Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ACTRT2	140625	bcgsc.ca	37	1	2938569	2938569	+	Silent	SNP	C	C	T	rs35806103	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ACTRT2-90	NM_080431	exon1	c.C319T	p.L107L	CAGCCCCTGCTTG	.	109	5	154	2	C|0.963;T|0.037	0	0	0	0	0
LRRC38	126755	broad.mit.edu	37	1	13802325	13802325	+	Missense_Mutation	SNP	T	T	C	rs3013105	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	.	NM_001010847	exon2	c.A874G	p.K292E	CATCCTTGTCCTC	.	81	4	103	1	C|0.487;N|0.000	0	0	0	0	0
MED8	112950	ucsc.edu	37	1	43850152	43850152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	MED8-68	NM_052877	exon8	c.G875A	p.G292E	TTTTTTCCTTCCT	.	128	4	127	1	.	4	3	1	0	0
HRNR	388697	bcgsc.ca	37	1	152189029	152189029	+	Silent	SNP	A	A	G	rs76438416	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	HRNR-93	NM_001009931	exon3	c.T5076C	p.H1692H	AGACCCATGCTGA	.	399	42	575	26	A|0.993;G|0.007	7	7	0	0	0
RABGAP1L	9910	broad.mit.edu	37	1	174210750	174210750	+	Silent	SNP	G	G	A	rs144504710	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	RABGAP1L-540	NM_014857	exon5	c.G672A	p.S224S	TGGTTCGGAAGAA	.	100	4	87	0	G|0.999;A|0.001	6	6	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	6	4	0	0	T|0.229;C|0.771	2	0	2	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	22	19	0	0	C|0.643;T|0.357	0	0	0	0	0
ARID4B	51742	broad.mit.edu	37	1	235377221	235377221	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ARID4B-228	NM_016374	exon17	c.C1704A	p.C568X	TGGATAGCACTCA	.	116	4	118	0	.	6	6	0	0	0
ZP4	57829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	238048868	238048868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ZP4-93	NM_021186	exon8	c.G983A	p.G328D	TAAGAGCCATAGT	.	161	27	160	0	.	0	0	0	0	0
IDI1	3422	hgsc.bcm.edu	37	10	1094906	1094906	+	Missense_Mutation	SNP	C	C	T	rs7091756	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	IDI1-90	NM_004508	exon1	c.G38A	p.C13Y	GCCGCGCAGCCAA	.	7	6	1	0	C|0.981;T|0.019	3	0	3	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	67	11	42	0	.	0	0	0	0	0
NRXN2	9379	broad.mit.edu;bcgsc.ca	37	11	64428611	64428611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	NRXN2-232	NM_015080	exon10	c.G1799T	p.G600V	ATGGAGCCTGGGA	.	35	8	74	0	.	0	0	0	0	0
DPAGT1	1798	broad.mit.edu	37	11	118969143	118969143	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	DPAGT1-221	NM_001382	exon5	c.698delT	p.F233fs	GTGGTGAAAAAAA	.	183	7	215	0	.	0	0	0	0	0
TAS2R43	259289	ucsc.edu	37	12	11244194	11244194	+	Missense_Mutation	SNP	T	T	C	rs71443637	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	TAS2R43-1	NM_176884	exon1	c.A635G	p.H212R	TTACCATGGAGCT	.	29	4	18	0	T|0.599;C|0.401	1	1	0	0	0
SLCO1A2	6579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21445134	21445134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	SLCO1A2-157	NM_134431	exon13	c.C1574A	p.S525Y	GCCAAAGAATAAA	.	51	16	42	0	.	0	0	0	0	0
HNRNPA1	3178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54676958	54676958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	HNRNPA1-93	NM_031157	exon8	c.G847A	p.G283R	TATGGCGGGAGTG	.	97	36	73	0	.	26	17	9	0	0
CLN5	1203	hgsc.bcm.edu	37	13	77566090	77566090	+	Missense_Mutation	SNP	C	C	T	rs77416795		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	CLN5-91	NM_006493	exon1	c.C4T	p.R2C	GTCATGCGCCGGA	.	10	4	0	0	C|0.873;T|0.127	0	0	0	0	0
IRF2BPL	64207	hgsc.bcm.edu	37	14	77493647	77493647	+	Silent	SNP	A	A	G	rs61991619		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	IRF2BPL-90	NM_024496	exon1	c.T489C	p.A163A	CACCGCAGCGGCG	.	4	4	0	0	A|0.819;G|0.181	0	0	0	0	0
MAPKBP1	23005	bcgsc.ca	37	15	42115152	42115152	+	Silent	SNP	C	C	T	rs61729966	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	MAPKBP1-589	NM_001128608	exon29	c.C3348T	p.S1116S	CCCATCCTCCTCA	.	58	4	54	0	C|0.995;T|0.005	5	5	0	0	0
HAGH	3029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1872357	1872357	+	Missense_Mutation	SNP	G	G	T	rs115850237	alternate_allele	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	HAGH-91	NM_005326	exon3	c.C258A	p.D86E	CGCCGCGTCCACG	.	38	10	38	0	G|1.000;A|0.000	0	0	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	8	8	0	0	T|0.007;C|0.993	5	0	5	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	11	11	0	0	G|0.570;T|0.430	0	0	0	0	0
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	21042562	21042562	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	DNAH3-167	NM_017539	exon37	c.C5244G	p.P1748P	AGCCTTGGGGTTG	.	112	20	99	0	.	0	0	0	0	0
FHOD1	29109	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	16	67268118	67268118	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	FHOD1-221	NM_013241	exon13	c.C1488G	p.P496P	GCTCTGGGGTGTT	.	15	8	11	0	.	6	6	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	14	0	1	0	.	0	0	0	0	0
CDT1	81620	broad.mit.edu	37	16	88873552	88873552	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	CDT1-227	NM_030928	exon8	c.A1216C	p.T406P	CCAGCCACCCCGC	.	72	15	19	1	.	2	2	0	0	0
MINK1	50488	hgsc.bcm.edu	37	17	4799079	4799079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	MINK1-943	NM_153827	exon27	c.G3316T	p.G1106C	AAGCAGGGCTGGA	.	70	5	69	0	.	62	62	0	0	0
SOX15	6665	hgsc.bcm.edu	37	17	7492611	7492611	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	SOX15-135	NM_006942	exon1	c.C384A	p.G128G	TCCGGCGCCCGAG	.	67	4	5	0	.	0	0	0	0	0
CD300LG	146894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	41930365	41930365	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	CD300LG-90	NM_145273	exon3	c.C465T	p.T155T	GCAAACCCAGCCC	.	79	15	100	0	.	0	0	0	0	0
QRICH2	84074	bcgsc.ca	37	17	74288472	74288472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	QRICH2-94	NM_032134	exon4	c.A1838G	p.H613R	AAACCATGCTGAT	.	218	15	241	5	.	0	0	0	0	0
QRICH2	84074	bcgsc.ca	37	17	74288508	74288508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	QRICH2-94	NM_032134	exon4	c.A1802T	p.D601V	TGCTGATCTGCAC	.	222	16	253	5	.	1	1	0	0	0
NPTX1	4884	hgsc.bcm.edu	37	17	78449948	78449948	+	Missense_Mutation	SNP	C	C	T	rs144443274		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	NPTX1-90	NM_002522	exon1	c.G299A	p.G100D	GCCTCGCCGGCTC	.	5	4	0	0	C|0.910;T|0.090	0	0	0	0	0
RNF125	54941	hgsc.bcm.edu	37	18	29598847	29598847	+	Silent	SNP	C	C	T	rs34097443	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	RNF125-226	NM_017831	exon1	c.C21T	p.T7T	GAGCACCGACAGC	.	82	30	1	0	C|0.955;T|0.045	3	2	1	0	0
POLRMT	5442	broad.mit.edu	37	19	629898	629898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	POLRMT-92	NM_005035	exon3	c.C464T	p.A155V	GTCAGCGCCTTGA	.	82	13	88	1	.	9	4	5	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9068139	9068139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	MUC16-566	NM_024690	exon3	c.G19307T	p.G6436V	GTCAGGCCAGCAA	.	225	59	199	1	.	0	0	0	0	0
PRKCSH	5589	hgsc.bcm.edu	37	19	11558367	11558367	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	PRKCSH-90	NM_001001329	exon11	c.G963A	p.E321E	GGAGGAGGAGGAA	.	86	7	46	0	.	69	69	0	0	0
LPHN1	22859	broad.mit.edu;bcgsc.ca	37	19	14288434	14288434	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	LPHN1-523	NM_001008701	exon3	c.C193T	p.R65C	CCGTGCGCCCGTA	.	114	5	73	0	.	7	7	0	0	0
ZNF493	284443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	21607539	21607539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ZNF493-516	NM_001076678	exon4	c.C2078T	p.T693I	GCAAAACTTTCTA	.	71	7	64	0	.	7	3	4	0	0
ARHGAP33	115703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36275213	36275213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ARHGAP33-229	NM_052948	exon16	c.C1561A	p.P521T	CTCGACCCTGCAG	.	88	9	67	0	.	1	0	1	0	0
LILRB1	10859	bcgsc.ca	37	19	55143452	55143452	+	Missense_Mutation	SNP	T	T	C	rs1061680	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	LILRB1-137	NM_001081637	exon5	c.T425C	p.I142T	ATGTAATCCTCCA	.	120	8	121	1	T|0.567;C|0.433	5	5	0	0	0
ZNF154	7710	broad.mit.edu	37	19	58213468	58213468	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ZNF154-90	NM_001085384	exon3	c.A849C	p.T283T	ATGATATGTAAAA	.	57	3	57	0	.	0	0	0	0	0
MIR663B	100313824	bcgsc.ca	37	2	133014602	133014602	+	RNA	SNP	G	G	C	rs75245503	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	.	.	.	.	.	CAGACAGGAGGGA	.	84	30	32	2	G|0.500;C|0.500	0	0	0	0	0
KIF16B	55614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	16253901	16253901	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	KIF16B-291	NM_024704	exon26	c.G3951A	p.G1317G	GCTCTACCCCGTC	.	123	34	79	0	.	5	3	2	0	0
MYBL2	4605	broad.mit.edu	37	20	42343869	42343869	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	MYBL2-415	NM_002466	exon13	c.C1920T	p.P640P	CAAGCCCGAGAAG	.	198	5	148	2	.	1	1	0	0	0
APCDD1L	164284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	57036492	57036492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	APCDD1L-227	NM_153360	exon4	c.C860T	p.S287L	CACCCCGAGCTGA	.	170	23	38	0	.	0	0	0	0	0
CABLES2	81928	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	60966395	60966395	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	CABLES2-91	NM_031215	exon9	c.G1206T	p.Q402H	GCGGTTCTGTTTG	.	120	20	92	1	.	11	7	4	0	0
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61537287	61537287	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	DIDO1-96	NM_080797	exon6	c.G1540C	p.V514L	GCTTTACTGCATT	.	87	27	66	0	.	18	12	6	0	0
MN1	4330	broad.mit.edu	37	22	28194900	28194900	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	MN1-993	NM_002430	exon1	c.A1632G	p.Q544Q	CTGCTGTTGCTGT	.	21	5	10	0	.	173	3	169	0	1
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	14	14	0	0	A|0.354;G|0.646	0	0	0	0	0
TADA3	10474	broad.mit.edu	37	3	9831618	9831618	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	TADA3-226	NM_133480	exon3	c.T237G	p.G79G	TCTGTCACCTTTC	.	47	5	53	5	.	92	91	1	0	0
GPX1	2876	broad.mit.edu	37	3	49395674	49395679	+	In_Frame_Del	DEL	GCCGCC	GCCGCC	-	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	GPX1-68	.	.	.	.	GACTGGGCCGCCG	.	35	9	7	0	.	0	0	0	0	0
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	77526667	77526667	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ROBO2-328	NM_002942	exon3	c.C491G	p.T164S	AACCCACCATCTA	.	189	25	207	0	.	0	0	0	0	0
SPICE1	152185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113187717	113187717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	SPICE1-70	NM_144718	exon9	c.A781G	p.R261G	GGAGTCTCTTGAC	.	103	21	73	0	.	3	2	1	0	0
HCLS1	3059	hgsc.bcm.edu;ucsc.edu	37	3	121351315	121351315	+	Silent	SNP	G	G	A	rs80289672	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	HCLS1-90	NM_005335	exon12	c.C1104T	p.P368P	AGGCTCGGGCTCA	.	42	7	36	0	G|0.936;A|0.064	228	133	95	0	0
SI	6476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164709159	164709159	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	SI-104	NM_001041	exon44	c.C5090G	p.A1697G	TTTTGAGCTGGCT	.	127	28	150	0	.	0	0	0	0	0
KLHL6	89857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183225850	183225850	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	KLHL6-93	NM_130446	exon3	c.T906A	p.N302K	CACCTCATTGCCA	.	130	21	109	0	.	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195510833	195510833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	MUC4-90	NM_018406	exon2	c.C7618T	p.R2540C	CGTGACGTGTGGA	.	414	144	417	3	.	0	0	0	0	0
SORCS2	57537	hgsc.bcm.edu	37	4	7725585	7725585	+	Silent	SNP	G	G	A	rs2285779		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	SORCS2-91	NM_020777	exon19	c.G2586A	p.E862E	CGATGAGGCGGTG	.	58	12	53	0	T|0.002;C|0.998	0	0	0	0	0
GPR78	27201	hgsc.bcm.edu	37	4	8583231	8583231	+	Silent	SNP	C	C	A	rs61741008	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	GPR78-516	NM_080819	exon1	c.C522A	p.A174A	CACCGCCACGCTC	.	21	10	2	0	C|0.992;A|0.008	0	0	0	0	0
TECRL	253017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	65145874	65145874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	TECRL-90	NM_001010874	exon12	c.G1008T	p.W336C	TTGTGCCCACAAA	.	46	11	43	0	.	0	0	0	0	0
SLC4A4	8671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	72319242	72319242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	SLC4A4-95	NM_001098484	exon12	c.G1353T	p.K451N	CATAAAGAGGAAA	.	59	24	57	0	.	0	0	0	0	0
FHDC1	85462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	153889150	153889150	+	Silent	SNP	G	G	A	rs146044034		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	FHDC1-136	NM_033393	exon9	c.G1119A	p.T373T	GAACACGGAGGCA	.	97	24	68	0	G|1.000;A|0.000	0	0	0	0	0
PALLD	23022	broad.mit.edu	37	4	169633067	169633067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	PALLD-94	NM_001166108	exon10	c.C1957A	p.P653T	GCCAAACCAAAAC	.	71	3	59	1	.	0	0	0	0	0
PCDHB7	56129	hgsc.bcm.edu	37	5	140554140	140554140	+	Missense_Mutation	SNP	C	C	T	rs13189280		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	PCDHB7-95	NM_018940	exon1	c.C1724T	p.P575L	CCGAGCCGTTGCC	.	43	6	2	0	C|1.000;|0.000	7	7	0	0	0
PCDHB10	56126	hgsc.bcm.edu	37	5	140573844	140573844	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	PCDHB10-92	NM_018930	exon1	c.C1719T	p.T573T	CTGCACCGAGCTG	.	54	14	4	0	.	84	65	19	0	0
SPINK5	11005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	147480929	147480929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	SPINK5-138	NM_001127699	exon14	c.A1232G	p.E411G	CAGAAGAAGAAGA	.	233	35	164	0	.	0	0	0	0	0
SPDL1	54908	bcgsc.ca	37	5	169028481	169028481	+	Missense_Mutation	SNP	T	T	C	rs3797713	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	.	NM_017785	exon11	c.T1522C	p.Y508H	TCTATATACACAC	.	147	6	91	0	T|0.334;C|0.666	5	5	0	0	0
RREB1	6239	hgsc.bcm.edu	37	6	7230680	7230680	+	Missense_Mutation	SNP	G	G	T	rs9502564	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	RREB1-144	NM_001003700	exon10	c.G2348T	p.G783V	GCGGGGGCCACAA	.	7	6	0	0	G|0.546;T|0.454	2	0	2	0	0
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51695775	51695775	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	PKHD1-603	NM_170724	exon52	c.C8186G	p.A2729G	TCAGGGGCAGAGG	.	38	25	47	0	.	0	0	0	0	0
MAP7	9053	hgsc.bcm.edu	37	6	136682172	136682172	+	Missense_Mutation	SNP	G	G	A	rs2076190	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	MAP7-90	NM_001198609	exon12	c.C1762T	p.R588W	CCTCCCGCTCGCG	.	18	14	0	0	G|0.243;A|0.757	5	0	4	1	0
GRID2IP	392862	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	6590955	6590955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	.	NM_001145118	exon1	c.C113T	p.A38V	GCATGCGCGCTGC	.	64	24	12	0	.	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634548	30634548	+	Missense_Mutation	SNP	C	C	T	rs62636572	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	GARS-91	NM_002047	exon1	c.C11T	p.P4L	CCTCTCCGCGTCC	.	21	10	0	0	C|0.986;T|0.014	9	3	6	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	10	10	0	0	C|0.329;G|0.671	37	0	37	0	0
BBS9	27241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	33388714	33388714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	BBS9-230	NM_014451	exon13	c.C1364A	p.A455D	AAAAAGCCAAATT	.	109	21	94	0	.	0	0	0	0	0
NSUN5P2	260294	ucsc.edu	37	7	72420448	72420448	+	RNA	SNP	C	C	G	rs400282	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	NSUN5P2-90	.	.	.	.	GGCATCCATGACA	.	119	15	80	4	C|0.999;G|0.001	44	25	19	0	0
ATP6V0E2	155066	hgsc.bcm.edu	37	7	149571095	149571095	+	Missense_Mutation	SNP	G	G	A	rs79377053		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	.	NM_001100592	exon1	c.G88A	p.A30T	GGACCCGCGCACC	.	21	17	0	0	G|0.870;A|0.130	10	3	7	0	0
EN2	2020	hgsc.bcm.edu	37	7	155251183	155251183	+	Silent	SNP	G	G	A	rs77846527		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	EN2-90	NM_001427	exon1	c.G111A	p.P37P	CAGCCCGGGCGAA	.	12	8	1	0	G|0.911;A|0.089	0	0	0	0	0
CSMD1	64478	broad.mit.edu	37	8	3889601	3889601	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	CSMD1-86	NM_033225	exon4	c.G436T	p.G146X	GATTTCCACAAGT	.	63	10	44	1	.	0	0	0	0	0
CRH	1392	hgsc.bcm.edu	37	8	67089425	67089425	+	Silent	SNP	T	T	G	rs6159	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	CRH-90	NM_000756	exon2	c.A288C	p.G96G	GCTGCCTCCGGCG	.	25	8	1	0	T|0.642;G|0.358	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	10	9	0	0	A|0.118;G|0.882	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	7	6	0	0	G|0.246;A|0.754	6	0	6	0	0
TUSC1	286319	hgsc.bcm.edu	37	9	25678122	25678122	+	Silent	SNP	G	G	C	rs72631814	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	TUSC1-90	NM_001004125	exon1	c.C198G	p.A66A	CAGGTCGGCAAAC	.	26	6	0	0	G|0.807;C|0.193	1	1	0	0	0
CEP78	84131	broad.mit.edu	37	9	80851434	80851434	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	CEP78-69	NM_001098802	exon1	c.G168T	p.A56A	CTGGGCGCCTCTG	.	52	6	27	1	.	0	0	0	0	0
GPR144	347088	broad.mit.edu;bcgsc.ca	37	9	127230891	127230891	+	Missense_Mutation	SNP	G	G	A	rs10760365	byfrequency	TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	.	NM_001161808	exon14	c.G2248A	p.V750M	AGGAAGGTGGTAG	.	66	4	48	0	G|0.465;A|0.535	0	0	0	0	0
ZNF630	57232	ucsc.edu	37	X	47918424	47918424	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	ZNF630-131	NM_001037735	exon5	c.C1407A	p.S469S	CTTCTGGGAAAAG	.	36	4	18	0	.	6	6	0	0	0
NUDT10	170685	broad.mit.edu	37	X	51076024	51076024	+	Silent	SNP	G	G	A	rs2801626		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	NUDT10-90	NM_153183	exon2	c.G207A	p.E69E	CGAAGAGGCGGGA	.	129	6	72	0	.	4	1	3	0	0
RBMX	27316	ucsc.edu	37	X	135961560	135961560	+	Missense_Mutation	SNP	C	C	G	rs80321628		TCGA-OR-A5JV-01A-11D-A29I-10	TCGA-OR-A5JV-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	242948fe-72e8-4487-b3b0-139297360446	b7c4c670-624d-4278-a166-779e9c35cb9e	.	RBMX-131	NM_001164803	exon2	c.G27C	p.K9N	GAAGAGCTTTCCT	.	133	22	73	5	.	106	106	0	0	0