Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
LRRC8B	23507	bcgsc.ca	37	1	90049075	90049075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	LRRC8B-92	NM_015350	exon5	c.G866T	p.C289F	TCGACTGTTCAGT	.	32	4	51	0	.	8	8	0	0	0
HRNR	388697	bcgsc.ca	37	1	152189016	152189016	+	Missense_Mutation	SNP	G	G	A	rs200517377		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	HRNR-93	NM_001009931	exon3	c.C5089T	p.R1697C	ACTGACGGGAGCC	.	613	35	807	13	.	1	1	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	4	4	0	0	T|0.229;C|0.771	4	0	4	0	0
ADARB2	105	hgsc.bcm.edu	37	10	1405402	1405402	+	Missense_Mutation	SNP	C	C	T	rs191180422		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ADARB2-153	NM_018702	exon3	c.G898A	p.E300K	GCCGCTCGGCCGG	.	6	4	1	0	.	0	0	0	0	0
GPRIN2	9721	hgsc.bcm.edu	37	10	47000217	47000217	+	Missense_Mutation	SNP	G	G	A	rs72780221	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	GPRIN2-90	NM_014696	exon3	c.G1337A	p.R446H	TGCGGCGCCCCAG	.	32	15	1	0	G|0.901;A|0.099	0	0	0	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	4	4	0	0	A|0.009;G|0.991	11	0	11	0	0
SLC18A2	6571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	119003690	119003690	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	SLC18A2-90	NM_003054	exon3	c.G330A	p.A110A	CAACGCGTCCGCT	.	121	42	113	0	.	0	0	0	0	0
IFITM3	10410	ucsc.edu	37	11	320649	320649	+	Silent	SNP	G	G	A	rs11553885	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	IFITM3-519	NM_021034	exon1	c.C165T	p.P55P	ATGGTCGGGCACG	.	128	25	124	9	G|0.946;A|0.054	679	654	25	0	0
MUC2	4583	bcgsc.ca	37	11	1093066	1093066	+	Missense_Mutation	SNP	C	C	A	rs56365200		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	MUC2-90	NM_002457	exon30	c.C4885A	p.P1629T	CCAACCCCAACAG	.	56	13	43	0	.	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266696	1266696	+	Silent	SNP	A	A	C	rs4046509	bycluster;byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	.	NM_002458	exon31	c.A8586C	p.P2862P	GGCCCCAATAACC	.	74	52	142	1	A|0.500;C|0.500	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266716	1266716	+	Missense_Mutation	SNP	T	T	C	rs80150964		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	.	NM_002458	exon31	c.T8606C	p.M2869T	TGACCATGGGCTG	.	71	32	155	2	C|1.000;|0.000	0	0	0	0	0
OR5L1	219437	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55579239	55579239	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	OR5L1-73	NM_001004738	exon1	c.G297A	p.V99V	CATGGTGCAATTC	.	168	96	135	1	.	0	0	0	0	0
ARAP1	116985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	72412758	72412758	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ARAP1-91	NM_001040118	exon16	c.C2238T	p.H746H	GCCACTGTGGCTC	.	73	28	76	0	.	23	12	11	0	0
PANX3	116337	broad.mit.edu	37	11	124489781	124489781	+	Missense_Mutation	SNP	C	C	A	rs199566360	alternate_allele	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	PANX3-68	NM_052959	exon4	c.C1129A	p.P377T	TTAGAACCCTCAA	.	119	9	149	3	C|0.999;T|0.001	0	0	0	0	0
RPUSD4	84881	bcgsc.ca	37	11	126081403	126081403	+	Missense_Mutation	SNP	T	T	C	rs2282580	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	RPUSD4-153	NM_001144827	exon1	c.A131G	p.Q44R	AATCTCTGGGCAT	.	80	6	102	0	T|0.608;C|0.392	3	3	0	0	0
KCNA1	3736	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5020979	5020979	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	KCNA1-228	NM_000217	exon2	c.C435A	p.P145P	TCTGCCCGAGAAG	.	117	45	94	1	.	0	0	0	0	0
ATN1	1822	ucsc.edu	37	12	7045912	7045912	+	Silent	SNP	G	G	A	rs144280633	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ATN1-139	NM_001007026	exon5	c.G1482A	p.Q494Q	GCAGCAGCAGCAG	.	111	25	58	0	G|0.972;A|0.028	3117	3037	76	2	2
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	TUBA1C-90	NM_032704	exon4	c.G492A	p.K164K	CAAGAAGTCCAAG	.	255	16	194	13	G|0.998;A|0.002	1493	1011	481	0	1
GNS	2799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	65146525	65146525	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	GNS-514	NM_002076	exon2	c.A205G	p.K69E	TGGTTTTCTTTAG	.	49	9	37	0	.	0	0	0	0	0
DYRK2	8445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	68051422	68051422	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	DYRK2-861	NM_006482	exon3	c.C735T	p.H245H	AGTCCACCAGCAC	.	81	19	55	0	.	14	10	4	0	0
SSH1	54434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109182933	109182933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	SSH1-94	NM_018984	exon15	c.C1981T	p.P661S	CCTCAGGAGCCCC	.	97	49	79	0	.	10	6	4	0	0
ACACB	32	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	109616998	109616999	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ACACB-98	NM_001093	exon9	c.1543_1544del	p.515_515del	GCTGTGTCTCTGT	.	116	26	86	0	.	0	0	0	0	0
IL31	386653	broad.mit.edu;bcgsc.ca	37	12	122657198	122657198	+	Missense_Mutation	SNP	G	G	A	rs146057190	byfrequency;alternate_allele	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	IL31-514	NM_001014336	exon3	c.C256T	p.P86S	TGGCTGGGCTGTG	.	264	11	147	0	G|0.999;T|0.001	0	0	0	0	0
POMP	51371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	29242664	29242664	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	POMP-90	NM_015932	exon4	c.C217G	p.L73V	CAGGGTCTATTTG	.	70	37	93	0	.	194	105	89	0	0
CCDC168	643677	bcgsc.ca	37	13	103410782	103410782	+	Missense_Mutation	SNP	T	T	C	rs1375719	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	.	NM_001146197	exon3	c.A286G	p.I96V	AATTAATAACTGA	.	48	4	55	0	A|0.014;C|0.352	0	0	0	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	7	7	0	0	C|0.372;T|0.628	2	1	1	0	0
DCUN1D2	55208	bcgsc.ca	37	13	114112384	114112384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	DCUN1D2-90	NM_001014283	exon7	c.C740A	p.A247E	GGCCGTGCATATT	.	82	5	84	0	.	10	10	0	0	0
FOXA1	3169	hgsc.bcm.edu	37	14	38061547	38061547	+	Missense_Mutation	SNP	G	G	C	rs112819884	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	FOXA1-226	NM_004496	exon2	c.C442G	p.L148V	GGCCCAGGTTGGA	.	8	8	1	0	G|0.992;C|0.008	0	0	0	0	0
LTK	4058	hgsc.bcm.edu	37	15	41803754	41803754	+	Missense_Mutation	SNP	G	G	A	rs55739813	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	LTK-1377	NM_001135685	exon6	c.C680T	p.P227L	AGCAACGGTTCCA	.	8	8	0	0	G|0.962;A|0.038	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	7	7	0	0	A|0.226;C|0.774	3	0	3	0	0
NEO1	4756	ucsc.edu	37	15	73428301	73428301	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	NEO1-116	NM_001172623	exon5	c.G948T	p.G316G	TGCTGGGACTTAT	.	36	4	36	0	.	1	1	0	0	0
ADAMTS7	11173	bcgsc.ca	37	15	79057989	79057989	+	Missense_Mutation	SNP	C	C	T	rs200769684		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ADAMTS7-226	NM_014272	exon19	c.G4264A	p.E1422K	TTGCCTCGCTCCA	.	81	19	70	6	C|0.999;T|0.001	0	0	0	0	0
CACNA1H	8912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1254107	1254107	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	CACNA1H-67	NM_021098	exon10	c.C2100A	p.C700X	GAGCTGCCCGTAC	.	131	64	71	0	.	31	23	8	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	11	6	1	0	C|0.615;G|0.385	1	1	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	4	4	0	0	T|0.007;C|0.993	9	0	9	0	0
E4F1	1877	broad.mit.edu	37	16	2282180	2282180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	E4F1-187	NM_004424	exon4	c.C424A	p.H142N	GGTGGGCACATCA	.	42	5	8	0	.	3	3	0	0	0
VASN	114990	hgsc.bcm.edu;broad.mit.edu	37	16	4431679	4431679	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	VASN-68	NM_138440	exon2	c.G801A	p.Q267Q	CCTGCAGGAGCTG	.	71	16	11	0	.	1	1	0	0	0
VAT1L	57687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	77918647	77918647	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	VAT1L-90	NM_020927	exon7	c.A1025T	p.Y342F	GGCTCTACAACCA	.	78	7	70	0	.	105	102	3	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	17	0	1	0	.	0	0	0	0	0
C16orf3	750	bcgsc.ca	37	16	90095596	90095596	+	Missense_Mutation	SNP	A	A	G	rs55742939		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	C16orf3-90	NM_001214	exon1	c.T155C	p.I52T	CAGGCTATGGGGC	.	85	7	37	0	A|0.500;G|0.500	0	0	0	0	0
SARM1	23098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26723260	26723260	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	.	NM_015077	exon10	c.C2127A	p.G709G	TGCAGGCTCTGAC	.	41	18	61	0	.	6	3	3	0	0
GPR179	440435	broad.mit.edu	37	17	36483472	36483472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	GPR179-93	NM_001004334	exon11	c.G5980T	p.A1994S	CAGCGGCCCTGCC	.	61	6	80	1	.	0	0	0	0	0
TEN1	100134934	broad.mit.edu	37	17	73987643	73987643	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	.	NM_001113324	exon3	c.G189A	p.E63E	GGTGGAGCCCTTC	.	78	4	99	0	.	39	38	0	0	1
EMILIN2	84034	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	2892375	2892375	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	EMILIN2-93	NM_032048	exon4	c.G2250A	p.S750S	CAGGTCGCATTCC	.	15	9	29	0	.	0	0	0	0	0
RAVER1	125950	broad.mit.edu	37	19	10433923	10433923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	RAVER1-91	NM_133452	exon5	c.C1027T	p.P343S	GCTCGGGGAGGAG	.	108	5	111	0	.	27	27	0	0	0
EMR2	30817	bcgsc.ca	37	19	14877820	14877820	+	Missense_Mutation	SNP	G	G	A	rs74182239		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	EMR2-524	NM_001271052	exon5	c.C457T	p.L153F	GTTTGAGCTTGAA	.	28	18	107	9	A|1.000;|0.000	0	0	0	0	0
MAP1S	55201	hgsc.bcm.edu	37	19	17837425	17837425	+	Missense_Mutation	SNP	C	C	G	rs17710707	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	MAP1S-90	NM_018174	exon5	c.C1232G	p.S411C	TGGCCTCTGTGTG	.	15	14	0	0	C|0.883;G|0.117	10	0	10	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	20	20	1	0	G|0.349;A|0.651	0	0	0	0	0
ZNF814	730051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	.	NM_001144989	exon3	c.C1010T	p.A337V	AAGCTAGCATATT	.	97	31	93	0	.	1	1	0	0	0
ZNF814	730051	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	.	NM_001144989	exon3	c.G996C	p.S332S	GCTAAACGATTTC	.	79	19	83	0	.	0	0	0	0	0
GEN1	348654	hgsc.bcm.edu	37	2	17942677	17942677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	GEN1-359	NM_182625	exon3	c.G176T	p.R59L	TTTTTCGTATCTC	.	72	5	115	0	.	1	1	0	0	0
PSD4	23550	bcgsc.ca	37	2	113956371	113956371	+	Silent	SNP	G	G	C	rs2276561	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	PSD4-229	NM_012455	exon15	c.G2679C	p.T893T	GGCCACGCACTCC	.	34	29	14	1	G|0.570;C|0.430	22	0	22	0	0
BAZ2B	29994	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	160245862	160245862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	BAZ2B-94	NM_013450	exon21	c.C3210A	p.D1070E	CTTTTGGTCTGCT	.	54	5	64	0	.	0	0	0	0	0
GPR155	151556	bcgsc.ca	37	2	175300997	175300997	+	Silent	SNP	G	G	A	rs6757461	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	GPR155-91	NM_001033045	exon17	c.C2460T	p.N820N	ATACTCGTTGGTA	.	91	5	97	0	G|0.734;A|0.266	8	8	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	31	9	0	0	C|0.769;T|0.231	1	0	1	0	0
CHEK2	11200	ucsc.edu	37	22	29091840	29091840	+	Missense_Mutation	SNP	T	T	C	rs74751600		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	CHEK2-1515	NM_001005735	exon12	c.A1246G	p.K416E	AAATCTTGGAGTG	.	113	15	134	4	.	5	5	0	0	0
XPC	7508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14207051	14207051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	XPC-662	NM_004628	exon6	c.A656G	p.Y219C	TTTCGATAGAAGC	.	110	26	127	0	.	11	9	2	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	117	47	13	0	C|0.960;G|0.040	23	10	13	0	0
CRMP1	1400	hgsc.bcm.edu	37	4	5894586	5894586	+	Silent	SNP	G	G	A	rs143304363		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	CRMP1-92	NM_001014809	exon1	c.C111T	p.A37A	CACCGCGGCGAAC	.	23	14	0	0	G|0.946;A|0.054	0	0	0	0	0
SOD3	6649	hgsc.bcm.edu	37	4	24801354	24801354	+	Silent	SNP	C	C	T	rs8192291	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	SOD3-90	NM_003102	exon2	c.C211T	p.L71L	GCCACGCTGGACG	.	26	19	3	0	C|0.777;T|0.223	18	7	11	0	0
NMU	10874	hgsc.bcm.edu	37	4	56502304	56502304	+	Missense_Mutation	SNP	G	G	T	rs35771241		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	NMU-650	NM_006681	exon1	c.C56A	p.A19E	GGGGACGCCGCGG	.	18	13	0	0	G|0.970;T|0.030	1	0	1	0	0
MTHFD2L	441024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	75065574	75065574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	MTHFD2L-91	NM_001144978	exon4	c.A515G	p.H172R	GATTTCATATTAT	.	93	34	59	0	.	8	2	6	0	0
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	85594085	85594085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	WDFY3-93	NM_014991	exon68	c.G10517A	p.C3506Y	TTCTGACAAACAC	.	99	50	66	0	.	23	14	9	0	0
TRAM1L1	133022	broad.mit.edu;bcgsc.ca	37	4	118005441	118005441	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	TRAM1L1-90	NM_152402	exon1	c.A1109T	p.X370L	AAAGATTATGAAG	.	49	18	52	1	.	2	0	2	0	0
CLPTM1L	81037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1334422	1334422	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	CLPTM1L-153	NM_030782	exon7	c.C873G	p.F291L	GACAAAGAAGGTC	.	62	14	60	0	.	32	32	0	0	0
SLC45A2	51151	ucsc.edu;mdanderson.org	37	5	33954511	33954511	+	Silent	SNP	C	C	A	rs2287949	byfrequency;alternate_allele	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	SLC45A2-93	NM_016180	exon4	c.A987T	p.T329T	GAAGGCTGTCCAT	.	390	83	223	1	C|0.922;T|0.078	0	0	0	0	0
PSD2	84249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139197105	139197105	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	PSD2-91	NM_032289	exon5	c.T1056C	p.S352S	CCTCAGTTTCTTC	.	140	33	66	0	.	0	0	0	0	0
PCDHB4	56131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140503194	140503194	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	PCDHB4-93	NM_018938	exon1	c.G1614A	p.P538P	TTCTCCGGCTTTG	.	664	59	173	0	.	0	0	0	0	0
SLC6A7	6534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149589012	149589012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	SLC6A7-90	NM_014228	exon14	c.C1745T	p.S582L	GACCATCGCTGGA	.	462	209	293	1	.	0	0	0	0	0
STC2	8614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	172745041	172745041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	STC2-93	NM_003714	exon4	c.G718A	p.G240R	CTTCCCCGTGGTG	.	102	20	66	0	.	2	1	1	0	0
TBC1D9B	23061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179290951	179290951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	TBC1D9B-154	NM_198868	exon22	c.G3250A	p.D1084N	GCTCGTCCTCCTC	.	101	26	62	0	.	224	164	60	0	0
ATXN1	6310	broad.mit.edu	37	6	16327913	16327915	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ATXN1-93	NM_001128164	exon7	c.627_629del	p.209_210del	TGATGCTGATGCT	.	25	8	25	0	.	0	0	0	0	0
GCM1	8521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	52999074	52999074	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	GCM1-90	NM_003643	exon3	c.A124C	p.K42Q	TGTGTTTGGCATA	.	151	131	192	1	.	0	0	0	0	0
OGFRL1	79627	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	72006483	72006483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	OGFRL1-68	NM_024576	exon6	c.G655T	p.A219S	GCTCGGGCTGTTA	.	42	4	52	0	.	8	8	0	0	0
ALDH8A1	64577	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	135239705	135239705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ALDH8A1-94	NM_022568	exon7	c.C1312A	p.L438M	ACTGCAGCTTCTT	.	141	58	182	1	.	0	0	0	0	0
BCLAF1	9774	ucsc.edu	37	6	136600949	136600949	+	Missense_Mutation	SNP	G	G	A	rs149618892	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	BCLAF1-228	NM_001077440	exon3	c.C56T	p.S19F	GAACTAGACTGTG	.	30	8	26	4	G|0.972;A|0.028	9	9	0	0	0
VIP	7432	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	153077288	153077288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	VIP-90	NM_003381	exon5	c.C355T	p.P119S	GAAGACCCTGTAC	.	49	14	66	0	.	0	0	0	0	0
TCP10	6953	ucsc.edu	37	6	167791549	167791549	+	Missense_Mutation	SNP	T	T	G	rs55819058	bycluster	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	TCP10-89	NM_004610	exon4	c.A311C	p.H104P	GACAGATGTGAAA	.	72	41	311	22	G|1.000;|0.000	4	0	4	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	10	9	0	0	C|0.329;G|0.671	36	0	36	0	0
TECPR1	25851	broad.mit.edu;bcgsc.ca	37	7	97866139	97866139	+	Missense_Mutation	SNP	G	G	T	rs199829801	alternate_allele	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	TECPR1-91	NM_015395	exon10	c.C1130A	p.A377E	CGGGCCGCGATGA	.	81	5	59	0	G|0.999;A|0.000	7	7	0	0	0
KIAA1549	57670	broad.mit.edu	37	7	138555976	138555976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	KIAA1549-369	NM_020910	exon13	c.C4478A	p.P1493Q	GGGATCGGCTGCA	.	20	3	20	0	.	2	2	0	0	0
C7orf34	135927	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142636757	142636757	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	C7orf34-90	NM_178829	exon1	c.C114G	p.F38L	AGTGTTCCTGGTT	.	66	34	48	0	.	0	0	0	0	0
GSTK1	373156	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	142962356	142962356	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	GSTK1-90	NM_001143679	exon4	c.T555C	p.N185N	CCAGAATGAAGAC	.	54	18	37	1	.	15	12	3	0	0
DLGAP2	9228	broad.mit.edu	37	8	1649469	1649469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	DLGAP2-22	NM_004745	exon12	c.G2825T	p.R942L	GGAGGCGCCTCAT	.	144	6	75	0	.	0	0	0	0	0
MYOM2	9172	broad.mit.edu	37	8	2021562	2021562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	MYOM2-95	NM_003970	exon10	c.G1102T	p.A368S	CACAGCGCCTTCC	.	89	4	76	0	.	0	0	0	0	0
BHLHE22	27319	hgsc.bcm.edu	37	8	65493532	65493532	+	Missense_Mutation	SNP	T	T	A	rs62519835		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	BHLHE22-90	NM_152414	exon1	c.T185A	p.L62Q	CGCCCCTGGGCTG	.	24	11	0	0	T|0.935;A|0.065	0	0	0	0	0
CSPP1	79848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	68084742	68084742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	CSPP1-138	NM_024790	exon23	c.G2905T	p.A969S	TTAGACGCTGCCA	.	80	6	45	0	.	4	4	0	0	0
TMEM74	157753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	109796609	109796609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	TMEM74-228	NM_153015	exon2	c.C719T	p.T240M	CCCAGCGTGAGGA	.	114	31	103	0	.	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	14	13	0	0	.	0	0	0	0	0
THEM6	51337	hgsc.bcm.edu	37	8	143809193	143809193	+	Silent	SNP	C	C	T	rs2257840		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	.	NM_016647	exon1	c.C429T	p.G143G	GGACGGCTTCGTG	.	13	11	0	0	C|0.534;T|0.466	14	0	14	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	14	5	2	0	A|0.118;G|0.882	6	4	2	0	0
SCRIB	23513	hgsc.bcm.edu	37	8	144874554	144874554	+	Silent	SNP	T	T	C	rs6991873		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	SCRIB-228	NM_015356	exon32	c.A4350G	p.P1450P	CAGGGGTGGGGGG	.	7	7	0	0	T|0.010;C|0.990	36	0	36	0	0
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu	37	8	144940732	144940732	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	EPPK1-25	NM_031308	exon1	c.G6690A	p.L2230L	GGGCACCAGGACG	.	88	5	36	0	.	0	0	0	0	0
TUSC1	286319	hgsc.bcm.edu	37	9	25678122	25678122	+	Silent	SNP	G	G	C	rs72631814	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	TUSC1-90	NM_001004125	exon1	c.C198G	p.A66A	CAGGTCGGCAAAC	.	13	13	0	0	G|0.807;C|0.193	2	0	2	0	0
TAF1L	138474	broad.mit.edu	37	9	32632961	32632961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	TAF1L-870	NM_153809	exon1	c.C2617T	p.R873C	CTGTGCGTTTGAA	.	121	5	259	0	.	0	0	0	0	0
PNPLA7	375775	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	140356481	140356481	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	PNPLA7-91	NM_001098537	exon32	c.C3658A	p.Q1220K	CGTGCTGGTAGCC	.	41	4	27	0	.	0	0	0	0	0
OTC	5009	bcgsc.ca	37	X	38260574	38260574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	OTC-172	NM_000531	exon5	c.C433A	p.Q145K	TATAAACAATCAG	.	168	15	111	5	.	0	0	0	0	0
RAB40AL	282808	ucsc.edu;bcgsc.ca;mdanderson.org	37	X	102192303	102192303	+	Silent	SNP	G	G	T	rs150070913	byfrequency	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	RAB40AL-92	NM_001031834	exon1	c.G57T	p.L19L	CCTGCTGGTGGGC	.	410	91	249	2	G|0.998;T|0.002	1	1	0	0	0
CSDE1	7812	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	115261240	115261241	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	CSDE1-227	NM_001242891	exon20	c.2481_2482insA	p.N827fs	CATTGAGTTATCT	.	82	35	95	0	.	0	0	0	0	0
KCNN3	3782	broad.mit.edu	37	1	154842199	154842200	+	In_Frame_Ins	INS	-	-	GCTGCTGCTGCT	rs3831942	alternate_allele	TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	KCNN3-91	NM_001204087	exon1	c.242_243insAGCAGCAGCAGC	p.P81delinsQQQQP	TGCGGTGGCTGCT	.	39	12	27	0	.	0	0	0	0	0
KDM6B	23135	broad.mit.edu	37	17	7750177	7750178	+	In_Frame_Ins	INS	-	-	ACCACC	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	KDM6B-205	NM_001080424	exon9	c.752_753insACCACC	p.L251delinsLPP	CACCATTACCACC	.	8	2	11	0	.	0	0	0	0	0
PRKACA	5566	hgsc.bcm.edu	37	19	14204529	14204530	+	In_Frame_Ins	INS	-	-	CTTGGTGAGATCTACCTGCAGGAGGTTCCGCAGCAGGTC	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	PRKACA-978	NM_002730	exon9	c.841_842insGACCTGCTGCGGAACCTCCTGCAGGTAGATCTCACCAAG	p.R281delinsDLLRNLLQVDLTKR	CAAAGCGCTTGGT	.	127	0	170	0	.	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135012429	135012430	+	Missense_Mutation	DNP	TT	TT	AC	novel		TCGA-OR-A5JT-01A-11D-A29I-10	TCGA-OR-A5JT-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac406c92-67af-4d6c-a981-610bd6c674bd	1795e496-6515-464d-9d01-7d391fc0a20e	.	KNDC1-229	NM_152643	exon14	c.T2418C	p.V806D	TGGAGTTGCTTCC	.	4	0	0	0	T|0.470;C|0.530	0	0	0	0	0