Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 SLC2A5 6518 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 9118302 9118302 + Missense_Mutation SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . SLC2A5-517 NM_003039 exon2 c.C41T p.T14M ACAAGCGTCAGCC . 242 92 321 1 . 0 0 0 0 0 PTCHD2 57540 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 11574461 11574461 + Missense_Mutation SNP T T C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PTCHD2-209 NM_020780 exon4 c.T1331C p.L444P AGGTTCTCTATGG . 50 21 90 1 . 0 0 0 0 0 FAM131C 348487 ucsc.edu 37 1 16385007 16385007 + Silent SNP C C T rs28667975 TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . FAM131C-514 NM_182623 exon7 c.G768A p.G256G GTGGGTCCCACCC . 31 9 11 0 C|1.000;|0.000 35 35 0 0 0 UBR4 23352 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 19455563 19455563 + Missense_Mutation SNP T T A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . UBR4-612 NM_020765 exon61 c.A8912T p.H2971L ACCATGTGCAGCC . 88 30 131 0 . 0 0 0 0 0 RNF19B 127544 bcgsc.ca 37 1 33407925 33407925 + Missense_Mutation SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . RNF19B-68 NM_153341 exon7 c.C1541T p.A514V AAGCTGGCCGTTT . 111 6 157 0 . 3 3 0 0 0 PRDX1 5052 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 45980288 45980290 + In_Frame_Del DEL ATC ATC - novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 ATC ATC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PRDX1-514 NM_181696 exon5 c.403_405del p.135_135del ACCCTTATCATCA . 107 35 169 0 . 0 0 0 0 0 PDE4B 5142 ucsc.edu;bcgsc.ca 37 1 66384376 66384376 + Missense_Mutation SNP T T A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PDE4B-92 NM_002600 exon3 c.T139A p.S47T TGTTGCTCAGGAA . 225 99 269 3 . 0 0 0 0 0 IFI44L 10964 ucsc.edu 37 1 79095482 79095482 + Nonsense_Mutation SNP T T A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . IFI44L-90 NM_006820 exon4 c.T605A p.L202X TTCTTTTGGTGGG . 42 4 65 0 . 0 0 0 0 0 GBP4 115361 ucsc.edu 37 1 89658754 89658754 + Missense_Mutation SNP C C A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . GBP4-90 NM_052941 exon5 c.G503T p.R168M TTTGCCCTGATTA . 42 4 85 0 . 0 0 0 0 0 NTNG1 22854 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 107691233 107691233 + Missense_Mutation SNP C C A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . NTNG1-140 NM_001113228 exon2 c.C18A p.F6L AAGATTCCTGTCG . 119 55 145 0 . 0 0 0 0 0 ADAMTSL4 54507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 150532560 150532560 + Missense_Mutation SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ADAMTSL4-92 NM_019032 exon19 c.C3113T p.P1038L GCTCTCCACATTG . 262 47 137 0 . 2 2 0 0 0 SPTA1 6708 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 158632609 158632609 + Missense_Mutation SNP C C G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . SPTA1-142 NM_003126 exon17 c.G2347C p.A783P GGGTGGCCAGTGG . 209 44 150 0 . 0 0 0 0 0 DUSP12 11266 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 161722196 161722196 + Missense_Mutation SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . DUSP12-226 NM_007240 exon4 c.C616T p.P206S GTTGACCCAACTA . 319 135 261 2 . 20 13 7 0 0 PTPN7 5778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 202122941 202122941 + Missense_Mutation SNP G G T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PTPN7-227 NM_002832 exon7 c.C944A p.T315K TCTTCTGTGGGCC . 144 22 100 0 . 0 0 0 0 0 KCNH1 3756 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 210857405 210857405 + Missense_Mutation SNP T T G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . KCNH1-94 NM_172362 exon11 c.A2188C p.I730L GCAAGATCAGGGG . 45 10 22 0 . 0 0 0 0 0 USH2A 7399 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 215821063 215821063 + Silent SNP G G T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . USH2A-115 NM_206933 exon67 c.C14592A p.L4864L GAATTGGAGTTCA . 50 10 29 0 . 0 0 0 0 0 TRIM11 81559 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 228582932 228582932 + Missense_Mutation SNP T T C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . TRIM11-658 NM_145214 exon6 c.A881G p.D294G GCGGTGTCCGGGT . 43 9 25 0 . 30 20 10 0 0 CCDC3 83643 bcgsc.ca 37 10 12940564 12940564 + Missense_Mutation SNP T T A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . CCDC3-91 NM_031455 exon3 c.A665T p.K222M ACCTTCTTCACTC . 137 6 133 0 . 0 0 0 0 0 HSPA14 51182 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 14909858 14909859 + Frame_Shift_Del DEL TA TA - novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 TA TA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . HSPA14-291 NM_016299 exon12 c.1330_1331del p.444_444del GAACTCTATGAGT . 158 60 120 0 . 0 0 0 0 0 OLAH 55301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 15103749 15103749 + Missense_Mutation SNP G G C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . OLAH-68 NM_018324 exon5 c.G349C p.E117Q GGAAGAGAAAGCA . 150 35 144 0 . 0 0 0 0 0 FRMPD2 143162 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 49440201 49440201 + Silent SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . FRMPD2-153 NM_001018071 exon10 c.C1125T p.A375A GAGGTTGGCAAAG . 138 47 124 0 . 0 0 0 0 0 ANK3 288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 61835910 61835910 + Missense_Mutation SNP T T A rs201650334 alternate_allele TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ANK3-107 NM_020987 exon37 c.A4729T p.M1577L AAGACATTGTCCG . 340 72 255 0 . 0 0 0 0 0 CYP26C1 340665 broad.mit.edu 37 10 94828150 94828150 + Missense_Mutation SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . CYP26C1-90 NM_183374 exon6 c.G1265A p.R422H TGTACCGCAGCCC . 85 4 73 0 . 0 0 0 0 0 C11orf35 256329 hgsc.bcm.edu 37 11 560710 560710 + Missense_Mutation SNP A A G rs200922487 TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . C11orf35-69 NM_173573 exon1 c.T7C p.W3R GCAGCCACCGCAT . 12 8 3 0 . 0 0 0 0 0 DCDC1 341019 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 31349747 31349747 + Silent SNP T T C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . DCDC1-91 NM_181807 exon3 c.A81G p.V27V CTGTAATACTTCC . 50 6 59 0 . 0 0 0 0 0 WT1-AS 51352 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 32461206 32461206 + RNA SNP C C A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . WT1-AS-68 . . . . TCTCCCCCAGTTC . 82 32 99 0 . 0 0 0 0 0 OR4C11 219429 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 55371204 55371204 + Missense_Mutation SNP A A G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . OR4C11-69 NM_001004700 exon1 c.T646C p.Y216H CAATATATGAAAT . 95 35 96 0 . 0 0 0 0 0 CD248 57124 broad.mit.edu;bcgsc.ca 37 11 66084195 66084195 + Missense_Mutation SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . CD248-154 NM_020404 exon1 c.G304A p.G102S TGAAGCCGCGCAG . 49 8 21 0 . 1 1 0 0 0 RAB6A 5870 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 73441848 73441848 + Missense_Mutation SNP T T C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . RAB6A-227 NM_002869 exon2 c.A91G p.T31A ATCTGGTGATCAA . 227 60 226 0 . 9 4 5 0 0 TAF1D 79101 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 93471576 93471576 + Missense_Mutation SNP A A C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . TAF1D-90 NM_024116 exon3 c.T158G p.V53G GTACGAACAAATT . 79 42 69 1 . 45 23 22 0 0 MRE11A 4361 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 94201026 94201026 + Missense_Mutation SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . MRE11A-722 NM_005591 exon10 c.C1051T p.R351C CCAGACGTTCCCG . 139 28 169 1 . 11 10 1 0 0 VWF 7450 broad.mit.edu;bcgsc.ca 37 12 6128740 6128740 + Missense_Mutation SNP G G C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . VWF-163 NM_000552 exon28 c.C3844G p.L1282V CATCCAGCAGGAA . 221 9 241 0 . 8 8 0 0 0 C12orf57 113246 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 7053766 7053766 + Missense_Mutation SNP G G T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . C12orf57-90 NM_138425 exon2 c.G180T p.Q60H CACGCAGATCCAG . 358 93 248 0 . 193 171 22 0 0 PIK3C2G 5288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 18491453 18491453 + Silent SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PIK3C2G-1312 NM_004570 exon9 c.C1366T p.L456L AATGAACTAAGTC . 139 29 192 0 . 0 0 0 0 0 SLCO1C1 53919 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 20864373 20864373 + Missense_Mutation SNP C C T rs181627657 TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . SLCO1C1-97 NM_017435 exon5 c.C458T p.P153L TCTCTCCGTGTCT . 109 36 120 1 C|0.999;T|0.000 0 0 0 0 0 TUBA1C 84790 ucsc.edu 37 12 49666152 49666152 + Silent SNP G G A rs199599214 byfrequency TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . TUBA1C-90 NM_032704 exon4 c.G492A p.K164K CAAGAAGTCCAAG . 430 18 220 8 G|0.998;A|0.002 749 505 244 0 0 ATF1 466 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 51207830 51207830 + Silent SNP T T C rs186674535 alternate_allele TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ATF1-685 NM_005171 exon5 c.T366C p.S122S GGCAAGTCCAGGC . 302 75 189 0 T|0.999;G|0.000 32 25 7 0 0 OR6C2 341416 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 55846356 55846356 + Missense_Mutation SNP G G A rs187562104 TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . OR6C2-70 NM_054105 exon1 c.G359A p.R120H ATGACCGCTATGT . 103 19 85 0 G|0.999;A|0.001 0 0 0 0 0 NABP2 79035 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 56622965 56622965 + Missense_Mutation SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . . NM_024068 exon7 c.G604A p.G202S AGTAACGGCAAAG . 155 20 102 0 . 38 29 9 0 0 AVPR1A 552 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 63544072 63544072 + Missense_Mutation SNP C C A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . AVPR1A-946 NM_000706 exon1 c.G545T p.S182I GGCGTGCTCAGCA . 282 59 161 0 . 0 0 0 0 0 LLPH 84298 broad.mit.edu 37 12 66517671 66517671 + Silent SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . LLPH-514 NM_032338 exon3 c.G339A p.K113K TTTCCCCTTTCTT . 135 5 69 0 . 273 258 15 0 0 HCFC2 29915 hgsc.bcm.edu;bcgsc.ca 37 12 104459979 104459990 + In_Frame_Del DEL AGATATCCCTCC AGATATCCCTCC - novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 AGATATCCCTCC AGATATCCCTCC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . HCFC2-92 NM_013320 exon2 c.198_209del p.66_70del TAGAGGAGATATC . 134 5 98 0 . 0 0 0 0 0 FAM222A 84915 hgsc.bcm.edu 37 12 110206245 110206245 + Missense_Mutation SNP G G A rs201640109 TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . . NM_032829 exon3 c.G511A p.G171S CCACCCGGCCTGC . 30 18 0 0 . 16 8 8 0 0 GAS6 2621 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 114529971 114529971 + Missense_Mutation SNP T T C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . GAS6-650 NM_000820 exon12 c.A1475G p.Y492C TTACTGTAGTCCA . 125 53 149 0 . 0 0 0 0 0 EFS 10278 bcgsc.ca 37 14 23834217 23834217 + Silent SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . EFS-153 NM_032459 exon1 c.G18A p.S6S ACTCACCGACGTG . 186 70 198 4 . 0 0 0 0 0 PCK2 5106 ucsc.edu 37 14 24568382 24568382 + Silent SNP C C T rs200826292 TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PCK2-227 NM_004563 exon5 c.C789T p.C263C GAAGTGCTTTGCC . 45 4 48 0 C|0.999;T|0.001 24 24 0 0 0 NPAS3 64067 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 33684463 33684463 + Silent SNP T T C rs138614075 TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . NPAS3-93 NM_001164749 exon3 c.T216C p.Y72Y GTTCTATGAATTG . 97 30 141 1 T|1.000;C|0.000 0 0 0 0 0 ARID4A 5926 broad.mit.edu 37 14 58831394 58831394 + Missense_Mutation SNP T T A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ARID4A-231 NM_002892 exon20 c.T2587A p.S863T GGACAATCATCGC . 104 3 109 0 . 3 3 0 0 0 PAPLN 89932 broad.mit.edu 37 14 73712814 73712814 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PAPLN-70 NM_173462 exon5 c.G265T p.E89X CGGGCCGAGCAGT . 105 6 49 0 . 0 0 0 0 0 ABCD4 5826 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 74763089 74763089 + Missense_Mutation SNP C C A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ABCD4-292 NM_005050 exon5 c.G489T p.K163N GATGAGCTTGCTG . 78 23 77 0 . 4 3 1 0 0 TMEM63C 57156 broad.mit.edu 37 14 77685876 77685876 + Silent SNP T T A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . . NM_020431 exon4 c.T186A p.A62A GAAAGCTGCGTGG . 115 4 138 0 . 1 1 0 0 0 UNC13C 440279 broad.mit.edu 37 15 54586242 54586242 + Missense_Mutation SNP T T A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . UNC13C-51 NM_001080534 exon9 c.T3968A p.M1323K GAGAAATGGATGT . 73 4 84 0 . 0 0 0 0 0 RORA 6095 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 60797800 60797800 + Silent SNP C C T rs199818399 TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . RORA-290 NM_134260 exon7 c.G948A p.S316S CAGATGCGATTTA . 99 31 109 0 . 18 12 6 0 0 IGDCC4 57722 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 65703500 65703500 + Silent SNP C C A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . IGDCC4-93 NM_020962 exon2 c.G279T p.L93L CAGCCACAGGGAA . 195 62 157 0 . 0 0 0 0 0 ARIH1 25820 broad.mit.edu 37 15 72873082 72873082 + Missense_Mutation SNP C C A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ARIH1-226 NM_005744 exon12 c.C1226A p.A409E CTAGGGCAGCCCT . 90 6 93 1 . 0 0 0 0 0 SLC28A1 9154 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 85438269 85438269 + Missense_Mutation SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . SLC28A1-93 NM_201651 exon6 c.C376T p.R126C GGCCACCGCCTGC . 151 40 122 0 . 0 0 0 0 0 MSLN 10232 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 818658 818658 + Silent SNP G G A rs201197109 TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . MSLN-91 NM_013404 exon17 c.G1818A p.S606S CCTCTCGGGGACG . 63 19 43 0 G|0.999;A|0.001 0 0 0 0 0 SPNS1 83985 broad.mit.edu 37 16 28992830 28992830 + Missense_Mutation SNP T T C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . SPNS1-90 NM_001142451 exon6 c.T703C p.F235L CTGCTGTTCCTGG . 128 3 99 0 . 86 85 1 0 0 LONP2 83752 ucsc.edu 37 16 48295433 48295433 + Silent SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . LONP2-90 NM_031490 exon5 c.G822A p.E274E GCTAGAGAAAAAA . 260 2 223 0 . 20 14 6 0 0 SALL1 6299 broad.mit.edu 37 16 51171231 51171231 + Missense_Mutation SNP T T G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . SALL1-98 NM_002968 exon3 c.A3767C p.Q1256P CCGTTCTGAATGA . 95 4 87 0 . 0 0 0 0 0 EDC4 23644 broad.mit.edu 37 16 67917881 67917881 + Missense_Mutation SNP C C A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . EDC4-92 NM_014329 exon29 c.C4036A p.H1346N GTGATGCACCTGG . 114 8 54 2 . 213 202 10 0 1 NTN1 9423 broad.mit.edu;bcgsc.ca 37 17 9143050 9143050 + Missense_Mutation SNP G G C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . NTN1-90 NM_004822 exon7 c.G1580C p.R527P CGAGCCGCATCCG . 128 60 163 3 . 0 0 0 0 0 MYO15A 51168 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 18062646 18062646 + Missense_Mutation SNP A A G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . MYO15A-97 NM_016239 exon53 c.A9214G p.T3072A ATGGCCACCGACA . 83 33 101 0 . 0 0 0 0 0 LRRC37B 114659 broad.mit.edu 37 17 30348897 30348897 + Silent SNP C C T rs200519924 TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . LRRC37B-92 NM_052888 exon1 c.C732T p.N244N GGTGAACGCAGAT . 105 4 118 0 C|0.999;T|0.000 1 1 0 0 0 LASP1 3927 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 37070576 37070576 + Splice_Site SNP A A C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . LASP1-522 NM_006148 exon5 c.358-2A>C . CCTTGCAGATAAA . 385 90 259 0 . 0 0 0 0 0 ARL4D 379 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 41477602 41477602 + Missense_Mutation SNP T T C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ARL4D-228 NM_001661 exon2 c.T502C p.C168R CAAGGCTGCAGCG . 68 24 60 0 . 3 2 1 0 0 HEXIM2 124790 broad.mit.edu;bcgsc.ca 37 17 43247039 43247039 + Missense_Mutation SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . HEXIM2-90 NM_144608 exon4 c.G724A p.G242S TGCACCGGCCAGC . 138 7 119 1 . 12 11 1 0 0 KANSL1 284058 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 44249233 44249233 + Missense_Mutation SNP T T C rs149661150 TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . . NM_001193466 exon2 c.A277G p.K93E ACTCCTTTGAGGG . 206 54 216 1 T|1.000;C|0.000 7 6 1 0 0 EVPL 2125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 74004100 74004100 + Missense_Mutation SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . EVPL-93 NM_001988 exon22 c.C5186T p.S1729L GGCCCCGAGGTGG . 119 33 81 0 . 0 0 0 0 0 ST6GALNAC1 55808 ucsc.edu;bcgsc.ca 37 17 74625598 74625598 + Silent SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ST6GALNAC1-90 NM_018414 exon2 c.G327A p.P109P CTCCTCCGGCGGT . 240 55 212 2 . 1 0 1 0 0 ST6GALNAC1 55808 broad.mit.edu 37 17 74625786 74625786 + Missense_Mutation SNP G G T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ST6GALNAC1-90 NM_018414 exon2 c.C139A p.R47S CTGTGCGTTGATG . 49 8 66 0 . 0 0 0 0 0 B3GNTL1 146712 hgsc.bcm.edu 37 17 80915250 80915257 + Frame_Shift_Del DEL GGCAGTCA GGCAGTCA - novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 GGCAGTCA GGCAGTCA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . B3GNTL1-92 NM_001009905 exon9 c.839_846del p.280_282del GCTGCCGGCAGTC . 202 0 71 2 . 0 0 0 0 0 TCF3 6929 hgsc.bcm.edu 37 19 1619339 1619339 + Silent SNP T T C rs8140 bycluster;byfrequency;byhapmap;by1000genomes TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . TCF3-721 NM_003200 exon15 c.A1302G p.S434S GCCCAGTGACATG . 17 5 0 0 T|0.403;C|0.597 18 18 0 0 0 C19orf10 56005 hgsc.bcm.edu 37 19 4670313 4670313 + Missense_Mutation SNP C C G rs2270090 byfrequency TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . C19orf10-90 NM_019107 exon1 c.G34C p.G12R TCGCGCCGACGCC . 20 14 2 0 C|0.752;G|0.248 26 13 13 0 0 EVI5L 115704 broad.mit.edu 37 19 7911501 7911501 + Missense_Mutation SNP T T C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . EVI5L-91 NM_001159944 exon1 c.T73C p.S25P CCAACCTCTGACT . 104 4 87 0 . 6 6 0 0 0 CD320 51293 hgsc.bcm.edu 37 19 8373152 8373152 + Missense_Mutation SNP T T C rs2232775 byfrequency TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . CD320-90 NM_001165895 exon1 c.A23G p.Q8R CCAACCTGCGCCA . 59 23 1 0 T|0.852;C|0.148 44 29 15 0 0 KANK3 256949 hgsc.bcm.edu 37 19 8399628 8399628 + Silent SNP A A G rs710949 byfrequency TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . KANK3-90 NM_198471 exon3 c.T1083C p.S361S CTCCAGACTGGCG . 6 6 0 0 A|0.411;G|0.589 0 0 0 0 0 PRAM1 84106 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 8555234 8555236 + In_Frame_Del DEL CAT CAT - novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 CAT CAT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . . NM_032152 exon9 c.1961_1963del p.654_655del AGTCGACATCATC . 185 35 126 0 . 0 0 0 0 0 NACC1 112939 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 13246265 13246265 + Missense_Mutation SNP C C G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . NACC1-90 NM_052876 exon2 c.C244G p.L82V CAGATCCTCAGCT . 344 51 202 0 . 14 9 5 0 0 JAK3 3718 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 17954268 17954268 + Missense_Mutation SNP T T C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . JAK3-2418 NM_000215 exon4 c.A341G p.K114R TGGCACTTCTCCA . 350 57 212 0 . 0 0 0 0 0 RGS9BP 388531 hgsc.bcm.edu 37 19 33167455 33167455 + Missense_Mutation SNP G G T rs259290 byfrequency TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . RGS9BP-90 NM_207391 exon1 c.G286T p.A96S CGACGCGCGCTGG . 7 7 0 0 G|0.540;T|0.460 0 0 0 0 0 NUMBL 9253 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 41175846 41175846 + Silent SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . NUMBL-637 NM_004756 exon9 c.C1116T p.A372A AGCACTGGCAAAA . 175 34 104 0 . 6 6 0 0 0 PSG9 5678 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 43772123 43772123 + Silent SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PSG9-92 NM_002784 exon2 c.G243A p.S81S TATATACGATATA . 167 28 161 0 . 0 0 0 0 0 ERCC2 2068 hgsc.bcm.edu 37 19 45867259 45867259 + Missense_Mutation SNP C C T rs1799793 byfrequency TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ERCC2-848 NM_000400 exon10 c.G934A p.D312N CTTCGTCGGGCAG . 23 14 0 0 C|0.804;T|0.196 15 6 9 0 0 PNMAL2 57469 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 46997223 46997223 + Silent SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PNMAL2-1 NM_020709 exon1 c.C1500T p.N500N CCCCTCGTTGGAC . 83 11 76 0 . 7 5 2 0 0 TMEM143 55260 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 48866617 48866617 + Missense_Mutation SNP G G C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . TMEM143-90 NM_018273 exon2 c.C195G p.D65E GGCCCAGTCGCGG . 90 19 66 0 . 7 4 3 0 0 NAPSA 9476 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 50865552 50865552 + Silent SNP G G C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . NAPSA-90 NM_004851 exon2 c.C102G p.V34V AGGTTGGACTCGA . 82 17 67 0 . 0 0 0 0 0 ASPDH 554235 hgsc.bcm.edu 37 19 51015404 51015404 + Missense_Mutation SNP T T C rs12977172 byfrequency TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ASPDH-90 NM_001114598 exon6 c.A797G p.Q266R AGGCTCTGCCAGA . 14 14 0 0 T|0.228;C|0.772 0 0 0 0 0 LRRC4B 94030 hgsc.bcm.edu 37 19 51021057 51021057 + Missense_Mutation SNP A A G rs61751957 TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . LRRC4B-205 NM_001080457 exon3 c.T1913C p.V638A CTGGCCACGGCGG . 25 6 1 0 A|0.777;G|0.223 0 0 0 0 0 ZNF616 90317 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 52620097 52620098 + Frame_Shift_Del DEL TT TT - novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 TT TT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ZNF616-90 NM_178523 exon4 c.319_320del p.107_107del TTATCATTTGTTT . 196 37 136 0 . 0 0 0 0 0 LILRA3 11026 ucsc.edu 37 19 54803750 54803750 + Missense_Mutation SNP G G T rs149807835 byfrequency TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . LILRA3-91 NM_001172654 exon3 c.C74A p.P25H GGGAGGGGCCCTG . 66 6 58 0 G|0.970;T|0.030 0 0 0 0 0 ZNF628 89887 hgsc.bcm.edu 37 19 55993260 55993260 + Missense_Mutation SNP A A G rs34864744 TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ZNF628-22 NM_033113 exon3 c.A700G p.T234A CCGGGTACCGCCT . 11 11 0 0 A|0.270;G|0.730 0 0 0 0 0 ZNF814 730051 ucsc.edu;bcgsc.ca;mdanderson.org 37 19 58385748 58385748 + Missense_Mutation SNP G G A rs145250945 TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . . NM_001144989 exon3 c.C1010T p.A337V AAGCTAGCATATT . 207 70 110 0 . 2 2 0 0 0 ZNF814 730051 ucsc.edu;bcgsc.ca 37 19 58385762 58385762 + Silent SNP C C G rs199732634 TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . . NM_001144989 exon3 c.G996C p.S332S GCTAAACGATTTC . 176 50 96 1 . 0 0 0 0 0 CMPK2 129607 hgsc.bcm.edu 37 2 7005369 7005369 + Silent SNP A A G rs11678810 TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . CMPK2-68 NM_001256478 exon1 c.T459C p.C153C CTCCTGACAGGCG . 15 15 0 0 A|0.003;G|0.997 0 0 0 0 0 RAD51AP2 729475 broad.mit.edu;bcgsc.ca 37 2 17699028 17699028 + Missense_Mutation SNP G G T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . RAD51AP2-23 NM_001099218 exon1 c.C655A p.P219T TTGATGGCACAAC . 79 5 66 0 . 0 0 0 0 0 ITSN2 50618 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 24522788 24522788 + Missense_Mutation SNP T T C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ITSN2-539 NM_147152 exon12 c.A1334G p.E445G CGTCTTTCTATGT . 75 19 55 0 . 0 0 0 0 0 OTOF 9381 hgsc.bcm.edu;bcgsc.ca 37 2 26684681 26684683 + In_Frame_Del DEL TCT TCT - novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 TCT TCT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . OTOF-135 NM_194248 exon43 c.5414_5416del p.1805_1806del TGACGATCTTCTC . 341 75 224 0 . 0 0 0 0 0 OTOF 9381 broad.mit.edu 37 2 26696027 26696027 + Missense_Mutation SNP G G C rs199904558 TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . OTOF-135 NM_194248 exon29 c.C3706G p.R1236G CCGAGCGGTCTGG . 137 5 92 1 G|0.999;C|0.001 0 0 0 0 0 CRIM1 51232 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 36739479 36739479 + Missense_Mutation SNP G G T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . CRIM1-118 NM_016441 exon10 c.G1722T p.K574N CAGTAAGATCTGC . 290 82 205 0 . 0 0 0 0 0 CCDC142 84865 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 74701812 74701812 + Missense_Mutation SNP C C G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . CCDC142-68 NM_032779 exon9 c.G2093C p.S698T AGTGTGCTTTGCA . 117 19 89 0 . 8 7 1 0 0 SLC35F5 80255 broad.mit.edu 37 2 114512866 114512869 + Frame_Shift_Del DEL ACAC ACAC - novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . SLC35F5-90 NM_025181 exon3 c.146_149del p.49_50del ACAAATACACACA . 78 7 65 0 . 0 0 0 0 0 DDX18 8886 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 118575133 118575133 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . DDX18-290 NM_006773 exon2 c.G199T p.E67X TTATCAGAAACTC . 155 31 135 0 . 4 4 0 0 0 CNTNAP5 129684 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 125285031 125285031 + Missense_Mutation SNP C C A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . CNTNAP5-524 NM_130773 exon10 c.C1644A p.D548E CAAAGACAGGTAA . 97 23 108 0 . 0 0 0 0 0 ARHGAP15 55843 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 144245049 144245049 + Missense_Mutation SNP A A C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ARHGAP15-653 NM_018460 exon9 c.A811C p.K271Q CAAGAAAAAGGAC . 48 14 35 0 . 1 1 0 0 0 FMNL2 114793 hgsc.bcm.edu;bcgsc.ca 37 2 153476031 153476031 + Missense_Mutation SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . FMNL2-516 NM_052905 exon15 c.G1636A p.G546S CAAAATGGTCCAG . 52 10 59 0 . 0 0 0 0 0 KCNH7 90134 broad.mit.edu;bcgsc.ca 37 2 163241222 163241222 + Missense_Mutation SNP C C G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . KCNH7-95 NM_033272 exon13 c.G2938C p.D980H TTTTATCTATGTG . 201 8 132 0 . 0 0 0 0 0 CCDC141 285025 broad.mit.edu 37 2 179721022 179721022 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . CCDC141-78 NM_173648 exon18 c.C2827T p.Q943X GAATTTGATATTT . 101 6 77 0 . 0 0 0 0 0 CASP8 841 broad.mit.edu 37 2 202137439 202137440 + Frame_Shift_Del DEL TG TG - novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . CASP8-660 NM_001080125 exon4 c.667_668del p.223_223del AGAGTCTGTGCCC . 107 11 68 0 . 0 0 0 0 0 CYP20A1 57404 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 204143326 204143326 + Missense_Mutation SNP A A G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . CYP20A1-90 NM_177538 exon7 c.A710G p.N237S TAAGGAACATCAT . 342 62 313 0 . 19 13 6 0 0 VWC2L 402117 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 215279234 215279234 + Missense_Mutation SNP G G T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . . NM_001080500 exon2 c.G317T p.C106F GATGCTGTCCTGA . 112 33 80 0 . 0 0 0 0 0 ZNF142 7701 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 219508012 219508012 + Missense_Mutation SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ZNF142-137 NM_001105537 exon8 c.C3227T p.S1076F GGAGCAGAGTCCC . 222 46 154 1 . 1 0 1 0 0 CCDC108 255101 broad.mit.edu 37 2 219896232 219896232 + Missense_Mutation SNP A A G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . CCDC108-94 NM_194302 exon7 c.T794C p.F265S CAGAAAAAGGCCT . 588 12 403 1 . 0 0 0 0 0 TRIP12 9320 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 230656613 230656613 + Missense_Mutation SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . TRIP12-572 NM_004238 exon28 c.G4159A p.A1387T TACCAGCTCTGCC . 255 126 161 0 . 14 9 5 0 0 NMUR1 10316 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 232393591 232393591 + Silent SNP C C A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . NMUR1-523 NM_006056 exon2 c.G141T p.L47L GAGTCTCAGTGCC . 209 22 162 1 . 0 0 0 0 0 DIS3L2 129563 broad.mit.edu 37 2 233194545 233194545 + Missense_Mutation SNP T T A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . DIS3L2-136 NM_152383 exon15 c.T1762A p.L588M ATGCTCTTGGCCA . 74 3 57 0 . 28 28 0 0 0 KIF1A 547 hgsc.bcm.edu 37 2 241696843 241696843 + Missense_Mutation SNP C C A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . KIF1A-91 NM_001244008 exon27 c.G2751T p.E917D CTCATCCTCCTCC . 227 12 165 0 . 0 0 0 0 0 SLC4A11 83959 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 3214626 3214626 + Silent SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . SLC4A11-91 NM_001174090 exon6 c.C675T p.I225I CCCTTGGATGGTA . 100 36 92 0 . 0 0 0 0 0 PCSK2 5126 broad.mit.edu 37 20 17341187 17341187 + Missense_Mutation SNP G G T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PCSK2-157 NM_002594 exon4 c.G407T p.G136V ATACTGGGCAAGC . 201 7 176 0 . 0 0 0 0 0 HNF4A 3172 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 43057001 43057001 + Missense_Mutation SNP C C A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . HNF4A-227 NM_178849 exon9 c.C1156A p.H386N CATGCCCACCACC . 119 48 89 0 . 1 1 0 0 0 KCNS1 3787 bcgsc.ca 37 20 43727108 43727108 + Missense_Mutation SNP A A G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . KCNS1-90 NM_002251 exon4 c.T305C p.F102S AAGTAGAATTCGC . 146 6 91 0 . 0 0 0 0 0 SLMO2 51012 broad.mit.edu 37 20 57613555 57613555 + Missense_Mutation SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . SLMO2-45 NM_001256403 exon2 c.G167A p.S56N TCTGTGCTGAGAA . 74 3 76 0 . 23 23 0 0 0 OGFR 11054 hgsc.bcm.edu 37 20 61444569 61444569 + Silent SNP A A G rs3204348 byfrequency;by1000genomes TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . OGFR-68 NM_007346 exon7 c.A1602G p.P534P CGAGCCAGCCGAG . 70 13 25 0 A|0.979;G|0.021 211 168 43 0 0 OGFR 11054 hgsc.bcm.edu 37 20 61444633 61444633 + Missense_Mutation SNP G G A rs75570150 TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . OGFR-68 NM_007346 exon7 c.G1666A p.E556K CCAGCCGAGAGCC . 47 12 3 0 . 146 146 0 0 0 OGFR 11054 hgsc.bcm.edu 37 20 61444637 61444637 + Missense_Mutation SNP G G C rs78981100 TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . OGFR-68 NM_007346 exon7 c.G1670C p.S557T CCGAGAGCCCATC . 42 10 3 0 . 140 140 0 0 0 DSCAM 1826 broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 41539177 41539177 + Missense_Mutation SNP T T C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . DSCAM-101 NM_001271534 exon16 c.A2986G p.I996V ATGATATAGGCTC . 116 30 131 1 . 0 0 0 0 0 SLC25A18 83733 broad.mit.edu 37 22 18070006 18070006 + Missense_Mutation SNP G G C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . SLC25A18-90 NM_031481 exon8 c.G514C p.E172Q GCCTGGGAGCTGC . 54 4 67 0 . 0 0 0 0 0 PRRT3 285368 bcgsc.ca 37 3 9990800 9990800 + Missense_Mutation SNP G G C rs59465469 byfrequency TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PRRT3-90 NM_207351 exon2 c.C1000G p.R334G ACGGCCGATCAGG . 7 6 13 0 G|0.674;C|0.326 4 1 3 0 0 FANCD2 2177 bcgsc.ca 37 3 10108898 10108898 + Silent SNP A A G rs77246387 byfrequency TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . FANCD2-229 NM_001018115 exon26 c.A2391G p.V797V GATTGTAAATGCC . 96 6 89 0 A|0.909;G|0.091 0 0 0 0 0 FANCD2 2177 bcgsc.ca 37 3 10108913 10108913 + Missense_Mutation SNP G G T rs80258959 byfrequency TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . FANCD2-229 NM_001018115 exon26 c.G2406T p.Q802H CTGCCAGGAAACA . 128 6 108 0 G|0.990;T|0.010 3 3 0 0 0 GOLGA4 2803 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 37396592 37396592 + Missense_Mutation SNP A A C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . GOLGA4-93 NM_001172713 exon22 c.A6622C p.T2208P TTGTAGACCATGG . 75 13 58 0 . 0 0 0 0 0 CTNNB1 1499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 41266104 41266104 + Missense_Mutation SNP G G T rs28931589 bycluster TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . CTNNB1-24361 NM_001098209 exon3 c.G101T p.G34V ACTCTGGAATCCA . 218 74 205 1 G|1.000;T|0.000 70 51 19 0 0 COL7A1 1294 broad.mit.edu 37 3 48621170 48621170 + Missense_Mutation SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . COL7A1-160 NM_000094 exon39 c.C4322T p.P1441L TTTCCAGGGGGGC . 64 4 55 0 . 0 0 0 0 0 LRIG1 26018 hgsc.bcm.edu 37 3 66550762 66550762 + Missense_Mutation SNP G G C rs1403626 byfrequency TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . LRIG1-230 NM_015541 exon1 c.C70G p.L24V GCAAAAGCAGCCA . 7 7 0 0 G|0.252;C|0.748 0 0 0 0 0 KIAA1407 57577 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 113697118 113697120 + In_Frame_Del DEL TCT TCT - novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 TCT TCT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . KIAA1407-92 NM_020817 exon16 c.2519_2521del p.840_841del TGAAAATCTTCTT . 99 21 74 0 . 0 0 0 0 0 OSBPL11 114885 broad.mit.edu;bcgsc.ca 37 3 125257453 125257453 + Silent SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . OSBPL11-135 NM_022776 exon11 c.C1866T p.N622N GGTGATGTTGTGC . 140 9 131 0 . 4 3 1 0 0 PLXND1 23129 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 129290586 129290586 + Missense_Mutation SNP T T C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PLXND1-90 NM_015103 exon16 c.A3179G p.N1060S GTGAGGTTGCCGT . 422 84 279 2 . 24 21 3 0 0 TMCC1 23023 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 129370603 129370603 + Missense_Mutation SNP C C G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . TMCC1-91 NM_001017395 exon6 c.G1683C p.K561N CTCCATCTTGGAG . 82 17 78 1 . 23 17 5 0 1 RYK 6259 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 133896850 133896850 + Missense_Mutation SNP T T C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . RYK-1379 . . . . AATTCATGTAAGG . 167 86 142 0 . 23 17 6 0 0 COPB2 9276 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 139077931 139077931 + Missense_Mutation SNP A A T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . COPB2-92 NM_004766 exon19 c.T2393A p.F798Y CCAGGGAACAGGT . 105 21 85 0 . 230 177 52 0 1 ZBTB38 253461 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 141162487 141162487 + Silent SNP A A T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ZBTB38-25 NM_001080412 exon8 c.A1257T p.G419G AAATGGAGGTTCA . 171 48 138 0 . 0 0 0 0 0 CCNL1 57018 hgsc.bcm.edu;bcgsc.ca 37 3 156868131 156868134 + Frame_Shift_Del DEL AACA AACA - novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 AACA AACA - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . CCNL1-659 NM_020307 exon6 c.711_714del p.237_238del AAATCGAACAAAC . 204 39 174 1 . 0 0 0 0 0 CCDC39 339829 ucsc.edu 37 3 180337128 180337128 + Missense_Mutation SNP T T A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . CCDC39-72 NM_181426 exon16 c.A2184T p.Q728H TTCTAGTTGAATT . 34 4 33 0 . 0 0 0 0 0 MCCC1 56922 mdanderson.org 37 3 182733294 182733294 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . MCCC1-92 NM_020166 exon19 c.C2110T p.Q704X TGGCCTGAGCACC . 258 45 150 4 . 32 29 3 0 0 VWA5B2 90113 hgsc.bcm.edu 37 3 183959508 183959508 + Silent SNP A A C rs28606531 byfrequency;by1000genomes TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . . NM_138345 exon19 c.A3411C p.P1137P GGGGCCAGGCCAG . 27 12 2 0 A|0.927;C|0.073 4 2 2 0 0 IGF2BP2 10644 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 185407396 185407396 + Missense_Mutation SNP C C G rs148304949 alternate_allele TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . IGF2BP2-226 NM_001007225 exon6 c.G424C p.G142R GATGCCCGCTTAG . 319 41 221 2 C|1.000;T|0.000 17 14 3 0 0 OTOP1 133060 broad.mit.edu 37 4 4228274 4228282 + In_Frame_Del DEL CCACAGCAG CCACAGCAG - rs75328065 alternate_allele TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . OTOP1-92 NM_177998 exon1 c.310_318del p.104_106del CAGCATCCACAGC . 63 11 12 0 . 0 0 0 0 0 ARAP2 116984 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 36130245 36130245 + Missense_Mutation SNP C C G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ARAP2-93 NM_015230 exon21 c.G3550C p.D1184H TCACATCTTCAAG . 209 72 222 0 . 0 0 0 0 0 KIAA1211 57482 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 57180955 57180955 + Missense_Mutation SNP G G T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . KIAA1211-70 NM_020722 exon8 c.G1287T p.R429S GGAGAGGCTCGAA . 220 52 221 1 . 0 0 0 0 0 LPHN3 23284 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 62936396 62936396 + Missense_Mutation SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . LPHN3-508 NM_015236 exon23 c.G4180A p.V1394I GAGAGTGTTACCA . 72 31 114 0 . 8 6 2 0 0 ENAM 10117 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 71510144 71510144 + Missense_Mutation SNP G G T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ENAM-93 NM_031889 exon9 c.G3001T p.V1001F GAACAAGTTTTTG . 320 78 296 0 . 0 0 0 0 0 WDFY3 23001 broad.mit.edu 37 4 85623617 85623617 + Missense_Mutation SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . WDFY3-93 NM_014991 exon56 c.C8485T p.R2829C CCTCGCGCACACT . 135 5 126 1 . 3 3 0 0 0 DSPP 1834 bcgsc.ca 37 4 88537270 88537270 + Silent SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . DSPP-90 NM_014208 exon5 c.C3456T p.D1152D CAGCGACAGCAGT . 591 40 610 3 . 0 0 0 0 0 DSPP 1834 ucsc.edu 37 4 88537435 88537435 + Silent SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . DSPP-90 NM_014208 exon5 c.C3621T p.S1207S TGATAGCAGTGAC . 621 86 643 4 . 0 0 0 0 0 DSPP 1834 ucsc.edu 37 4 88537441 88537441 + Silent SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . DSPP-90 NM_014208 exon5 c.C3627T p.D1209D CAGTGACAGCAGT . 624 139 651 4 . 0 0 0 0 0 DSPP 1834 ucsc.edu 37 4 88537456 88537456 + Silent SNP C C T rs111240022 byfrequency TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . DSPP-90 NM_014208 exon5 c.C3642T p.S1214S CAGCAGCGACAGC . 655 311 639 4 . 0 0 0 0 0 NDST4 64579 ucsc.edu 37 4 115769495 115769495 + Splice_Site SNP C C A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . NDST4-94 NM_022569 exon10 c.1817-1G>T . TTGTTCCTGTTAC . 30 4 24 0 . 0 0 0 0 0 ANKRD50 57182 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 125592202 125592202 + Missense_Mutation SNP A A G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ANKRD50-90 NM_020337 exon4 c.T2230C p.C744R TATCACAATGATC . 98 21 95 0 . 0 0 0 0 0 CTNND2 1501 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 11082866 11082866 + Missense_Mutation SNP G G C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . CTNND2-293 NM_001332 exon16 c.C2730G p.C910W CACCGCGCACACC . 135 38 116 1 . 0 0 0 0 0 DROSHA 29102 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 31526222 31526222 + Missense_Mutation SNP C C A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . DROSHA-227 NM_013235 exon4 c.G818T p.R273I GGTGTTCTCCCTC . 205 62 136 1 . 0 0 0 0 0 ZNF131 7690 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 43161463 43161463 + Missense_Mutation SNP G G C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ZNF131-90 NM_003432 exon5 c.G484C p.E162Q TCTGCAGAATCAG . 243 67 214 0 . 3 3 0 0 0 ISL1 3670 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 50680462 50680462 + Missense_Mutation SNP A A C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ISL1-515 NM_002202 exon2 c.A116C p.H39P AATGGCATGCGGC . 259 43 233 0 . 43 27 16 0 0 ANKRD34B 340120 ucsc.edu 37 5 79854554 79854554 + Missense_Mutation SNP T T A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ANKRD34B-69 NM_001004441 exon5 c.A1285T p.R429W CTCGCCTTTCTAA . 29 4 25 0 . 0 0 0 0 0 PCDHA7 56141 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140215777 140215777 + Silent SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PCDHA7-94 NM_031852 exon1 c.C1809T p.Y603Y AGGCTACAACGCG . 561 140 294 0 . 0 0 0 0 0 PCDHAC2 56134 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140389355 140389355 + Missense_Mutation SNP A A G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PCDHAC2-26 NM_018899 exon4 c.A2857G p.I953V CCTGCAATCATCT . 156 42 136 0 . 0 0 0 0 0 ADRA1B 147 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 159344848 159344848 + Silent SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ADRA1B-522 NM_000679 exon1 c.C936T p.I312I CTTCATCGCTCTA . 139 31 92 0 . 0 0 0 0 0 DOCK2 1794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 169097591 169097591 + Missense_Mutation SNP G G C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . DOCK2-97 NM_004946 exon4 c.G214C p.E72Q ACAGTTGAGAAAA . 97 19 68 0 . 0 0 0 0 0 FLT4 2324 broad.mit.edu 37 5 180048764 180048764 + Missense_Mutation SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . FLT4-1490 NM_182925 exon13 c.G1798A p.D600N GCGCATCGTGCAG . 425 8 242 0 . 0 0 0 0 0 PRPF4B 8899 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 4037635 4037635 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PRPF4B-1308 NM_003913 exon3 c.C1243T p.R415X AGAACACGACCTC . 74 26 82 0 . 0 0 0 0 0 HIST1H3E 8353 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 26225400 26225400 + Missense_Mutation SNP G G C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . HIST1H3E-68 NM_003532 exon1 c.G18C p.Q6H TAAGCAGACGGCT . 310 88 300 0 . 0 0 0 0 0 EHMT2 10919 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 31854777 31854777 + Silent SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . EHMT2-91 NM_006709 exon16 c.C2113T p.L705L CCTGCAGCAGCAC . 61 15 52 1 . 0 0 0 0 0 DAAM2 23500 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 39867948 39867948 + Silent SNP C C A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . DAAM2-228 NM_001201427 exon23 c.C2775A p.S925S CTTCTCCGAGCTG . 108 33 92 1 . 12 6 6 0 0 CUL7 9820 broad.mit.edu 37 6 43020160 43020160 + Missense_Mutation SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . CUL7-229 NM_001168370 exon2 c.C523T p.R175W GCTGCCGAAGGGC . 110 4 107 1 . 5 5 0 0 0 PKHD1 5314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 51774212 51774212 + Missense_Mutation SNP C C A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PKHD1-603 NM_170724 exon40 c.G6551T p.G2184V CTGGCTCCCATAT . 177 52 165 0 . 0 0 0 0 0 DST 667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 56336987 56336987 + Missense_Mutation SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . DST-523 NM_015548 exon75 c.C14159T p.S4720F GACCCAGAGGGAT . 182 56 178 0 . 20 16 4 0 0 SYNCRIP 10492 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 86324650 86324650 + Missense_Mutation SNP T T C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . SYNCRIP-92 NM_006372 exon11 c.A1696G p.K566E CAGCTTTGCGCTT . 80 22 122 1 . 53 30 23 0 0 GABRR2 2570 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 89978901 89978901 + Missense_Mutation SNP G G C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . GABRR2-68 NM_002043 exon4 c.C341G p.A114G GAGAAAGCTAGCC . 154 41 161 0 . 1 1 0 0 0 RNF217 154214 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 125404012 125404012 + Missense_Mutation SNP T T G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . RNF217-68 NM_152553 exon9 c.T797G p.F266C CTAGGTTTATTTG . 71 18 59 0 . 0 0 0 0 0 BCLAF1 9774 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 136582461 136582461 + Missense_Mutation SNP T T A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . BCLAF1-228 NM_014739 exon12 c.A2699T p.D900V TCTTCATCTTCAA . 125 15 90 0 . 40 40 0 0 0 MTHFD1L 25902 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 151281517 151281517 + Missense_Mutation SNP A A T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . MTHFD1L-292 NM_001242767 exon18 c.A1913T p.D638V CCAGTGACAAAAG . 226 66 194 0 . 4 3 1 0 0 SCAF8 22828 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 155126521 155126522 + Frame_Shift_Del DEL TG TG - novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 TG TG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . SCAF8-91 NM_014892 exon9 c.882_883del p.294_295del AGAATCTGTGAAC . 91 25 90 0 . 0 0 0 0 0 TBP 6908 broad.mit.edu 37 6 170871004 170871004 + Silent SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . TBP-91 NM_003194 exon3 c.G180A p.Q60Q GCAGCAGCAACAA . 62 8 56 0 . 11 11 0 0 0 TBP 6908 mdanderson.org 37 6 170871043 170871043 + Silent SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . TBP-91 NM_003194 exon3 c.G219A p.Q73Q GCAACAGCAACAG . 64 15 47 1 . 73 61 12 0 0 THSD7A 221981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 11485690 11485690 + Missense_Mutation SNP T T C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . THSD7A-71 NM_015204 exon13 c.A3062G p.H1021R TTACCATGGCTGT . 213 42 159 0 . 0 0 0 0 0 BZW2 28969 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 16734601 16734601 + Missense_Mutation SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . BZW2-92 NM_014038 exon8 c.G794A p.R265H AGGAGCGTCTTTC . 63 15 51 0 . 99 75 24 0 0 SP8 221833 hgsc.bcm.edu;mdanderson.org 37 7 20824953 20824953 + Silent SNP G G C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . SP8-91 NM_182700 exon2 c.C483G p.G161G GCCGCCGCCCCCG . 29 16 11 0 . 0 0 0 0 0 SP4 6671 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 21469550 21469550 + Missense_Mutation SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . SP4-95 NM_003112 exon3 c.C767T p.T256I TAACAACCCTACC . 261 60 193 0 . 0 0 0 0 0 KLHL7 55975 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 23163401 23163401 + Silent SNP G G A rs150640353 TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . KLHL7-90 NM_001172428 exon2 c.G126A p.T42T GAAAACGTTGTGT . 98 18 103 0 G|1.000;A|0.000 1 0 1 0 0 PKD1L1 168507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 47897371 47897371 + Silent SNP A A G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PKD1L1-145 NM_138295 exon28 c.T4422C p.H1474H GTTGTAATGAAGA . 127 26 81 0 . 0 0 0 0 0 ABCA13 154664 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 48327569 48327569 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ABCA13-521 NM_152701 exon20 c.G8849A p.W2950X CTTCCTGGACCAA . 87 25 63 1 . 0 0 0 0 0 GRB10 2887 bcgsc.ca 37 7 50682537 50682537 + Missense_Mutation SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . GRB10-1272 NM_005311 exon9 c.G1025A p.S342N ATGTTGCTGTCCT . 126 6 86 0 . 0 0 0 0 0 CROT 54677 ucsc.edu 37 7 86988623 86988623 + Missense_Mutation SNP A A G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . CROT-280 NM_001143935 exon5 c.A301G p.R101G CTTGAAAGAGCAA . 40 4 63 0 . 8 8 0 0 0 AKAP9 10142 broad.mit.edu 37 7 91667778 91667778 + Missense_Mutation SNP T T C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . AKAP9-755 NM_005751 exon17 c.T4384C p.S1462P GAACTGTCTAGAA . 95 3 130 0 . 1 1 0 0 0 AASS 10157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 121769438 121769438 + Silent SNP A A G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . AASS-92 NM_005763 exon3 c.T364C p.L122L CCAACAAGCCCAT . 24 8 34 0 . 0 0 0 0 0 PODXL 5420 hgsc.bcm.edu 37 7 131241030 131241035 + In_Frame_Del DEL GGCGAC GGCGAC - rs11277659 alternate_allele TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 GGCGAC GGCGAC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PODXL-136 NM_001018111 exon1 c.84_89del p.28_30del TGGGAGGGCGACG . 33 7 2 0 . 0 0 0 0 0 ATP6V0E2 155066 hgsc.bcm.edu 37 7 149571095 149571095 + Missense_Mutation SNP G G A rs79377053 TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . . NM_001100592 exon1 c.G88A p.A30T GGACCCGCGCACC . 23 10 2 0 G|0.870;A|0.130 6 3 3 0 0 CSMD1 64478 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 2857496 2857496 + Silent SNP T T C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . CSMD1-86 NM_033225 exon53 c.A8187G p.Q2729Q AGGCGTTTGTCCA . 129 21 137 0 . 0 0 0 0 0 ANGPT2 285 broad.mit.edu 37 8 6378801 6378801 + Missense_Mutation SNP T T C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ANGPT2-91 NM_001118887 exon4 c.A697G p.K233E CTATTTTTTTTTC . 129 4 107 0 . 3 3 0 0 0 GOT1L1 137362 broad.mit.edu 37 8 37794838 37794838 + Missense_Mutation SNP T T C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . GOT1L1-23 NM_152413 exon4 c.A476G p.K159R AGCTTCTTGGGGT . 123 4 73 0 . 0 0 0 0 0 LSM1 27257 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 38021296 38021298 + In_Frame_Del DEL TTC TTC - novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 TTC TTC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . LSM1-90 NM_014462 exon4 c.292_294del p.98_98del CCTTTGTTCTTCT . 112 26 74 0 . 0 0 0 0 0 SLCO5A1 81796 ucsc.edu 37 8 70617290 70617290 + Missense_Mutation SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . SLCO5A1-94 NM_001146008 exon5 c.G1598A p.G533D TTTATGCCCCCTA . 24 4 20 0 . 0 0 0 0 0 ANGPT1 284 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 108334173 108334173 + Silent SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ANGPT1-521 NM_001199859 exon4 c.G759A p.E253E CATCAGCTCCAGT . 209 39 182 2 . 1 1 0 0 0 CSMD3 114788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 113323220 113323220 + Silent SNP G G T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . CSMD3-1132 NM_198123 exon50 c.C7872A p.V2624V GGCAGGGACTGGC . 127 30 88 0 . 0 0 0 0 0 MAL2 114569 hgsc.bcm.edu 37 8 120220776 120220776 + Splice_Site DEL G G - novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . . NM_052886 exon1 c.64+1G>- . CGCCCCGGGGTCA . 18 18 2 2 . 0 0 0 0 0 SQLE 6713 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 126019726 126019726 + Missense_Mutation SNP C C G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . SQLE-523 NM_003129 exon4 c.C819G p.I273M AGATATCAAGGTG . 120 28 87 0 . 0 0 0 0 0 ZNF696 79943 hgsc.bcm.edu 37 8 144378868 144378868 + Silent SNP A A G rs7386259 byfrequency TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ZNF696-90 NM_030895 exon3 c.A1023G p.R341R CCAGCGACTCCAC . 10 10 0 0 A|0.118;G|0.882 3 0 3 0 0 PLEC 5339 hgsc.bcm.edu 37 8 144998169 144998169 + Silent SNP C C T rs1140522 byfrequency TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PLEC-141 NM_201380 exon31 c.G6339A p.A2113A CTCCGCCGCCAGC . 8 8 0 0 C|0.740;T|0.260 0 0 0 0 0 PLEC 5339 hgsc.bcm.edu 37 8 144998190 144998190 + Silent SNP A A G rs2857829 byfrequency TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PLEC-141 NM_201380 exon31 c.T6318C p.A2106A CCTCGCAGCCTCC . 19 18 0 0 A|0.738;G|0.262 4 0 4 0 0 PLEC 5339 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 144998369 144998369 + Nonsense_Mutation SNP T T A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PLEC-141 NM_201380 exon31 c.A6139T p.K2047X GCCCCTTCTGCCG . 110 40 29 0 . 4 4 0 0 0 MROH1 727957 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 145247210 145247210 + Splice_Site SNP A A C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . . NM_001099281 exon9 c.856-2A>C . CGGAGCAGAGCCT . 46 14 48 0 . 0 0 0 0 0 ZNF517 340385 hgsc.bcm.edu 37 8 146033347 146033347 + Missense_Mutation SNP T T C rs2976653 TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ZNF517-90 NM_213605 exon5 c.T1046C p.V349A GCGGCGTGGGGCA . 14 14 0 0 G|0.992;C|0.006 2 0 2 0 0 ARID3C 138715 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 34627865 34627865 + Silent SNP C C A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ARID3C-91 NM_001017363 exon1 c.G147T p.G49G CTCAGCCCCAACA . 92 51 71 0 . 0 0 0 0 0 C9orf131 138724 broad.mit.edu 37 9 35045280 35045280 + Missense_Mutation SNP A A G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . C9orf131-90 NM_203299 exon2 c.A2654G p.Q885R GGTCTCAGAGAGG . 103 4 88 0 . 0 0 0 0 0 TMEM2 23670 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 74347358 74347358 + Missense_Mutation SNP T T C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . TMEM2-92 NM_013390 exon7 c.A1472G p.N491S ACAATATTCCGGG . 100 28 88 0 . 8 8 0 0 0 C9orf57 138240 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 74674243 74674243 + Missense_Mutation SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . . NM_001128618 exon2 c.G71A p.R24K ATCCTTCTCATTC . 91 18 82 0 . 0 0 0 0 0 KIF27 55582 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 86518378 86518378 + Missense_Mutation SNP T T G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . KIF27-523 NM_017576 exon4 c.A1055C p.E352A TCTGACTCGGGGC . 32 6 35 0 . 0 0 0 0 0 PTPDC1 138639 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 96859984 96859984 + Missense_Mutation SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PTPDC1-227 NM_001253829 exon6 c.C1136T p.S379F CAATGTCTGAGAT . 132 38 124 0 . 0 0 0 0 0 DFNB31 25861 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 117169063 117169063 + Missense_Mutation SNP C C G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . DFNB31-95 NM_001173425 exon9 c.G1808C p.G603A TCTCTCCCCAGCT . 151 30 105 0 . 10 8 2 0 0 TNC 3371 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 117792645 117792645 + Missense_Mutation SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . TNC-517 NM_002160 exon24 c.C5960T p.A1987V AGCATTGCTTGGG . 169 46 113 0 . 1 1 0 0 0 FPGS 2356 hgsc.bcm.edu 37 9 130565267 130565267 + Missense_Mutation SNP A A G rs10760502 byfrequency TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . FPGS-90 NM_004957 exon1 c.A64G p.I22V CGCGGCATAACGA . 8 8 0 0 A|0.235;G|0.765 2 0 2 0 0 GLE1 2733 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 131271255 131271255 + Missense_Mutation SNP C C G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . GLE1-22 NM_001499 exon2 c.C200G p.S67C CTCTGTCTGAGAC . 331 58 215 1 . 9 8 0 1 0 GLE1 2733 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 131271329 131271329 + Missense_Mutation SNP A A G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . GLE1-22 NM_001499 exon2 c.A274G p.S92G GACGCAAGCTCTG . 335 53 202 0 . 7 7 0 0 0 SAT1 6303 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 23803871 23803873 + In_Frame_Del DEL CTT CTT - novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 CTT CTT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . SAT1-554 NM_002970 exon6 c.414_416del p.138_139del CATCAACTTCTAT . 220 55 254 0 . 0 0 0 0 0 PCYT1B 9468 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 24593415 24593415 + Missense_Mutation SNP C C G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PCYT1B-130 NM_004845 exon7 c.G729C p.Q243H TTGGTTCTGGAAA . 97 22 103 0 . 0 0 0 0 0 MAGEB6 158809 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 X 26212978 26212978 + Missense_Mutation SNP G G C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . MAGEB6-133 NM_173523 exon2 c.G1015C p.D339H GTGCAAGATAAGT . 456 102 367 0 . 0 0 0 0 0 GPR82 27197 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 41587121 41587121 + Missense_Mutation SNP G G T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . GPR82-110 NM_080817 exon3 c.G842T p.C281F ATAACTGTCAGCA . 164 31 164 0 . 0 0 0 0 0 DGKK 139189 broad.mit.edu 37 X 50213274 50213274 + RNA SNP G G A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . DGKK-227 . . . . GGCTCTGGGACCG . 15 4 19 0 . 0 0 0 0 0 SMC1A 8243 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 53410124 53410124 + Silent SNP C C T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . SMC1A-232 NM_006306 exon20 c.G3024A p.Q1008Q CAGCTTCTGCTGC . 113 33 95 0 . 7 6 1 0 0 HUWE1 10075 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 53591626 53591626 + Missense_Mutation SNP A A C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . HUWE1-280 NM_031407 exon51 c.T6938G p.V2313G TCTGCCACCTCTG . 128 21 132 2 . 0 0 0 0 0 SATL1 340562 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 84362926 84362926 + Missense_Mutation SNP C C A novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . SATL1-175 NM_001012980 exon1 c.G1049T p.G350V GGTGGACCTGGTT . 363 84 312 1 . 0 0 0 0 0 DACH2 117154 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 85950071 85950071 + Missense_Mutation SNP G G T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . DACH2-136 NM_053281 exon5 c.G820T p.A274S CCATTTGCTGCAC . 328 79 341 0 . 0 0 0 0 0 IRS4 8471 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 X 107979446 107979446 + Silent SNP G G T novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . IRS4-623 NM_003604 exon1 c.C129A p.L43L CCCAATGAGTGCG . 111 23 115 0 . 0 0 0 0 0 PAQR4 124222 broad.mit.edu 37 16 3019781 3019782 + Frame_Shift_Ins INS - - C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . PAQR4-68 NM_152341 exon1 c.106_107insC p.S36fs AGCGGCTCGGGCT . 204 7 65 0 . 0 0 0 0 0 KRTAP9-1 728318 hgsc.bcm.edu 37 17 39346616 39346617 + In_Frame_Ins INS - - AGCCTAGCTGTGGGTCCAGCTGCTGCC novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . . NM_001190460 exon1 c.478_479insAGCCTAGCTGTGGGTCCAGCTGCTGCC p.Q160delinsQPSCGSSCCQ TGCTGCCAGCCTT . 136 0 134 0 . 0 0 0 0 0 FLJ45079 0 hgsc.bcm.edu;bcgsc.ca 37 17 75879202 75879203 + RNA INS - - CCCA novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . . . . . . GAGAGACCCCACA . 62 13 57 0 . 0 0 0 0 0 ME2 4200 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 18 48434497 48434498 + Frame_Shift_Ins INS - - AGAG novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . ME2-90 NM_001168335 exon3 c.173_174insAGAG p.I58fs CCAAAATAGAGAC . 118 25 96 0 . 0 0 0 0 0 DCAF15 90379 broad.mit.edu 37 19 14071333 14071334 + Frame_Shift_Ins INS - - G novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . DCAF15-90 NM_138353 exon12 c.1688_1689insG p.L563fs AGTGGCTGGTGCC . 542 7 222 0 . 0 0 0 0 0 KIF1A 547 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 241715297 241715298 + Frame_Shift_Ins INS - - CGGAATCT novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . KIF1A-91 NM_001244008 exon11 c.929_930insAGATTCCG p.V310fs GTCAACACGGAAT . 105 8 90 0 . 0 0 0 0 0 MCF2L2 23101 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 183035998 183035999 + Frame_Shift_Ins INS - - C novel TCGA-OR-A5K5-01A-11D-A29I-10 TCGA-OR-A5K5-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx a7ec1b86-9c36-455f-a4f9-f8e82a163b67 eca69aee-715b-48c7-be08-bc78e8190f99 . MCF2L2-293 NM_015078 exon7 c.611_612insG p.E204fs AAGTTTTCGATGG . 199 36 142 0 . 0 0 0 0 0