_002388 exon9 c.C1309T p.R437C CCAGACGGCGCTC . 127 54 117 0 G|0.999;A|0.001 0 0 0 0 0 GCLC 2729 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 53409375 53409375 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GCLC-515 NM_001197115 exon1 c.G69T p.R23R GTGCCGCCGCACG . 114 41 47 0 . 0 0 0 0 0 FAM83B 222584 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 54791229 54791229 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM83B-96 NM_001010872 exon3 c.G505T p.A169S GTTGAGGCATCAA . 66 24 64 0 . 0 0 0 0 0 DST 667 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 56426291 56426291 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DST-523 NM_015548 exon38 c.G6256T p.G2086C AGAGGCCAAGATC . 121 48 95 1 . 0 0 0 0 0 RNU6-71 100873774 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 56468904 56468904 + RNA SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . . . . . CTCCAACATGTTC . 73 25 88 0 . 0 0 0 0 0 DST 667 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 56480710 56480710 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DST-523 NM_001723 exon24 c.C7555T p.Q2519X CACACTGTCGCAG . 153 51 138 1 . 0 0 0 0 0 DST 667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 56495106 56495106 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DST-523 NM_001723 exon17 c.G2607T p.L869L TTCACACAGTTTA . 59 10 85 0 . 0 0 0 0 0 ZNF451 26036 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 56965611 56965611 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF451-93 NM_001257273 exon4 c.G397T p.E133X ATCTCTGAGACAG . 61 18 61 0 . 0 0 0 0 0 KHDRBS2 202559 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 62407105 62407105 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KHDRBS2-272 NM_152688 exon8 c.G947T p.S316I CCGTAGCTGTCAT . 114 32 80 0 . 0 0 0 0 0 EYS 346007 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 65300987 65300987 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EYS-660 NM_001142800 exon26 c.G4773T p.A1591A TAATATCGCTGAG . 91 27 99 1 . 0 0 0 0 0 EYS 346007 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 65655797 65655797 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EYS-660 NM_001142800 exon15 c.G2270C p.C757S CACACACACTGGT . 52 16 50 0 . 0 0 0 0 0 EYS 346007 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 66053984 66053984 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EYS-660 NM_001142801 exon10 c.G1546C p.D516H CAGGATCGTTCAC . 185 64 185 1 . 0 0 0 0 0 BAI3 577 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 69943298 69943298 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BAI3-1148 NM_001704 exon18 c.C2597A p.P866H AGCAACCTAGAGA . 158 49 199 0 . 0 0 0 0 0 COL19A1 1310 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 70639346 70639346 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COL19A1-156 NM_001858 exon6 c.G420T p.K140N AAAGAAGGTGGTG . 116 45 119 1 . 0 0 0 0 0 COL9A1 1297 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 70981789 70981789 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COL9A1-94 NM_001851 exon13 c.C1068A p.G356G ACCACGGCCCTAA . 160 40 169 2 . 0 0 0 0 0 B3GAT2 135152 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 71665781 71665781 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . B3GAT2-93 NM_080742 exon1 c.G352T p.D118Y CCGCGTCCTCCAC . 99 34 16 0 . 0 0 0 0 0 KCNQ5 56479 hgsc.bcm.edu 37 6 73332040 73332040 + Silent SNP C C G rs3734212 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KCNQ5-158 NM_001160132 exon1 c.C123G p.S41S GGAGTCCGGCCGG . 8 8 0 0 C|0.505;G|0.495 0 0 0 0 0 KHDC3L 154288 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 74072990 74072990 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001017361 exon2 c.G342T p.Q114H GCTCCAGGCGAAA . 180 63 106 1 . 0 0 0 0 0 COL12A1 1303 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 75814965 75814965 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COL12A1-142 NM_004370 exon54 c.G8222T p.C2741F TGTGTACATGTGC . 176 60 211 0 . 0 0 0 0 0 TTK 7272 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 80744821 80744821 + Silent SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTK-1299 NM_003318 exon15 c.A1734G p.L578L TAAACTACAACAA . 172 73 207 1 . 0 0 0 0 0 SNAP91 9892 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 84290239 84290239 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SNAP91-23 NM_001242792 exon23 c.C2229A p.P743P AGGACTGGGTGGT . 240 97 262 0 . 0 0 0 0 0 TBX18 9096 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 85446831 85446831 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TBX18-73 NM_001080508 exon8 c.G1396T p.V466L TGTTCACGGAGGT . 161 58 158 1 . 0 0 0 0 0 HTR1E 3354 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 87725124 87725124 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HTR1E-93 NM_000865 exon2 c.C72G p.L24L GATGCTCATTTGC . 339 132 300 0 . 0 0 0 0 0 RARS2 57038 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 88279286 88279286 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RARS2-92 NM_020320 exon2 c.C59T p.P20L TCTGGTGGAAGAT . 79 11 92 1 . 0 0 0 0 0 SRSF12 135295 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 89827555 89827555 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SRSF12-90 NM_080743 exon1 c.G52T p.A18S CGTCCGCGACGTT . 177 69 49 0 . 0 0 0 0 0 BACH2 60468 ucsc.edu;bcgsc.ca 37 6 90660573 90660573 + Missense_Mutation SNP C C G rs34335140 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BACH2-231 NM_021813 exon7 c.G1252C p.A418P AGAGAGCCTCCAA . 94 28 112 2 C|0.993;T|0.007 0 0 0 0 0 MAP3K7 6885 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 91233443 91233443 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MAP3K7-980 NM_145331 exon14 c.A1416T p.S472S CTTTTCTGAGGTT . 150 69 151 0 . 0 0 0 0 0 UFL1 23376 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 96999750 96999750 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_015323 exon17 c.G1936T p.A646S TCTGCAGCAGAAG . 196 57 217 1 . 0 0 0 0 0 MMS22L 253714 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 97599708 97599708 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MMS22L-92 NM_198468 exon23 c.G3421A p.V1141I CTTTTACCATGTA . 82 20 77 1 . 0 0 0 0 0 POU3F2 5454 hgsc.bcm.edu 37 6 99283376 99283376 + Silent SNP T T G rs195860 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . POU3F2-90 NM_005604 exon1 c.T627G p.G209G GGCCGGTCTGCAC . 7 7 0 0 T|0.089;G|0.911 0 0 0 0 0 PRDM13 59336 broad.mit.edu;bcgsc.ca 37 6 100062487 100062487 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRDM13-135 NM_021620 exon4 c.T1976A p.L659H GTCTGCTCGCCAA . 184 77 50 1 . 0 0 0 0 0 MCHR2 84539 bcgsc.ca;mdanderson.org 37 6 100382334 100382334 + Missense_Mutation SNP C C A rs181709988 by1000genomes;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MCHR2-525 NM_001040179 exon5 c.G647T p.C216F ATATAGCACACCA . 31 13 40 1 C|1.000;G|0.000 0 0 0 0 0 GRIK2 2898 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 102124584 102124584 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GRIK2-157 NM_021956 exon4 c.G628C p.D210H ACAAAGGATGCAA . 195 74 196 0 . 0 0 0 0 0 SCML4 256380 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 108041954 108041954 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SCML4-91 NM_198081 exon6 c.C926T p.A309V CTGGAGGCTGGAG . 75 23 57 1 . 0 0 0 0 0 SCML4 256380 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 108068044 108068044 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SCML4-91 NM_198081 exon4 c.G336A p.R112R CTTCTTCCTCTCC . 138 42 106 1 . 0 0 0 0 0 LACE1 246269 broad.mit.edu 37 6 108677903 108677903 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LACE1-90 NM_145315 exon5 c.G527C p.R176P TACATCGCCTTAA . 53 6 42 0 . 0 0 0 0 0 RPF2 84154 broad.mit.edu 37 6 111329294 111329294 + Silent SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RPF2-92 NM_032194 exon7 c.T447C p.D149D CGATGATTTCGAT . 151 4 110 0 . 0 0 0 0 0 WISP3 8838 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 112375568 112375568 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WISP3-90 NM_198239 exon1 c.G62T p.G21V TGCAGGGGCTCCT . 121 42 107 0 . 0 0 0 0 0 HS3ST5 222537 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 114378755 114378755 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HS3ST5-92 NM_153612 exon2 c.A707T p.K236I AGATGTTTGGTGT . 139 55 113 0 . 0 0 0 0 0 HS3ST5 222537 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 114379130 114379130 + Missense_Mutation SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HS3ST5-92 NM_153612 exon2 c.A332C p.N111T TGTAGGTTCAGCA . 99 10 65 0 . 0 0 0 0 0 GPRC6A 222545 hgsc.bcm.edu 37 6 117116960 117116960 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPRC6A-96 NM_148963 exon5 c.1587delG p.G529fs CATTTGCCCAGGA . 74 23 57 2 . 0 0 0 0 0 GPRC6A 222545 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 117130541 117130541 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPRC6A-96 NM_148963 exon2 c.G434T p.G145V CCAGAACCTATGA . 109 50 85 0 . 0 0 0 0 0 ROS1 6098 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 117709087 117709087 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ROS1-1353 NM_002944 exon13 c.C1870T p.H624Y AAATATGAGTGAC . 178 57 132 2 . 0 0 0 0 0 C6orf170 221322 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 121563361 121563361 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C6orf170-92 NM_152730 exon18 c.G2143T p.A715S TTTTTGCATATCG . 77 21 85 0 . 0 0 0 0 0 NKAIN2 154215 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 124979429 124979429 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NKAIN2-23 NM_001040214 exon4 c.C371T p.P124L CTGCCCCAGACTG . 184 75 183 1 . 0 0 0 0 0 LAMA2 3908 ucsc.edu;bcgsc.ca 37 6 129641765 129641765 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LAMA2-162 NM_000426 exon28 c.G4141T p.D1381Y AAATGTGATTGTC . 144 45 140 3 . 0 0 0 0 0 LAMA2 3908 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 129766860 129766860 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LAMA2-162 NM_000426 exon45 c.G6323T p.R2108L CTGACCGGCTAAT . 132 52 133 1 . 0 0 0 0 0 TMEM200A 114801 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 130761684 130761684 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMEM200A-23 NM_001258277 exon3 c.C117G p.P39P GAAGCCCATCAGG . 88 41 116 0 . 0 0 0 0 0 TMEM200A 114801 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 130762826 130762826 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMEM200A-23 NM_001258277 exon3 c.C1259A p.P420H GTTGGCCTAGGTT . 73 27 52 0 . 0 0 0 0 0 TMEM200A 114801 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 130762909 130762909 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMEM200A-23 NM_001258277 exon3 c.G1342T p.V448F CCCCAAGTTGCCA . 55 22 62 0 . 0 0 0 0 0 TAAR5 9038 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 132910041 132910041 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TAAR5-91 NM_003967 exon1 c.T785A p.L262H CACAAGAGGTATA . 310 120 269 2 . 0 0 0 0 0 TAAR5 9038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 132910108 132910108 + Missense_Mutation SNP G G T rs188569215 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TAAR5-91 NM_003967 exon1 c.C718A p.L240M CAGCCAGGCTTTT . 140 55 125 0 G|0.999;A|0.001 0 0 0 0 0 VNN1 8876 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 133032885 133032885 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . VNN1-93 NM_004666 exon2 c.C304T p.P102S CTTCAGGGTCTGG . 114 27 96 0 . 0 0 0 0 0 EYA4 2070 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 133836501 133836501 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EYA4-578 NM_172105 exon17 c.G1544T p.R515M AGTTAAGGGCAGA . 111 25 114 1 . 0 0 0 0 0 AHI1 54806 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 135754223 135754223 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AHI1-227 NM_001134832 exon15 c.G2208T p.L736F TCGGACCAATATG . 189 62 166 0 . 0 0 0 0 0 AHI1 54806 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 135754324 135754324 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AHI1-227 NM_001134832 exon15 c.G2107T p.A703S ATTTAGCCGTGTA . 89 34 116 0 . 0 0 0 0 0 BCLAF1 9774 hgsc.bcm.edu 37 6 136582203 136582396 + Frame_Shift_Del DEL TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT TGGTGGGTGCAAGTTCTGCTCTGTTGTAATCTTACTTCATATTTATTATTCCTAAAAGAGAGAGAAAAAATTAAAGATTAACAAAAGATGCGGAGAGTGAAAAGGAACCATATTAATAATTGTTCCTAAAAATGAAATAATTCACCCACCAAACCTATATCAAAAAAAATCTGTCAGAATCACAAGTTGAAATT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BCLAF1-228 NM_014739 exon13 c.2758_3016del p.920_921del AAAAAATGGTGGG . 143 0 145 0 . 0 0 0 0 0 BCLAF1 9774 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 136599766 136599766 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BCLAF1-228 NM_014739 exon4 c.G253T p.G85X TACCTCCTCCTCC . 200 21 147 0 . 0 0 0 0 0 TXLNB 167838 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 139563758 139563758 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TXLNB-91 NM_153235 exon10 c.C1960A p.P654T GTGGGGGCTGCCT . 105 20 70 0 . 0 0 0 0 0 GPR126 57211 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 142691775 142691775 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR126-91 NM_198569 exon4 c.G914T p.G305V TAAAAGGGGACAT . 136 51 149 0 . 0 0 0 0 0 ADAT2 134637 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 143749780 143749780 + Silent SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADAT2-90 NM_182503 exon5 c.A501G p.L167L GGTCTTTAACATT . 89 36 88 0 . 0 0 0 0 0 AKAP12 9590 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 151672276 151672276 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AKAP12-293 NM_005100 exon4 c.C2750T p.S917L CTGCTTCAGTGAC . 135 27 132 0 . 0 0 0 0 0 CCDC170 80129 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 151917690 151917690 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_025059 exon9 c.T1688A p.L563Q CCAAACTGGCCGA . 161 51 126 0 . 0 0 0 0 0 ESR1 2099 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 152201872 152201872 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ESR1-1042 NM_000125 exon3 c.C726G p.L242L CCGGCTCCGTAAA . 84 33 73 1 . 0 0 0 0 0 SYNE1 23345 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 152647669 152647669 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SYNE1-607 NM_182961 exon79 c.15055delG p.A5019fs TGCCTGCCAGCTG . 126 33 115 0 . 0 0 0 0 0 SYNE1 23345 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 152737529 152737529 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SYNE1-607 NM_033071 exon41 c.C6064T p.Q2022X TCTGCTGAAGAGC . 34 11 40 0 . 0 0 0 0 0 SYNE1 23345 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 152793441 152793441 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SYNE1-607 NM_033071 exon15 c.C1479G p.A493A CCTCTCGGCCATG . 112 35 92 0 . 0 0 0 0 0 MYCT1 80177 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 153042879 153042879 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYCT1-91 NM_025107 exon2 c.G199T p.D67Y TCAGAGGACCTTA . 62 30 46 0 . 0 0 0 0 0 IPCEF1 26034 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 154587053 154587053 + Missense_Mutation SNP C C A rs139019503 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IPCEF1-90 NM_001130699 exon4 c.G29T p.S10I AGAGCACTGCCAT . 119 44 120 0 C|1.000;T|0.000 0 0 0 0 0 TIAM2 26230 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 155450837 155450837 + Silent SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TIAM2-93 NM_012454 exon3 c.A480T p.R160R CCCCCGAGTGCTC . 60 20 62 1 . 0 0 0 0 0 TIAM2 26230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 155458506 155458506 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TIAM2-93 NM_012454 exon4 c.C1390G p.R464G TTCATGCGAGAGT . 120 36 130 0 . 0 0 0 0 0 NOX3 50508 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 155764494 155764494 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NOX3-91 NM_015718 exon5 c.G399T p.E133D GGCCTCCTCGGAC . 218 85 189 0 . 0 0 0 0 0 ARID1B 57492 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 157505500 157505500 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARID1B-154 NM_020732 exon13 c.G3481T p.E1161X GGGGAGGAGCCCC . 187 75 141 0 . 0 0 0 0 0 RSPH3 83861 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 159401950 159401950 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RSPH3-92 NM_031924 exon6 c.C1141T p.Q381X CCCACTGCTGTTT . 156 47 124 0 . 0 0 0 0 0 FNDC1 84624 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 159646610 159646610 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FNDC1-138 NM_032532 exon8 c.T928A p.W310R GCCAGGTGGGATT . 193 66 154 2 . 0 0 0 0 0 IGF2R 3482 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 160468850 160468850 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IGF2R-118 NM_000876 exon17 c.2256delC p.F752fs CAACTTCCGGTGG . 123 39 100 0 . 0 0 0 0 0 IGF2R 3482 hgsc.bcm.edu 37 6 160468851 160468852 + Frame_Shift_Del DEL CG CG - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CG CG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IGF2R-118 NM_000876 exon17 c.2257_2258del p.753_753del AACTTCCGGTGGT . 120 0 100 0 . 0 0 0 0 0 IGF2R 3482 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 6 160468852 160468852 + Missense_Mutation SNP G G T rs141234361 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IGF2R-118 NM_000876 exon17 c.G2258T p.R753L ACTTCCGGTGGTA . 121 40 100 0 G|1.000;A|0.000 0 0 0 0 0 PLG 5340 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 161134147 161134147 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLG-94 NM_000301 exon5 c.T537A p.L179L CATTCTTGAGTGT . 137 46 100 0 . 0 0 0 0 0 PDE10A 10846 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 165801852 165801852 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PDE10A-519 NM_001130690 exon17 c.G1747T p.A583S GAGCGGCCAGAGG . 177 55 130 0 . 0 0 0 0 0 T 6862 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 166580287 166580287 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . T-516 NM_003181 exon3 c.C264A p.Y88X GAAGGAGTACATG . 225 81 135 0 . 0 0 0 0 0 UNC93A 54346 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 167721323 167721323 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . UNC93A-90 NM_018974 exon7 c.G1033T p.D345Y CGTGCTGACCATC . 204 70 186 1 . 0 0 0 0 0 TTLL2 83887 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 167755029 167755029 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTLL2-92 NM_031949 exon3 c.A1641T p.K547N TGGCAAAGCTCCA . 165 54 113 0 . 0 0 0 0 0 KIF25 3834 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 168442775 168442775 + Missense_Mutation SNP C C T rs138311357 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIF25-92 NM_030615 exon7 c.C773T p.A258V GGCATGCGGAGCA . 219 33 182 1 C|0.999;A|0.001 0 0 0 0 0 THBS2 7058 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 169629675 169629675 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . THBS2-95 NM_003247 exon15 c.G2251T p.D751Y TCTCATCGGTCAC . 97 31 69 0 . 0 0 0 0 0 MAD1L1 8379 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 1976421 1976421 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MAD1L1-1083 NM_003550 exon17 c.G1709T p.R570L CGCAGTCGCTCGC . 117 40 18 0 . 0 0 0 0 0 CARD11 84433 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 2976779 2976779 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CARD11-870 NM_032415 exon9 c.G1233T p.E411D CTTCTCCTCCAGC . 145 40 157 0 . 0 0 0 0 0 CARD11 84433 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 2978414 2978414 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CARD11-870 NM_032415 exon7 c.G916C p.E306Q CGTGTTCCAAGAT . 75 13 61 0 . 0 0 0 0 0 TNRC18 84629 hgsc.bcm.edu 37 7 5372406 5372406 + Silent SNP G G T rs13238738 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TNRC18-46 NM_001080495 exon19 c.C5994A p.R1998R CTCGCTGCGGCGC . 9 5 0 0 G|0.411;T|0.589 0 0 0 0 0 TNRC18 84629 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 5401321 5401321 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TNRC18-46 NM_001080495 exon14 c.C4565T p.A1522V CTGCGTGCCAAGC . 73 18 12 0 . 0 0 0 0 0 USP42 84132 hgsc.bcm.edu 37 7 6193521 6193521 + Missense_Mutation SNP G G C rs61729726 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . USP42-659 NM_032172 exon15 c.G2336C p.R779P CGCCCCGCGATCC . 20 12 0 0 G|0.456;C|0.544 0 0 0 0 0 GRID2IP 392862 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 6554007 6554007 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001145118 exon8 c.A1422T p.T474T CTTACCTGTCATG . 27 11 46 0 . 0 0 0 0 0 GRID2IP 392862 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 6561558 6561558 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001145118 exon5 c.C950A p.S317X TCACCTGACTTGA . 104 30 95 0 . 0 0 0 0 0 THSD7A 221981 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 11419313 11419313 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . THSD7A-71 NM_015204 exon24 c.G4534A p.D1512N CGGCATCAGGCTG . 86 21 127 0 . 0 0 0 0 0 THSD7A 221981 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 11581087 11581087 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . THSD7A-71 NM_015204 exon6 c.C1781G p.P594R GTGCCTGGACCAC . 216 51 264 1 . 0 0 0 0 0 THSD7A 221981 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 11676331 11676331 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . THSD7A-71 NM_015204 exon2 c.448delG p.E150fs CTTCTTCCCCCTT . 71 13 147 0 . 0 0 0 0 0 VWDE 221806 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 12396973 12396973 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . VWDE-68 NM_001135924 exon17 c.G3443C p.W1148S GTTTTCCACATAA . 64 21 54 0 . 0 0 0 0 0 VWDE 221806 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 12409933 12409933 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . VWDE-68 NM_001135924 exon12 c.G1999A p.V667I AGGTGACATCTAG . 35 6 63 0 . 0 0 0 0 0 DGKB 1607 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 14661070 14661070 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DGKB-276 NM_145695 exon14 c.A1220T p.N407I ACTTTGTTTGGCT . 34 9 61 0 . 0 0 0 0 0 DGKB 1607 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 14775769 14775769 + Silent SNP G G T rs10238323 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DGKB-276 NM_145695 exon4 c.C219A p.A73A AAGCTCGGCTTCC . 104 22 146 0 G|0.984;A|0.016 0 0 0 0 0 HDAC9 9734 hgsc.bcm.edu;bcgsc.ca 37 7 18869083 18869083 + Splice_Site DEL G G - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HDAC9-227 NM_178423 exon19 c.2370-1G>- . TCCGCAGGGGGTT . 33 14 54 1 . 0 0 0 0 0 TMEM196 256130 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 19765212 19765212 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMEM196-22 NM_152774 exon3 c.A384T p.L128L ACTGGCTAGTCGA . 153 49 220 1 . 0 0 0 0 0 ITGB8 3696 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 20444293 20444293 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ITGB8-227 NM_002214 exon11 c.G1730C p.G577A TCAGTGGCTGGGA . 152 36 223 0 . 0 0 0 0 0 SP8 221833 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 20824578 20824578 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SP8-91 NM_182700 exon2 c.C858T p.S286S GTGCGAGGAGGCG . 30 6 32 0 . 0 0 0 0 0 DNAH11 8701 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 21789958 21789958 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DNAH11-146 . . . . CTTTATGGCCAGG . 60 11 85 0 . 0 0 0 0 0 IGF2BP3 10643 ucsc.edu;bcgsc.ca 37 7 23390952 23390952 + Silent SNP G G T rs41340451 bycluster TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IGF2BP3-92 NM_006547 exon6 c.C655A p.R219R TGTTCCGAATGGT . 105 25 140 0 G|1.000;|0.000 0 0 0 0 0 MPP6 51678 bcgsc.ca 37 7 24663284 24663284 + Splice_Site SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MPP6-90 . . . . TCAGCAGCAATGC . 30 9 44 1 . 0 0 0 0 0 DFNA5 1687 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 24789190 24789190 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DFNA5-91 NM_001127453 exon2 c.G204T p.P68P TGGACTCGGAAAT . 32 7 42 0 . 0 0 0 0 0 C7orf31 136895 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 25182373 25182373 + Missense_Mutation SNP C C G rs17150982 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C7orf31-90 NM_138811 exon8 c.G745C p.A249P TAGGAGCGAAGGT . 58 17 71 0 C|0.971;T|0.029 0 0 0 0 0 HOXA3 3200 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 27148164 27148164 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HOXA3-153 NM_030661 exon3 c.G702T p.Q234H CTTGATCTGGCGC . 93 17 134 1 . 0 0 0 0 0 EVX1 2128 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 27283071 27283071 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EVX1-91 NM_001989 exon1 c.G422A p.S141N AGCACAGCAAAGG . 72 15 78 0 . 0 0 0 0 0 CREB5 9586 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 28610012 28610012 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CREB5-92 NM_182898 exon5 c.G321T p.G107G TGGTGGGGCCATG . 203 72 290 2 . 0 0 0 0 0 NEUROD6 63974 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 31377995 31377995 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NEUROD6-92 NM_022728 exon2 c.888delC p.P296fs ACCCCTGGGTGGC . 101 22 135 0 . 0 0 0 0 0 BMPER 168667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 34006114 34006114 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BMPER-92 NM_133468 exon5 c.T343C p.Y115H AATACCTATAACA . 50 11 107 0 . 0 0 0 0 0 BMPER 168667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 34125628 34125628 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BMPER-92 NM_133468 exon14 c.C1669A p.H557N CGGGCCCATCGAG . 117 20 172 0 . 0 0 0 0 0 AOAH 313 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 36726385 36726385 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AOAH-91 NM_001637 exon2 c.G142T p.V48L CAGACACCACCAG . 137 48 151 0 . 0 0 0 0 0 ELMO1 9844 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 37298802 37298802 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ELMO1-96 NM_014800 exon6 c.G397T p.V133L TCTCCACCATCTG . 84 29 115 0 . 0 0 0 0 0 POU6F2 11281 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 39379343 39379343 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . POU6F2-90 NM_007252 exon6 c.C614A p.P205Q AGCACCCGCAACC . 23 6 12 0 . 0 0 0 0 0 MPLKIP 136647 hgsc.bcm.edu 37 7 40174042 40174042 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_138701 exon1 c.G125T p.R42L CCGTCTCGAGGGG . 62 16 10 0 . 0 0 0 0 0 INHBA 3624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 41739811 41739811 + Missense_Mutation SNP C C A rs140132631 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . INHBA-703 NM_002192 exon2 c.G162T p.M54I CTCCACCATCTCT . 42 15 87 0 C|1.000;A|0.000 0 0 0 0 0 NPC1L1 29881 bcgsc.ca 37 7 44579180 44579180 + Silent SNP G G C rs2072183 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NPC1L1-94 NM_001101648 exon2 c.C816G p.L272L GGAGTCGAGGGCC . 128 5 159 0 G|0.644;C|0.356;A|0.000 0 0 0 0 0 RAMP3 10268 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 45222995 45222995 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RAMP3-90 NM_005856 exon3 c.C431G p.T144S AACGCACCGACAC . 100 29 109 0 . 0 0 0 0 0 ADCY1 107 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 45753294 45753294 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADCY1-95 NM_021116 exon20 c.G3060T p.V1020V ACAGGTGACTGAG . 140 43 185 0 . 0 0 0 0 0 IGFBP1 3484 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 45932578 45932578 + Missense_Mutation SNP G G T rs201339143 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IGFBP1-946 NM_000596 exon4 c.G668T p.G223V TGGATGGAGAGGC . 53 15 53 0 . 0 0 0 0 0 ABCA13 154664 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 48314688 48314688 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ABCA13-521 NM_152701 exon17 c.C5425G p.P1809A GATAAGCCAGATA . 34 14 74 0 . 0 0 0 0 0 IKZF1 10320 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 50468109 50468109 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IKZF1-1242 NM_006060 exon8 c.G1344C p.A448A GGACGCGCTCCGC . 148 36 104 1 . 0 0 0 0 0 COBL 23242 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 51092894 51092894 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COBL-95 NM_015198 exon12 c.G3680T p.S1227I CCCGTGCTGAACC . 84 24 90 0 . 0 0 0 0 0 COBL 23242 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 51111286 51111286 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COBL-95 NM_015198 exon8 c.G1200T p.S400S GTCCTCCGACGCA . 79 33 108 0 . 0 0 0 0 0 POM121L12 285877 broad.mit.edu 37 7 53103415 53103415 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_182595 exon1 c.G51A p.K17K CTGGAAGGCGGGA . 113 22 67 3 . 0 0 0 0 0 POM121L12 285877 broad.mit.edu;bcgsc.ca 37 7 53103439 53103439 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_182595 exon1 c.C75A p.G25G GCAAGGCCCCGAC . 132 30 82 2 . 0 0 0 0 0 VSTM2A 222008 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 54617625 54617625 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_182546 exon4 c.C396G p.A132A TGATGCCAACTAC . 166 46 216 0 . 0 0 0 0 0 LANCL2 55915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 55479679 55479679 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LANCL2-516 NM_018697 exon6 c.G905T p.R302L AATTCCGATCTGG . 157 53 130 0 . 0 0 0 0 0 CCT6A 908 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 56128072 56128072 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CCT6A-91 NM_001762 exon10 c.G1176T p.R392S AGTGAGGGACGGC . 120 31 168 0 . 0 0 0 0 0 CALN1 83698 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 71571250 71571250 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CALN1-91 NM_031468 exon4 c.C274A p.R92R CATCCCGGTCCAG . 96 43 94 0 . 0 0 0 0 0 MDH2 4191 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 75689773 75689773 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MDH2-228 NM_005918 exon5 c.C512T p.T171I TGACGACCCTGGA . 202 69 168 0 . 0 0 0 0 0 MAGI2 9863 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 78131056 78131056 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MAGI2-461 NM_012301 exon5 c.C803A p.P268H TGGGAGGGCATCT . 107 33 85 1 . 0 0 0 0 0 MAGI2 9863 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 78131057 78131057 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MAGI2-461 NM_012301 exon5 c.C802A p.P268T GGGAGGGCATCTC . 105 32 82 0 . 0 0 0 0 0 SEMA3D 223117 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 84628911 84628911 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SEMA3D-138 NM_152754 exon17 c.C2179A p.L727I GGTCGAGGCTGAA . 221 76 216 0 . 0 0 0 0 0 SEMA3D 223117 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 84644451 84644451 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SEMA3D-138 NM_152754 exon14 c.G1627T p.D543Y AACAGTCTGCGCA . 205 81 213 0 . 0 0 0 0 0 SEMA3D 223117 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 84644491 84644491 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SEMA3D-138 NM_152754 exon14 c.C1587A p.L529L CAAGGAGAGCTGA . 197 72 206 0 . 0 0 0 0 0 GRM3 2913 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 86394645 86394645 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GRM3-528 NM_000840 exon2 c.G184A p.E62K ATCAATGAAGACC . 185 37 156 0 . 0 0 0 0 0 ABCB4 5244 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 87082308 87082308 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ABCB4-96 NM_018850 exon6 c.G488T p.G163V AACCATCCTATTT . 97 29 116 0 . 0 0 0 0 0 ABCB1 5243 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 87138732 87138732 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ABCB1-582 NM_000927 exon27 c.G3348T p.V1116V CTGGGACACGATG . 157 24 149 0 . 0 0 0 0 0 DBF4 10926 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 87526653 87526653 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DBF4-253 NM_006716 exon8 c.C679A p.Q227K ATGAGCCAGTAAG . 71 20 72 0 . 0 0 0 0 0 ZNF804B 219578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 88963902 88963902 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF804B-101 NM_181646 exon4 c.C1606T p.P536S CCGAAACCAAAGA . 117 32 141 0 . 0 0 0 0 0 ZNF804B 219578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 88966065 88966065 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF804B-101 NM_181646 exon4 c.C3769A p.P1257T ATTATCCCTGCAC . 129 50 119 0 . 0 0 0 0 0 SAMD9 54809 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 92732074 92732074 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SAMD9-140 NM_001193307 exon2 c.G3337A p.E1113K CAGGTTCTATGAT . 103 24 99 1 . 0 0 0 0 0 SAMD9L 219285 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 92763958 92763958 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SAMD9L-94 NM_152703 exon5 c.G1327T p.V443L CCAACACAGCAAA . 38 11 44 0 . 0 0 0 0 0 CALCR 799 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 93073002 93073002 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CALCR-664 NM_001164737 exon11 c.G818T p.C273F CCTTCACAGAGCA . 158 62 129 0 . 0 0 0 0 0 SHFM1 7979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 96324204 96324204 + Splice_Site SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SHFM1-227 NM_006304 exon3 c.77-1G>T . CCCAGTCTAAAAA . 48 22 51 0 . 0 0 0 0 0 BAIAP2L1 55971 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 97944819 97944819 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BAIAP2L1-91 NM_018842 exon7 c.G592T p.D198Y GCTTATCAACCAG . 116 34 99 0 . 0 0 0 0 0 ZKSCAN5 23660 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 99129205 99129205 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZKSCAN5-91 NM_145102 exon7 c.1853delC p.S618fs TGAGGTCCCACCT . 322 90 169 0 . 0 0 0 0 0 ZNF655 79027 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 99169990 99169990 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF655-91 NM_001085368 exon4 c.A364G p.R122G GAGACTAGAGAAG . 90 5 57 0 . 0 0 0 0 0 MYL10 93408 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 101259519 101259519 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYL10-136 NM_138403 exon6 c.G514T p.G172C CGAAACCTTTCCC . 173 55 157 0 . 0 0 0 0 0 CUX1 1523 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 101844740 101844740 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CUX1-160 NM_001202543 exon18 c.G2196T p.Q732H CCAGCAGGCTGCC . 260 95 167 1 . 0 0 0 0 0 SPDYE6 729597 hgsc.bcm.edu;bcgsc.ca 37 7 101991206 101991206 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPDYE6-1 NM_001146210 exon5 c.717delC p.P239fs CCAGGAGGGGAAG . 105 64 61 0 . 0 0 0 0 0 RELN 5649 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 103163855 103163855 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RELN-574 NM_173054 exon47 c.C7473G p.C2491W CTGGATGCATCTC . 139 42 144 0 . 0 0 0 0 0 RELN 5649 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 103193993 103193993 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RELN-574 NM_173054 exon40 c.T5987C p.M1996T AACACCATAGCTG . 123 36 105 1 . 0 0 0 0 0 PIK3CG 5294 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 106509035 106509035 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PIK3CG-1316 NM_002649 exon2 c.C1029A p.G343G CCACGGCAAGGAC . 289 106 245 1 . 0 0 0 0 0 SLC26A3 1811 broad.mit.edu 37 7 107408071 107408071 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC26A3-94 NM_000111 exon20 c.G2224C p.D742H TAAAATCAATTTT . 45 4 56 0 . 0 0 0 0 0 SLC26A3 1811 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 107431510 107431510 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC26A3-94 NM_000111 exon5 c.C553G p.L185V CAGAAAGCACTGT . 239 79 206 0 . 0 0 0 0 0 LAMB4 22798 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 107684339 107684339 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LAMB4-140 NM_007356 exon29 c.C4329A p.I1443I ACTTTCGATCTGG . 36 11 28 0 . 0 0 0 0 0 NRCAM 4897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 107816985 107816985 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NRCAM-156 NM_001037132 exon24 c.C3041A p.T1014N TTTAAAGTCCACC . 62 21 51 0 . 0 0 0 0 0 NRCAM 4897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 107880406 107880406 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NRCAM-156 NM_001037132 exon1 c.G103T p.D35Y TACGATCAAGAGG . 72 24 82 0 . 0 0 0 0 0 PNPLA8 50640 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 108119816 108119816 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PNPLA8-135 NM_001256008 exon9 c.G1886T p.G629V AGCAAACCTCCAT . 85 24 70 0 . 0 0 0 0 0 FOXP2 93986 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 114294061 114294061 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FOXP2-295 NM_001172767 exon10 c.A1338T p.K446N TCCCAAACCTGTA . 66 20 51 0 . 0 0 0 0 0 ASZ1 136991 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 117062373 117062373 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ASZ1-515 NM_130768 exon3 c.C246T p.P82P CATAAGGGGAGTC . 106 41 90 0 . 0 0 0 0 0 ANKRD7 56311 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 117864956 117864956 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ANKRD7-90 NM_019644 exon1 c.G72T p.K24N AGAAAAGGATTTA . 302 101 243 0 . 0 0 0 0 0 KCND2 3751 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 119914836 119914836 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KCND2-517 NM_012281 exon1 c.C150A p.T50T TGGCACCCGCTTC . 177 62 169 0 . 0 0 0 0 0 CPED1 79974 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 120770181 120770181 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001105533 exon11 c.C1410A p.L470L TCAGCTCTTCCCA . 82 25 62 0 . 0 0 0 0 0 PTPRZ1 5803 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 121624143 121624143 + Nonsense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PTPRZ1-699 NM_001206838 exon8 c.C900G p.Y300X CTCATACACTGGA . 65 21 47 0 . 0 0 0 0 0 SLC13A1 6561 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 122757584 122757584 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC13A1-92 NM_022444 exon14 c.G1591T p.V531L TTGCTACTGGTAG . 261 109 235 1 . 0 0 0 0 0 ASB15 142685 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 123270074 123270074 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ASB15-228 NM_080928 exon9 c.C1495A p.R499S GTTACTCGTGTAC . 102 30 89 0 . 0 0 0 0 0 WASL 8976 broad.mit.edu;bcgsc.ca 37 7 123329097 123329097 + Silent SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WASL-90 NM_003941 exon10 c.A1455G p.S485S TCTACCTGAAGAA . 46 4 41 0 . 0 0 0 0 0 GRM8 2918 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 126544129 126544129 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GRM8-581 NM_000845 exon4 c.G915T p.W305C GCCAATCCAGAGA . 185 84 179 2 . 0 0 0 0 0 GRM8 2918 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 126882813 126882813 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GRM8-581 NM_000845 exon1 c.G446T p.G149V ATGACGCCAGAAA . 259 109 194 1 . 0 0 0 0 0 PAX4 5078 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 127253093 127253093 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PAX4-227 NM_006193 exon6 c.G674T p.W225L ATTTCCCACTTGA . 196 68 167 0 . 0 0 0 0 0 PAX4 5078 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 127253928 127253928 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PAX4-227 NM_006193 exon4 c.G420T p.L140F TGGAGCCAAAACA . 90 22 62 0 . 0 0 0 0 0 LRRC4 64101 ucsc.edu;bcgsc.ca 37 7 127669562 127669562 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRRC4-154 NM_022143 exon2 c.C1132A p.P378T ACATAGGGGGAGT . 225 90 195 3 . 0 0 0 0 0 FAM71F2 346653 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 128315858 128315858 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001012454 exon2 c.G310T p.G104C CCCCAGGGTCCAT . 56 26 47 0 . 0 0 0 0 0 SMO 6608 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 128845593 128845593 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SMO-2451 NM_005631 exon4 c.C890T p.A297V GCCGTGCAGATGG . 85 33 37 0 . 0 0 0 0 0 SMO 6608 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 128846172 128846172 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SMO-2451 NM_005631 exon5 c.C1102G p.P368A TCACTCCCCTTTG . 202 79 166 0 . 0 0 0 0 0 PLXNA4 91584 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 131865384 131865384 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLXNA4-91 NM_020911 exon19 c.C3600A p.L1200L CTCGCAGAGCAGC . 194 76 147 0 . 0 0 0 0 0 PLXNA4 91584 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 131912280 131912280 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLXNA4-91 NM_020911 exon7 c.G1812C p.L604L CACGACCAGCCCA . 244 86 213 0 . 0 0 0 0 0 CNOT4 4850 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 135082955 135082955 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CNOT4-90 NM_001190850 exon8 c.C845G p.S282C CTGAGAGAATCTG . 62 24 41 0 . 0 0 0 0 0 PTN 5764 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 7 136912824 136912824 + Splice_Site SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PTN-516 NM_002825 exon6 c.452-2A>T . TTCTGCTGTGATT . 17 7 10 0 . 0 0 0 0 0 SVOPL 136306 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 138363243 138363243 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SVOPL-68 NM_001139456 exon2 c.C110T p.A37V TCCACTGCATCTT . 99 36 81 0 . 0 0 0 0 0 JHDM1D 80853 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 139791751 139791751 + Missense_Mutation SNP A A C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . JHDM1D-91 NM_030647 exon19 c.T2584G p.S862A GGTTTGAATTCTG . 219 73 176 0 . 0 0 0 0 0 JHDM1D 80853 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 139810956 139810956 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . JHDM1D-91 NM_030647 exon11 c.C1367T p.P456L TTGTCTGGAATTT . 67 10 35 0 . 0 0 0 0 0 DENND2A 27147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 140246647 140246647 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DENND2A-138 NM_015689 exon11 c.G2130T p.L710L TTTGCCCAGGGCT . 285 77 193 0 . 0 0 0 0 0 TAS2R3 50831 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 141464522 141464522 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TAS2R3-90 NM_016943 exon1 c.G564T p.W188C TCTGTGGTACCTG . 325 88 169 0 . 0 0 0 0 0 TAS2R38 5726 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 141672602 141672602 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TAS2R38-92 NM_176817 exon1 c.C888A p.I296I GATCAGGATGGCT . 234 56 143 2 . 0 0 0 0 0 MGAM 8972 hgsc.bcm.edu;bcgsc.ca 37 7 141759759 141759759 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MGAM-70 NM_004668 exon33 c.4052delG p.W1351fs TTGTCTGGGGAAA . 371 110 253 2 . 0 0 0 0 0 MGAM 8972 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 141805635 141805635 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MGAM-70 NM_004668 exon48 c.G5518A p.D1840N GTGACTGACAGAA . 153 30 94 0 . 0 0 0 0 0 PRSS58 136541 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 141955029 141955029 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRSS58-24 NM_001001317 exon4 c.A282T p.S94S AGTGACTGAGAAG . 234 59 122 0 . 0 0 0 0 0 TRPV5 56302 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 142606676 142606676 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRPV5-177 NM_019841 exon14 c.G1875T p.L625L GTCCCCCAGCCCG . 126 38 104 0 . 0 0 0 0 0 KEL 3792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 142638380 142638380 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KEL-93 NM_000420 exon19 c.G2158T p.G720C GAGCACCACGTGC . 156 51 114 0 . 0 0 0 0 0 KEL 3792 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 142640676 142640676 + Missense_Mutation SNP C C A rs150678405 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KEL-93 NM_000420 exon15 c.G1600T p.V534L GGGACACCTTCCA . 184 53 125 1 C|1.000;T|0.000 0 0 0 0 0 OR9A2 135924 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 142723927 142723927 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR9A2-69 NM_001001658 exon1 c.C293A p.S98X TTGAGCGATACAT . 392 95 250 0 . 0 0 0 0 0 OR6V1 346517 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 142749491 142749491 + Silent SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR6V1-23 NM_001001667 exon1 c.T54C p.F18F CTCCTTTGGTGAG . 173 21 135 0 . 0 0 0 0 0 OR6V1 346517 broad.mit.edu 37 7 142750347 142750347 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR6V1-23 NM_001001667 exon1 c.C910A p.Q304K CAGATGCAGAGGC . 48 9 15 0 . 0 0 0 0 0 PIP 5304 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 142836633 142836633 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PIP-91 NM_002652 exon4 c.C339A p.V113V AGCCGTCGTTGAT . 162 36 108 0 . 0 0 0 0 0 FAM115C 285966 broad.mit.edu 37 7 143421822 143421822 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM115C-68 NM_173678 exon7 c.G2537T p.X846L GGGGATGACCAGA . 163 29 128 0 . 0 0 0 0 0 OR2F1 26211 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 143657461 143657461 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2F1-71 NM_012369 exon1 c.C398A p.S133X GATACTCGGCCAT . 429 226 273 0 . 0 0 0 0 0 OR2F1 26211 ucsc.edu;bcgsc.ca 37 7 143657503 143657503 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2F1-71 NM_012369 exon1 c.C440A p.T147K CCATCACATCCTG . 508 131 335 2 . 0 0 0 0 0 OR2A14 135941 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 143826651 143826651 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR2A14-90 NM_001001659 exon1 c.T446A p.V149E CCTGGGTGTTCAG . 232 64 150 0 . 0 0 0 0 0 NOBOX 135935 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 144098647 144098647 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NOBOX-69 NM_001080413 exon4 c.G336A p.E112E TTCCTCCTCCCCG . 32 8 20 0 . 0 0 0 0 0 CNTNAP2 26047 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 145813997 145813997 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CNTNAP2-100 NM_014141 exon1 c.G29C p.G10A GCTGCGGGGCAGC . 71 26 27 0 . 0 0 0 0 0 CNTNAP2 26047 bcgsc.ca 37 7 147844680 147844680 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CNTNAP2-100 NM_014141 exon17 c.G2652T p.R884R GCACCGGGTCACT . 196 66 136 3 . 0 0 0 0 0 ZNF467 168544 hgsc.bcm.edu 37 7 149463036 149463036 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF467-90 NM_207336 exon5 c.G555A p.E185E GGGGCCCTCGCCC . 20 10 2 0 . 0 0 0 0 0 ZNF467 168544 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 149466284 149466284 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF467-90 NM_207336 exon4 c.G157T p.E53X GGGCCTCGTGCCC . 101 36 71 0 . 0 0 0 0 0 SSPO 23145 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 149486861 149486861 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_198455 exon31 c.C4635A p.S1545S CCCCTCCCCAGGC . 148 47 116 1 . 0 0 0 0 0 SSPO 23145 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 149518741 149518741 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_198455 exon89 c.C12735A p.C4245X GATCTGCGAAGAT . 155 49 133 3 . 0 0 0 0 0 SLC4A2 6522 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 150771826 150771826 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC4A2-90 NM_003040 exon19 c.C2945T p.P982L TCAACCCCCTGGG . 148 51 131 0 . 0 0 0 0 0 PRKAG2 51422 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 151478357 151478357 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRKAG2-658 NM_016203 exon3 c.G347C p.R116P GGGGAGCGTGGCG . 63 22 55 0 . 0 0 0 0 0 MLL3 58508 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 151947965 151947965 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MLL3-1398 NM_170606 exon12 c.G1708T p.E570X TGGACTCCTGACC . 57 26 50 0 . 0 0 0 0 0 DPP6 1804 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 153584820 153584820 + Splice_Site SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DPP6-652 NM_001039350 exon1 c.51+1G>T . GTGATGGTGAGTG . 144 19 111 0 . 0 0 0 0 0 DPP6 1804 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 7 153749961 153749961 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DPP6-652 NM_130797 exon1 c.C56A p.P19H CCTTCCCCGCGCC . 23 11 16 0 . 0 0 0 0 0 DPP6 1804 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 154561206 154561206 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DPP6-652 NM_130797 exon9 c.C963T p.S321S TGATTCCCGTGTC . 170 66 91 0 . 0 0 0 0 0 DPP6 1804 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 154598776 154598776 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DPP6-652 NM_130797 exon16 c.C1620A p.S540R CTTCAGCGCTTCC . 95 29 76 1 . 0 0 0 0 0 NOM1 64434 hgsc.bcm.edu 37 7 156742501 156742501 + Missense_Mutation SNP C C G rs6969990 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NOM1-90 NM_138400 exon1 c.C70G p.R24G ATGAAGCGCAGAG . 21 12 0 0 C|0.663;G|0.337 0 0 0 0 0 NOM1 64434 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 156743069 156743069 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NOM1-90 NM_138400 exon1 c.G638T p.R213L TTGCACGCGACGG . 157 66 141 1 . 0 0 0 0 0 DLGAP2 9228 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 1497807 1497807 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DLGAP2-22 NM_004745 exon2 c.C948A p.H316Q GCTGCACCAGGAC . 154 90 89 2 . 0 0 0 0 0 DLGAP2 9228 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 1626470 1626470 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DLGAP2-22 NM_004745 exon9 c.G2139T p.E713D CACGGAGGACAAA . 192 31 161 1 . 0 0 0 0 0 MYOM2 9172 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 2054093 2054093 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYOM2-95 NM_003970 exon22 c.C2796A p.C932X CGACTGCCAGGAA . 167 38 237 1 . 0 0 0 0 0 MYOM2 9172 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 2090321 2090321 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYOM2-95 NM_003970 exon35 c.G4023T p.K1341N AGAGAAGAGTAAG . 117 31 136 0 . 0 0 0 0 0 CSMD1 64478 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 2800005 2800005 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CSMD1-86 NM_033225 exon69 c.C10524A p.L3508L TTTGTAGAGGTAA . 32 8 69 0 . 0 0 0 0 0 CSMD1 64478 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 2855623 2855623 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CSMD1-86 NM_033225 exon54 c.A8287T p.T2763S TGCAGGTGAAATT . 165 44 219 2 . 0 0 0 0 0 CSMD1 64478 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 2910065 2910065 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CSMD1-86 NM_033225 exon50 c.C7579A p.L2527I ATTCAAGCTTGAA . 117 24 160 0 . 0 0 0 0 0 CSMD1 64478 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 3216806 3216806 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CSMD1-86 NM_033225 exon21 c.G3172C p.G1058R GAAAACCAATTCT . 85 11 129 1 . 0 0 0 0 0 AGPAT5 55326 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 6599206 6599206 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AGPAT5-90 NM_018361 exon5 c.G520A p.G174S CCAGAAGGTACAA . 55 21 76 0 . 0 0 0 0 0 TNKS 8658 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 9620743 9620743 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TNKS-660 NM_003747 exon22 c.G3361T p.V1121L CAGTCAGTGGAAG . 47 24 25 0 . 0 0 0 0 0 PRSS55 203074 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 10389053 10389053 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRSS55-91 NM_001197020 exon3 c.C596G p.A199G CCAATGCTGGTAT . 62 30 62 0 . 0 0 0 0 0 RP1L1 94137 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 10467199 10467199 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RP1L1-139 NM_178857 exon4 c.4409delG p.G1470fs TGGGAGCCACTCT . 60 19 30 0 . 0 0 0 0 0 GATA4 2626 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 11607705 11607705 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GATA4-90 NM_002052 exon4 c.C869A p.P290H GCGAGCCTGTGTG . 78 9 46 0 . 0 0 0 0 0 USP17L2 377630 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 11996101 11996101 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . USP17L2-435 NM_201402 exon1 c.C169A p.P57T CCACAGGAGCCAA . 66 12 65 2 . 0 0 0 0 0 KIAA1456 57604 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 12878570 12878570 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIAA1456-90 NM_020844 exon5 c.G382A p.A128T GAAATGGCCAGGG . 136 22 111 1 . 0 0 0 0 0 PCM1 5108 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 17796410 17796410 + Silent SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCM1-742 NM_006197 exon5 c.A504T p.S168S TGGATCAGCACAG . 115 33 160 0 . 0 0 0 0 0 NAT2 10 broad.mit.edu;bcgsc.ca 37 8 18257900 18257900 + Silent SNP C C A rs144828000 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NAT2-516 NM_000015 exon2 c.C387A p.S129S CTCCTCCCAGATG . 47 10 61 0 C|1.000;T|0.000 0 0 0 0 0 NAT2 10 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 18258377 18258377 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NAT2-516 NM_000015 exon2 c.T864A p.L288L ATCCCTTACTATT . 30 8 33 0 . 0 0 0 0 0 DOK2 9046 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 21769421 21769421 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DOK2-226 NM_003974 exon3 c.G424A p.A142T TGACTGCGCTGCT . 39 9 51 0 . 0 0 0 0 0 XPO7 23039 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 21842176 21842176 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . XPO7-273 NM_015024 exon12 c.C1297G p.L433V GATCCCCTGGAGG . 41 14 47 0 . 0 0 0 0 0 PIWIL2 55124 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 22147806 22147806 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PIWIL2-91 NM_001135721 exon10 c.G1128T p.L376L CTTCCTGCTAGCT . 121 40 117 0 . 0 0 0 0 0 LOXL2 4017 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 23179795 23179795 + Splice_Site SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LOXL2-272 NM_002318 exon8 c.1151-1G>A . CGATCCCTGCAAG . 111 33 115 0 . 0 0 0 0 0 NKX3-1 4824 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 23538992 23538992 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NKX3-1-90 NM_006167 exon2 c.G447T p.L149L GGCCGACAGGTAC . 64 21 81 0 . 0 0 0 0 0 NKX2-6 137814 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 23560030 23560030 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NKX2-6-68 NM_001136271 exon2 c.C840A p.H280Q GCCACCGTGTCCG . 68 19 16 0 . 0 0 0 0 0 NEFL 4747 hgsc.bcm.edu 37 8 24813479 24813479 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NEFL-24 NM_006158 exon1 c.G551T p.S184I TCGCGGCTCAGCA . 40 12 6 0 . 0 0 0 0 0 DOCK5 80005 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 25101270 25101270 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DOCK5-71 NM_024940 exon2 c.G124T p.E42X ATGTACGAGGGTA . 55 18 41 0 . 0 0 0 0 0 SCARA3 51435 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 27516983 27516983 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SCARA3-228 NM_182826 exon5 c.C1296T p.S432S CCTCTCCATGATC . 93 17 107 0 . 0 0 0 0 0 ESCO2 157570 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 27646479 27646479 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ESCO2-90 NM_001017420 exon7 c.A1247T p.E416V TTCTGGAAGGAAT . 59 17 83 0 . 0 0 0 0 0 SCARA5 286133 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 27779158 27779158 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SCARA5-91 NM_173833 exon4 c.G846T p.A282A GGTGACCGCGTTG . 213 61 127 1 . 0 0 0 0 0 NUGGC 389643 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 27898604 27898604 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001010906 exon13 c.G1575T p.R525S AGAAGTCCTGGCG . 68 23 100 0 . 0 0 0 0 0 PURG 29942 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 30889911 30889911 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PURG-131 NM_013357 exon1 c.G388T p.G130C TCAGGCCCAGGTG . 39 16 101 0 . 0 0 0 0 0 PPAPDC1B 84513 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 38123741 38123741 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_032483 exon6 c.G552T p.R184S ACAGAACCTCCAA . 333 58 403 0 . 0 0 0 0 0 ADAM9 8754 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 38880770 38880770 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADAM9-227 NM_003816 exon9 c.G840T p.V280V TGATGTGCTGGGG . 184 81 130 0 . 0 0 0 0 0 KAT6A 7994 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 41790513 41790513 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001099412 exon18 c.G5225A p.G1742D TAGCTGCCGGCAC . 92 37 126 0 . 0 0 0 0 0 PXDNL 137902 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 52233364 52233364 + Missense_Mutation SNP A A C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PXDNL-70 NM_144651 exon22 c.T4240G p.C1414G GAGTGCAGTCTTC . 104 52 69 0 . 0 0 0 0 0 PXDNL 137902 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 52284587 52284587 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PXDNL-70 NM_144651 exon19 c.G3747T p.K1249N CGCCTGCTTCAGC . 124 63 98 1 . 0 0 0 0 0 RP1 6101 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 55537620 55537620 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RP1-102 NM_006269 exon4 c.C1178A p.P393H TGTCACCTATGGA . 216 62 198 2 . 0 0 0 0 0 XKR4 114786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 56435991 56435991 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . XKR4-92 NM_052898 exon3 c.G1158T p.R386S CGCCAGGGTCATC . 270 115 186 0 . 0 0 0 0 0 TOX 9760 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 59750748 59750748 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TOX-227 NM_014729 exon5 c.T816A p.F272L ATCACGAAAGAAT . 164 73 136 0 . 0 0 0 0 0 CHD7 55636 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 61654436 61654436 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CHD7-141 NM_017780 exon2 c.G445T p.A149S CCCAGGGCTGTTC . 231 116 129 0 . 0 0 0 0 0 CHD7 55636 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 61765660 61765660 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CHD7-141 NM_017780 exon31 c.G6376C p.D2126H TTCTTGGATGCAC . 249 110 181 0 . 0 0 0 0 0 YTHDF3 253943 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 64099049 64099049 + Missense_Mutation SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . . . . . ACCTAGTTCTCTT . 262 84 185 0 . 0 0 0 0 0 VCPIP1 80124 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 67576973 67576973 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . VCPIP1-662 NM_025054 exon1 c.G2221T p.G741W GTTGCCCTTTTTG . 179 38 131 1 . 0 0 0 0 0 PPP1R42 286187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 67926709 67926709 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001013626 exon3 c.G248C p.C83S GAAATACAATTGT . 81 25 53 0 . 0 0 0 0 0 PREX2 80243 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 69069640 69069640 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PREX2-390 NM_024870 exon35 c.G4315T p.E1439X TCACTGGAAAAGG . 295 94 208 0 . 0 0 0 0 0 PRDM14 63978 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 70981760 70981760 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRDM14-93 NM_024504 exon2 c.G336T p.P112P GAAGGGCGGCACT . 98 27 70 1 . 0 0 0 0 0 NCOA2 10499 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 71036168 71036168 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NCOA2-639 NM_006540 exon21 c.C4244T p.S1415L GTCACTGAGGTCA . 323 43 206 2 . 0 0 0 0 0 KCNB2 9312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 73480116 73480116 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KCNB2-158 NM_004770 exon2 c.G147T p.L49L AGTCCTGTGGAGA . 199 59 168 0 . 0 0 0 0 0 KCNB2 9312 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 73849028 73849028 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KCNB2-158 NM_004770 exon3 c.G1438T p.D480Y ACAAAGGACTCCG . 115 32 86 2 . 0 0 0 0 0 ZFHX4 79776 ucsc.edu;bcgsc.ca 37 8 77617610 77617610 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZFHX4-98 NM_024721 exon2 c.G1287T p.S429S CTCATCGTCTGAG . 163 36 142 2 . 0 0 0 0 0 ZFHX4 79776 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 77618388 77618388 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZFHX4-98 NM_024721 exon2 c.G2065T p.G689C GCCCGGGGTGAGA . 119 73 119 0 . 0 0 0 0 0 ZFHX4 79776 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 77620165 77620165 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZFHX4-98 NM_024721 exon3 c.2975delC p.A992fs GTATTGCCATTGG . 290 69 193 0 . 0 0 0 0 0 ZFHX4 79776 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 77763363 77763363 + Silent SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZFHX4-98 NM_024721 exon10 c.T4206C p.C1402C CCATTGTAGCTTG . 141 43 159 1 . 0 0 0 0 0 ZFHX4 79776 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 77763737 77763737 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZFHX4-98 NM_024721 exon10 c.C4580A p.P1527H AAGGGCCCAATTT . 247 78 172 1 . 0 0 0 0 0 ZFHX4 79776 broad.mit.edu;bcgsc.ca 37 8 77764446 77764446 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZFHX4-98 NM_024721 exon10 c.G5289T p.G1763G ATTTGGGATGCCT . 65 33 62 1 . 0 0 0 0 0 ZFHX4 79776 ucsc.edu;bcgsc.ca 37 8 77766416 77766416 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZFHX4-98 NM_024721 exon10 c.C7259A p.P2420H CCTCTCCCCCTTC . 227 104 172 2 . 0 0 0 0 0 ZFHX4 79776 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 77776722 77776722 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZFHX4-98 NM_024721 exon11 c.C10772G p.S3591C ATAATTCTTTGGA . 262 38 178 0 . 0 0 0 0 0 ZBTB10 65986 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 81412557 81412557 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZBTB10-522 NM_023929 exon2 c.G1801T p.V601L TGCTCAGTAATGC . 143 72 131 0 . 0 0 0 0 0 PMP2 5375 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 82359617 82359617 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PMP2-90 NM_002677 exon1 c.G5A p.S2N TTGTTGCTCATCG . 122 37 110 0 . 0 0 0 0 0 CA13 377677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 86162997 86162997 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CA13-90 NM_198584 exon2 c.T66A p.P22P TTTCCCTATTGCT . 234 104 183 0 . 0 0 0 0 0 PSKH2 85481 bcgsc.ca 37 8 87076709 87076709 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PSKH2-385 NM_033126 exon2 c.C337A p.R113R CCCGCCGCAGGAC . 152 63 103 3 . 0 0 0 0 0 ATP6V0D2 245972 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 87162446 87162446 + Missense_Mutation SNP C C A rs187338795 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ATP6V0D2-90 NM_152565 exon6 c.C745A p.P249T CTCTATCCTGAGG . 202 69 106 1 C|0.999;T|0.001 0 0 0 0 0 DCAF4L2 138009 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 88885067 88885067 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DCAF4L2-91 NM_152418 exon1 c.C1133A p.A378E CCTGGTGCTCCTC . 91 32 68 0 . 0 0 0 0 0 TMEM55A 55529 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 92008967 92008967 + Nonsense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMEM55A-90 NM_018710 exon6 c.C545G p.S182X CCCACTGAGGAGC . 216 97 161 0 . 0 0 0 0 0 LRRC69 100130742 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 92145519 92145519 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001129890 exon4 c.G565T p.G189X AACATTGGAGTTT . 62 28 49 0 . 0 0 0 0 0 RUNX1T1 862 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 92972688 92972688 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RUNX1T1-1196 NM_001198679 exon12 c.C1774A p.R592R AGTATCGGGCTGT . 86 26 72 0 . 0 0 0 0 0 RAD54B 25788 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 95403988 95403988 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RAD54B-539 NM_012415 exon10 c.C1658A p.A553E TGTAGTGCTCCTG . 137 31 106 1 . 0 0 0 0 0 MIR875 100126309 bcgsc.ca 37 8 100549080 100549080 + RNA SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . . . . . GGTATAGTACCAC . 60 9 68 0 . 0 0 0 0 0 FBXO43 286151 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 101154328 101154328 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FBXO43-226 NM_001029860 exon2 c.154delG p.D52fs GAGAGTCCGCCCC . 104 35 56 0 . 0 0 0 0 0 PABPC1 26986 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 101725319 101725319 + Missense_Mutation SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PABPC1-68 NM_002568 exon5 c.A734C p.Q245P ACTTTCTGTGCAT . 107 50 120 2 . 0 0 0 0 0 RIMS2 9699 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 104948841 104948841 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RIMS2-279 NM_001100117 exon13 c.C2438T p.T813I ACCAAACATTCAT . 106 26 80 0 . 0 0 0 0 0 RIMS2 9699 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 105263996 105263996 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RIMS2-279 NM_001100117 exon24 c.C3998A p.A1333D GAAGAGCTTCCCA . 153 49 120 0 . 0 0 0 0 0 DCSTAMP 81501 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 105361150 105361150 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001257317 exon2 c.G370T p.G124C CTAGATGGTATGA . 152 65 152 2 . 0 0 0 0 0 DPYS 1807 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 105405152 105405152 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DPYS-229 NM_001385 exon8 c.G1303A p.G435R GCACCCCGTGGCA . 107 11 98 0 . 0 0 0 0 0 LRP12 29967 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 105511738 105511738 + Missense_Mutation SNP A A C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LRP12-90 NM_013437 exon4 c.T282G p.D94E ATCAAAATCCTGA . 26 10 19 0 . 0 0 0 0 0 ZFPM2 23414 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 106814687 106814687 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZFPM2-139 NM_012082 exon8 c.G2377T p.G793X TTTCCAGGAATTG . 276 76 231 0 . 0 0 0 0 0 PKHD1L1 93035 bcgsc.ca 37 8 110457146 110457146 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PKHD1L1-145 NM_177531 exon38 c.G5048C p.G1683A GCTCTGGATTTGC . 342 147 315 4 . 0 0 0 0 0 PKHD1L1 93035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 110464351 110464351 + Splice_Site SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PKHD1L1-145 NM_177531 exon42 c.6351-2A>T . TTTTACAGTGAAA . 126 64 121 0 . 0 0 0 0 0 PKHD1L1 93035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 110502235 110502235 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PKHD1L1-145 NM_177531 exon60 c.G9935T p.R3312M GCTTCAGGGATAG . 260 71 181 0 . 0 0 0 0 0 CSMD3 114788 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 113237100 113237100 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CSMD3-1132 NM_198123 exon71 c.C11024G p.A3675G AAAGCTGCTTGGC . 264 82 258 1 . 0 0 0 0 0 CSMD3 114788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 113516042 113516042 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CSMD3-1132 NM_198123 exon30 c.C5060A p.T1687N AATCCAGTGTAAC . 106 48 78 0 . 0 0 0 0 0 CSMD3 114788 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 114111074 114111074 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CSMD3-1132 NM_052900 exon5 c.G828T p.G276G TGTGTCCCCAGGC . 188 59 139 1 . 0 0 0 0 0 CSMD3 114788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 114326847 114326847 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CSMD3-1132 NM_052900 exon2 c.C354A p.Y118X TGATAAGTAGTCG . 151 61 110 0 . 0 0 0 0 0 CSMD3 114788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 114449071 114449071 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CSMD3-1132 NM_052900 exon1 c.C13A p.R5S CTTTGCGGATCCC . 74 24 59 0 . 0 0 0 0 0 SLC30A8 169026 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 118183272 118183272 + Splice_Site SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC30A8-229 NM_001172811 exon9 c.683-1G>C . TTGTCAGGTGTGC . 172 68 128 0 . 0 0 0 0 0 MAL2 114569 hgsc.bcm.edu 37 8 120220776 120220776 + Splice_Site DEL G G - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_052886 exon1 c.64+1G>- . CGCCCCGGGGTCA . 25 22 0 0 . 0 0 0 0 0 MAL2 114569 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 120252405 120252405 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_052886 exon4 c.G304A p.D102N TTTTAGGATTTTG . 24 8 18 0 . 0 0 0 0 0 MAL2 114569 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 120252497 120252497 + Silent SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_052886 exon4 c.T396C p.N132N TTGCAATACAACC . 57 13 38 0 . 0 0 0 0 0 COL14A1 7373 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 121215990 121215990 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COL14A1-543 NM_021110 exon9 c.C920A p.S307Y TCGCCTCTGAACC . 179 62 123 2 . 0 0 0 0 0 TMEM65 157378 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 125339634 125339634 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMEM65-68 NM_194291 exon3 c.A378T p.I126I AAACCCTATGAAA . 190 51 156 0 . 0 0 0 0 0 POU5F1B 5462 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 128428179 128428179 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001159542 exon1 c.68delG p.W23fs GGCCATGGGGGGC . 61 19 46 0 . 0 0 0 0 0 POU5F1B 5462 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 8 128428183 128428183 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001159542 exon1 c.G72T p.G24G ATGGGGGGCGGAG . 60 20 49 0 . 0 0 0 0 0 POU5F1B 5462 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 128428187 128428187 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001159542 exon1 c.G76C p.E26Q GGGGCGGAGCCGG . 61 23 52 0 . 0 0 0 0 0 ADCY8 114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 131964240 131964240 + Missense_Mutation SNP C C A rs138524416 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADCY8-157 NM_001115 exon3 c.G1115T p.R372L ACGAGCCGCTCCT . 216 59 150 0 C|1.000;T|0.000 0 0 0 0 0 HHLA1 10086 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 133090001 133090001 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001145095 exon11 c.C1143A p.G381G TGGGCTGCCAGGT . 130 60 96 0 . 0 0 0 0 0 KCNQ3 3786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 133187720 133187720 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KCNQ3-138 NM_004519 exon5 c.G913T p.D305Y GGGCATCTGCATA . 227 108 166 0 . 0 0 0 0 0 SLA 6503 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 134050829 134050829 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLA-279 NM_006748 exon7 c.G891T p.M297I ACCATACATCAGG . 244 72 196 2 . 0 0 0 0 0 SLA 6503 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 134072520 134072520 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLA-279 NM_006748 exon1 c.C6G p.L2L TTTAGAGAGCATC . 173 54 124 0 . 0 0 0 0 0 TG 7038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 134145773 134145773 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TG-145 NM_003235 exon47 c.C8057A p.P2686H CCTGGCCTGACTT . 169 73 163 0 . 0 0 0 0 0 FAM135B 51059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 139158277 139158277 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM135B-31 NM_015912 exon15 c.C3465A p.L1155L CAGCCGGAGGTCT . 67 25 39 0 . 0 0 0 0 0 FAM135B 51059 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 139165292 139165292 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM135B-31 NM_015912 exon13 c.G1426T p.V476F TTATAACTTCTTC . 163 33 138 0 . 0 0 0 0 0 FAM135B 51059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 139190892 139190892 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM135B-31 NM_015912 exon10 c.G915T p.K305N CAGATCCTTGCTT . 235 58 204 0 . 0 0 0 0 0 COL22A1 169044 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 139712358 139712358 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COL22A1-103 NM_152888 exon32 c.G2589T p.M863I TACGGGCATCCGT . 136 47 103 0 . 0 0 0 0 0 COL22A1 169044 hgsc.bcm.edu 37 8 139890282 139890282 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COL22A1-103 NM_152888 exon3 c.C369T p.Y123Y CGTGATGTAGCGG . 130 15 5 0 . 0 0 0 0 0 ARC 23237 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 143694448 143694448 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARC-135 NM_015193 exon1 c.C1185A p.P395P CTACTCGGGCTGG . 143 44 47 0 . 0 0 0 0 0 ARC 23237 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 143694832 143694832 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARC-135 NM_015193 exon1 c.C801G p.F267L CTTCTTGAACTCC . 169 87 126 1 . 0 0 0 0 0 THEM6 51337 hgsc.bcm.edu 37 8 143809193 143809193 + Silent SNP C C T rs2257840 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_016647 exon1 c.C429T p.G143G GGACGGCTTCGTG . 7 7 0 0 C|0.534;T|0.466 0 0 0 0 0 ZNF696 79943 hgsc.bcm.edu 37 8 144378868 144378868 + Silent SNP A A G rs7386259 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF696-90 NM_030895 exon3 c.A1023G p.R341R CCAGCGACTCCAC . 10 8 0 0 A|0.118;G|0.882 0 0 0 0 0 TIGD5 84948 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 144681841 144681841 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TIGD5-90 NM_032862 exon1 c.G1768T p.E590X GCCGGGGAGGCCG . 166 66 70 0 . 0 0 0 0 0 FAM83H 286077 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 144811162 144811162 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM83H-92 NM_198488 exon4 c.G712C p.A238P CCACGGCACAGTC . 224 95 177 2 . 0 0 0 0 0 EPPK1 83481 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 144940543 144940543 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EPPK1-25 NM_031308 exon1 c.C6879T p.G2293G CTCGCCGCCCACC . 256 25 27 0 . 0 0 0 0 0 EPPK1 83481 hgsc.bcm.edu 37 8 144940615 144940615 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EPPK1-25 NM_031308 exon1 c.C6807T p.T2269T GAAGCCGGTGGCC . 94 12 1 0 . 0 0 0 0 0 EPPK1 83481 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 144941957 144941957 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EPPK1-25 NM_031308 exon1 c.G5465T p.G1822V AGGCCCCCACTCT . 160 57 110 0 . 0 0 0 0 0 PLEC 5339 broad.mit.edu;bcgsc.ca 37 8 144991067 144991067 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLEC-141 NM_201380 exon32 c.G13333C p.G4445R GCTGCCCCGTGAT . 208 101 51 1 . 0 0 0 0 0 PLEC 5339 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 144991254 144991254 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLEC-141 NM_201380 exon32 c.C13146T p.S4382S GGAACGGGAGCGG . 346 125 207 1 . 0 0 0 0 0 PLEC 5339 hgsc.bcm.edu 37 8 144998169 144998169 + Silent SNP C C T rs1140522 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLEC-141 NM_201380 exon31 c.G6339A p.A2113A CTCCGCCGCCAGC . 14 14 0 0 C|0.740;T|0.260 0 0 0 0 0 PLEC 5339 hgsc.bcm.edu 37 8 144998190 144998190 + Silent SNP A A G rs2857829 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLEC-141 NM_201380 exon31 c.T6318C p.A2106A CCTCGCAGCCTCC . 36 36 0 0 A|0.738;G|0.262 0 0 0 0 0 PLEC 5339 hgsc.bcm.edu 37 8 144999417 144999417 + Silent SNP C C T rs55836855 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLEC-141 NM_201380 exon31 c.G5091A p.A1697A CTGCCGCGCTCGC . 19 19 1 0 C|0.731;T|0.269 0 0 0 0 0 PLEC 5339 hgsc.bcm.edu 37 8 145001784 145001784 + Silent SNP A A G rs3135109 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLEC-141 NM_201380 exon27 c.T3961C p.L1321L CAAGCAACTGGGC . 39 39 0 0 G|0.246;A|0.754 0 0 0 0 0 OPLAH 26873 hgsc.bcm.edu 37 8 145106939 145106940 + Splice_Site DEL CC CC - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OPLAH-68 . . . . CCCGAGCCCCCCG . 11 11 1 0 . 0 0 0 0 0 GPAA1 8733 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 145140943 145140943 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPAA1-90 NM_003801 exon12 c.C1781A p.T594N ACCACACCTACGG . 98 12 66 0 . 0 0 0 0 0 MROH1 727957 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 145245734 145245734 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001099280 exon8 c.G610T p.D204Y AACCTGGACCGAG . 169 54 108 1 . 0 0 0 0 0 TONSL 4796 hgsc.bcm.edu 37 8 145661675 145661675 + Missense_Mutation SNP G G A rs7830832 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TONSL-92 NM_013432 exon17 c.C2141T p.A714V ACATGGGCCTGAG . 11 6 4 0 G|0.593;A|0.407 0 0 0 0 0 CYHR1 50626 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 145678757 145678757 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CYHR1-90 NM_138496 exon3 c.C333T p.P111P ACAATTGGGGCAC . 264 113 189 2 . 0 0 0 0 0 ZNF517 340385 hgsc.bcm.edu 37 8 146033347 146033347 + Missense_Mutation SNP T T C rs2976653 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF517-90 NM_213605 exon5 c.T1046C p.V349A GCGGCGTGGGGCA . 21 21 0 0 G|0.992;C|0.006 0 0 0 0 0 KANK1 23189 ucsc.edu;bcgsc.ca 37 9 712593 712593 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KANK1-517 NM_001256876 exon7 c.T1827A p.S609S GGAGTCTGTGAAC . 181 106 234 3 . 0 0 0 0 0 DMRT3 58524 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 990798 990798 + Missense_Mutation SNP G G T rs148970201 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DMRT3-516 NM_021240 exon2 c.G1212T p.R404S GCTGAGGTCCCAG . 98 55 130 0 G|0.999;A|0.000 0 0 0 0 0 PTPRD 5789 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 8518129 8518129 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PTPRD-912 NM_130392 exon10 c.C1262A p.P421Q TCCCTCGGGGCAC . 138 64 224 0 . 0 0 0 0 0 PTPRD 5789 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 8636699 8636699 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PTPRD-912 NM_001040712 exon2 c.G210T p.E70D TAATACCTCAAAT . 138 88 213 0 . 0 0 0 0 0 FREM1 158326 bcgsc.ca 37 9 14842322 14842322 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FREM1-138 NM_144966 exon10 c.G1730C p.G577A ATCAGTCCTGGCC . 61 27 102 3 . 0 0 0 0 0 HAUS6 54801 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 19063554 19063554 + Silent SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HAUS6-92 NM_017645 exon13 c.A1401G p.S467S TGAAACTGACTGC . 139 77 234 0 . 0 0 0 0 0 LINGO2 158038 ucsc.edu;bcgsc.ca 37 9 27949236 27949236 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LINGO2-516 NM_001258282 exon7 c.C1434A p.S478R CATCCCGCTGTCT . 62 34 108 2 . 0 0 0 0 0 TMEM8B 51754 bcgsc.ca 37 9 35842566 35842566 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMEM8B-91 NM_001042590 exon6 c.A131T p.N44I TGCGCAACGAGCT . 110 61 145 3 . 0 0 0 0 0 CCIN 881 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 36170829 36170829 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CCIN-92 NM_005893 exon1 c.G1330T p.V444L GTCGGGGTAGTGG . 156 86 198 0 . 0 0 0 0 0 SPATA31A6 389730 broad.mit.edu;mdanderson.org 37 9 43626768 43626768 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001145196 exon4 c.A1919T p.Q640L GAGGACTGCCAGG . 27 15 24 0 . 0 0 0 0 0 SPATA31A6 389730 broad.mit.edu;ucsc.edu;mdanderson.org 37 9 43627064 43627064 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001145196 exon4 c.G1623T p.W541C CAAAGGCCATTCA . 16 10 22 0 . 0 0 0 0 0 CNTNAP3B 728577 bcgsc.ca 37 9 43815873 43815873 + Silent SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001201380 exon5 c.T627C p.S209S TATTTCTTTGAAA . 430 98 389 0 . 0 0 0 0 0 CNTNAP3B 728577 bcgsc.ca 37 9 43822703 43822703 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001201380 exon8 c.C1257A p.F419L GAGTTTCGTCCTC . 494 89 440 0 . 0 0 0 0 0 SPATA31A5 727905 broad.mit.edu;bcgsc.ca 37 9 65507526 65507526 + Missense_Mutation SNP G G T rs201014618 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001113541 exon3 c.C289A p.L97M AAAGCAGGTCCGA . 1455 326 1209 2 G|0.998;C|0.002 0 0 0 0 0 KLF9 687 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 73027994 73027994 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KLF9-90 NM_001206 exon1 c.G286C p.D96H CGCTGTCGGATCC . 230 39 205 0 . 0 0 0 0 0 TMEM2 23670 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 74349872 74349872 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMEM2-92 NM_013390 exon6 c.G1243T p.G415X TCACTCCATCTAC . 76 20 55 0 . 0 0 0 0 0 GDA 9615 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 74810477 74810477 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GDA-230 NM_004293 exon2 c.C185A p.P62Q TCAAGCCGTGTGA . 48 14 35 0 . 0 0 0 0 0 RORB 6096 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 77249546 77249546 + Splice_Site DEL G G - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RORB-229 NM_006914 exon3 c.94-1G>- . CCTCAAGGGATTC . 45 15 45 0 . 0 0 0 0 0 TRPM6 140803 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 77423024 77423024 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRPM6-335 NM_017662 exon14 c.G1564T p.G522C CTCTACCAATGAG . 155 46 139 0 . 0 0 0 0 0 TRPM6 140803 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 77431651 77431651 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRPM6-335 NM_017662 exon11 c.G1242T p.L414L CATTGCCAGATTT . 50 14 45 0 . 0 0 0 0 0 PRUNE2 158471 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 79320603 79320603 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRUNE2-157 NM_015225 exon8 c.A6587T p.N2196I TCACCGTTTATTT . 155 56 141 0 . 0 0 0 0 0 TLE4 7091 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 82321726 82321726 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TLE4-524 NM_007005 exon11 c.G848T p.R283L AGACACGCCTGCT . 90 30 108 0 . 0 0 0 0 0 SPATA31D1 389763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 84607383 84607383 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001001670 exon4 c.C1998A p.V666V CAAGGTCCATGTT . 227 78 201 0 . 0 0 0 0 0 SPATA31D1 389763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 84607770 84607770 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001001670 exon4 c.G2385T p.K795N AGACAAGGATCTG . 571 178 505 0 . 0 0 0 0 0 SPATA31D1 389763 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 84608003 84608003 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001001670 exon4 c.A2618T p.H873L TTAAACATCGAAA . 553 150 541 2 . 0 0 0 0 0 SPATA31D1 389763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 84608098 84608098 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001001670 exon4 c.G2713T p.A905S TTGGAAGCCCATA . 160 65 172 0 . 0 0 0 0 0 AGTPBP1 23287 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 88162051 88162051 + Silent SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AGTPBP1-158 NM_015239 exon26 c.T3534A p.S1178S TAATTCAGAGTCA . 130 45 141 0 . 0 0 0 0 0 DAPK1 1612 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 90318057 90318057 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DAPK1-359 NM_004938 exon25 c.G2985T p.V995V CGACGTGCAGGAC . 192 69 171 0 . 0 0 0 0 0 SYK 6850 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 93637019 93637019 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SYK-1402 NM_003177 exon9 c.G1069C p.E357Q CCCGAGGAGATCA . 108 52 128 0 . 0 0 0 0 0 NOL8 55035 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 95076909 95076909 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NOL8-23 NM_017948 exon7 c.G1998C p.K666N ACTTCTCTTTTCA . 166 47 142 2 . 0 0 0 0 0 NOL8 55035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 95077071 95077071 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NOL8-23 NM_017948 exon7 c.C1836T p.S612S TTCCATGGATATG . 52 25 59 0 . 0 0 0 0 0 ECM2 1842 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 95263198 95263198 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ECM2-131 NM_001393 exon9 c.C1742A p.P581Q AGGCCTGGTTCCA . 215 58 231 0 . 0 0 0 0 0 ECM2 1842 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 95263199 95263199 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ECM2-131 NM_001393 exon9 c.C1741A p.P581T GGCCTGGTTCCAT . 219 60 227 1 . 0 0 0 0 0 FAM22G 441457 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 99694487 99694487 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM22G-69 NM_001045477 exon2 c.500delC p.A167fs AGGTGGCCCCCAT . 713 165 392 0 . 0 0 0 0 0 CCDC180 0 broad.mit.edu;bcgsc.ca 37 9 100122323 100122323 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_020893 exon26 c.G3555T p.Q1185H GAGCCAGAGGATT . 258 90 220 1 . 0 0 0 0 0 HEMGN 55363 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 100693484 100693484 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HEMGN-91 NM_197978 exon3 c.C193A p.Q65K TCTGCTGCTTGCG . 27 6 18 0 . 0 0 0 0 0 COL15A1 1306 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 101749611 101749611 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COL15A1-96 NM_001855 exon4 c.C684A p.P228P CGACCCCAGGACT . 80 30 62 0 . 0 0 0 0 0 COL15A1 1306 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 101765834 101765834 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COL15A1-96 NM_001855 exon8 c.A1165G p.M389V CTCTCTATGTCCA . 266 91 260 1 . 0 0 0 0 0 GRIN3A 116443 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 104390541 104390541 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GRIN3A-96 NM_133445 exon4 c.T2495A p.L832Q CACTTCAGATACT . 42 4 39 0 . 0 0 0 0 0 GRIN3A 116443 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 104432880 104432880 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GRIN3A-96 NM_133445 exon3 c.A1814T p.Y605F GCTCCATACTTTC . 108 33 138 0 . 0 0 0 0 0 GRIN3A 116443 broad.mit.edu;mdanderson.org 37 9 104499917 104499917 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GRIN3A-96 NM_133445 exon1 c.G345T p.E115D GGCGCCCTCCCCG . 47 15 29 0 . 0 0 0 0 0 OR13C8 138802 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 107331611 107331611 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR13C8-70 NM_001004483 exon1 c.C163A p.L55M TCTCACCTGCACA . 96 30 97 0 . 0 0 0 0 0 ZNF462 58499 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 109746465 109746465 + Splice_Site SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF462-95 NM_021224 exon10 c.6833-2A>T . TTCCACAGAAGAG . 99 33 71 1 . 0 0 0 0 0 SVEP1 79987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 113169869 113169869 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SVEP1-75 NM_153366 exon38 c.C8011A p.H2671N ATGAATGTGTAGC . 116 35 96 0 . 0 0 0 0 0 SVEP1 79987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 113265477 113265477 + Missense_Mutation SNP G G T rs200840190 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SVEP1-75 NM_153366 exon6 c.C1324A p.R442S GCTGGCGGAGATG . 251 85 209 0 G|0.999;A|0.001 0 0 0 0 0 MUSK 4593 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 113547978 113547978 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MUSK-1379 NM_005592 exon12 c.T1758A p.F586L AGCGTTTGGAAGG . 141 68 110 0 . 0 0 0 0 0 FKBP15 23307 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 115969505 115969505 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FKBP15-25 NM_015258 exon3 c.C241T p.H81Y ATGCATGGACTGC . 191 83 136 0 . 0 0 0 0 0 ALAD 210 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 116151361 116151361 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ALAD-90 NM_000031 exon11 c.A827T p.Y276F ACGTGGTACACGG . 257 102 231 2 . 0 0 0 0 0 C9orf43 257169 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 116176080 116176080 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C9orf43-90 NM_152786 exon3 c.G193A p.G65S GATTCCGGCTTTG . 95 33 113 2 . 0 0 0 0 0 COL27A1 85301 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 117070019 117070019 + Silent SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COL27A1-94 NM_032888 exon59 c.T5178C p.H1726H CACTCATGGTGGA . 259 85 191 1 . 0 0 0 0 0 AKNA 80709 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 117143414 117143414 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AKNA-94 NM_030767 exon2 c.C200T p.P67L AGGGGCGGCAGGT . 114 51 64 0 . 0 0 0 0 0 PAPPA 5069 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 118949703 118949703 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PAPPA-77 NM_002581 exon2 c.G686C p.S229T TATTCAGCCCACT . 93 12 86 0 . 0 0 0 0 0 PAPPA 5069 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 118997834 118997834 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PAPPA-77 NM_002581 exon7 c.C2650G p.L884V AAGCCCCTGAAGT . 142 43 137 1 . 0 0 0 0 0 PAPPA 5069 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 119097159 119097159 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PAPPA-77 NM_002581 exon13 c.C3417A p.C1139X GAGCTGCAGGAAC . 129 27 106 0 . 0 0 0 0 0 ASTN2 23245 ucsc.edu;bcgsc.ca 37 9 120053671 120053671 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ASTN2-161 NM_014010 exon2 c.C564G p.A188A AGTGGGGGCGGTG . 259 94 224 3 . 0 0 0 0 0 TLR4 7099 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 120475502 120475502 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TLR4-577 NM_138554 exon3 c.G1096C p.A366P GGGAATGCTTTTT . 128 35 137 0 . 0 0 0 0 0 CNTRL 11064 broad.mit.edu;bcgsc.ca 37 9 123888004 123888004 + Silent SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CNTRL-661 NM_007018 exon12 c.A1815G p.A605A GATAGCAGCAAAT . 100 31 70 2 . 0 0 0 0 0 MORN5 254956 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 124936842 124936842 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MORN5-90 NM_198469 exon4 c.C375A p.D125E TGGAGACGGCTTC . 106 46 124 0 . 0 0 0 0 0 LHX6 26468 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 124971944 124971944 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LHX6-90 NM_014368 exon9 c.C1107A p.P369P GTGGACGGGGGGT . 201 91 159 0 . 0 0 0 0 0 PTGS1 5742 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 125154577 125154577 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PTGS1-228 NM_000962 exon11 c.G1554T p.G518G CTTTGGGGAGAGT . 178 67 129 0 . 0 0 0 0 0 OR1K1 392392 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 125562551 125562551 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR1K1-69 NM_080859 exon1 c.C150A p.I50I TGCCATCCAGGCC . 255 102 161 0 . 0 0 0 0 0 ZBTB26 57684 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 125681181 125681181 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZBTB26-90 NM_020924 exon2 c.C1033T p.L345F GGTTAAGATGATC . 76 24 95 0 . 0 0 0 0 0 CRB2 286204 hgsc.bcm.edu 37 9 126136139 126136139 + Missense_Mutation SNP C C T rs73571431 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CRB2-91 NM_173689 exon10 c.C3329T p.T1110M GTCACACGCACCC . 8 7 0 0 C|0.875;T|0.125 0 0 0 0 0 OLFML2A 169611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 127549290 127549290 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OLFML2A-68 NM_182487 exon2 c.G127T p.E43X ACCTCGGAGGGCT . 48 18 28 0 . 0 0 0 0 0 GOLGA1 2800 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 127670717 127670717 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GOLGA1-91 NM_002077 exon12 c.G1004A p.R335K TGTTGTCTGGTAT . 96 34 78 0 . 0 0 0 0 0 SH2D3C 10044 broad.mit.edu;bcgsc.ca 37 9 130501188 130501188 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SH2D3C-228 NM_170600 exon12 c.G2420T p.R807L TCCGGCCGGGCCT . 122 49 100 2 . 0 0 0 0 0 SPTAN1 6709 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 131395498 131395498 + Missense_Mutation SNP G G A rs141980692 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPTAN1-158 NM_001130438 exon57 c.G7319A p.R2440Q TGACCCGGGAACA . 97 21 77 0 G|0.999;A|0.001 0 0 0 0 0 ZER1 10444 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 131513410 131513410 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZER1-91 NM_006336 exon7 c.G1176T p.R392R CAGGGCCCGCAGC . 150 50 85 0 . 0 0 0 0 0 ASS1 445 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 133342123 133342123 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ASS1-91 NM_054012 exon6 c.C432T p.P144P TGCTCCCTGGAGG . 130 44 100 0 . 0 0 0 0 0 SETX 23064 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 135140278 135140278 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SETX-93 NM_015046 exon26 c.A7382T p.K2461M AGAATCTTCACTG . 124 57 103 0 . 0 0 0 0 0 SETX 23064 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 135210060 135210060 + Missense_Mutation SNP A A C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SETX-93 NM_015046 exon7 c.T773G p.L258W GAGCCCAACAACA . 154 25 129 0 . 0 0 0 0 0 DDX31 64794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 135505693 135505693 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DDX31-226 NM_022779 exon16 c.C1904T p.S635L GCCTCCGAAGGAG . 84 14 74 0 . 0 0 0 0 0 GTF3C4 9329 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 135554353 135554353 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GTF3C4-91 NM_012204 exon2 c.G1347T p.Q449H GAGGCAGCTGATT . 216 77 165 1 . 0 0 0 0 0 TSC1 7248 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 135781060 135781060 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TSC1-1906 NM_000368 exon15 c.A1905T p.T635T TTCCTCTGTGTTT . 209 69 170 1 . 0 0 0 0 0 GBGT1 26301 bcgsc.ca 37 9 136029495 136029495 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GBGT1-90 NM_021996 exon7 c.G513T p.Q171H GTGACCCTGGATG . 124 41 95 2 . 0 0 0 0 0 ADAMTS13 11093 hgsc.bcm.edu;bcgsc.ca 37 9 136324173 136324173 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADAMTS13-229 NM_139025 exon29 c.4155delG p.Q1385fs CAGCCAGGCTGAG . 226 81 174 1 . 0 0 0 0 0 COL5A1 1289 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 137658845 137658845 + Splice_Site SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COL5A1-524 NM_000093 exon23 c.2134-1G>T . CCTGTAGGGTCCC . 161 54 130 0 . 0 0 0 0 0 SOHLH1 402381 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 138585537 138585537 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SOHLH1-135 NM_001101677 exon8 c.G1070A p.S357N AGAGGGCTGTCCT . 250 83 195 0 . 0 0 0 0 0 KCNT1 57582 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 138660771 138660771 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KCNT1-137 NM_020822 exon15 c.G1498T p.V500F TTTCACGTCAAGT . 65 15 43 0 . 0 0 0 0 0 SEC16A 9919 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 139341310 139341310 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_014866 exon28 c.C6789T p.P2263P CACCTTGGGCTCT . 80 33 73 1 . 0 0 0 0 0 NOTCH1 4851 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 139391450 139391450 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NOTCH1-5459 NM_017617 exon34 c.G6741C p.L2247L CACGTTCAGGTGC . 171 44 14 0 . 0 0 0 0 0 LCN6 158062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 139639178 139639178 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LCN6-90 NM_198946 exon5 c.C428G p.A143G TGGCTGGCTGTCT . 134 53 120 0 . 0 0 0 0 0 SLC34A3 142680 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 140126591 140126591 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC34A3-90 NM_001177317 exon3 c.G153T p.K51N GCTGAAGGACACA . 165 64 143 0 . 0 0 0 0 0 NOXA1 10811 hgsc.bcm.edu 37 9 140317999 140317999 + Missense_Mutation SNP C C G rs112864733 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NOXA1-90 NM_006647 exon1 c.C18G p.D6E GGGGGACCTGGTG . 17 11 0 0 C|0.934;G|0.066 0 0 0 0 0 EHMT1 79813 broad.mit.edu;bcgsc.ca 37 9 140671292 140671292 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EHMT1-154 NM_001145527 exon12 c.G2014T p.G672C ACAACGGGCAGGT . 98 34 79 2 . 0 0 0 0 0 PPP2R3B 28227 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 322316 322316 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PPP2R3B-136 NM_013239 exon2 c.C334T p.R112W CTTTCCGTGTCTG . 278 154 312 1 . 0 0 0 0 0 ASMTL 8623 hgsc.bcm.edu 37 X 1571720 1571720 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ASMTL-62 NM_001173474 exon1 c.C14T p.P5L ATCACCGGGCACA . 48 28 6 0 . 0 0 0 0 0 CD99 4267 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 2637737 2637737 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CD99-40 NM_002414 exon4 c.G184T p.G62X GTTGATGGAGAAA . 413 222 537 2 . 0 0 0 0 0 MXRA5 25878 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 3229122 3229122 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MXRA5-136 NM_015419 exon7 c.C7122T p.P2374P GGGCATGGGTTCT . 157 74 192 1 . 0 0 0 0 0 MXRA5 25878 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 3241638 3241638 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MXRA5-136 NM_015419 exon5 c.G2088C p.V696V ATCCTCCACGATG . 73 45 91 0 . 0 0 0 0 0 MXRA5 25878 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 3248114 3248114 + Silent SNP C C A rs200950732 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MXRA5-136 NM_015419 exon4 c.G654T p.P218P GGTCCACGGATTT . 76 38 132 0 . 0 0 0 0 0 FAM9A 171482 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 8763196 8763196 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM9A-130 NM_174951 exon7 c.G754T p.G252X CTCCTCCTTCTTC . 48 32 59 0 . 0 0 0 0 0 AMELX 265 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 11316882 11316882 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AMELX-130 NM_182680 exon6 c.C401T p.P134L ACCTCCCTCCGCC . 162 77 153 0 . 0 0 0 0 0 ARHGAP6 395 hgsc.bcm.edu 37 X 11682852 11682852 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARHGAP6-227 NM_006125 exon1 c.C97A p.R33S TCTGGCGCAGCTT . 44 13 32 0 . 0 0 0 0 0 FAM9C 171484 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 13056583 13056583 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM9C-130 NM_174901 exon7 c.G478A p.G160R CTTTCCCATCTTG . 17 8 35 0 . 0 0 0 0 0 ZRSR2 8233 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 15841143 15841143 + Silent SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZRSR2-133 NM_005089 exon11 c.A1227G p.K409K TCACAAACGCACA . 214 125 210 1 . 0 0 0 0 0 GRPR 2925 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 16168476 16168476 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GRPR-565 NM_005314 exon2 c.G462A p.L154L TGCCCTGATGAAG . 107 60 164 0 . 0 0 0 0 0 PHKA2 5256 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 18911675 18911675 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PHKA2-131 NM_000292 exon33 c.G3636T p.M1212I GTAGGTCATCGTC . 231 103 155 0 . 0 0 0 0 0 PHKA2 5256 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 18942242 18942242 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PHKA2-131 NM_000292 exon17 c.C1725T p.G575G GTCTGAGCCATCA . 352 133 286 1 . 0 0 0 0 0 GPR64 10149 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 19046318 19046318 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR64-130 NM_001184834 exon10 c.G397T p.E133X TGCTTTCTTTATC . 147 46 153 0 . 0 0 0 0 0 SUPT20HL1 100130302 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 X 24383063 24383063 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001136234 exon1 c.C2186A p.A729E GTTCCGCACTAGG . 320 170 475 2 . 0 0 0 0 0 SUPT20HL1 100130302 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 24383065 24383065 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001136234 exon1 c.C2188A p.L730I TCCGCACTAGGTT . 320 171 479 1 . 0 0 0 0 0 MAGEB6 158809 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 26212653 26212653 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MAGEB6-133 NM_173523 exon2 c.G690T p.K230N GTACAAGCCCTAC . 126 66 208 0 . 0 0 0 0 0 MAGEB6 158809 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 26212780 26212780 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MAGEB6-133 NM_173523 exon2 c.G817T p.E273X CCCAGTGAAGGAA . 123 64 167 0 . 0 0 0 0 0 DCAF8L1 139425 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 27998833 27998833 + Missense_Mutation SNP G G T rs148833488 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DCAF8L1-112 NM_001017930 exon1 c.C619A p.R207S TGCCACGCTGGTT . 184 93 238 0 G|1.000;A|0.000 0 0 0 0 0 MAGEB1 4112 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 30268640 30268640 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MAGEB1-130 NM_177415 exon3 c.T30A p.R10R GCTCCGTGCTCGT . 271 143 377 0 . 0 0 0 0 0 TAB3 257397 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 30849617 30849617 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TAB3-131 NM_152787 exon11 c.G2066T p.C689F CTATCACAATTCC . 164 32 164 0 . 0 0 0 0 0 FTHL17 53940 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 31090008 31090008 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FTHL17-130 NM_031894 exon1 c.C63G p.I21M GCTGTTGATGGCG . 566 131 305 0 . 0 0 0 0 0 DMD 1756 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 31222119 31222119 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DMD-265 NM_004006 exon67 c.G9766A p.G3256S TACTGCCCCCAAA . 220 50 234 0 . 0 0 0 0 0 DMD 1756 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 X 31514988 31514988 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DMD-265 NM_004006 exon57 c.C8464A p.Q2822K TCAGCTGTAGCCA . 199 93 219 1 . 0 0 0 0 0 FAM47B 170062 ucsc.edu;bcgsc.ca 37 X 34960969 34960969 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM47B-196 NM_152631 exon1 c.G21T p.Q7H GCCACAGGACCGG . 271 162 368 4 . 0 0 0 0 0 FAM47B 170062 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 34961915 34961915 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM47B-196 NM_152631 exon1 c.C967A p.P323T CCGGAGCCTCCCG . 80 43 120 1 . 0 0 0 0 0 CXorf22 170063 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 35971805 35971805 + Missense_Mutation SNP T T G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CXorf22-131 NM_152632 exon7 c.T1143G p.F381L TGGATTTTTGAGA . 163 36 247 0 . 0 0 0 0 0 CXorf30 645090 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 36319291 36319291 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CXorf30-62 NM_001098843 exon8 c.G305T p.G102V ACCTTGGCAAGTA . 172 96 237 2 . 0 0 0 0 0 FAM47C 442444 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 37027035 37027035 + Silent SNP G G T rs61730915 byfrequency;alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM47C-111 NM_001013736 exon1 c.G552T p.G184G CTGTGGGGAATTC . 71 49 93 0 G|0.992;A|0.008 0 0 0 0 0 FAM47C 442444 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 37028109 37028109 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM47C-111 NM_001013736 exon1 c.C1626A p.S542R GAGTAGCGTATCT . 92 41 117 1 . 0 0 0 0 0 USP9X 8239 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 41025466 41025466 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . USP9X-563 NM_001039591 exon16 c.G2327C p.R776T TTTGGAGGGTAAG . 48 30 48 0 . 0 0 0 0 0 CHST7 56548 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 46433693 46433693 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CHST7-133 NM_019886 exon1 c.C327A p.T109T TGCCACCTGGCGC . 185 39 138 2 . 0 0 0 0 0 SLC9A7 84679 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 46541866 46541866 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC9A7-132 NM_001257291 exon2 c.G430T p.V144L CATTCACTAATAA . 133 22 152 0 . 0 0 0 0 0 NDUFB11 54539 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 47002022 47002022 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NDUFB11-130 NM_019056 exon2 c.C329A p.P110H TAGTCAGGCAGAT . 202 48 221 0 . 0 0 0 0 0 NDUFB11 54539 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 47002127 47002127 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NDUFB11-130 NM_019056 exon2 c.G224T p.G75V TCATAACCATGGG . 253 48 322 0 . 0 0 0 0 0 RBM10 8241 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 47032530 47032530 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RBM10-626 NM_001204468 exon5 c.C631A p.R211S TAGATCCGTGGCC . 137 25 121 1 . 0 0 0 0 0 ZNF81 347344 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 47705685 47705685 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF81-130 NM_007137 exon2 c.G19T p.A7S GAGGACGCTCCCC . 89 24 82 0 . 0 0 0 0 0 ZNF630 57232 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 47919260 47919260 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZNF630-131 NM_001037735 exon5 c.T571A p.L191I TTAGTAAGTCTGA . 34 10 43 0 . 0 0 0 0 0 SLC38A5 92745 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 48319044 48319044 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC38A5-133 NM_033518 exon14 c.G1059T p.V353V GAACAGCACGACT . 172 37 152 1 . 0 0 0 0 0 WAS 7454 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 48547809 48547809 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WAS-563 NM_000377 exon11 c.C1439T p.A480V GCAGAGCCATCCA . 342 75 360 0 . 0 0 0 0 0 HDAC6 10013 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 48676461 48676461 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HDAC6-230 NM_006044 exon21 c.G1939T p.D647Y ATTGTGGATTGGG . 286 51 271 1 . 0 0 0 0 0 HDAC6 10013 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 48678641 48678641 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HDAC6-230 NM_006044 exon23 c.C2316A p.G772G CAGTGGCCGCATT . 80 15 77 0 . 0 0 0 0 0 OTUD5 55593 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 48814313 48814313 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OTUD5-541 NM_001136157 exon1 c.G520T p.G174C TGTAGCCTGCGCC . 148 31 86 1 . 0 0 0 0 0 KCND1 3750 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 48822694 48822694 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KCND1-133 NM_004979 exon5 c.G1486C p.E496Q TGAGCTCATCTGT . 418 76 385 1 . 0 0 0 0 0 GRIPAP1 56850 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 48832699 48832699 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GRIPAP1-227 NM_020137 exon23 c.A2138T p.Q713L AGCCGCTGAAAGA . 228 46 222 1 . 0 0 0 0 0 GRIPAP1 56850 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 48853737 48853737 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GRIPAP1-227 NM_020137 exon5 c.G231C p.M77I CTGCAGCATCTCA . 51 13 36 0 . 0 0 0 0 0 PRAF2 11230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 48929617 48929617 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PRAF2-130 NM_007213 exon3 c.G448C p.E150Q TGTTCTCAATCTT . 73 19 66 0 . 0 0 0 0 0 WDR45 11152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 48935536 48935536 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WDR45-131 NM_007075 exon4 c.C90T p.R30R GTAGATGCGCACA . 91 19 93 0 . 0 0 0 0 0 CACNA1F 778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 49074374 49074374 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CACNA1F-176 NM_005183 exon25 c.G3052A p.G1018R GCACCCCGATGCA . 152 46 155 0 . 0 0 0 0 0 PPP1R3F 89801 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 49142338 49142338 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PPP1R3F-229 NM_033215 exon4 c.G1186T p.D396Y GAAGGTGATGTCC . 329 49 260 0 . 0 0 0 0 0 CLCN5 1184 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 49851057 49851057 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CLCN5-132 NM_001127898 exon11 c.C1087T p.R363C ACTCTACGCTCCA . 117 30 100 0 . 0 0 0 0 0 AKAP4 8852 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 49957836 49957836 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AKAP4-540 NM_003886 exon5 c.C1528A p.Q510K GCTTTTGGTTCCA . 111 23 96 1 . 0 0 0 0 0 CCNB3 85417 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 50054083 50054083 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CCNB3-482 NM_033031 exon5 c.2914delG p.G972fs CAAGTTGGAACCA . 186 50 204 0 . 0 0 0 0 0 DGKK 139189 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 50121627 50121627 + RNA SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DGKK-227 . . . . CATCTGCACAGAA . 166 71 161 1 . 0 0 0 0 0 SHROOM4 57477 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 50377365 50377365 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SHROOM4-131 NM_020717 exon4 c.C1708A p.R570R CACTTCGCCTACC . 65 16 87 0 . 0 0 0 0 0 SHROOM4 57477 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 50377405 50377405 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SHROOM4-131 NM_020717 exon4 c.G1668C p.G556G GCTGTCCCCTTCT . 97 21 138 0 . 0 0 0 0 0 NUDT10 170685 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 51075872 51075872 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NUDT10-90 NM_153183 exon2 c.C55A p.R19R AAGAAGCGGGCGG . 759 121 541 1 . 0 0 0 0 0 GSPT2 23708 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 51487049 51487049 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GSPT2-228 NM_018094 exon1 c.T327A p.P109P GGCACCTGTGGAA . 67 12 28 0 . 0 0 0 0 0 MAGED1 9500 hgsc.bcm.edu;bcgsc.ca 37 X 51639728 51639728 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MAGED1-133 NM_001005333 exon5 c.1145delG p.R382fs CAGCTAGGCAGAC . 283 106 349 2 . 0 0 0 0 0 GPR173 54328 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 53105990 53105990 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR173-130 NM_018969 exon2 c.G187T p.D63Y CTGCTGGACCTGT . 121 26 145 0 . 0 0 0 0 0 IQSEC2 23096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 53278002 53278002 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IQSEC2-178 NM_001111125 exon6 c.G2360T p.G787V GCCACTCCCACCG . 94 42 76 0 . 0 0 0 0 0 IQSEC2 23096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 53279726 53279726 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IQSEC2-178 NM_001111125 exon5 c.G2032T p.G678C TCCGACCCCCAGC . 68 18 57 0 . 0 0 0 0 0 IQSEC2 23096 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 53279966 53279966 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IQSEC2-178 NM_001111125 exon5 c.C1792G p.P598A TAGGAGGCTCAAT . 115 27 106 0 . 0 0 0 0 0 HUWE1 10075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 53561133 53561133 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HUWE1-280 NM_031407 exon83 c.G12857A p.R4286H AAAGAACGCAATG . 414 97 434 0 . 0 0 0 0 0 HUWE1 10075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 53602737 53602737 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HUWE1-280 NM_031407 exon45 c.G5896T p.D1966Y TAGGATCAGATTT . 146 26 178 0 . 0 0 0 0 0 HUWE1 10075 broad.mit.edu 37 X 53634661 53634661 + Splice_Site SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HUWE1-280 NM_031407 exon26 c.2320-1G>T . TTTCATCTAGGTA . 45 4 56 0 . 0 0 0 0 0 WNK3 65267 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 54228531 54228531 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WNK3-441 NM_020922 exon23 c.G4966T p.D1656Y TCCAGTCATCCAC . 105 26 127 0 . 0 0 0 0 0 WNK3 65267 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 54263789 54263789 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WNK3-441 NM_020922 exon20 c.G4210C p.E1404Q AGGTTTCCTGAAG . 63 6 81 0 . 0 0 0 0 0 WNK3 65267 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 54263899 54263899 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WNK3-441 NM_020922 exon20 c.C4100A p.S1367Y TCACTAGAATGGT . 15 5 21 0 . 0 0 0 0 0 GNL3L 54552 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 54586952 54586952 + Splice_Site SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GNL3L-131 NM_019067 exon16 c.1667-1G>C . TTTGCAGATAAAA . 106 20 79 0 . 0 0 0 0 0 ITIH6 347365 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 54800536 54800536 + Missense_Mutation SNP A A C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_198510 exon6 c.T881G p.M294R CCAAACATGGAGC . 442 81 446 0 . 0 0 0 0 0 ITIH6 347365 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 54817377 54817377 + Nonsense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_198510 exon4 c.T509A p.L170X TTCACCAATTGGC . 223 45 217 0 . 0 0 0 0 0 KLF8 11279 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 56259773 56259773 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KLF8-131 NM_001159296 exon2 c.C6A p.V2V CATGGTCGGTAAG . 104 21 140 1 . 0 0 0 0 0 SPIN3 169981 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 57020873 57020873 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPIN3-131 NM_001010862 exon2 c.C508A p.P170T ATACAGGATCTTT . 173 31 190 1 . 0 0 0 0 0 SPIN2B 474343 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 57146348 57146348 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPIN2B-90 NM_001006683 exon2 c.T715A p.Y239N TGAAATACACAGA . 824 160 973 0 . 0 0 0 0 0 SPIN2B 474343 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 57146372 57146372 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPIN2B-90 NM_001006683 exon2 c.C691A p.Q231K CCACTTGGTGAAT . 771 141 956 0 . 0 0 0 0 0 SPIN2A 54466 broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 57162366 57162366 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPIN2A-130 NM_019003 exon2 c.C665G p.S222C CTTTTGGAGCCAT . 734 148 824 1 . 0 0 0 0 0 HEPH 9843 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 65412128 65412128 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HEPH-135 NM_138737 exon7 c.G1382T p.R461I ATTTGAGAGAGCC . 209 110 345 1 . 0 0 0 0 0 FAM155B 27112 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 68748874 68748874 + Missense_Mutation SNP C C G rs200565192 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM155B-131 NM_015686 exon2 c.C900G p.S300R CTTCAGCGTGACC . 135 80 204 0 C|0.999;T|0.001 0 0 0 0 0 OTUD6A 139562 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 69282886 69282886 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OTUD6A-541 NM_207320 exon1 c.G512T p.R171L TGCTGCGCTGCCG . 269 154 318 0 . 0 0 0 0 0 GDPD2 54857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 69646560 69646560 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GDPD2-132 NM_017711 exon7 c.G525A p.V175V GCCTGTGGCTGAT . 217 137 268 0 . 0 0 0 0 0 TAF1 6872 hgsc.bcm.edu;bcgsc.ca 37 X 70683717 70683717 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TAF1-900 NM_004606 exon38 c.5503delG p.D1835fs ACCCAAGACACAA . 337 188 480 2 . 0 0 0 0 0 OGT 8473 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 70776864 70776864 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OGT-113 NM_181672 exon10 c.A1229T p.D410V TGCAGGATGTTCA . 207 91 320 0 . 0 0 0 0 0 CXCR3 2833 broad.mit.edu 37 X 70837423 70837423 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CXCR3-660 NM_001142797 exon2 c.A40G p.T14A TAACTGTCCCCGC . 139 37 183 43 . 0 0 0 0 0 NHSL2 340527 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 71354404 71354404 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NHSL2-108 NM_001013627 exon4 c.G610A p.V204M CAGGGTGTGAGGG . 250 140 343 0 . 0 0 0 0 0 ZCCHC5 203430 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 77912640 77912640 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZCCHC5-131 NM_152694 exon2 c.C1278A p.I426I GCAGTTGATTGCA . 157 96 200 0 . 0 0 0 0 0 TBX22 50945 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 79278676 79278676 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TBX22-628 NM_016954 exon2 c.G293T p.G98V TTCAAGGATCTGA . 190 102 286 2 . 0 0 0 0 0 BRWD3 254065 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 79971694 79971694 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BRWD3-134 NM_153252 exon20 c.G2287T p.V763F TTTCAACTGTATA . 59 20 79 0 . 0 0 0 0 0 SATL1 340562 ucsc.edu;bcgsc.ca 37 X 84362970 84362970 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SATL1-175 NM_001012980 exon1 c.C1005A p.S335R GCTCAGGCTTTGT . 227 124 350 3 . 0 0 0 0 0 DACH2 117154 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 85404068 85404068 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DACH2-136 NM_001139514 exon1 c.C444T p.T148T CATCACCAGGAAA . 81 40 116 1 . 0 0 0 0 0 KLHL4 56062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 86890618 86890618 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KLHL4-133 NM_019117 exon9 c.T1768A p.F590I GAATACTTTGACC . 99 26 174 0 . 0 0 0 0 0 PCDH11X 27328 hgsc.bcm.edu;bcgsc.ca 37 X 91132646 91132646 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDH11X-193 NM_001168363 exon2 c.T1407A p.S469S CCAGTCTTTCGTA . 283 165 448 2 . 0 0 0 0 0 PCDH11X 27328 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 91133492 91133492 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDH11X-193 NM_001168363 exon2 c.C2253G p.V751V GTTGGTCAAAGCT . 519 292 782 0 . 0 0 0 0 0 PCDH11X 27328 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 91133563 91133563 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDH11X-193 NM_001168363 exon2 c.C2324A p.S775X ATGAGTCGGTGAC . 526 312 785 2 . 0 0 0 0 0 PCDH11X 27328 ucsc.edu 37 X 91873458 91873458 + Missense_Mutation SNP G G C rs2556894 bycluster TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDH11X-193 NM_032968 exon7 c.G3563C p.R1188P GCCCACGAGTGAC . 751 121 795 2 . 0 0 0 0 0 PCDH11X 27328 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 91873488 91873488 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDH11X-193 NM_032968 exon7 c.G3593T p.S1198I GCCACAGCCCTCC . 812 136 855 1 . 0 0 0 0 0 DIAPH2 1730 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 96724708 96724708 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DIAPH2-133 NM_007309 exon27 c.G3257T p.C1086F ATCCCTGTGCAAC . 286 44 371 0 . 0 0 0 0 0 PCDH19 57526 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 99661493 99661493 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCDH19-110 NM_001184880 exon1 c.C2103G p.I701M GCACTTGATTGCC . 142 54 156 0 . 0 0 0 0 0 TNMD 64102 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 99854700 99854700 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TNMD-130 NM_022144 exon7 c.C940A p.L314M CGCATGCTGGGGA . 84 15 80 0 . 0 0 0 0 0 TSPAN6 7105 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 99890216 99890216 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TSPAN6-131 NM_003270 exon3 c.G310T p.E104X CCAGTTCGACCAA . 175 37 187 0 . 0 0 0 0 0 CSTF2 1478 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 100093269 100093269 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CSTF2-131 NM_001325 exon13 c.G1653T p.Q551H AGACCAGATTGCC . 195 33 218 0 . 0 0 0 0 0 ARL13A 392509 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 100243238 100243238 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARL13A-131 NM_001162490 exon7 c.C710A p.S237X AATGCTCAATCGA . 490 132 454 3 . 0 0 0 0 0 DRP2 1821 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 100509496 100509496 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DRP2-132 NM_001939 exon18 c.C2060A p.P687H AACACCCTCAGCG . 491 109 568 2 . 0 0 0 0 0 BTK 695 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 100615077 100615077 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BTK-1395 NM_000061 exon9 c.G838T p.E280X CTTACTCATACAT . 69 11 69 0 . 0 0 0 0 0 ARMCX3 51566 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 100880257 100880257 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARMCX3-131 NM_016607 exon5 c.C288A p.A96A AAGGGCCAGGGCT . 93 23 127 0 . 0 0 0 0 0 ARMCX2 9823 broad.mit.edu 37 X 100911671 100911671 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARMCX2-136 NM_014782 exon5 c.G904T p.V302F CTTCAACTTTGCT . 92 14 87 2 . 0 0 0 0 0 NXF5 55998 broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 101096062 101096062 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NXF5-204 NM_032946 exon8 c.G406T p.D136Y CAATGTCACGGCC . 433 147 502 1 . 0 0 0 0 0 BEX5 340542 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 101409039 101409039 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BEX5-86 NM_001012978 exon3 c.G199A p.D67N CCATATCATCTCC . 167 34 201 0 . 0 0 0 0 0 GPRASP1 9737 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 101909810 101909810 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPRASP1-131 NM_001099411 exon3 c.T969A p.A323A GAGAGCTGGGAAG . 46 25 70 0 . 0 0 0 0 0 GPRASP2 114928 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 101970728 101970728 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPRASP2-131 NM_138437 exon4 c.G931T p.E311X AGGGAGGAGGCAA . 153 41 139 0 . 0 0 0 0 0 BEX1 55859 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 102317893 102317893 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BEX1-109 NM_018476 exon3 c.A310G p.S104G GCAGACTATGACT . 290 62 252 1 . 0 0 0 0 0 NXF3 56000 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 102334159 102334159 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NXF3-205 NM_022052 exon16 c.G1368T p.V456V CTTGAACACCCCG . 432 194 481 2 . 0 0 0 0 0 BEX4 56271 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 102471392 102471392 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BEX4-62 NM_001080425 exon3 c.G311T p.R104L ATATGCGCTTCCA . 323 118 309 2 . 0 0 0 0 0 RAB40A 142684 bcgsc.ca 37 X 102755188 102755188 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RAB40A-227 NM_080879 exon3 c.C497A p.S166Y GTGAAAGACTCTA . 307 94 281 3 . 0 0 0 0 0 TCEAL1 9338 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 102884854 102884854 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TCEAL1-131 NM_001006639 exon3 c.C10A p.P4T GACAAACCACGCA . 71 18 66 1 . 0 0 0 0 0 H2BFM 286436 bcgsc.ca 37 X 103294687 103294687 + Missense_Mutation SNP C C A rs200102787 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . H2BFM-109 NM_001164416 exon1 c.C144A p.H48Q GCGCCACGCCAAC . 405 133 302 2 . 0 0 0 0 0 SLC25A53 401612 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 103349892 103349892 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001012755 exon2 c.C49A p.R17R CTGCTCGCGTCCT . 209 69 208 0 . 0 0 0 0 0 TEX13A 56157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 104464179 104464179 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TEX13A-132 NM_031274 exon5 c.G697T p.A233S TGGAGGCAGCCCT . 48 14 47 0 . 0 0 0 0 0 TEX13A 56157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 104465051 104465051 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TEX13A-132 NM_031274 exon2 c.G31T p.G11W GGAACCCGCTACT . 90 33 71 0 . 0 0 0 0 0 IL1RAPL2 26280 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 105011209 105011209 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IL1RAPL2-194 NM_017416 exon11 c.C1616A p.S539Y AGGGATCCAAAAG . 162 62 190 0 . 0 0 0 0 0 NRK 203447 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 105132287 105132287 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NRK-630 NM_198465 exon5 c.G253T p.D85Y CCATAGGATGAGG . 393 145 405 1 . 0 0 0 0 0 NRK 203447 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 105153825 105153825 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NRK-630 NM_198465 exon13 c.G2192T p.W731L GCAGATGGGAAGA . 273 68 295 0 . 0 0 0 0 0 NRK 203447 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 105178368 105178368 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NRK-630 NM_198465 exon20 c.C3431G p.S1144C ATTTTTCTGCCAA . 320 92 298 0 . 0 0 0 0 0 NRK 203447 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 105187993 105187993 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NRK-630 NM_198465 exon24 c.C4019A p.A1340E TTTATGCATGGGC . 364 115 304 0 . 0 0 0 0 0 NRK 203447 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 105197070 105197070 + Missense_Mutation SNP A A G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NRK-630 NM_198465 exon28 c.A4558G p.I1520V AAGGCCATTGAAG . 299 130 239 0 . 0 0 0 0 0 SERPINA7 6906 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 105279361 105279361 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SERPINA7-226 NM_000354 exon3 c.C638T p.P213L TCAAAAGGATTTG . 115 34 140 0 . 0 0 0 0 0 TBC1D8B 54885 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 106083404 106083404 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TBC1D8B-133 NM_198881 exon9 c.G1480T p.G494X TTAAGAGGAGAAC . 392 131 394 0 . 0 0 0 0 0 CLDN2 9075 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 106172103 106172103 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CLDN2-131 NM_001171092 exon2 c.C645A p.P215P ACCTCCCAAAGTC . 130 40 104 1 . 0 0 0 0 0 MORC4 79710 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 106185911 106185911 + Missense_Mutation SNP G G T rs150736453 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MORC4-131 NM_001085354 exon15 c.C2210A p.S737Y GCAGCAGAGGCCA . 184 71 130 2 G|1.000;A|0.000 0 0 0 0 0 MORC4 79710 bcgsc.ca 37 X 106242923 106242923 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MORC4-131 NM_001085354 exon2 c.C159A p.A53A CGCGATGGCACTG . 166 72 42 1 . 0 0 0 0 0 COL4A6 1288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 107420097 107420097 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COL4A6-199 NM_001847 exon28 c.G2663T p.G888V GGCAACCCAGCGA . 166 60 123 0 . 0 0 0 0 0 COL4A5 1287 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 107911571 107911571 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . COL4A5-133 NM_000495 exon41 c.A3627T p.L1209F AGGATTACCTGGG . 294 78 274 2 . 0 0 0 0 0 IRS4 8471 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 107976957 107976957 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IRS4-623 NM_003604 exon1 c.C2618T p.P873L TTTGAAGGTGATC . 117 35 137 0 . 0 0 0 0 0 GUCY2F 2986 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 108708517 108708517 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GUCY2F-540 NM_001522 exon3 c.C886A p.R296R GGACCCGGTAGGG . 234 84 212 1 . 0 0 0 0 0 AMMECR1 9949 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 109507776 109507776 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AMMECR1-130 NM_015365 exon2 c.C525G p.C175W ACCTATGCATCCA . 375 105 334 0 . 0 0 0 0 0 RGAG1 57529 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 109696335 109696335 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RGAG1-132 NM_020769 exon3 c.G2490C p.M830I TGGAATGATGTCA . 187 60 175 0 . 0 0 0 0 0 RGAG1 57529 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 109696663 109696663 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RGAG1-132 NM_020769 exon3 c.C2818A p.Q940K ACTGCACAAACAA . 153 48 157 3 . 0 0 0 0 0 CAPN6 827 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 110490730 110490730 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CAPN6-195 NM_014289 exon12 c.G1609T p.V537L GGTTTACAGCTGG . 149 51 139 0 . 0 0 0 0 0 DCX 1641 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 110653544 110653544 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DCX-554 NM_000555 exon2 c.G326A p.S109N GTGGGGCTAGGCA . 227 72 197 0 . 0 0 0 0 0 ALG13 79868 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 110964940 110964940 + Splice_Site SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ALG13-130 NM_001257230 exon12 c.1123+1G>T . GAAAAGGTAAAGA . 125 24 126 0 . 0 0 0 0 0 TRPC5 7224 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 111025191 111025191 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRPC5-130 NM_012471 exon8 c.G2072A p.R691Q CTTCTCCGTCTAC . 159 49 137 2 . 0 0 0 0 0 ZCCHC16 340595 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 111698228 111698228 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZCCHC16-91 NM_001004308 exon3 c.C272A p.A91E ATCCTGCAAATGA . 153 36 139 1 . 0 0 0 0 0 ZCCHC16 340595 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 111698591 111698591 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZCCHC16-91 NM_001004308 exon3 c.G635C p.C212S CTCAGTGCATTCA . 333 114 325 0 . 0 0 0 0 0 MIR448 554212 ucsc.edu;bcgsc.ca;mdanderson.org 37 X 114058112 114058112 + RNA SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . . . . . CATCTCCCAGCCC . 73 36 75 0 . 0 0 0 0 0 RBMXL3 139804 ucsc.edu;bcgsc.ca 37 X 114424922 114424922 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001145346 exon1 c.C918A p.S306R CAAGAGCTACGGA . 345 115 270 3 . 0 0 0 0 0 RBMXL3 139804 ucsc.edu;bcgsc.ca 37 X 114425751 114425751 + Missense_Mutation SNP A A C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001145346 exon1 c.A1747C p.N583H CAGAGCAACCGCT . 303 56 224 2 . 0 0 0 0 0 RBMXL3 139804 bcgsc.ca 37 X 114425772 114425772 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001145346 exon1 c.T1768C p.C590R GGAGGCTGCTACG . 301 39 237 3 . 0 0 0 0 0 RBMXL3 139804 bcgsc.ca 37 X 114425840 114425840 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001145346 exon1 c.C1836T p.S612S CTACAGCGGGGGC . 358 19 263 1 . 0 0 0 0 0 LUZP4 51213 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 114540824 114540824 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LUZP4-132 NM_016383 exon4 c.G397C p.E133Q CAGTCAGAGGGGA . 302 106 258 0 . 0 0 0 0 0 SLC6A14 11254 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 115568956 115568956 + Splice_Site SNP A A C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC6A14-133 NM_007231 exon2 c.49-2A>C . TTCCCCAGAAAGT . 61 13 67 0 . 0 0 0 0 0 CXorf61 203413 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 115593996 115593996 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CXorf61-130 NM_001017978 exon1 c.G22A p.A8T TGCTCGCTAGGAG . 405 155 367 2 . 0 0 0 0 0 KLHL13 90293 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 117043644 117043644 + Missense_Mutation SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KLHL13-556 NM_001168299 exon6 c.A995T p.Q332L TCTGACTGCATAA . 190 71 203 0 . 0 0 0 0 0 KLHL13 90293 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 117043657 117043657 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KLHL13-556 NM_001168299 exon6 c.C982A p.Q328K CTGGCTGCATATA . 195 78 201 0 . 0 0 0 0 0 DOCK11 139818 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 117700598 117700598 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DOCK11-93 NM_144658 exon9 c.G933T p.M311I GAGCATGCATCCG . 356 129 292 0 . 0 0 0 0 0 ZCCHC12 170261 ucsc.edu;bcgsc.ca 37 X 117959692 117959692 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZCCHC12-131 NM_173798 exon4 c.C485A p.A162E TTCAGGCAGGCAT . 228 86 216 2 . 0 0 0 0 0 KIAA1210 57481 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 118215375 118215375 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIAA1210-67 NM_020721 exon14 c.G5047C p.V1683L GCTCAACTGGGTT . 185 64 148 0 . 0 0 0 0 0 KIAA1210 57481 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 118221793 118221793 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIAA1210-67 NM_020721 exon11 c.C3400A p.Q1134K ACAGTTGCTGGAC . 142 34 146 0 . 0 0 0 0 0 KIAA1210 57481 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 118222705 118222705 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KIAA1210-67 NM_020721 exon11 c.G2488T p.E830X GCTCCTCCTCAGA . 19 6 33 0 . 0 0 0 0 0 PGRMC1 10857 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 118370647 118370647 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PGRMC1-130 NM_006667 exon1 c.C321A p.Y107X ATTCTACGGGCCC . 245 79 121 0 . 0 0 0 0 0 PGRMC1 10857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 118374361 118374361 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PGRMC1-130 NM_006667 exon2 c.G418C p.D140H GAGTACGATGACC . 151 43 139 0 . 0 0 0 0 0 NKRF 55922 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 118723944 118723944 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NKRF-131 NM_001173487 exon4 c.G1489C p.V497L GAATCACTTTGCA . 54 22 55 0 . 0 0 0 0 0 SEPT6 23157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 118763333 118763333 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SEPT6-969 NM_145802 exon9 c.G1228A p.G410S GGGAGCCCTGGGA . 106 17 75 0 . 0 0 0 0 0 AKAP14 158798 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 119048832 119048832 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AKAP14-226 NM_178813 exon5 c.C432A p.T144T CAAAACCAAACCA . 134 36 103 0 . 0 0 0 0 0 CT47B1 643311 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 120009189 120009189 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001145718 exon1 c.C336G p.T112T CCGACGGGTGGCC . 638 230 416 1 . 0 0 0 0 0 GRIA3 2892 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 122532571 122532571 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GRIA3-134 NM_000828 exon7 c.C997A p.R333R GTGTCCCGGAGAG . 218 64 202 0 . 0 0 0 0 0 THOC2 57187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 122747368 122747368 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . THOC2-133 NM_001081550 exon36 c.C4559T p.S1520F TAAGGAGATTCAC . 27 15 20 0 . 0 0 0 0 0 THOC2 57187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 122755031 122755031 + Nonsense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . THOC2-133 NM_001081550 exon31 c.C4193G p.S1398X ATATCTGATCTGG . 69 16 66 0 . 0 0 0 0 0 TENM1 10178 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 123657285 123657285 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001163278 exon17 c.G2962T p.V988L GAAGCACAATAGG . 192 70 189 1 . 0 0 0 0 0 TENM1 10178 ucsc.edu;bcgsc.ca 37 X 123663787 123663787 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001163278 exon16 c.C2698A p.P900T CTAGAGGAGTTCC . 319 108 224 2 . 0 0 0 0 0 TENM1 10178 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 123680874 123680874 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001163278 exon15 c.G2501T p.C834F CCCTGGCAGAGAG . 206 76 216 1 . 0 0 0 0 0 TENM1 10178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 123870853 123870853 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001163278 exon4 c.C730T p.L244L TATGCAGATGGAC . 97 31 91 0 . 0 0 0 0 0 DCAF12L2 340578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 125299535 125299535 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DCAF12L2-113 NM_001013628 exon1 c.G373T p.V125L ACTGCACGTCCAC . 452 154 319 0 . 0 0 0 0 0 DCAF12L1 139170 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 125686226 125686226 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DCAF12L1-132 NM_178470 exon1 c.G366C p.V122V GTCCACCACGAAA . 629 200 431 1 . 0 0 0 0 0 CXorf64 100130613 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 125954967 125954967 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001122716 exon2 c.G346T p.A116S GCACTGGCAGGCT . 279 103 247 0 . 0 0 0 0 0 ACTRT1 139741 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 127185766 127185766 + Missense_Mutation SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ACTRT1-133 NM_138289 exon1 c.T420A p.H140Q CACCGCATGATTA . 219 68 208 0 . 0 0 0 0 0 ACTRT1 139741 ucsc.edu;bcgsc.ca 37 X 127186027 127186027 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ACTRT1-133 NM_138289 exon1 c.G159A p.Q53Q GTACTTCTGATTA . 293 95 276 3 . 0 0 0 0 0 SMARCA1 6594 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 128649928 128649928 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SMARCA1-230 NM_139035 exon4 c.C472A p.L158M CAGACAGTAGCTC . 151 63 137 0 . 0 0 0 0 0 XPNPEP2 7512 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 128888456 128888456 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . XPNPEP2-130 NM_003399 exon12 c.C1116T p.D372D GCGGGACGCTGTG . 131 38 95 0 . 0 0 0 0 0 ZDHHC9 51114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 128940383 128940383 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ZDHHC9-131 NM_001008222 exon10 c.C1058A p.P353Q GGCTCTGGGGGCT . 96 29 85 0 . 0 0 0 0 0 UTP14A 10813 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 129053172 129053172 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . UTP14A-132 NM_006649 exon7 c.G559A p.E187K GAGCAGGAAATTT . 173 33 146 0 . 0 0 0 0 0 BCORL1 63035 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 129148844 129148844 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BCORL1-294 NM_021946 exon3 c.C2096A p.P699Q GGGACCCGAGCAC . 229 76 188 1 . 0 0 0 0 0 BCORL1 63035 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 129154972 129154972 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BCORL1-294 NM_021946 exon4 c.C3454A p.P1152T AAGCTGCCCAGTG . 174 66 153 1 . 0 0 0 0 0 BCORL1 63035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 129173157 129173157 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BCORL1-294 NM_021946 exon9 c.G4518T p.W1506C CATCTGGCTCCTG . 148 41 130 0 . 0 0 0 0 0 AIFM1 9131 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 129289211 129289211 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AIFM1-586 NM_145812 exon2 c.G157T p.G53C AAGCACCTGTAGA . 227 82 164 0 . 0 0 0 0 0 ENOX2 10495 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 129843245 129843245 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ENOX2-131 NM_182314 exon4 c.G21T p.W7C CCACAGCCATCTA . 192 63 159 0 . 0 0 0 0 0 ARHGAP36 158763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 130222738 130222738 + Silent SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ARHGAP36-133 NM_144967 exon12 c.C1623G p.G541G AACTGGCGTCAGC . 116 37 125 0 . 0 0 0 0 0 IGSF1 3547 ucsc.edu;bcgsc.ca 37 X 130419880 130419880 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IGSF1-133 NM_001555 exon4 c.C240A p.I80I AGGGCGGATCCAG . 256 87 194 2 . 0 0 0 0 0 FRMD7 90167 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 131214283 131214283 + Missense_Mutation SNP T T C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FRMD7-228 NM_194277 exon10 c.A917G p.Q306R TGCCTTTGGGTTC . 205 60 185 1 . 0 0 0 0 0 RAP2C 57826 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 131348263 131348263 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RAP2C-848 NM_021183 exon3 c.G485T p.R162M ATTTGCCTGACGA . 447 150 417 0 . 0 0 0 0 0 DDX26B 203522 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 134679347 134679347 + Splice_Site SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DDX26B-226 NM_182540 exon3 c.190-1G>T . TTTGCAGGCTGGT . 138 49 117 0 . 0 0 0 0 0 DDX26B 203522 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 134707987 134707987 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DDX26B-226 NM_182540 exon12 c.G1630C p.D544H GATGAAGGTAAAA . 208 65 242 0 . 0 0 0 0 0 SAGE1 55511 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 134992242 134992242 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SAGE1-133 NM_018666 exon15 c.G1777T p.A593S CAAGCAGCATCCG . 270 90 295 0 . 0 0 0 0 0 SLC9A6 10479 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 135098854 135098854 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC9A6-131 NM_001042537 exon10 c.G1287T p.M429I CTACATGGGGCTG . 100 40 101 0 . 0 0 0 0 0 SLC9A6 10479 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 135112310 135112310 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC9A6-131 NM_001042537 exon13 c.C1636A p.Q546K TCAGACCAAGAAC . 181 69 150 2 . 0 0 0 0 0 FHL1 2273 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 135288629 135288629 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FHL1-130 NM_001159701 exon2 c.C125G p.P42R GGGATCCCTTGCA . 447 77 439 1 . 0 0 0 0 0 MAP7D3 79649 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 135313958 135313958 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MAP7D3-110 NM_024597 exon8 c.G1158A p.P386P CGCCTCCGGGGAT . 137 60 120 0 . 0 0 0 0 0 GPR112 139378 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 135428212 135428212 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR112-183 NM_153834 exon6 c.G2347C p.V783L ACTGTTGTTCCAT . 250 87 286 0 . 0 0 0 0 0 GPR112 139378 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 135430562 135430562 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR112-183 NM_153834 exon6 c.C4697A p.P1566Q CAATACCAGTTAA . 241 72 224 1 . 0 0 0 0 0 GPR112 139378 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 135474475 135474475 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR112-183 NM_153834 exon17 c.C7996A p.P2666T GCTGACCCAGTGG . 302 80 294 1 . 0 0 0 0 0 MIR504 574507 ucsc.edu;bcgsc.ca;mdanderson.org 37 X 137749950 137749950 + RNA SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . . . . . CCAACAGCAGCTG . 53 23 53 0 . 0 0 0 0 0 FGF13 2258 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 137790993 137790993 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FGF13-626 NM_001139500 exon4 c.G315T p.E105D GCTGTCCTCATCT . 131 35 126 2 . 0 0 0 0 0 MCF2 4168 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 138699719 138699719 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MCF2-227 NM_001171876 exon11 c.C1132A p.R378R GTATCCGTTTTGC . 115 35 112 0 . 0 0 0 0 0 MAGEC1 9947 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 140993233 140993233 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MAGEC1-133 NM_005462 exon4 c.C43G p.L15V AGTCTTCTCCAGA . 114 29 99 0 . 0 0 0 0 0 MAGEC2 51438 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 141291129 141291129 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MAGEC2-193 NM_016249 exon3 c.C645A p.T215T CTCATCGGTGAGG . 261 101 253 0 . 0 0 0 0 0 SPANXN3 139067 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 142605191 142605191 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SPANXN3-132 NM_001009609 exon1 c.G29T p.G10V TTCTCCCCATTGG . 118 31 111 0 . 0 0 0 0 0 SLITRK4 139065 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 142717517 142717517 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLITRK4-193 NM_001184750 exon2 c.G1408A p.D470N TGGAGTCAAAGGT . 165 66 168 0 . 0 0 0 0 0 UBE2NL 389898 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 142967266 142967266 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . UBE2NL-226 NM_001012989 exon1 c.G64T p.G22C GTTCCTGGCATCA . 211 79 212 1 . 0 0 0 0 0 SLITRK2 84631 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 144904123 144904123 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLITRK2-136 NM_001144005 exon5 c.C180A p.P60P GCCCCCCCAGTAT . 185 64 188 0 . 0 0 0 0 0 SLITRK2 84631 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 144905093 144905093 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLITRK2-136 NM_001144005 exon5 c.G1150T p.G384W CTAACAGGGAACT . 206 87 202 1 . 0 0 0 0 0 SLITRK2 84631 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 144905170 144905170 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLITRK2-136 NM_001144005 exon5 c.C1227A p.N409K AAACAACAGGATT . 257 66 242 0 . 0 0 0 0 0 MIR892B 100126307 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 145078780 145078780 + RNA SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . . . . . TTCTGAGTAGGGC . 491 179 456 0 . 0 0 0 0 0 MIR506 574511 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 146312360 146312360 + RNA SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . . . . . GTGGTGGCACTGA . 293 87 257 0 . 0 0 0 0 0 MIR509-1 574514 hgsc.bcm.edu 37 X 146340338 146340339 + RNA DEL CT CT - rs36092315 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CT CT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . . . . . TTGCCACTGTCTG . 795 0 605 0 -|0.063;T|0.937 0 0 0 0 0 MIR509-3 100126337 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 146341225 146341225 + RNA SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . . . . . TTGCCACGTCTGC . 1696 344 1460 2 . 0 0 0 0 0 FMR1 2332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 147030346 147030346 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FMR1-133 NM_001185075 exon16 c.C1610A p.S537X ACCACTCGTGAAT . 216 60 192 0 . 0 0 0 0 0 AFF2 2334 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 148049222 148049222 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . AFF2-135 NM_002025 exon15 c.G3267T p.L1089L TGCACTGGTAAGT . 77 28 65 0 . 0 0 0 0 0 IDS 3423 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 148582538 148582538 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IDS-130 NM_006123 exon4 c.C449A p.P150Q CTATACGGAGAAT . 90 26 83 0 . 0 0 0 0 0 MAGEA11 4110 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 148797322 148797322 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MAGEA11-132 NM_005366 exon4 c.C251A p.T84N GGATCACTGGAGG . 227 81 206 0 . 0 0 0 0 0 MAMLD1 10046 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 149639349 149639349 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MAMLD1-130 NM_005491 exon3 c.C1504A p.Q502K CAGCAGCAAGCAA . 294 104 250 0 . 0 0 0 0 0 MTM1 4534 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 149818249 149818249 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MTM1-228 NM_000252 exon10 c.G928C p.D310H TTCTTAGACATTC . 174 54 152 0 . 0 0 0 0 0 MTMR1 8776 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 149905230 149905230 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MTMR1-131 NM_003828 exon10 c.C1220A p.T407K ATGGGACGCATTG . 148 49 170 0 . 0 0 0 0 0 GPR50 9248 ucsc.edu;bcgsc.ca 37 X 150348568 150348568 + Nonsense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR50-176 NM_004224 exon2 c.C513G p.Y171X CGAGTACGATCCT . 274 97 251 3 . 0 0 0 0 0 GPR50 9248 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 150349375 150349375 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR50-176 NM_004224 exon2 c.G1320T p.K440N CCCTAAGCCTGCC . 152 53 118 0 . 0 0 0 0 0 FATE1 89885 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 150891194 150891194 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FATE1-131 NM_033085 exon5 c.C515G p.A172G TGTCGGCCAGCAT . 470 159 386 1 . 0 0 0 0 0 CNGA2 1260 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 150911588 150911588 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CNGA2-193 NM_005140 exon7 c.G613T p.V205F CTGCTGGTCAAAG . 205 65 240 1 . 0 0 0 0 0 CNGA2 1260 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 150911921 150911921 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CNGA2-193 NM_005140 exon7 c.G946T p.E316X GACCCTGAGTATG . 319 93 296 0 . 0 0 0 0 0 CNGA2 1260 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 150912769 150912769 + Silent SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CNGA2-193 NM_005140 exon7 c.G1794A p.Q598Q CGTGCAGGAGAAG . 172 65 180 0 . 0 0 0 0 0 MAGEA4 4103 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 151092271 151092271 + Silent SNP T T A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MAGEA4-194 NM_001011548 exon3 c.T135A p.P45P CTCTCCTCTGGTC . 409 134 316 0 . 0 0 0 0 0 PNMA5 114824 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 152159412 152159412 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PNMA5-131 NM_001103150 exon2 c.C731G p.S244C AACTGAGAGGCTC . 57 25 51 0 . 0 0 0 0 0 PNMA3 29944 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 152226512 152226512 + Missense_Mutation SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PNMA3-600 NM_013364 exon2 c.C1100T p.P367L CAGTACCTCTCCC . 179 53 169 0 . 0 0 0 0 0 PNMA3 29944 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 152226745 152226745 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PNMA3-600 NM_013364 exon2 c.G1333C p.E445Q GCAGTTGAGTCGG . 287 97 220 0 . 0 0 0 0 0 MAGEA1 4100 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 152482814 152482814 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MAGEA1-622 NM_004988 exon3 c.C197A p.T66N ATGGTAGTGGGAA . 419 100 358 0 . 0 0 0 0 0 TREX2 11219 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 152710779 152710779 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TREX2-227 NM_080701 exon2 c.G110T p.R37L GAGGAGCGGTGGA . 447 156 277 1 . 0 0 0 0 0 ATP2B3 492 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 152807877 152807877 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ATP2B3-109 NM_001001344 exon4 c.C761A p.S254X GCAAGTCAGCTGA . 298 114 205 1 . 0 0 0 0 0 ATP2B3 492 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 152823605 152823605 + Silent SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ATP2B3-109 NM_001001344 exon15 c.C2469A p.S823S GGCCTCCGACATC . 638 220 555 2 . 0 0 0 0 0 PNCK 139728 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 152936621 152936621 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PNCK-207 NM_001039582 exon8 c.C888A p.Y296X CTCGTCGTAGAAG . 103 34 109 0 . 0 0 0 0 0 SLC6A8 6535 hgsc.bcm.edu 37 X 152954055 152954055 + Missense_Mutation SNP G G A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC6A8-131 NM_005629 exon1 c.G26A p.G9D AGAACGGCATCTA . 12 7 0 0 . 0 0 0 0 0 SLC6A8 6535 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 152958807 152958807 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC6A8-131 NM_005629 exon6 c.C1002A p.N334K CTTCAACAACAAC . 361 121 269 0 . 0 0 0 0 0 PLXNB3 5365 hgsc.bcm.edu 37 X 153033266 153033266 + Missense_Mutation SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLXNB3-130 NM_001163257 exon4 c.G1053C p.Q351H GGAGCAGGCCCGG . 81 27 5 0 . 0 0 0 0 0 PLXNB3 5365 ucsc.edu;bcgsc.ca 37 X 153035684 153035684 + Silent SNP A A T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLXNB3-130 NM_001163257 exon9 c.A1836T p.P612P GGTGCCACTTAAC . 152 50 145 2 . 0 0 0 0 0 PLXNB3 5365 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 153036070 153036070 + Silent SNP C C A rs143446986 alternate_allele TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLXNB3-130 NM_001163257 exon11 c.C2052A p.G684G AGAGGGCGAGAGG . 301 97 240 1 C|1.000;T|0.000 0 0 0 0 0 PLXNB3 5365 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 153036423 153036423 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLXNB3-130 NM_001163257 exon13 c.C2209A p.L737M CAGGGCCTGCCTG . 333 119 263 1 . 0 0 0 0 0 PLXNB3 5365 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 153042416 153042416 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLXNB3-130 NM_001163257 exon30 c.G4977T p.Q1659H GGCCCAGAGGTGC . 330 128 311 0 . 0 0 0 0 0 IDH3G 3421 ucsc.edu;bcgsc.ca;mdanderson.org 37 X 153055722 153055722 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IDH3G-90 NM_004135 exon4 c.G161C p.R54P GTGTGCCGCCCGC . 311 82 309 1 . 0 0 0 0 0 L1CAM 3897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 153133825 153133825 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . L1CAM-138 NM_000425 exon13 c.C1635A p.P545P CAAGGAGGGGTCA . 318 123 270 0 . 0 0 0 0 0 HCFC1 3054 broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 153220099 153220099 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HCFC1-132 NM_005334 exon17 c.G3751T p.E1251X GGGGCTCCCCAGC . 147 59 42 1 . 0 0 0 0 0 HCFC1 3054 ucsc.edu;bcgsc.ca;mdanderson.org 37 X 153222835 153222835 + Silent SNP G G C rs2071134 byfrequency TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HCFC1-132 NM_005334 exon13 c.C2283G p.T761T GGGCTTGGTGGTA . 188 57 233 0 G|0.666;C|0.334 0 0 0 0 0 SLC10A3 8273 ucsc.edu;bcgsc.ca 37 X 153716005 153716005 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SLC10A3-132 NM_001142392 exon3 c.C1275A p.N425K CAGGCTGTTCTGC . 445 174 422 2 . 0 0 0 0 0 G6PD 2539 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 153762677 153762677 + Missense_Mutation SNP C C G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . G6PD-135 NM_000402 exon6 c.G610C p.G204R CCCTCCCGAAGGG . 164 72 161 1 . 0 0 0 0 0 GAB3 139716 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 153927602 153927602 + Missense_Mutation SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GAB3-227 NM_001081573 exon6 c.C1312A p.P438T TCACTGGGGGAGG . 172 65 129 0 . 0 0 0 0 0 DKC1 1736 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 154001499 154001499 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DKC1-227 NM_001363 exon11 c.C1130A p.P377H CTTACCCTCGGAA . 588 237 454 0 . 0 0 0 0 0 F8 2157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 154157538 154157538 + Silent SNP G G C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . F8-182 NM_000132 exon14 c.C4527G p.G1509G AACTTTGCCAGAT . 103 35 70 0 . 0 0 0 0 0 F8 2157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 154158316 154158316 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . F8-182 NM_000132 exon14 c.G3749T p.S1250I CTAGTGCTCAGTA . 64 26 52 0 . 0 0 0 0 0 F8 2157 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 154176151 154176151 + Silent SNP C C T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . F8-182 NM_000132 exon13 c.G1935A p.Q645Q TGACAACTGCAAA . 182 75 133 2 . 0 0 0 0 0 MTCP1 4515 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 154294183 154294183 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MTCP1-658 NM_001018025 exon2 c.G103T p.E35X TTACCTCTTCCAC . 81 28 70 3 . 0 0 0 0 0 IL9R 3581 ucsc.edu;bcgsc.ca 37 X 155235035 155235035 + Silent SNP G G T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IL9R-40 NM_176786 exon7 c.G777T p.L259L CAGGCTGCGTGTC . 684 245 550 4 . 0 0 0 0 0 IL9R 3581 bcgsc.ca 37 X 155239892 155239892 + Missense_Mutation SNP C C A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IL9R-40 NM_002186 exon9 c.C1384A p.Q462K AACACACAGAGCT . 332 65 336 1 . 0 0 0 0 0 PLCH2 9651 hgsc.bcm.edu 37 1 2430086 2430087 + In_Frame_Ins INS - - GTGGGGGCC rs142848828 by1000genomes TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLCH2-229 NM_014638 exon17 c.2349_2350insGTGGGGGCC p.E783delinsEVGA TGGGGAGGTGGGG . 36 14 21 0 . 0 0 0 0 0 MPL 4352 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 43818247 43818248 + Frame_Shift_Ins INS - - C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MPL-9885 NM_005373 exon12 c.1712_1713insC p.L571fs AAATCCTCCCCAA . 215 47 176 0 . 0 0 0 0 0 BRDT 676 hgsc.bcm.edu;bcgsc.ca 37 1 92447227 92447228 + In_Frame_Ins INS - - AGC novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BRDT-374 NM_001242806 exon12 c.1929_1930insAGC p.E643delinsES GAGTGAGAGCAGC . 348 132 281 0 . 0 0 0 0 0 CELSR2 1952 hgsc.bcm.edu 37 1 109792735 109792736 + In_Frame_Ins INS - - CGC rs144034706 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CELSR2-526 NM_001408 exon1 c.34_35insCGC p.T12delinsTP CTCCCAACGCCGC . 23 22 2 2 -|0.389;CGC|0.611 0 0 0 0 0 OR10X1 128367 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 158549352 158549353 + Frame_Shift_Ins INS - - A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR10X1-69 NM_001004477 exon1 c.338_339insT p.C113fs AAGCTACAACCTG . 563 61 370 0 . 0 0 0 0 0 PAX2 5076 hgsc.bcm.edu;bcgsc.ca 37 10 102509533 102509534 + Frame_Shift_Ins INS - - A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PAX2-90 NM_003987 exon2 c.74_75insA p.G25fs TCGGGGGGGTGTT . 114 30 59 0 . 0 0 0 0 0 PCGF6 84108 hgsc.bcm.edu 37 10 105110740 105110741 + In_Frame_Ins INS - - GGAGGC rs113359610 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PCGF6-226 NM_032154 exon1 c.84_85insGCCTCC p.P28delinsPPP GGAGACAGGAGGC . 21 15 0 0 -|0.590;GGAGGC|0.410 0 0 0 0 0 NLRP10 338322 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 7981838 7981839 + Frame_Shift_Ins INS - - T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NLRP10-209 NM_176821 exon2 c.1321_1322insA p.P441fs GCCTGGGGCCATC . 54 30 66 0 . 0 0 0 0 0 FAT3 120114 hgsc.bcm.edu;bcgsc.ca 37 11 92616454 92616455 + Frame_Shift_Ins INS - - G novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAT3-73 NM_001008781 exon23 c.12832_12833insG p.R4278fs GCCCGGCGGGGCG . 82 35 59 0 . 0 0 0 0 0 MED13L 23389 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 116444164 116444165 + Frame_Shift_Ins INS - - C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MED13L-232 NM_015335 exon12 c.2291_2292insG p.P764fs GGCACCGGCGTGG . 127 77 157 0 . 0 0 0 0 0 NCOR2 9612 broad.mit.edu 37 12 124824721 124824722 + In_Frame_Ins INS - - GCCGCTGCT rs143952466 bycluster;by1000genomes TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NCOR2-229 NM_006312 exon39 c.5518_5519insAGCAGCGGC p.G1840delinsSSGG CACCCCCGCCGCT . 57 31 4 0 . 0 0 0 0 0 CRAMP1L 57585 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 1706047 1706048 + Frame_Shift_Ins INS - - C novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_020825 exon9 c.1289_1290insC p.G430fs AGGGCGGCCGGTG . 141 59 55 0 . 0 0 0 0 0 KRTAP9-1 728318 hgsc.bcm.edu 37 17 39346616 39346617 + In_Frame_Ins INS - - AGCCTAGCTGTGGGTCCAGCTGCTGCC novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001190460 exon1 c.478_479insAGCCTAGCTGTGGGTCCAGCTGCTGCC p.Q160delinsQPSCGSSCCQ TGCTGCCAGCCTT . 186 0 93 0 . 0 0 0 0 0 EFTUD2 9343 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 42930702 42930703 + Frame_Shift_Ins INS - - TC novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EFTUD2-91 NM_004247 exon25 c.2523_2524insGA p.D841fs GACGCAATCTGCA . 109 43 117 0 . 0 0 0 0 0 KRTAP10-6 386674 broad.mit.edu 37 21 46012219 46012220 + In_Frame_Ins INS - - GGGGCGCAGCAGCTG novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KRTAP10-6-90 NM_198688 exon1 c.147_148insCAGCTGCTGCGCCCC p.P49delinsPSCCAP GGGGGCCGGGGCG . 105 16 25 0 . 0 0 0 0 0 NEFH 4744 broad.mit.edu 37 22 29885622 29885623 + In_Frame_Ins INS - - AGGAAG novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NEFH-90 NM_021076 exon4 c.1993_1994insAGGAAG p.K665delinsKEE CCTGAGAAGGCCA . 391 10 367 0 . 0 0 0 0 0 SHOX2 6474 hgsc.bcm.edu 37 3 157823581 157823582 + In_Frame_Ins INS - - CACCTCCTC novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . SHOX2-90 NM_001163678 exon1 c.233_234insGAGGAGGTG p.V78delinsGGGV CCTCCTACACCTC . 84 44 18 0 . 0 0 0 0 0 WDFY3 23001 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 85722990 85722991 + Frame_Shift_Ins INS - - A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . WDFY3-93 NM_014991 exon17 c.2635_2636insT p.A879fs TATTTGCCACGGC . 114 26 128 0 . 0 0 0 0 0 FYB 2533 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 39202214 39202215 + Frame_Shift_Ins INS - - T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FYB-24 NM_001243093 exon2 c.879_880insA p.K293fs ATCTTCCTTTTTT . 67 20 58 0 . 0 0 0 0 0 TNPO1 3842 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 72199544 72199545 + Frame_Shift_Ins INS - - T novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TNPO1-228 NM_002270 exon23 c.2523_2524insT p.I841fs TTTTATATTTTTT . 46 24 79 0 . 0 0 0 0 0 C6orf136 221545 hgsc.bcm.edu 37 6 30615190 30615191 + In_Frame_Ins INS - - GCG novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . C6orf136-90 NM_001161376 exon1 c.182_183insGCG p.P61delinsPR GACACCCGCCGCC . 41 16 4 0 . 0 0 0 0 0 GPR111 222611 broad.mit.edu;bcgsc.ca 37 6 47649793 47649794 + Frame_Shift_Ins INS - - A novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR111-91 NM_153839 exon7 c.1294_1295insA p.V432fs GCAGATGTGTGGT . 281 35 267 0 . 0 0 0 0 0 PODXL 5420 hgsc.bcm.edu 37 7 131241029 131241030 + In_Frame_Ins INS - - GGCGAC rs11277659 TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PODXL-136 NM_005397 exon1 c.90_91insGTCGCC p.P30delinsPSP CTGGGAGGGCGAC . 30 0 0 0 . 0 0 0 0 0 PTPRF 5792 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 44063549 44063550 + Missense_Mutation DNP GG GG AT novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 GG GG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PTPRF-232 NM_002840 exon12 c.G1945T p.V649L GAGGCGGTGGACG . 280 0 49 0 . 0 0 0 0 0 RGSL1 353299 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 182499425 182499426 + Missense_Mutation DNP CA CA AT novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CA CA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RGSL1-226 NM_001137669 exon12 c.A2173T p.M725L GCTTCCATGCGTC . 165 0 95 0 . 0 0 0 0 0 CACNA1S 779 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 201009798 201009799 + Missense_Mutation DNP CA CA AG novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CA CA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CACNA1S-94 NM_000069 exon42 c.T5177C p.L1726P TGGGTCAGCAGTC . 140 0 74 0 . 0 0 0 0 0 RYR2 6262 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 237954769 237954770 + Missense_Mutation DNP CC CC AA novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . RYR2-158 NM_001035 exon93 c.C13518A p.A4512E GTTAGCCTTATTT . 139 8 99 0 . 0 0 0 0 0 CTNNA3 29119 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 68139070 68139071 + Missense_Mutation DNP GG GG TT novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 GG GG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CTNNA3-234 NM_013266 exon12 c.C1571A p.A524E CTTAAGGCTATGA . 123 7 115 0 . 0 0 0 0 0 HMX2 3167 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 124907940 124907941 + Missense_Mutation DNP GG GG TT novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 GG GG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HMX2-90 NM_005519 exon1 c.G47T p.G16F CCGGTGGCGTCTC . 226 13 102 0 . 0 0 0 0 0 CPXM2 119587 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 125639753 125639754 + Missense_Mutation DNP CG CG AC novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CG CG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CPXM2-92 NM_198148 exon2 c.C376G p.R126V CCACACGGACACT . 138 0 91 0 . 0 0 0 0 0 OR4C6 219432 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 55433022 55433023 + Missense_Mutation DNP CC CC AA novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR4C6-70 NM_001004704 exon1 c.C381A p.P127Q TAAGCCCCTGCAC . 98 13 115 0 . 0 0 0 0 0 PDGFD 80310 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 103818443 103818444 + Nonsense_Mutation DNP GG GG AT novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 GG GG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PDGFD-723 NM_025208 exon4 c.C519A p.FQ173L* GGGTTGGAAATCT . 43 0 88 0 . 0 0 0 0 0 MYBPC1 4604 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 102055036 102055037 + Missense_Mutation DNP CC CC AA novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MYBPC1-94 NM_206819 exon20 c.C2029A p.L652I CCAATCCTAGGTA . 54 10 87 0 . 0 0 0 0 0 KLHL1 57626 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 70281793 70281794 + Missense_Mutation DNP CA CA AG novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CA CA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KLHL1-90 NM_020866 exon10 c.T2150C p.M717T GATTCCATAGTGT . 92 0 150 0 . 0 0 0 0 0 DACH1 1602 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 72063190 72063191 + Missense_Mutation DNP GG GG AT novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 GG GG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DACH1-135 NM_080759 exon7 c.C1666A p.P608I GAGATGGAAAACC . 56 0 110 0 . 0 0 0 0 0 EHD4 30844 broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 42246065 42246066 + Missense_Mutation DNP TC TC AT novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 TC TC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EHD4-92 NM_139265 exon2 c.G309A p.M104L ATACATCACGGCG . 60 0 90 0 . 0 0 0 0 0 ULK3 25989 broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 75132951 75132952 + Missense_Mutation DNP CC CC AA novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ULK3-290 NM_001099436 exon5 c.G500T p.W178F TCATCCCACGGGG . 143 5 154 0 . 0 0 0 0 0 TEKT5 146279 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 10769881 10769882 + Missense_Mutation DNP CC CC AA novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TEKT5-92 NM_144674 exon5 c.G1020T p.A341S GAAGGCCAGGTTG . 134 4 111 0 . 0 0 0 0 0 FAM65A 79567 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 67579578 67579579 + Missense_Mutation DNP CG CG TT novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CG CG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM65A-92 NM_001193523 exon19 c.G3263T p.R1088L TGGTGCGGAATCT . 118 21 141 0 . 0 0 0 0 0 CDRT15L2 256223 hgsc.bcm.edu 37 17 20483562 20483563 + Nonsense_Mutation DNP GG GG TT novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 GG GG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001190790 exon2 c.G367T p.EG122D* GTGGAGGGAGCTC . 194 6 184 0 . 0 0 0 0 0 PIPOX 51268 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 27383223 27383224 + Missense_Mutation DNP GG GG AA novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 GG GG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PIPOX-90 NM_016518 exon8 c.G1074A p.G358E GGTGGGGAAGATC . 104 12 133 0 . 0 0 0 0 0 ABCA5 23461 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 67285343 67285344 + Missense_Mutation DNP CC CC AG novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ABCA5-93 NM_018672 exon13 c.G1876C p.G626L CAATTCCTAATGA . 33 0 29 0 . 0 0 0 0 0 RBFOX3 146713 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 77111616 77111617 + Missense_Mutation DNP TC TC AA novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 TC TC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001082575 exon5 c.G181T p.E61L TGGCCTCGGAGCC . 22 2 26 0 . 0 0 0 0 0 TSHZ3 57616 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 31769009 31769010 + Missense_Mutation DNP GG GG CT novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 GG GG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TSHZ3-232 NM_020856 exon2 c.C1689A p.L564V GCCCAGGGACAAC . 156 0 211 0 . 0 0 0 0 0 MEIS1 4211 broad.mit.edu 37 2 66667049 66667050 + Missense_Mutation DNP GG GG TT novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 GG GG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . MEIS1-226 NM_002398 exon3 c.G315T p.G105V GCCGGGGGTGGCG . 47 1 54 0 . 0 0 0 0 0 LOXL3 84695 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 74761338 74761339 + Missense_Mutation DNP GG GG TT novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 GG GG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . LOXL3-226 NM_032603 exon12 c.C1964A p.A655E AAGTTGGCACACT . 190 2 204 0 . 0 0 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 179481738 179481739 + Missense_Mutation DNP CA CA TT novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CA CA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TTN-636 NM_001267550 exon256 c.T47877A p.E13392K TGGTTCAACTACA . 31 2 46 0 . 0 0 0 0 0 DNPEP 23549 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 220239604 220239605 + Missense_Mutation DNP TC TC AT novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 TC TC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DNPEP-90 NM_012100 exon14 c.G1379A p.G468D AGGACTCCTGTGG . 121 0 72 0 . 0 0 0 0 0 CHGB 1114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 5904314 5904315 + Missense_Mutation DNP CC CC AA novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . CHGB-96 NM_001819 exon4 c.C1525A p.H509N AGCTCCCATCACA . 90 3 124 0 . 0 0 0 0 0 LAMP5 24141 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 9510300 9510301 + Missense_Mutation DNP CC CC AA novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_012261 exon6 c.C677A p.P226K AATGCCCAGTGGA . 72 2 113 0 C|0.500;T|0.500 0 0 0 0 0 TMPRSS15 5651 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 19666953 19666954 + Missense_Mutation DNP CC CC AT novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TMPRSS15-160 NM_002772 exon20 c.G2277A p.D760Y GGAATCCTGTAAA . 227 0 277 0 . 0 0 0 0 0 KRTAP15-1 254950 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 31812927 31812928 + Missense_Mutation DNP CC CC AA novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . KRTAP15-1-90 NM_181623 exon1 c.C283A p.L95I AGATCCCTTGGAT . 119 35 107 0 . 0 0 0 0 0 TRH 7200 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 129695711 129695712 + Missense_Mutation DNP CG CG AA novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CG CG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TRH-91 NM_007117 exon3 c.G382A p.D128N TCAGTCGATGTAA . 188 5 189 0 . 0 0 0 0 0 COL6A5 256076 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 130159376 130159377 + Missense_Mutation DNP CC CC AA novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_153264 exon35 c.C6195A p.T2065K GTGGACCACTGAA . 146 30 126 0 . 0 0 0 0 0 TM4SF1 4071 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 149095253 149095254 + Missense_Mutation DNP GC GC TT novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 GC GC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . TM4SF1-90 NM_014220 exon1 c.G81A p.L28I GTAAAGCAAAATA . 241 30 276 0 . 0 0 0 0 0 GRIA2 2891 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 158281286 158281287 + Nonsense_Mutation DNP CC CC AG novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GRIA2-515 NM_000826 exon13 c.C2283G p.S761* AGGATCCTCATTA . 151 0 231 0 . 0 0 0 0 0 FAT1 2195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 187539244 187539245 + Missense_Mutation DNP CC CC AA novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAT1-34 NM_005245 exon10 c.G8495T p.R2834I GATGCCCTGATCT . 64 3 112 0 . 0 0 0 0 0 HCN1 348980 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 45262200 45262201 + Missense_Mutation DNP CC CC AA novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HCN1-91 NM_021072 exon8 c.G2495T p.R832I GTGCTCCTGCCCC . 70 7 44 0 C|0.999;G|0.000 0 0 0 0 0 HLA-DQB2 3120 broad.mit.edu;bcgsc.ca 37 6 32729575 32729576 + Missense_Mutation DNP GG GG CT novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 GG GG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001198858 exon2 c.C225A p.FQ75LE CGCCTGGAACTCC . 179 0 122 0 . 0 0 0 0 0 GPR111 222611 hgsc.bcm.edu 37 6 47649787 47649788 + Nonsense_Mutation DNP GC GC TG novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 GC GC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . GPR111-91 NM_153839 exon7 c.C1289G p.A498* TGATGGCAGATGT . 276 0 264 0 . 0 0 0 0 0 ICA1 3382 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 8258073 8258074 + Missense_Mutation DNP CC CC AA novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ICA1-515 NM_022307 exon6 c.G440T p.R147L ATGGCCCGATGCC . 89 7 123 0 . 0 0 0 0 0 THSD7A 221981 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 7 11419314 11419315 + Missense_Mutation DNP AG AG CA novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 AG AG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . THSD7A-71 NM_015204 exon24 c.C4532T p.P1511L GCATCAGGCTGGC . 86 0 127 0 . 0 0 0 0 0 ADCY1 107 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 45697346 45697347 + Missense_Mutation DNP AG AG GA novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 AG AG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . ADCY1-95 NM_021116 exon6 c.G1170A p.E390G CACCGAGGTGGAT . 136 0 200 0 . 0 0 0 0 0 HGF 3082 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 81359060 81359061 + Nonsense_Mutation DNP CC CC AA novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . HGF-516 NM_000601 exon8 c.G900T p.LE300F* TGTTTCCAAAGGA . 59 4 94 0 . 0 0 0 0 0 EPO 2056 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 100320745 100320746 + Missense_Mutation DNP GG GG AT novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 GG GG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . EPO-514 NM_000799 exon5 c.G572T p.G191M GGACAGGGGACAG . 167 0 135 0 . 0 0 0 0 0 PLOD3 8985 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 100855544 100855545 + Missense_Mutation DNP CC CC AT novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . PLOD3-92 NM_001084 exon10 c.G1116A p.D373Y CATGTCCCTGGCC . 162 0 104 0 . 0 0 0 0 0 DENND2A 27147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 140269463 140269464 + Nonsense_Mutation DNP CC CC AA novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DENND2A-138 NM_015689 exon5 c.G1521T p.ME507I* GCTCTCCATTGAC . 95 4 56 0 . 0 0 0 0 0 FAM115A 9747 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 143573262 143573263 + Missense_Mutation DNP CC CC AA novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . FAM115A-68 NM_001206938 exon2 c.G439T p.G147F GCAAGCCGCCACC . 187 12 132 0 C|0.999;T|0.001 0 0 0 0 0 DMD 1756 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 32360319 32360320 + Missense_Mutation DNP CC CC AA novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DMD-265 NM_004006 exon41 c.G5819T p.G1940V GCGGCCCCATCCT . 179 9 195 0 . 0 0 0 0 0 RBMXL3 139804 ucsc.edu;bcgsc.ca;mdanderson.org 37 X 114425745 114425746 + Missense_Mutation DNP CA CA TG novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CA CA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . . NM_001145346 exon1 c.A1742G p.Q581W CCAGCCAGAGCAA . 294 0 207 0 . 0 0 0 0 0 NKRF 55922 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 118723961 118723962 + Missense_Mutation DNP AG AG TT novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 AG AG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . NKRF-131 NM_001173487 exon4 c.C1471A p.L491N AGCGGAGGCCTGT . 54 5 48 0 . 0 0 0 0 0 BCORL1 63035 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 129147234 129147235 + Missense_Mutation DNP GG GG TT novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 GG GG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . BCORL1-294 NM_021946 exon3 c.G487T p.LD162FY GCTTTGGACTCTC . 237 10 208 0 . 0 0 0 0 0 OR13H1 347468 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 130678317 130678318 + Missense_Mutation DNP CT CT AA novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 CT CT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . OR13H1-108 NM_001004486 exon1 c.T271A p.Y91N CATCCCTACCTCT . 185 10 204 0 . 0 0 0 0 0 DDX26B 203522 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 134679497 134679498 + Splice_Site DNP GG GG TT novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 GG GG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . DDX26B-226 NM_182540 exon3 c.339+1G>T . GGACAGGTAAAAA . 87 2 113 0 . 0 0 0 0 0 IL9R 3581 broad.mit.edu;bcgsc.ca 37 X 155239857 155239858 + Missense_Mutation DNP GG GG TT novel TCGA-OR-A5KB-01A-11D-A30A-10 TCGA-OR-A5KB-11A-11D-A30A-10 GG GG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx 345f8ed2-85e0-4e5d-ab6e-2927776208ea 589759bc-d52f-438a-a57d-8498c9c9929c . IL9R-40 NM_002186 exon9 c.G1350T p.G450V CTATGGGGGATGG . 360 20 336 0 . 0 0 0 0 0