Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
NOL9	79707	hgsc.bcm.edu	37	1	6614391	6614391	+	Missense_Mutation	SNP	A	A	C	rs6693391	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NOL9-515	NM_024654	exon1	c.T172G	p.S58A	CGCCGGACGCCTG	.	6	6	0	0	A|0.047;C|0.953	0	0	0	0	0
PINK1	65018	hgsc.bcm.edu	37	1	20960230	20960230	+	Silent	SNP	C	C	T	rs45530340	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PINK1-380	NM_032409	exon1	c.C189T	p.L63L	CGGGCTCCCTAAC	.	6	6	0	0	C|0.868;T|0.132	2	0	2	0	0
C1QC	714	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22973845	22973845	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C1QC-90	NM_001114101	exon3	c.G307C	p.G103R	CCCATGGGCATCC	.	52	5	45	1	.	42	41	0	1	0
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34099087	34099087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CSMD2-103	NM_052896	exon32	c.T5015C	p.V1672A	ACCTCCACCACGT	.	180	76	153	0	.	0	0	0	0	0
KIF2C	11004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45227628	45227628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KIF2C-228	NM_006845	exon17	c.C1724T	p.T575I	AATATACTTTAAA	.	153	61	170	0	.	8	2	6	0	0
TCTEX1D4	343521	hgsc.bcm.edu	37	1	45271828	45271828	+	Silent	SNP	T	T	C	rs17885815	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TCTEX1D4-91	NM_001013632	exon2	c.A513G	p.V171V	ACTGCATACCAGC	.	10	10	0	0	T|0.859;C|0.141	0	0	0	0	0
CYP4A22	284541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47611785	47611785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CYP4A22-139	NM_001010969	exon11	c.C1324A	p.Q442K	TCTGCTCAACACA	.	286	36	270	0	.	0	0	0	0	0
RSBN1	54665	hgsc.bcm.edu	37	1	114354654	114354654	+	Silent	SNP	T	T	C	rs3195954	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RSBN1-91	NM_018364	exon1	c.A381G	p.P127P	ATTCGTTGGCGGC	.	16	15	0	0	T|0.861;C|0.139	1	0	1	0	0
HMGCS2	3158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	120295286	120295286	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	HMGCS2-92	NM_005518	exon8	c.G1306C	p.D436H	ACTTGTCCAGGGG	.	178	24	198	0	.	0	0	0	0	0
THEM4	117145	hgsc.bcm.edu	37	1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	rs3748805		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	THEM4-522	NM_053055	exon1	c.T50G	p.L17R	GGCGGCAGGCACA	.	8	8	0	0	T|0.073;G|0.921	7	0	7	0	0
LOR	4014	hgsc.bcm.edu	37	1	153233578	153233578	+	Silent	SNP	C	C	T	rs1143389	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	LOR-90	NM_000427	exon2	c.C153T	p.C51C	TGGCTGCGGCTAC	.	7	7	0	0	C|0.818;T|0.182	0	0	0	0	0
LOR	4014	hgsc.bcm.edu	37	1	153233701	153233701	+	Silent	SNP	A	A	C	rs1143390	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	LOR-90	NM_000427	exon2	c.A276C	p.G92G	CTCCGGAGGCGGC	.	4	4	0	0	A|0.594;C|0.406	0	0	0	0	0
KCNN3	3782	hgsc.bcm.edu	37	1	154842252	154842252	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KCNN3-91	NM_001204087	exon1	c.T189G	p.P63P	CTGCGGAGGCTGA	.	64	7	3	0	.	0	0	0	0	0
HCN3	57657	broad.mit.edu	37	1	155257913	155257913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	HCN3-154	NM_020897	exon8	c.G1984T	p.A662S	GTCCGAGCTGGCC	.	114	8	23	1	.	4	4	0	0	0
CCT3	7203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156303393	156303393	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CCT3-92	NM_005998	exon5	c.T249A	p.I83I	CCGGCTAATTTCG	.	85	26	50	0	.	433	338	94	0	1
OLFML2B	25903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161954657	161954657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	OLFML2B-69	NM_015441	exon7	c.G1588A	p.V530I	TGGTTACGTAAAT	.	394	88	298	0	.	3	3	0	0	0
SELL	6402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	169672445	169672445	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SELL-90	NM_000655	exon6	c.C942G	p.T314T	ACAAATGGTTTTC	.	269	61	144	0	.	0	0	0	0	0
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179983496	179983496	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CEP350-26	NM_014810	exon10	c.G1908C	p.Q636H	GAAGCAGAAGGAA	.	228	49	139	0	.	4	3	1	0	0
PTGS2	5743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186646810	186646810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PTGS2-227	NM_000963	exon5	c.C610T	p.P204S	AAGCTGGCCCTCG	.	189	59	82	0	.	0	0	0	0	0
PTPRC	5788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	198711467	198711467	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PTPRC-295	NM_002838	exon25	c.C2668A	p.R890R	CTAAGGCGACAGA	.	351	76	232	0	.	0	0	0	0	0
TRAF3IP3	80342	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	209948701	209948701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TRAF3IP3-291	NM_025228	exon10	c.C782A	p.S261Y	AATACTCCCCTTG	.	334	88	210	2	.	0	0	0	0	0
DTL	51514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	212245552	212245552	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DTL-22	NM_016448	exon11	c.G1032A	p.W344X	CATATGGAAGGTA	.	173	46	122	0	.	0	0	0	0	0
EPRS	2058	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220219731	220219731	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	EPRS-92	.	.	.	.	CGCCATCTCCACC	.	300	74	125	0	.	14	9	5	0	0
ITPKB	3707	broad.mit.edu	37	1	226924876	226924884	+	In_Frame_Del	DEL	CTGCCGCTG	CTGCCGCTG	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ITPKB-230	NM_002221	exon2	c.276_284del	p.92_95del	ACGCTACTGCCGC	.	59	17	6	0	.	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	37	20	0	0	C|0.643;T|0.357	0	0	0	0	0
OR2T33	391195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248437020	248437020	+	Missense_Mutation	SNP	C	C	T	rs138653777		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	OR2T33-114	NM_001004695	exon1	c.G97A	p.V33I	TCAAAACGATACT	.	1014	374	633	2	C|1.000;T|0.000	0	0	0	0	0
PRKCQ	5588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	6533734	6533734	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PRKCQ-1380	NM_006257	exon8	c.T701A	p.F234Y	ACTTTAAATCTGT	.	164	32	110	0	.	0	0	0	0	0
ECHDC3	79746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	11805518	11805518	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ECHDC3-90	NM_024693	exon5	c.C887G	p.P296R	GAAAACCTGTCTG	.	16	8	10	0	.	0	0	0	0	0
LYZL1	84569	ucsc.edu;bcgsc.ca	37	10	29581490	29581490	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	LYZL1-90	NM_032517	exon3	c.C320G	p.A107G	CCACAGCCCAGAC	.	376	360	260	3	.	0	0	0	0	0
GPRIN2	9721	ucsc.edu	37	10	46999601	46999601	+	Missense_Mutation	SNP	G	G	A	rs9422022	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	GPRIN2-90	NM_014696	exon3	c.G721A	p.V241M	AGGGAGGTGAGGG	.	155	23	103	0	G|0.639;A|0.361	0	0	0	0	0
ERCC6	2074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50714007	50714007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ERCC6-1153	NM_000124	exon6	c.G1449T	p.M483I	ATCGTCCTCCAGC	.	41	13	48	0	.	0	0	0	0	0
PGBD3	267004	broad.mit.edu;bcgsc.ca	37	10	50723715	50723715	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PGBD3-109	NM_170753	exon2	c.A1446T	p.I482I	TGAATACCATTTC	.	62	18	55	1	.	2	2	0	0	0
HECTD2	143279	hgsc.bcm.edu	37	10	93170250	93170250	+	Missense_Mutation	SNP	C	C	G	rs7081569	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	HECTD2-658	NM_182765	exon1	c.C55G	p.P19A	GCGGCGCCCGCGC	.	7	7	0	0	C|0.154;G|0.846	1	0	1	0	0
NDUFB8	4714	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	102289594	102289594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NDUFB8-90	NM_005004	exon1	c.G15T	p.R5S	CCCGGCCCTGGCC	.	188	118	90	0	.	271	109	161	1	0
C10orf95	79946	hgsc.bcm.edu	37	10	104210735	104210735	+	Missense_Mutation	SNP	C	C	A	rs2281878	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C10orf95-91	NM_024886	exon2	c.G253T	p.A85S	CGGAAGCTGTGGG	.	8	8	0	0	C|0.759;A|0.241	2	0	2	0	0
C10orf90	118611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	128193343	128193343	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C10orf90-92	NM_001004298	exon3	c.C426T	p.I142I	GGCCGTGATGGTG	.	15	5	14	0	.	0	0	0	0	0
C11orf35	256329	hgsc.bcm.edu	37	11	556063	556063	+	Missense_Mutation	SNP	C	C	T	rs144614541		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C11orf35-69	NM_173573	exon11	c.G1310A	p.S437N	TCCCGGCTCGAGG	.	8	8	0	0	C|0.968;T|0.032	3	0	3	0	0
IRF7	3665	hgsc.bcm.edu	37	11	615103	615103	+	Silent	SNP	G	G	A	rs113083699		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	IRF7-90	NM_004031	exon1	c.C216T	p.I72I	CTTGAAGATGCGC	.	13	12	0	0	G|0.949;A|0.051	0	0	0	0	0
MUC2	4583	bcgsc.ca	37	11	1092884	1092884	+	Missense_Mutation	SNP	C	C	T	rs201415503		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MUC2-90	NM_002457	exon30	c.C4703T	p.T1568M	CCACCACGGTGAC	.	247	7	179	2	.	0	0	0	0	0
MUC2	4583	bcgsc.ca	37	11	1093295	1093295	+	Missense_Mutation	SNP	C	C	T	rs200145328	alternate_allele	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MUC2-90	NM_002457	exon30	c.C5114T	p.T1705I	CCACCACTACGGT	.	114	8	145	2	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	143	15	32	0	.	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266696	1266696	+	Silent	SNP	A	A	C	rs4046509	bycluster;byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_002458	exon31	c.A8586C	p.P2862P	GGCCCCAATAACC	.	98	84	147	2	A|0.500;C|0.500	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266716	1266716	+	Missense_Mutation	SNP	T	T	C	rs80150964		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_002458	exon31	c.T8606C	p.M2869T	TGACCATGGGCTG	.	88	41	172	0	C|1.000;|0.000	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1272245	1272245	+	Missense_Mutation	SNP	C	C	T	rs2943511	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_002458	exon31	c.C14135T	p.T4712M	CCAGCACGGCCAC	.	813	20	735	4	C|0.930;T|0.070	0	0	0	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651158	1651169	+	In_Frame_Del	DEL	GGCTGTGGCTCT	GGCTGTGGCTCT	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KRTAP5-5-23	NM_001001480	exon1	c.88_99del	p.30_33del	TGTGGAGGCTGTG	.	149	12	19	0	.	0	0	0	0	0
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651229	1651229	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KRTAP5-5-23	NM_001001480	exon1	c.G159A	p.A53A	CTGTGCGGGCTGT	.	115	12	60	0	.	0	0	0	0	0
MRGPRE	116534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	3250000	3250000	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MRGPRE-136	NM_001039165	exon2	c.C30T	p.H10H	CCCCACGTGCTGT	.	60	55	41	0	.	0	0	0	0	0
OR51A4	401666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4967624	4967624	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	OR51A4-71	NM_001005329	exon1	c.T707G	p.L236R	GCCTTAAGCTGCT	.	718	333	872	0	.	0	0	0	0	0
MICALCL	84953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	12315183	12315183	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MICALCL-91	NM_032867	exon3	c.G205C	p.A69P	AGGCGAGCCGTAG	.	109	55	119	0	.	0	0	0	0	0
KCNK7	10089	broad.mit.edu;bcgsc.ca	37	11	65360508	65360508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KCNK7-90	NM_033347	exon3	c.G892A	p.A298T	CTGGGGCCGCGGG	.	98	6	103	0	.	0	0	0	0	0
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810209	65810209	+	Silent	SNP	C	C	T	rs61895584	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	GAL3ST3-91	NM_033036	exon3	c.G1065A	p.P355P	CTGCCACGGCTGC	.	8	8	0	0	C|0.233;T|0.767	0	0	0	0	0
INPPL1	3636	broad.mit.edu	37	11	71949087	71949087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	INPPL1-660	NM_001567	exon27	c.C3554A	p.A1185D	CTTAGGCTCCGTG	.	41	9	11	0	.	0	0	0	0	0
FAM181B	220382	hgsc.bcm.edu	37	11	82443696	82443696	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FAM181B-135	NM_175885	exon1	c.1076delA	p.D359fs	GGAGAATCCGCAG	.	13	11	0	0	.	0	0	0	0	0
SYTL2	54843	broad.mit.edu	37	11	85435193	85435193	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SYTL2-137	NM_206927	exon1	c.G2307C	p.L769F	TAGAGTCAATTCA	.	41	3	75	0	.	7	7	0	0	0
NCAM1	4684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	113103921	113103921	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NCAM1-23	NM_001242607	exon15	c.C1653G	p.A551A	CACAGCCCAGGTG	.	285	123	222	0	.	27	9	18	0	0
BACE1	23621	hgsc.bcm.edu	37	11	117186506	117186506	+	Silent	SNP	G	G	A	rs28917234	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	BACE1-91	NM_138972	exon1	c.C6T	p.A2A	GGCTTGGGCCATG	.	25	24	2	0	G|0.979;A|0.021	8	0	8	0	0
BLID	414899	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	121986666	121986666	+	RNA	SNP	A	A	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	.	.	.	.	AAATTTAACTTCC	.	77	34	134	1	.	0	0	0	0	0
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2910398	2910398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FKBP4-226	NM_002014	exon9	c.A1148G	p.Y383C	AGCTCTACCCCAA	.	147	89	133	0	.	298	116	182	0	0
KRT7	3855	hgsc.bcm.edu	37	12	52627215	52627215	+	Silent	SNP	A	A	G	rs7308888	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KRT7-90	NM_005556	exon1	c.A135G	p.S45S	CGCCTCACGGCCG	.	16	16	0	0	A|0.133;G|0.867	0	0	0	0	0
CSAD	51380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53555170	53555170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CSAD-91	NM_015989	exon11	c.G787A	p.A263T	GCACAGCACCCTG	.	356	99	213	0	.	0	0	0	0	0
NFE2	4778	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54686192	54686192	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NFE2-226	NM_001261461	exon4	c.T1088C	p.V363A	CGGGGCACAAGGA	.	259	84	177	1	.	0	0	0	0	0
ESYT1	23344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56522161	56522161	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ESYT1-95	NM_015292	exon1	c.C58G	p.P20A	TCTGCTCCCTCCG	.	76	17	13	0	.	51	43	8	0	0
BAZ2A	11176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57005765	57005765	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	BAZ2A-22	NM_013449	exon6	c.C1407T	p.V469V	TGGAGAGACCACT	.	359	44	108	0	.	114	49	65	0	0
SLC16A7	9194	broad.mit.edu;bcgsc.ca	37	12	60165060	60165060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SLC16A7-91	NM_001270622	exon4	c.G278T	p.G93V	CAGGAGGCTTATT	.	720	47	261	1	.	2	2	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	19	19	0	0	A|0.273;G|0.727	1	0	1	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	AMDHD1-90	NM_152435	exon1	c.C49T	p.L17L	GTGGTGCTGGTGT	.	27	27	0	0	C|0.752;T|0.248	1	0	1	0	0
FAM109A	144717	hgsc.bcm.edu	37	12	111800827	111800835	+	In_Frame_Del	DEL	GCCACCCCC	GCCACCCCC	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	GCCACCCCC	GCCACCCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FAM109A-90	NM_001177996	exon4	c.436_444del	p.146_148del	GGCCATGCCACCC	.	16	14	0	0	.	0	0	0	0	0
HECTD4	283450	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112600907	112600907	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_001109662	exon75	c.T12657G	p.G4219G	GTCGGGACCCCCA	.	415	117	252	3	.	7	5	2	0	0
LINC00173	100287569	ucsc.edu;bcgsc.ca	37	12	116972579	116972579	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	.	.	.	.	CAGGAAAAGGACA	.	308	182	174	3	.	1	0	1	0	0
FBRSL1	57666	broad.mit.edu;bcgsc.ca	37	12	133158326	133158326	+	Splice_Site	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FBRSL1-70	NM_001142641	exon15	c.2042-1G>C	.	CCCACAGACCCTT	.	325	9	100	0	.	0	0	0	0	0
ATP8A2	51761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	26138139	26138139	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ATP8A2-138	NM_016529	exon16	c.C1443A	p.P481P	TGACCCCAGGCTG	.	92	36	78	0	.	0	0	0	0	0
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36410236	36410236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DCLK1-826	NM_004734	exon8	c.A1163G	p.E388G	TATCGTTCTGTTA	.	128	47	158	0	.	0	0	0	0	0
MYO16	23026	hgsc.bcm.edu	37	13	109792825	109792825	+	Missense_Mutation	SNP	C	C	T	rs199777754		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MYO16-142	NM_001198950	exon32	c.C4265T	p.A1422V	CGGCGGCGCCTCC	.	4	4	0	0	.	0	0	0	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	8	8	0	0	C|0.372;T|0.628	5	0	5	0	0
DDHD1	80821	hgsc.bcm.edu	37	14	53619681	53619681	+	Missense_Mutation	SNP	C	C	T	rs61985140		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DDHD1-92	NM_001160147	exon1	c.G136A	p.G46S	CCCCGCCGGGCAG	.	48	37	2	0	C|0.993;T|0.007	1	0	1	0	0
EXD2	55218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	69704629	69704629	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_001193361	exon8	c.G1630C	p.A544P	CAAGAGGCTGCCA	.	255	68	182	0	.	6	2	4	0	0
ADAM21	8747	ucsc.edu	37	14	70924602	70924602	+	Missense_Mutation	SNP	T	T	G	rs72735759	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ADAM21-92	NM_003813	exon2	c.T386G	p.F129C	CTTGTTTTGGGGG	.	74	16	85	5	T|0.837;G|0.164	0	0	0	0	0
ADAM21	8747	ucsc.edu;bcgsc.ca	37	14	70924643	70924643	+	Missense_Mutation	SNP	T	T	C	rs78114303	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ADAM21-92	NM_003813	exon2	c.T427C	p.Y143H	CTCACTTATGAAA	.	45	11	53	1	T|0.987;C|0.013	0	0	0	0	0
ISM2	145501	hgsc.bcm.edu	37	14	77965094	77965094	+	Silent	SNP	G	G	A	rs12431905	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ISM2-91	NM_199296	exon1	c.C43T	p.L15L	GCAGCAGCACGCA	.	11	7	0	0	G|0.934;A|0.066	1	0	1	0	0
BCL11B	64919	hgsc.bcm.edu	37	14	99641147	99641147	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	BCL11B-1147	NM_138576	exon4	c.C2026T	p.L676L	TGGGCAGCGGCGC	.	25	11	0	0	.	0	0	0	0	0
CYP46A1	10858	bcgsc.ca	37	14	100157470	100157470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CYP46A1-90	NM_006668	exon2	c.C172T	p.R58C	GGTGGCCGTGTGC	.	325	12	225	2	.	0	0	0	0	0
YY1	7528	hgsc.bcm.edu	37	14	100705788	100705790	+	In_Frame_Del	DEL	CCA	CCA	-	rs76675246	alternate_allele	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	CCA	CCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	YY1-226	NM_003403	exon1	c.207_209del	p.69_70del	CGCCGGCCACCAC	.	32	23	2	1	.	0	0	0	0	0
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	101348688	101348688	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RTL1-46	NM_001134888	exon1	c.T2438A	p.I813N	AATTCGATGAAGT	.	138	34	116	0	.	0	0	0	0	0
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	101349080	101349080	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RTL1-46	NM_001134888	exon1	c.C2046T	p.T682T	ATCTTCGGTGCGG	.	233	70	153	0	.	0	0	0	0	0
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	34064256	34064256	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RYR3-520	NM_001243996	exon63	c.A8952T	p.K2984N	GATTAAAGGCGTT	.	74	68	169	1	.	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	6	6	0	0	A|0.226;C|0.774	0	0	0	0	0
SKOR1	390598	hgsc.bcm.edu	37	15	68120014	68120014	+	Silent	SNP	C	C	T	rs62015251		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SKOR1-90	NM_001258024	exon7	c.C1668T	p.Y556Y	GGCGTACGGCGCG	.	10	8	1	0	C|0.908;T|0.092	0	0	0	0	0
FANCI	55215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89790933	89790933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FANCI-92	NM_001113378	exon2	c.G55A	p.E19K	CTGCAAGAATTTC	.	65	25	88	0	.	1	0	1	0	0
KIF7	374654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90176983	90176983	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KIF7-523	NM_198525	exon12	c.T2526C	p.L842L	CTCGCGAAGCCGC	.	85	36	29	0	.	3	2	1	0	0
ZNF710	374655	hgsc.bcm.edu	37	15	90610914	90610914	+	Missense_Mutation	SNP	T	T	G	rs201968429	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZNF710-90	NM_198526	exon2	c.T545G	p.L182R	CGGAGCTGAACGT	.	23	14	2	0	T|0.998;G|0.002	6	5	1	0	0
C16orf11	146325	hgsc.bcm.edu	37	16	614727	614727	+	Missense_Mutation	SNP	G	G	A	rs200682205		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C16orf11-23	NM_145270	exon3	c.G1136A	p.G379D	CAGGCGGCCCTGA	.	14	8	0	0	.	0	0	0	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	10	10	0	0	C|0.615;G|0.385	0	0	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	12	12	0	0	T|0.007;C|0.993	6	0	6	0	0
SLC9A3R2	9351	hgsc.bcm.edu	37	16	2086500	2086500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SLC9A3R2-23	NM_004785	exon3	c.T590C	p.I197T	GGCTCATTGAGGT	.	96	27	4	0	.	0	0	0	0	0
MGRN1	23295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4731691	4731691	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MGRN1-92	NM_015246	exon13	c.C1272T	p.S424S	CCTGTCCCAGGCC	.	121	73	58	0	.	45	17	28	0	0
PDILT	204474	broad.mit.edu	37	16	20410472	20410472	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PDILT-153	NM_174924	exon2	c.151delG	p.A51fs	GGCCAGCGGGCGT	.	287	21	174	0	.	0	0	0	0	0
PRKCB	5579	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	23847557	23847557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PRKCB-1530	NM_212535	exon1	c.G61T	p.A21S	CGCTTCGCCCGCA	.	345	134	73	0	.	0	0	0	0	0
CACNG3	10368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24268165	24268165	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CACNG3-90	NM_006539	exon1	c.G90A	p.T30T	GGGCACGGACTAC	.	244	62	200	0	.	0	0	0	0	0
ITGAM	3684	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	31288327	31288327	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ITGAM-226	NM_000632	exon11	c.C1170T	p.I390I	CTTCATCAACATG	.	161	14	127	0	.	0	0	0	0	0
ABCC11	85320	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48201459	48201459	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ABCC11-95	NM_033151	exon28	c.G4004C	p.R1335P	GTGACACGGTGGG	.	446	127	272	1	.	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	6	6	0	0	G|0.001;A|0.999	0	0	0	0	0
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	76555137	76555137	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CNTNAP4-70	NM_138994	exon15	c.G2247C	p.K749N	TTTTAAGACAACA	.	35	7	32	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	16	0	0	0	.	0	0	0	0	0
RPL13	6137	hgsc.bcm.edu	37	16	89627671	89627671	+	Silent	SNP	C	C	T	rs174035	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RPL13-90	NM_001243131	exon3	c.C141T	p.A47A	CATCGCCCCGCGC	.	8	7	0	0	C|0.846;T|0.154	2143	1256	882	2	3
ZZEF1	23140	hgsc.bcm.edu	37	17	4046101	4046101	+	Missense_Mutation	SNP	A	A	G	rs1454121		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZZEF1-93	NM_015113	exon1	c.T89C	p.V30A	CCCGAGACCGCGG	.	9	9	0	0	A|0.188;G|0.812	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	GLTPD2-68	NM_001014985	exon4	c.C627A	p.D209E	CCCGGACGCGGGC	.	6	6	0	0	C|0.015;A|0.985	0	0	0	0	0
MYH8	4626	bcgsc.ca	37	17	10296486	10296486	+	Silent	SNP	G	G	A	rs33969260	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MYH8-101	NM_002472	exon36	c.C5208T	p.D1736D	GGAAACGTCATTT	.	96	5	143	0	G|0.826;A|0.174	0	0	0	0	0
C17orf96	100170841	hgsc.bcm.edu	37	17	36830562	36830562	+	Missense_Mutation	SNP	G	G	C	rs79676758		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_001130677	exon1	c.C187G	p.L63V	CCGCCAGCTCCCC	.	7	7	1	0	G|0.824;C|0.176	2	0	2	0	0
IGFBP4	3487	hgsc.bcm.edu	37	17	38600092	38600092	+	Silent	SNP	G	G	A	rs598892	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	IGFBP4-522	NM_001552	exon1	c.G105A	p.L35L	GAAGCTGGCGCGC	.	16	16	0	0	G|0.645;A|0.355	1	0	1	0	0
KRTAP4-7	100132476	broad.mit.edu	37	17	39240729	39240729	+	Missense_Mutation	SNP	A	A	G	rs200532954		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_033061	exon1	c.A271G	p.M91V	TGCTGTATGTCCA	.	122	14	47	0	.	0	0	0	0	0
KRTAP4-6	81871	ucsc.edu	37	17	39296422	39296422	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_030976	exon1	c.T318C	p.R106R	GCTGGGACGGCAG	.	253	42	82	1	.	0	0	0	0	0
CNTD1	124817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40957779	40957779	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CNTD1-90	NM_173478	exon4	c.C457G	p.L153V	CAGGCTCTAGGCT	.	60	37	87	0	.	0	0	0	0	0
PTGES3L-AARSD1	100885850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	41105767	41105767	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_001136042	exon15	c.A1504C	p.I502L	CAATGATATTCAT	.	151	16	126	0	.	20	18	2	0	0
EPN3	55040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48614027	48614027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	EPN3-91	NM_017957	exon2	c.G110T	p.S37I	CCCCTAGTTCGCT	.	130	109	129	1	.	0	0	0	0	0
EPN3	55040	bcgsc.ca	37	17	48619272	48619272	+	Silent	SNP	G	G	A	rs111678638	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	EPN3-91	NM_017957	exon10	c.G1653A	p.Q551Q	AAACCAGATGCGC	.	22	22	9	0	G|0.933;A|0.067	0	0	0	0	0
EPN3	55040	hgsc.bcm.edu	37	17	48619290	48619290	+	Silent	SNP	G	G	A	rs112657244	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	EPN3-91	NM_017957	exon10	c.G1671A	p.P557P	CTCGCCGGCGCTG	.	13	12	0	0	G|0.946;A|0.054	0	0	0	0	0
C17orf70	80233	broad.mit.edu;bcgsc.ca	37	17	79517591	79517591	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C17orf70-92	NM_025161	exon3	c.929delA	p.D310fs	AGGCAGTCACAGT	.	74	9	75	0	.	0	0	0	0	0
COLEC12	81035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	346782	346782	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	COLEC12-92	NM_130386	exon5	c.C840T	p.N280N	GGTGTCGTTGTTG	.	65	20	67	0	.	0	0	0	0	0
SMAD7	4092	hgsc.bcm.edu	37	18	46476680	46476680	+	Missense_Mutation	SNP	C	C	T	rs144204026		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SMAD7-414	NM_005904	exon1	c.G115A	p.G39R	CTTCTCCCCGCAG	.	75	50	3	0	C|0.996;T|0.004	5	2	3	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76753768	76753768	+	Missense_Mutation	SNP	C	C	G	rs2447437	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SALL3-155	NM_171999	exon2	c.C1777G	p.L593V	CCGCCCCTCACTA	.	6	6	0	0	C|0.780;G|0.220	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929678	929678	+	Silent	SNP	G	G	A	rs3826948		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ARID3A-90	NM_005224	exon2	c.G150A	p.E50E	GCCCGAGAGTGCC	.	4	4	0	0	T|0.495;C|0.504	2	0	2	0	0
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	1046951	1046951	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ABCA7-98	NM_019112	exon14	c.C1773T	p.L591L	GGTGCTCTGGCTA	.	634	89	11	0	.	6	3	3	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TCF3-721	NM_003200	exon15	c.A1302G	p.S434S	GCCCAGTGACATG	.	16	6	0	0	T|0.403;C|0.597	77	38	39	0	0
ANKRD24	170961	hgsc.bcm.edu	37	19	4217956	4217956	+	Silent	SNP	A	A	G	rs6510794	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ANKRD24-68	NM_133475	exon18	c.A2799G	p.A933A	CCGGGCAGCCAGT	.	11	4	0	0	A|0.541;G|0.459	0	0	0	0	0
RFX2	5990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6047473	6047473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RFX2-156	NM_134433	exon2	c.C35T	p.A12V	ACGGACGCTGGCG	.	217	65	18	0	.	1	1	0	0	0
RPS28	6234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8386554	8386554	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RPS28-46	NM_001031	exon2	c.G54C	p.L18L	GGTCCTGGGCAGG	.	80	33	59	0	.	2034	1388	645	1	0
KANK3	256949	hgsc.bcm.edu	37	19	8399628	8399628	+	Silent	SNP	A	A	G	rs710949	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KANK3-90	NM_198471	exon3	c.T1083C	p.S361S	CTCCAGACTGGCG	.	4	4	0	0	A|0.411;G|0.589	0	0	0	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399635	8399635	+	Missense_Mutation	SNP	C	C	T	rs890853	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KANK3-90	NM_198471	exon3	c.G1076A	p.R359H	CTGGCGCGCAGCA	.	4	4	0	0	C|0.769;T|0.231	0	0	0	0	0
ZNF846	162993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9869036	9869036	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZNF846-23	NM_001077624	exon6	c.A717G	p.S239S	AAGGTGTGAGGAA	.	90	28	72	0	.	0	0	0	0	0
ZNF653	115950	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	11594864	11594864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZNF653-90	NM_138783	exon8	c.C1663T	p.P555S	GCAGGGGGGTCTC	.	269	115	45	0	.	0	0	0	0	0
CCDC105	126402	hgsc.bcm.edu	37	19	15133926	15133926	+	Missense_Mutation	SNP	C	C	A	rs8112667	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CCDC105-91	NM_173482	exon7	c.C1495A	p.P499T	GCGGACCCCTAGT	.	15	9	0	0	C|0.671;A|0.329	0	0	0	0	0
AKAP8L	26993	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	15508345	15508345	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	AKAP8L-1	NM_014371	exon11	c.A1391C	p.Q464P	AGATCCTGGTCTC	.	580	45	133	0	.	4	3	1	0	0
OR10H5	284433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15905273	15905273	+	Missense_Mutation	SNP	C	C	T	rs145808850	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	OR10H5-69	NM_001004466	exon1	c.C415T	p.R139W	AGCCTGCGGGGCT	.	1865	215	342	0	A|0.001;C|0.999;T|0.000	0	0	0	0	0
CHERP	10523	broad.mit.edu	37	19	16640581	16640583	+	In_Frame_Del	DEL	TGC	TGC	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CHERP-92	NM_006387	exon8	c.1005_1007del	p.335_336del	TGCTGTTGCTGCT	.	380	8	87	0	.	0	0	0	0	0
UPF1	5976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	18943028	18943028	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	UPF1-91	NM_002911	exon1	c.G10C	p.E4Q	AGCGTGGAGGCGT	.	181	113	69	0	.	3	1	2	0	0
YJEFN3	374887	broad.mit.edu	37	19	19648155	19648155	+	Missense_Mutation	SNP	C	C	T	rs200289592		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	YJEFN3-90	NM_198537	exon7	c.C722T	p.S241L	GCGATTCGGAGGA	.	84	46	17	1	.	4	2	2	0	0
RGS9BP	388531	hgsc.bcm.edu	37	19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	rs259290	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RGS9BP-90	NM_207391	exon1	c.G286T	p.A96S	CGACGCGCGCTGG	.	7	5	0	0	G|0.540;T|0.460	0	0	0	0	0
ZNF607	84775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38189550	38189550	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZNF607-90	NM_032689	exon5	c.A1482G	p.I494M	GCGATGTATAGTG	.	133	35	95	0	.	0	0	0	0	0
CAPN12	147968	hgsc.bcm.edu	37	19	39226927	39226927	+	Missense_Mutation	SNP	T	T	C	rs62120074		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CAPN12-91	NM_144691	exon12	c.A1406G	p.H469R	AGCGCATGGCTGC	.	8	4	0	0	T|0.939;C|0.061	1	0	1	0	0
APOE	348	hgsc.bcm.edu	37	19	45412079	45412079	+	Missense_Mutation	SNP	C	C	T	rs7412	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	APOE-90	NM_000041	exon4	c.C526T	p.R176C	CAGAAGCGCCTGG	.	12	8	2	0	C|0.933;T|0.067	3294	798	2494	1	1
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	18	18	0	0	C|0.804;T|0.196	24	0	24	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	17	6	1	0	C|0.254;G|0.746	0	0	0	0	0
SAE1	10055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47673134	47673134	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SAE1-227	NM_001145714	exon6	c.A687G	p.A229A	GAAAGCAAAGGCT	.	164	37	106	0	.	153	107	46	0	0
SLC8A2	6543	hgsc.bcm.edu	37	19	47951116	47951116	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SLC8A2-94	NM_015063	exon4	c.G1713A	p.V571V	GTAGTGCACGCCG	.	44	18	2	0	.	0	0	0	0	0
LRRC4B	94030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51022585	51022585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	LRRC4B-205	NM_001080457	exon3	c.G385A	p.A129T	TGAAGGCGCCCAC	.	224	58	84	0	.	0	0	0	0	0
TMEM86B	255043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55739581	55739581	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TMEM86B-90	NM_173804	exon2	c.C276G	p.I92M	CGGCCAGATGAGG	.	196	49	101	0	.	16	13	3	0	0
ZNF628	89887	hgsc.bcm.edu	37	19	55993260	55993260	+	Missense_Mutation	SNP	A	A	G	rs34864744		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZNF628-22	NM_033113	exon3	c.A700G	p.T234A	CCGGGTACCGCCT	.	4	4	0	0	A|0.270;G|0.730	0	0	0	0	0
ZFP28	140612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57065768	57065768	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZFP28-91	NM_020828	exon8	c.T1614C	p.C538C	TGTATGTCACAAA	.	56	8	61	0	.	8	8	0	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	9	9	0	0	G|0.301;C|0.699	0	0	0	0	0
MYT1L	23040	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	1946895	1946895	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MYT1L-95	NM_015025	exon9	c.G364A	p.E122K	CCTCCTCGTCCTC	.	270	168	135	2	.	0	0	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	6	6	0	0	A|0.003;G|0.997	1	0	1	0	0
RRM2	6241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	10263878	10263878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RRM2-227	NM_001165931	exon4	c.G514A	p.D172N	TCCAAGGACATTC	.	77	28	77	0	.	101	67	34	0	0
ASXL2	55252	broad.mit.edu	37	2	25965360	25965360	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ASXL2-23	NM_018263	exon12	c.C3846G	p.I1282M	GCTACGGATTGCC	.	35	3	47	0	.	1	1	0	0	0
TMEM247	388946	bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_001145051	exon2	c.C382G	p.Q128E	CAGCGGCAGCGGC	.	596	41	217	4	G|1.000;|0.000	0	0	0	0	0
USP39	10713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85872161	85872161	+	Silent	SNP	C	C	T	rs145807458		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	USP39-658	NM_001256725	exon11	c.C1518T	p.D506D	GCATGACGGCAAG	.	318	88	198	0	C|1.000;T|0.000	75	54	21	0	0
CD8B	926	hgsc.bcm.edu	37	2	87088964	87088964	+	Silent	SNP	A	A	G	rs62146888	byfrequency;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CD8B-92	NM_004931	exon1	c.T25C	p.L9L	CGGCCAAGAGGAG	.	8	8	0	0	A|0.476;G|0.524	0	0	0	0	0
RANBP2	5903	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	109380404	109380404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RANBP2-675	NM_006267	exon20	c.C3409T	p.P1137S	CATGGTCCAGGGA	.	219	64	195	1	.	5	3	2	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_023016	exon1	c.A126G	p.L42L	CGCCCTAGGCGGC	.	13	13	0	0	A|0.029;G|0.971	1	0	1	0	0
SMPD4	55627	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	130911319	130911319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SMPD4-90	NM_017951	exon17	c.G1966A	p.E656K	GGTATTCATCTGT	.	478	104	424	1	.	57	42	15	0	0
MZT2A	653784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	132241688	132241688	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MZT2A-68	NM_001085365	exon3	c.C423T	p.T141T	CAGCCTGGTAGCG	.	333	25	161	0	.	668	653	14	0	1
NR4A2	4929	ucsc.edu;bcgsc.ca	37	2	157182673	157182673	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NR4A2-189	NM_006186	exon7	c.C1529G	p.A510G	ACCATAGCCAGGG	.	205	121	135	2	.	0	0	0	0	0
SPC25	57405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169745769	169745769	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SPC25-226	NM_020675	exon3	c.C166A	p.R56R	CCATTCGTTCTTC	.	44	14	49	0	.	18	13	5	0	0
DHRS9	10170	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169939955	169939955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DHRS9-90	NM_005771	exon6	c.G430A	p.V144M	ATCAGTGTGACAC	.	261	89	185	1	.	0	0	0	0	0
DNAH7	56171	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	196740469	196740469	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DNAH7-102	NM_018897	exon38	c.G6216C	p.W2072C	ATCATACCAGTTC	.	241	82	196	1	.	0	0	0	0	0
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	212589871	212589871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ERBB4-1461	NM_001042599	exon6	c.C671T	p.P224L	ACGTAAGGTCCGT	.	490	122	346	0	.	0	0	0	0	0
MRPL44	65080	bcgsc.ca	37	2	224831581	224831581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MRPL44-90	NM_022915	exon4	c.G829T	p.D277Y	TCTAGTGATAAAA	.	82	5	84	0	.	0	0	0	0	0
ITCH	83737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33080396	33080396	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ITCH-659	NM_001257137	exon24	c.C2533G	p.L845V	GCTGATCTCATGG	.	100	34	82	0	.	0	0	0	0	0
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40713387	40713387	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PTPRT-664	NM_133170	exon30	c.C4128T	p.V1376V	TCGTCGGACCACT	.	348	95	219	0	.	0	0	0	0	0
DNTTIP1	116092	hgsc.bcm.edu	37	20	44420682	44420682	+	Silent	SNP	T	T	C	rs2664591	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DNTTIP1-91	NM_052951	exon1	c.T39C	p.P13P	GGGACCTAGCGGG	.	6	6	0	0	T|0.311;C|0.689	8	0	8	0	0
KRTAP11-1	337880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	32253737	32253737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KRTAP11-1-91	NM_175858	exon1	c.G107T	p.C36F	CCCAGGCAGTCAG	.	353	82	185	0	.	0	0	0	0	0
HUNK	30811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33371313	33371313	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	HUNK-334	NM_014586	exon11	c.C1961G	p.P654R	GGAGCCCCAATTG	.	39	11	43	0	.	0	0	0	0	0
KCNJ6	3763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	38997475	38997475	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KCNJ6-91	NM_002240	exon4	c.G1258T	p.E420X	TGGATTCATTCTC	.	70	5	58	0	.	0	0	0	0	0
KRTAP10-9	386676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46047395	46047395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_198690	exon1	c.G307A	p.V103I	GTGCCCGTCTGCT	.	509	133	113	0	.	0	0	0	0	0
KRTAP10-10	353333	ucsc.edu	37	21	46057634	46057634	+	Silent	SNP	T	T	C	rs61029972	bycluster;byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KRTAP10-10-90	NM_181688	exon1	c.T300C	p.C100C	CTGCTGTGTGCCC	.	346	113	137	1	T|0.860;C|0.140	0	0	0	0	0
KRTAP10-10	353333	ucsc.edu	37	21	46057640	46057640	+	Silent	SNP	C	C	T	rs78817801	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KRTAP10-10-90	NM_181688	exon1	c.C306T	p.P102P	TGTGCCCGTCTGC	.	365	71	145	0	C|0.983;T|0.017	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SCARF2-341	NM_153334	exon11	c.G2187C	p.P729P	CAGCCCCGGGGGG	.	9	9	0	0	C|0.138;G|0.862	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SCARF2-341	NM_153334	exon11	c.C2181G	p.R727R	CGGGGGGCGCGGC	.	10	10	0	0	G|0.826;C|0.174	0	0	0	0	0
LZTR1	8216	broad.mit.edu	37	22	21343966	21344002	+	In_Frame_Del	DEL	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	LZTR1-280	NM_006767	exon7	c.646_651del	p.216_217del	TGCTGGGAGGAGG	.	55	7	41	0	.	0	0	0	0	0
BCR	613	hgsc.bcm.edu	37	22	23655084	23655084	+	Silent	SNP	C	C	T	rs75389254		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	BCR-1349	NM_004327	exon20	c.C3333T	p.D1111D	CAAGGACGTGTCG	.	6	6	2	0	.	0	0	0	0	0
MN1	4330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	28192787	28192787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MN1-993	NM_002430	exon1	c.G3745A	p.E1249K	CCTTCTCCCAGGG	.	176	71	85	0	.	2	2	0	0	0
OSBP2	23762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31137254	31137254	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	OSBP2-114	NM_030758	exon2	c.A751T	p.S251C	GCCAGGAGCTACC	.	116	53	89	0	.	6	5	1	0	0
UPK3A	7380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45681905	45681905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	UPK3A-90	NM_006953	exon2	c.C136A	p.L46I	AAGCCTCTCTGCA	.	208	103	188	0	.	0	0	0	0	0
NGLY1	55768	bcgsc.ca	37	3	25777593	25777593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NGLY1-135	NM_018297	exon7	c.C1051A	p.H351N	CACAGTGCAGCCA	.	128	5	152	0	.	19	19	0	0	0
VILL	50853	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38043315	38043315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	VILL-90	NM_015873	exon12	c.C1443A	p.F481L	CCACTTCCTCGCC	.	286	112	232	1	.	0	0	0	0	0
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	41266132	41266155	+	In_Frame_Del	DEL	TCCTTCTCTGAGTGGTAAAGGCAA	TCCTTCTCTGAGTGGTAAAGGCAA	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	TCCTTCTCTGAGTGGTAAAGGCAA	TCCTTCTCTGAGTGGTAAAGGCAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CTNNB1-24361	NM_001098209	exon3	c.129_152del	p.43_51del	CACAGCTCCTTCT	.	113	15	173	0	.	0	0	0	0	0
FYCO1	79443	bcgsc.ca	37	3	46007825	46007825	+	Missense_Mutation	SNP	T	T	C	rs71622515	alternate_allele	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FYCO1-91	NM_024513	exon8	c.A3001G	p.N1001D	GGGTGTTGAGCTC	.	149	7	91	1	GTT|0.500;TTC|0.500	0	0	0	0	0
SETD2	29072	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	47139519	47139519	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SETD2-1273	NM_014159	exon9	c.G5068C	p.G1690R	CTCCTCCCAGGTA	.	36	4	54	0	.	11	10	1	0	0
PDZRN3	23024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	73437153	73437153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PDZRN3-232	NM_015009	exon8	c.A1484G	p.N495S	GAAAAGTTTTTAT	.	14	6	23	0	.	8	5	3	0	0
ZPLD1	131368	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	102171934	102171934	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZPLD1-72	NM_175056	exon3	c.T326C	p.I109T	TGGTCATTTTTAT	.	109	54	110	0	.	0	0	0	0	0
HEG1	57493	bcgsc.ca	37	3	124692689	124692689	+	Silent	SNP	C	C	T	rs2270778	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	HEG1-70	NM_020733	exon16	c.G3882A	p.P1294P	AGCATACGGGGAC	.	60	6	60	0	C|0.292;T|0.708	6	6	0	0	0
BCHE	590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	165548281	165548281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	BCHE-94	NM_000055	exon2	c.T541C	p.F181L	CTAAGAATCCTAG	.	65	36	84	0	.	16	16	0	0	0
ZNF639	51193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	179051848	179051848	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZNF639-90	NM_016331	exon7	c.A1096G	p.T366A	AAAATTACCTTTG	.	139	62	231	0	.	15	13	2	0	0
MAP3K13	9175	broad.mit.edu	37	3	185190907	185190907	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MAP3K13-548	NM_004721	exon11	c.A1788T	p.R596S	TAGCAGAGGCAGC	.	106	4	129	0	.	6	6	0	0	0
ATP13A4	84239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193174877	193174877	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ATP13A4-92	NM_032279	exon16	c.A1827G	p.T609T	AATGACTGTCATT	.	161	76	161	0	.	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195511379	195511379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MUC4-90	NM_018406	exon2	c.G7072A	p.A2358T	AGGAAGCGTCGGT	.	420	140	357	4	.	0	0	0	0	0
IDUA	3425	broad.mit.edu	37	4	996204	996204	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	IDUA-91	NM_000203	exon8	c.A1120C	p.T374P	AACAACACCCGCC	.	386	114	75	5	.	9	8	1	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388867	1388867	+	Missense_Mutation	SNP	A	A	C	rs76058011	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CRIPAK-90	NM_175918	exon1	c.A568C	p.I190L	CGCCTGATCACAC	.	383	28	44	0	A|0.994;C|0.006	76	6	70	0	0
MSX1	4487	hgsc.bcm.edu	37	4	4861745	4861745	+	Missense_Mutation	SNP	C	C	G	rs36059701		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MSX1-90	NM_002448	exon1	c.C119G	p.A40G	CCACGGCAGCCGC	.	12	4	0	0	C|0.867;G|0.133	1	0	1	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492769	48492769	+	Missense_Mutation	SNP	A	A	T	rs74929644		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZAR1-90	NM_175619	exon1	c.A461T	p.Q154L	CCCAGCAGCCATC	.	6	4	0	0	A|0.552;T|0.448	0	0	0	0	0
UGT2B28	54490	broad.mit.edu	37	4	70156400	70156400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	UGT2B28-91	NM_053039	exon5	c.C1181A	p.P394Q	GCATTCCATTGTT	.	816	18	625	1	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537171	88537171	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DSPP-90	NM_014208	exon5	c.C3357T	p.D1119D	CAGTGACAGCAGC	.	1051	32	641	7	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537186	88537186	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DSPP-90	NM_014208	exon5	c.T3372C	p.S1124S	TAGCAGTGACAGC	.	1046	78	647	16	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537195	88537195	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DSPP-90	NM_014208	exon5	c.T3381C	p.S1127S	CAGCAGTGACAGC	.	1014	68	636	18	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537222	88537222	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DSPP-90	NM_014208	exon5	c.T3408C	p.S1136S	TAGCAGTGACAGC	.	1121	36	730	5	.	0	0	0	0	0
C4orf32	132720	hgsc.bcm.edu	37	4	113066831	113066831	+	Missense_Mutation	SNP	G	G	A	rs10002700		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C4orf32-90	NM_152400	exon1	c.G95A	p.G32E	GGACCGGGTGGGA	.	4	4	0	0	G|0.022;A|0.978	6	0	6	0	0
FGF2	2247	hgsc.bcm.edu	37	4	123748086	123748086	+	Silent	SNP	C	C	T	rs1449683	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FGF2-659	NM_002006	exon1	c.C156T	p.S52S	CCCATCCGTGAAC	.	19	16	0	0	C|0.833;T|0.167	0	0	0	0	0
FAT4	79633	broad.mit.edu;bcgsc.ca	37	4	126240715	126240715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FAT4-108	NM_024582	exon1	c.G3149T	p.G1050V	CAGATGGTCAATT	.	206	8	236	0	.	0	0	0	0	0
FAT4	79633	broad.mit.edu	37	4	126241103	126241103	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FAT4-108	NM_024582	exon1	c.C3537T	p.V1179V	TACAGTCATAGCA	.	21	5	32	0	.	0	0	0	0	0
LRBA	987	bcgsc.ca	37	4	151793903	151793903	+	Missense_Mutation	SNP	T	T	C	rs72719663	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	LRBA-157	NM_006726	exon18	c.A2170G	p.I724V	TGTAGATAACACT	.	94	5	88	0	T|0.983;C|0.017	0	0	0	0	0
LRRC14B	389257	hgsc.bcm.edu	37	5	191992	191992	+	Silent	SNP	G	G	A	rs34710524	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	LRRC14B-69	NM_001080478	exon1	c.G339A	p.T113T	CCTCACGGGCATC	.	21	20	0	0	G|0.975;A|0.025	0	0	0	0	0
ZDHHC11	79844	bcgsc.ca	37	5	801252	801252	+	Missense_Mutation	SNP	C	C	T	rs142091140	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZDHHC11-92	NM_024786	exon12	c.G1209A	p.M403I	AGTTTTCATGGGC	.	237	18	83	1	C|0.999;T|0.001	3	3	0	0	0
ADAMTS16	170690	hgsc.bcm.edu	37	5	5140632	5140632	+	Silent	SNP	T	T	C	rs270208	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ADAMTS16-275	NM_139056	exon1	c.T52C	p.L18L	ATGCTGTTGGCGC	.	5	5	1	0	T|0.352;C|0.648	0	0	0	0	0
TRIO	7204	bcgsc.ca	37	5	14420027	14420027	+	Silent	SNP	A	A	C	rs30612	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TRIO-562	NM_007118	exon34	c.A5100C	p.T1700T	GCGGACAACTGAC	.	326	8	303	2	A|0.129;C|0.871	3	3	0	0	0
C7	730	broad.mit.edu;ucsc.edu	37	5	40959605	40959605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C7-22	NM_000587	exon12	c.G1544A	p.G515E	TCCAAGGGAAGAA	.	190	32	111	2	.	238	160	78	0	0
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89986640	89986640	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	GPR98-103	NM_032119	exon31	c.G6733T	p.E2245X	ATTGTAGAGGAAC	.	126	41	98	0	.	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_175873	exon1	c.G371C	p.R124P	TGGTCCGGGTGCC	.	8	8	0	0	G|0.980;C|0.020	0	0	0	0	0
SLC23A1	9963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	138714364	138714364	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SLC23A1-90	NM_152685	exon10	c.C1095T	p.F365F	TTCGGTGAAGATG	.	239	24	157	0	.	0	0	0	0	0
NRG2	9542	hgsc.bcm.edu	37	5	139422602	139422602	+	Missense_Mutation	SNP	C	C	T	rs188534354		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NRG2-526	NM_013982	exon1	c.G53A	p.R18Q	CTGCACCGACCCT	.	22	14	1	0	C|0.993;T|0.007	8	2	6	0	0
PCDHGA4	56111	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	140737208	140737208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_032053	exon1	c.G2441A	p.R814K	ATAATAGATCATA	.	103	17	125	0	.	0	0	0	0	0
SLC26A2	1836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149360104	149360104	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SLC26A2-90	NM_000112	exon3	c.G948C	p.L316F	TCTTTTGCCAACC	.	108	48	83	0	.	15	8	7	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PPP1R3G-136	NM_001145115	exon1	c.A351G	p.A117A	GGACGCACAGCTC	.	17	17	0	0	A|0.006;G|0.994	26	0	26	0	0
LINC00518	221718	bcgsc.ca	37	6	10430171	10430171	+	RNA	SNP	T	T	C	rs303061	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	.	.	.	.	AGAAAGTACCAGA	.	136	6	115	0	T|0.756;C|0.244	0	0	0	0	0
HIST1H3H	8357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27777856	27777856	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	HIST1H3H-45	NM_003536	exon1	c.C5G	p.A2G	GCATGGCGCGTAC	.	240	52	80	0	.	3	3	0	0	0
ABCF1	23	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30557635	30557635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ABCF1-92	NM_001025091	exon22	c.C2117T	p.T706M	AGGAGACGCCCAC	.	154	47	118	1	.	61	30	31	0	0
PPP1R18	170954	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30652252	30652252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_001134870	exon2	c.T1544C	p.L515P	CCCCCCAGAACCA	.	135	9	91	0	.	42	39	2	1	0
TNXB	7148	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32023746	32023746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TNXB-90	NM_019105	exon24	c.G8349T	p.R2783S	CTCGCCCCTGACA	.	384	116	104	2	.	0	0	0	0	0
NOTCH4	4855	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32166298	32166298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NOTCH4-1321	NM_004557	exon26	c.G4656T	p.W1552C	CAGAGACCAGAGC	.	132	31	93	2	.	5	5	0	0	0
CUTA	51596	broad.mit.edu;bcgsc.ca	37	6	33385930	33385930	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CUTA-90	NM_001014433	exon1	c.C33T	p.G11G	ACCTGCGCCTCCA	.	227	19	137	2	.	12	9	0	1	2
CUTA	51596	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	33385931	33385931	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CUTA-90	NM_001014433	exon1	c.G32C	p.G11A	CCTGCGCCTCCAG	.	225	18	138	0	.	7	7	0	0	0
PPARD	5467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35388052	35388052	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PPARD-187	NM_001171818	exon5	c.G279T	p.G93G	TGAGGGGTGCAAG	.	91	42	54	0	.	0	0	0	0	0
KCNK16	83795	bcgsc.ca	37	6	39282806	39282806	+	Missense_Mutation	SNP	G	G	T	rs11756091	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KCNK16-229	NM_032115	exon6	c.C902A	p.P301H	GATATGGGGAAGT	.	170	7	146	0	G|0.400;T|0.600	0	0	0	0	0
UNC5CL	222643	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41002645	41002645	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	UNC5CL-92	NM_173561	exon2	c.A169C	p.T57P	GGGGGGTAGGCTG	.	121	30	83	2	.	1	1	0	0	0
RCAN2	10231	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	46214635	46214635	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RCAN2-90	NM_001251973	exon4	c.G421T	p.G141X	TGTCTCCATCTGT	.	98	5	97	0	.	2	2	0	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51524734	51524734	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PKHD1-603	NM_138694	exon61	c.A10190T	p.Q3397L	AGAAATTGGTATG	.	79	30	93	0	.	0	0	0	0	0
KHDC1L	100129128	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	73935131	73935131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KHDC1L-1	NM_001126063	exon1	c.A1G	p.M1V	CGGCCATGCTGTG	.	103	27	89	1	.	0	0	0	0	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	22	6	0	0	T|0.089;G|0.911	0	0	0	0	0
REV3L	5980	hgsc.bcm.edu;bcgsc.ca	37	6	111693904	111693904	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	REV3L-294	NM_002912	exon13	c.5654delC	p.P1885fs	CTACTTGGGGGGG	.	127	56	110	0	.	0	0	0	0	0
MCM9	254394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	119252669	119252669	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MCM9-515	NM_017696	exon1	c.C220G	p.R74G	ACCTTCGCAGTGC	.	181	115	189	0	.	1	1	0	0	0
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138531144	138531144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KIAA1244-228	NM_020340	exon4	c.C317T	p.S106L	CGCCTTCGCTCAA	.	681	223	362	0	.	0	0	0	0	0
LRP11	84918	hgsc.bcm.edu	37	6	150184882	150184882	+	Missense_Mutation	SNP	G	G	C	rs9322225		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	LRP11-90	NM_032832	exon1	c.C275G	p.P92R	CTGCCCGGGCCCG	.	10	10	0	0	G|0.492;C|0.508	1	0	1	0	0
KIF25	3834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	168442715	168442715	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KIF25-92	NM_030615	exon7	c.G713A	p.R238H	GGAGCCGCAGAGC	.	399	128	215	0	.	0	0	0	0	0
ABCB5	340273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20782576	20782576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ABCB5-158	NM_001163941	exon25	c.G3101A	p.R1034H	TCCTCCGTGGCTT	.	252	98	172	0	.	0	0	0	0	0
NPVF	64111	ucsc.edu;bcgsc.ca	37	7	25267934	25267934	+	Missense_Mutation	SNP	T	T	C	rs877834	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NPVF-91	NM_022150	exon1	c.A125G	p.D42G	TATTTGTCATAAT	.	65	7	83	0	C|0.206;N|0.000	0	0	0	0	0
NPSR1	387129	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34698162	34698162	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NPSR1-94	NM_207172	exon1	c.C138G	p.Y46X	CTACTACTCCTTT	.	209	56	134	1	.	0	0	0	0	0
AEBP1	165	broad.mit.edu;bcgsc.ca	37	7	44150789	44150789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	AEBP1-90	NM_001129	exon14	c.C1667A	p.A556D	TGGTGGCCACCGA	.	327	20	179	1	.	6	6	0	0	0
RAMP3	10268	hgsc.bcm.edu	37	7	45197433	45197433	+	Silent	SNP	G	G	A	rs67477213		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RAMP3-90	NM_005856	exon1	c.G6A	p.E2E	CATGGAGACTGGA	.	26	18	0	0	G|0.760;A|0.240	1	1	0	0	0
ATP5J2-PTCD1	100526740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99032679	99032679	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_001198879	exon3	c.A334T	p.T112S	TGCCCGTGTTTTC	.	66	18	56	0	.	2	1	1	0	0
MBLAC1	255374	hgsc.bcm.edu	37	7	99725210	99725210	+	Silent	SNP	G	G	T	rs142426754		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MBLAC1-135	NM_203397	exon2	c.G192T	p.G64G	GCGCGGGAGTGGC	.	13	12	0	0	G|0.976;T|0.024	0	0	0	0	0
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103243773	103243773	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RELN-574	NM_173054	exon24	c.G3311C	p.G1104A	GATGATCCAGAAG	.	164	44	156	0	.	5	4	1	0	0
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	138601908	138601908	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KIAA1549-369	NM_020910	exon2	c.2464delG	p.V822fs	CAGACACGTGACC	.	142	29	96	0	.	0	0	0	0	0
SSPO	23145	bcgsc.ca	37	7	149486382	149486382	+	Missense_Mutation	SNP	C	C	G	rs2074704	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_198455	exon30	c.C4358G	p.P1453R	CGTGCCCCCAGGG	.	291	112	23	1	C|0.891;G|0.109	0	0	0	0	0
NOS3	4846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150698991	150698991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NOS3-1011	NM_001160111	exon12	c.G1585T	p.G529C	GAGACCGGCCGGG	.	263	52	191	0	.	1	1	0	0	0
SLC4A2	6522	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150771214	150771214	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SLC4A2-90	NM_003040	exon17	c.G2624C	p.R875T	GGGCAAGACCCAC	.	183	52	78	1	.	56	36	20	0	0
CSMD1	64478	bcgsc.ca	37	8	3072036	3072036	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CSMD1-86	NM_033225	exon30	c.T4850G	p.V1617G	GGCAGCACTTGGT	.	317	14	151	0	.	0	0	0	0	0
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	10465856	10465856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RP1L1-139	NM_178857	exon4	c.G5752A	p.E1918K	CTGTCTCTGGCTG	.	45	8	30	0	.	0	0	0	0	0
XPO7	23039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	21845361	21845361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	XPO7-273	NM_015024	exon15	c.G1780A	p.G594R	TTCATAGGAAAAA	.	257	54	173	0	.	0	0	0	0	0
ENTPD4	9583	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	23305367	23305367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ENTPD4-92	NM_004901	exon4	c.A238G	p.T80A	TGTCTGTAGCTTC	.	503	106	227	1	.	8	5	3	0	0
KIF13B	23303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	29035052	29035052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KIF13B-22	NM_015254	exon9	c.C764T	p.A255V	CTGCCAGCTAAAT	.	124	26	93	0	.	11	7	4	0	0
WRN	7486	bcgsc.ca	37	8	31024654	31024654	+	Missense_Mutation	SNP	T	T	C	rs1346044	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	WRN-1036	NM_000553	exon34	c.T4099C	p.C1367R	CCTTCATGTGATG	.	553	12	322	2	T|0.798;C|0.202	29	29	0	0	0
GPR124	25960	hgsc.bcm.edu	37	8	37699516	37699516	+	Silent	SNP	C	C	T	rs7010546	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	GPR124-157	NM_032777	exon19	c.C3660T	p.G1220G	GAGCGGCAGTCTG	.	15	13	0	0	C|0.479;G|0.000;T|0.520	0	0	0	0	0
KAT6A	7994	ucsc.edu;bcgsc.ca	37	8	41791017	41791017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_001099412	exon18	c.G4721A	p.G1574D	CTGCCGCCCATCG	.	338	263	175	3	.	9	3	6	0	0
RB1CC1	9821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	53569634	53569634	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RB1CC1-170	NM_001083617	exon15	c.G2755T	p.E919X	CTTTTTCATGTTT	.	37	6	33	0	.	20	20	0	0	0
C8orf46	254778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	67428183	67428183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C8orf46-92	NM_152765	exon6	c.G496A	p.E166K	GGAGCAGAAGCCT	.	47	7	45	0	.	0	0	0	0	0
RSPO2	340419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	108970363	108970363	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	RSPO2-231	NM_178565	exon5	c.T561C	p.C187C	GGTTGGACACAGT	.	298	61	146	0	.	0	0	0	0	0
AARD	441376	hgsc.bcm.edu	37	8	117950768	117950768	+	Missense_Mutation	SNP	G	G	C	rs16889283	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_001025357	exon1	c.G286C	p.G96R	TGGACGGGCGTTG	.	5	5	0	0	C|0.278;G|0.722	8	0	8	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	20	19	0	0	.	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	14	14	0	0	A|0.118;G|0.882	6	0	6	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	33	21	0	0	A|0.738;G|0.262	11	5	6	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	23	16	1	0	G|0.246;A|0.754	38	12	26	0	0
SCRT1	83482	hgsc.bcm.edu	37	8	145557497	145557497	+	Missense_Mutation	SNP	A	A	C	rs7013127		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	.	NM_031309	exon2	c.T397G	p.S133A	CGGCAGAGCCGGC	.	7	6	0	0	A|0.096;C|0.904	0	0	0	0	0
MFSD3	113655	broad.mit.edu;bcgsc.ca	37	8	145736053	145736053	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MFSD3-69	NM_138431	exon3	c.C903A	p.V301V	CTTGGTCTTCCAC	.	74	5	44	0	.	33	30	3	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	12	12	0	0	G|0.992;C|0.006	2	0	2	0	0
C9orf66	157983	hgsc.bcm.edu	37	9	214706	214706	+	Missense_Mutation	SNP	G	G	C	rs540473	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C9orf66-514	NM_152569	exon1	c.C691G	p.R231G	AGTATCGGGAGGC	.	7	7	0	0	G|0.516;C|0.484	0	0	0	0	0
TUSC1	286319	hgsc.bcm.edu	37	9	25678122	25678122	+	Silent	SNP	G	G	C	rs72631814	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TUSC1-90	NM_001004125	exon1	c.C198G	p.A66A	CAGGTCGGCAAAC	.	48	35	0	0	G|0.807;C|0.193	4	1	3	0	0
C9orf41	138199	broad.mit.edu	37	9	77642981	77642983	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C9orf41-92	NM_152420	exon1	c.175_177del	p.59_59del	AAGCCTCTCCTCC	.	316	8	67	0	.	0	0	0	0	0
TLE4	7091	broad.mit.edu	37	9	82267611	82267611	+	Missense_Mutation	SNP	G	G	C	rs41307447	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TLE4-524	NM_007005	exon7	c.G494C	p.S165T	TCGGTAGCAGTGC	.	108	5	80	1	G|0.997;C|0.003	22	22	0	0	0
C9orf170	401535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	89771511	89771511	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	C9orf170-90	NM_001001709	exon2	c.G192T	p.L64L	AACCCTGACTAAT	.	78	15	85	0	.	0	0	0	0	0
GALNT12	79695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101589096	101589096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	GALNT12-92	NM_024642	exon3	c.G604A	p.A202T	ATCCGCGCCAACA	.	119	34	39	0	.	3	2	1	0	0
GRIN3A	116443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	104449164	104449164	+	Missense_Mutation	SNP	C	C	T	rs145326290		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	GRIN3A-96	NM_133445	exon2	c.G1018A	p.E340K	TAATTTCGAAAAT	.	67	16	82	0	C|0.999;T|0.000	0	0	0	0	0
CRB2	286204	hgsc.bcm.edu	37	9	126135831	126135831	+	Silent	SNP	T	T	C	rs7848449	byfrequency	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	CRB2-91	NM_173689	exon10	c.T3021C	p.A1007A	GCTGGCTGAGAAC	.	16	6	0	0	T|0.886;C|0.114	0	0	0	0	0
TMEM8C	389827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136379902	136379902	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TMEM8C-68	NM_001080483	exon5	c.G522A	p.W174X	GTAGTCCCAGTCC	.	103	32	68	0	.	0	0	0	0	0
LRRC26	389816	hgsc.bcm.edu	37	9	140064315	140064315	+	Missense_Mutation	SNP	C	C	A	rs7019671		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	LRRC26-22	NM_001013653	exon1	c.G81T	p.Q27H	CGACACCTGGGCC	.	6	4	0	0	C|0.733;A|0.267	0	0	0	0	0
NLGN4X	57502	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	5821337	5821337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NLGN4X-195	NM_181332	exon5	c.C1382T	p.A461V	TACTGCGCGTGCA	.	197	99	170	0	.	0	0	0	0	0
HDHD1	8226	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	7023778	7023778	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	HDHD1-130	NM_001135565	exon3	c.T232G	p.L78V	CCTCTAATGCCTT	.	173	24	253	1	.	5	2	3	0	0
FAM9A	171482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	8763192	8763192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FAM9A-130	NM_174951	exon7	c.G758T	p.G253V	CCTCCTCCTCCTT	.	58	35	57	0	.	0	0	0	0	0
FRMPD4	9758	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12734821	12734821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FRMPD4-263	NM_014728	exon15	c.C2243T	p.A748V	ATGACGCGGAGGA	.	178	92	108	1	.	0	0	0	0	0
DMD	1756	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	31196848	31196848	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	DMD-265	NM_004006	exon70	c.G10161A	p.A3387A	ATGCTTCGCAAAA	.	139	62	260	2	.	10	0	10	0	0
WDR45	11152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48935337	48935337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	WDR45-131	NM_007075	exon5	c.G200A	p.G67D	CCACCGCCCACCA	.	111	59	129	0	.	30	0	30	0	0
MAGIX	79917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49021301	49021301	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MAGIX-108	NM_024859	exon4	c.A380T	p.E127V	CTGTGGAGCTGGT	.	95	39	101	0	.	0	0	0	0	0
KIAA2022	340533	broad.mit.edu	37	X	73961529	73961529	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	KIAA2022-183	NM_001008537	exon3	c.G2863C	p.D955H	GGGTATCTTGCAT	.	172	5	214	0	.	0	0	0	0	0
ARL13A	392509	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	100229150	100229150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ARL13A-131	NM_001162490	exon3	c.T94C	p.S32P	AACAACTCTGGCA	.	83	7	112	0	.	0	0	0	0	0
ZMAT1	84460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	101139313	101139313	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	ZMAT1-131	NM_001011657	exon7	c.G1086A	p.Q362Q	GTAGGTCTGGGAA	.	133	19	149	0	.	1	1	0	0	0
MORF4L2	9643	ucsc.edu	37	X	102931750	102931750	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MORF4L2-130	NM_001142422	exon5	c.C206A	p.S69X	GATCCTGAAGGGG	.	37	4	24	0	.	278	278	0	0	0
PAK3	5063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	110439738	110439738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	PAK3-1043	NM_001128168	exon14	c.C1385T	p.P462L	GAACCCCATATTG	.	152	60	137	0	.	0	0	0	0	0
WDR44	54521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117532433	117532433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	WDR44-133	NM_001184965	exon8	c.C1274A	p.T425K	AGAAAACGTGAGT	.	383	147	540	0	.	0	0	0	0	0
F9	2158	bcgsc.ca	37	X	138633280	138633280	+	Missense_Mutation	SNP	A	A	G	rs6048	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	F9-227	NM_000133	exon6	c.A580G	p.T194A	GCTGAGACTGTTT	.	114	5	132	0	A|0.797;0|0.004	0	0	0	0	0
LDOC1	23641	broad.mit.edu	37	X	140271095	140271095	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	LDOC1-130	NM_012317	exon1	c.G112T	p.A38S	GGCTGGCCCTCTC	.	187	17	41	1	.	0	0	0	0	0
TAZ	6901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153647890	153647890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	TAZ-130	NM_181312	exon6	c.G469A	p.V157I	GATGGCGTCTACC	.	267	109	253	0	.	2	2	0	0	0
FAM163A	148753	broad.mit.edu	37	1	179783093	179783094	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FAM163A-91	NM_173509	exon5	c.273_274insG	p.A91fs	GGTGGCCGCGAGC	.	279	12	48	0	.	0	0	0	0	0
NCOR2	9612	broad.mit.edu	37	12	124824721	124824722	+	In_Frame_Ins	INS	-	-	GCCGCTGCT	rs143952466	bycluster;by1000genomes	TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	NCOR2-229	NM_006312	exon39	c.5518_5519insAGCAGCGGC	p.G1840delinsSSGG	CACCCCCGCCGCT	.	33	8	7	0	.	0	0	0	0	0
SCAPER	49855	broad.mit.edu	37	15	76998254	76998255	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SCAPER-137	NM_020843	exon17	c.2237_2238insA	p.I746fs	AGCTGAATTTTTT	.	6	2	13	0	.	0	0	0	0	0
FARSB	10056	hgsc.bcm.edu	37	2	223505606	223505607	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	FARSB-91	NM_005687	exon4	c.314_315insAA	p.I105fs	TTCTGGATTTTTC	.	26	14	48	2	.	0	0	0	0	0
MCC	4163	broad.mit.edu	37	5	112824048	112824049	+	In_Frame_Ins	INS	-	-	GCC	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	MCC-69	NM_001085377	exon1	c.64_65insGGC	p.S22delinsGS	TGCCGCTGCCGCC	.	42	8	7	0	.	0	0	0	0	0
GNB1	2782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1720546	1720547	+	Missense_Mutation	DNP	CA	CA	AC	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	GNB1-227	NM_002074	exon10	c.T861G	p.G288W	GTACCCAGCAAGG	.	196	0	197	0	A|0.999;G|0.001	0	0	0	0	0
SOAT2	8435	hgsc.bcm.edu	37	12	53509339	53509340	+	Silent	DNP	GC	GC	TT	rs34924760		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	SOAT2-91	NM_003578	exon6	c.C610T	p.A202A	GCGCTGCTAGCCG	.	14	7	0	0	C|0.787;T|0.213	0	0	0	0	0
UGT2A3	79799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	69817434	69817435	+	Missense_Mutation	DNP	GA	GA	CT	novel		TCGA-OR-A5K9-01A-11D-A29I-10	TCGA-OR-A5K9-11A-11D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	feb3eb04-dedc-49eb-aed6-89df22b5eaff	e8c64ccb-c7ba-449f-aafa-7fcf256ce2e5	.	UGT2A3-92	NM_024743	exon1	c.T44A	p.L15Q	CAGAAGAGCTGCA	.	91	0	59	0	.	0	0	0	0	0