Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
C1orf159	54991	broad.mit.edu	37	1	1019753	1019753	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	.	NM_017891	exon9	c.T482C	p.I161T	GGGGGGATCATTG	.	47	8	47	7	.	0	0	0	0	0
SRM	6723	hgsc.bcm.edu	37	1	11119899	11119899	+	Silent	SNP	T	T	C	rs7545802		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SRM-90	NM_003132	exon1	c.A102G	p.S34S	CTGCAGTGACAGG	.	4	4	0	0	T|0.001;C|0.999	44	0	44	0	0
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	19518980	19518980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	UBR4-612	NM_020765	exon10	c.G1198T	p.G400C	CCTCACCACCAGC	.	210	17	179	0	.	0	0	0	0	0
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu	37	1	22191465	22191467	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	GGA	GGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	HSPG2-141	NM_005529	exon36	c.4495_4497del	p.1499_1499del	CGGCACGGAGGAG	.	96	29	10	0	.	0	0	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	5	5	0	0	G|0.061;T|0.939	0	0	0	0	0
TIE1	7075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	43779576	43779576	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TIE1-1404	NM_005424	exon14	c.C2346A	p.T782T	TTTAACCCTGGTG	.	300	25	174	0	.	1	1	0	0	0
C1orf87	127795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	60499262	60499262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	C1orf87-154	NM_152377	exon7	c.G915T	p.L305F	AATCTCCAACAGA	.	150	24	135	0	.	0	0	0	0	0
LRRC7	57554	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	70493957	70493957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	LRRC7-163	NM_020794	exon16	c.G1784A	p.R595H	GAGTGCGTGTTGA	.	211	43	203	1	.	0	0	0	0	0
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103487285	103487285	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	COL11A1-586	NM_080629	exon9	c.G1322C	p.G441A	GGTTCTCCTTTCT	.	129	48	110	0	.	17	11	6	0	0
SPAG17	200162	broad.mit.edu	37	1	118642324	118642324	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SPAG17-158	NM_206996	exon6	c.C734A	p.T245N	ACGCTGGTTATAG	.	78	3	75	0	.	0	0	0	0	0
RPRD2	23248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150444740	150444740	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	RPRD2-23	NM_015203	exon11	c.G3316A	p.V1106I	CAGACCGTAGAGT	.	52	8	54	0	.	31	31	0	0	0
SLC27A3	11000	hgsc.bcm.edu	37	1	153748161	153748161	+	Missense_Mutation	SNP	G	G	C	rs34527123	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SLC27A3-91	NM_024330	exon1	c.G329C	p.G110A	CCGAGGGGGGCTG	.	13	7	0	0	G|0.051;C|0.949	5	2	3	0	0
TNR	7143	bcgsc.ca	37	1	175335234	175335234	+	Silent	SNP	C	C	T	rs1385541	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TNR-324	NM_003285	exon11	c.G2094A	p.S698S	GGTCTCCGAGGAG	.	276	7	222	2	C|0.809;T|0.191	0	0	0	0	0
TSEN15	116461	bcgsc.ca	37	1	184023529	184023529	+	Missense_Mutation	SNP	A	A	C	rs1046934	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TSEN15-90	NM_001127394	exon2	c.A177C	p.Q59H	CACCCAAGTTTAT	.	73	4	101	0	A|0.705;C|0.295	18	18	0	0	0
C1orf106	55765	hgsc.bcm.edu	37	1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	rs296520	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	C1orf106-93	NM_018265	exon9	c.C1654T	p.R552C	GAGCTGCGCCGCG	.	8	8	0	0	C|0.242;T|0.758	0	0	0	0	0
PLXNA2	5362	broad.mit.edu	37	1	208225716	208225716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PLXNA2-92	NM_025179	exon15	c.C2949A	p.S983R	CACGCTGCTCCCA	.	94	4	66	1	.	4	4	0	0	0
DNAH14	127602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	225528307	225528307	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	DNAH14-23	NM_001373	exon67	c.G10303C	p.D3435H	TTAGAAGATCAAC	.	213	26	212	0	.	1	1	0	0	0
JMJD4	65094	hgsc.bcm.edu	37	1	227923081	227923081	+	Missense_Mutation	SNP	G	G	A	rs7419238		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	JMJD4-226	NM_023007	exon1	c.C32T	p.A11V	TGCCCCGCCAGCG	.	9	8	0	0	G|0.002;A|0.998	1	0	1	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504669	228504669	+	Silent	SNP	G	G	A	rs61825302	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	OBSCN-403	NM_001271223	exon62	c.G16416A	p.A5472A	CTCTGCGCGGCTC	.	13	11	0	0	G|0.841;A|0.159	0	0	0	0	0
SH3BP5L	80851	hgsc.bcm.edu	37	1	249106348	249106348	+	Silent	SNP	G	G	C	rs202116012		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SH3BP5L-90	NM_030645	exon7	c.C933G	p.A311A	ACCCTCGGCCCCC	.	18	8	0	0	G|0.991;C|0.008	24	17	6	0	1
BICC1	80114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	60273078	60273078	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	BICC1-72	NM_001080512	exon1	c.G175T	p.E59X	AAACTTGAGGCCA	.	477	24	186	0	.	0	0	0	0	0
SFTPD	6441	bcgsc.ca	37	10	81697756	81697756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SFTPD-91	NM_003019	exon8	c.C980T	p.P327L	CCTGTGGGGTAGG	.	141	6	90	0	.	0	0	0	0	0
KIF11	3832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	94397209	94397209	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	KIF11-227	NM_004523	exon16	c.A2067G	p.L689L	TGAACTACAAGAA	.	212	17	155	0	.	4	4	0	0	0
CYP2C8	1558	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	96802824	96802824	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CYP2C8-90	NM_000770	exon7	c.G972A	p.Q324Q	CTCTTCCTGGACT	.	224	44	137	1	.	0	0	0	0	0
PIK3AP1	118788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98408466	98408466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PIK3AP1-519	NM_152309	exon7	c.G1135T	p.A379S	TCTCAGCGATGGT	.	295	60	150	0	.	0	0	0	0	0
PPRC1	23082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	103901266	103901266	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PPRC1-227	NM_015062	exon5	c.C3001G	p.P1001A	CCACCTCCTTTGC	.	95	10	85	0	.	10	6	4	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	5	5	0	0	A|0.009;G|0.991	11	0	11	0	0
MKI67	4288	bcgsc.ca	37	10	129901747	129901747	+	Missense_Mutation	SNP	C	C	T	rs10764749	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	MKI67-519	NM_002417	exon13	c.G8357A	p.R2786Q	CTTGGCCGTCTCC	.	66	5	54	0	C|0.808;T|0.192	6	6	0	0	0
DRD4	1815	hgsc.bcm.edu	37	11	639873	639873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	DRD4-90	NM_000797	exon3	c.G624A	p.M208I	GCTCATGCTGCTG	.	22	7	10	0	.	0	0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1093344	1093344	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	MUC2-90	NM_002457	exon30	c.G5163T	p.P1721P	AACCCCGACACCC	.	157	7	104	1	.	0	0	0	0	0
MUC2	4583	bcgsc.ca	37	11	1093393	1093393	+	Missense_Mutation	SNP	G	G	A	rs199525790		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	MUC2-90	NM_002457	exon30	c.G5212A	p.G1738S	CCCACCGGCACAC	.	170	10	141	6	.	0	0	0	0	0
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	21250963	21250963	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NELL1-155	NM_006157	exon14	c.C1512A	p.C504X	CACCTGCAAACCG	.	277	36	235	0	.	0	0	0	0	0
FERMT3	83706	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63978534	63978534	+	Missense_Mutation	SNP	C	C	G	rs78810429	byfrequency;alternate_allele	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	FERMT3-23	NM_031471	exon4	c.C405G	p.H135Q	CCGGCACCCCGAG	.	88	22	66	0	C|0.993;T|0.007	0	0	0	0	0
PYGM	5837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64518843	64518843	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PYGM-92	NM_005609	exon16	c.C1923T	p.L641L	GACACGGAGGCGG	.	205	52	142	0	.	1	1	0	0	0
SYVN1	84447	hgsc.bcm.edu	37	11	64898229	64898229	+	Silent	SNP	T	T	C	rs111304413	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SYVN1-91	NM_172230	exon11	c.A1008G	p.A336A	CAGCGATGCACGA	.	12	10	0	0	A|0.000;C|0.015;T|0.985	32	12	20	0	0
HTR3A	3359	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	113857492	113857492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	HTR3A-90	NM_213621	exon7	c.C976A	p.P326T	GAGAAACCCGCCC	.	136	12	132	0	.	0	0	0	0	0
GALNT8	26290	bcgsc.ca	37	12	4853806	4853806	+	Missense_Mutation	SNP	A	A	G	rs34776842	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	GALNT8-230	NM_017417	exon4	c.A800G	p.E267G	GCTGGGAAGCTGC	.	140	5	92	0	A|0.927;G|0.073	0	0	0	0	0
PRB3	5544	hgsc.bcm.edu;broad.mit.edu	37	12	11421070	11421070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PRB3-1	NM_006249	exon3	c.G113T	p.G38V	CGTCGTCCTTCTG	.	25	4	18	0	.	0	0	0	0	0
PRB4	5545	hgsc.bcm.edu	37	12	11461804	11461804	+	Missense_Mutation	SNP	C	C	A	rs150367358	byfrequency;alternate_allele	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PRB4-91	NM_001261399	exon3	c.G113T	p.G38V	CGTCGTCCTTCTG	.	56	4	38	0	C|0.999;T|0.001	0	0	0	0	0
C12orf36	283422	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	13526239	13526239	+	RNA	SNP	T	T	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	C12orf36-90	.	.	.	.	TCAGCCTCTGAAT	.	79	12	91	0	.	0	0	0	0	0
PLEKHA5	54477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	19499950	19499950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PLEKHA5-227	NM_001256470	exon24	c.G2732T	p.R911L	CACCTCGTCCTCC	.	113	15	75	0	.	0	0	0	0	0
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29604304	29604304	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	OVCH1-210	NM_183378	exon22	c.A2729G	p.E910G	TGTCTTTCTTCAT	.	78	23	64	0	.	0	0	0	0	0
SCN8A	6334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52188154	52188154	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SCN8A-29	NM_001177984	exon25	c.4402-1G>T	.	TCCCCAGAACAAA	.	97	18	60	0	.	0	0	0	0	0
MYBPC1	4604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	102043128	102043128	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	MYBPC1-94	NM_206819	exon15	c.A1287G	p.G429G	AGAGGGAGCAACA	.	126	22	101	0	.	0	0	0	0	0
ATXN2	6311	hgsc.bcm.edu	37	12	112036797	112036797	+	Silent	SNP	C	C	T	rs4098854		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ATXN2-136	NM_002973	exon1	c.G522A	p.Q174Q	CTGCTGCTGCTGC	.	4	4	0	0	C|0.429;T|0.571	174	164	10	0	0
HECTD4	283450	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	112690234	112690234	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	.	NM_001109662	exon23	c.C3144A	p.R1048R	CTGAGCGCGAACT	.	62	5	50	0	.	0	0	0	0	0
SFSWAP	6433	bcgsc.ca	37	12	132250712	132250712	+	Silent	SNP	G	G	C	rs1051233	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SFSWAP-91	NM_001261411	exon13	c.G2001C	p.L667L	AAAGCTGGCCCAG	.	37	4	39	0	G|0.840;C|0.160	47	47	0	0	0
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	39452353	39452353	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	FREM2-100	NM_207361	exon22	c.T8754C	p.F2918F	GGTGTTTCTATGC	.	133	20	155	0	.	1	1	0	0	0
PCDH8	5100	hgsc.bcm.edu	37	13	53420344	53420344	+	Missense_Mutation	SNP	A	A	G	rs5030685	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PCDH8-153	NM_002590	exon1	c.T2228C	p.V743A	TGCAGCACCGACC	.	16	13	5	0	A|0.947;G|0.053	0	0	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	60	8	17	0	.	13	13	0	0	0
ZNF219	51222	hgsc.bcm.edu	37	14	21560706	21560706	+	Silent	SNP	C	C	G	rs1065496	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ZNF219-90	NM_001102454	exon3	c.G750C	p.P250P	GGGCTCCGGCTCC	.	33	16	3	0	C|0.100;G|0.900	74	33	41	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	.	NM_018139	exon1	c.G1185C	p.A395A	GTCCTCCGCGCGA	.	7	7	0	0	C|0.569;G|0.431	1	0	1	0	0
TBPL2	387332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	55903342	55903342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TBPL2-90	NM_199047	exon2	c.C545A	p.S182Y	GTTATGGATGCCA	.	342	40	218	0	.	0	0	0	0	0
TGFB3	7043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	76447102	76447102	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TGFB3-524	NM_003239	exon1	c.A135C	p.G45G	GATCTGTCCCCTA	.	339	62	194	0	.	7	6	1	0	0
CEP128	145508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	81046735	81046735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CEP128-91	NM_152446	exon19	c.G2839A	p.E947K	CCATTTCTTCATC	.	23	5	32	0	.	0	0	0	0	0
CKB	1152	hgsc.bcm.edu	37	14	103988180	103988180	+	Silent	SNP	G	G	T	rs1136165	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CKB-115	NM_001823	exon4	c.C456A	p.R152R	GATGGCGCGGCGC	.	7	6	0	0	G|0.327;T|0.673	147	73	74	0	0
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105415287	105415287	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	AHNAK2-47	NM_138420	exon7	c.C6501G	p.A2167A	GCCTGGGGCAGAC	.	235	96	140	0	.	0	0	0	0	0
VPS13C	54832	bcgsc.ca	37	15	62243197	62243197	+	Missense_Mutation	SNP	T	T	C	rs11629598	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	VPS13C-92	NM_020821	exon40	c.A4483G	p.I1495V	AGTTAATAATGTG	.	92	6	188	1	T|0.946;C|0.054	0	0	0	0	0
MTFMT	123263	hgsc.bcm.edu	37	15	65321780	65321780	+	Missense_Mutation	SNP	A	A	T	rs188718836		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	MTFMT-24	NM_139242	exon1	c.T172A	p.F58I	GGGCGAACTGGTC	.	24	11	1	0	A|0.995;T|0.005	6	5	1	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	rs2919358	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	.	NM_001101362	exon1	c.C242T	p.A81V	TGCAGGCCGTGGA	.	7	5	0	0	C|0.452;T|0.548	0	0	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369531	65369531	+	Silent	SNP	G	G	T	rs2946642	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	.	NM_001101362	exon1	c.G378T	p.A126A	TGCCGCGCTCTTC	.	5	5	0	0	G|0.479;T|0.521	0	0	0	0	0
CHRNA5	1138	broad.mit.edu;bcgsc.ca	37	15	78882715	78882715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CHRNA5-516	NM_000745	exon5	c.A982G	p.I328V	CTGTCAATTATGG	.	175	49	122	2	.	2	1	1	0	0
SOLH	6650	hgsc.bcm.edu	37	16	597408	597408	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SOLH-523	NM_005632	exon4	c.G570C	p.P190P	GGCCCCGGCCGGC	.	16	7	0	0	.	13	8	5	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	6	5	0	0	T|0.007;C|0.993	2	0	2	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	6	6	0	0	G|0.001;A|0.999	1	0	1	0	0
KCNG4	93107	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	84256305	84256305	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	KCNG4-93	NM_172347	exon3	c.C1078T	p.L360L	GCCCCAGCGTCTG	.	377	97	101	1	.	0	0	0	0	0
USP10	9100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	84806251	84806251	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	USP10-636	NM_001272075	exon13	c.C2115G	p.I705M	GCTTATCAAAAAT	.	124	13	140	0	.	27	18	9	0	0
TRPV3	162514	bcgsc.ca	37	17	3446885	3446885	+	Missense_Mutation	SNP	T	T	C	rs322937	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TRPV3-94	NM_001258205	exon5	c.A349G	p.R117G	GCCGCCTCTTTTT	.	81	7	73	0	T|0.714;C|0.286	0	0	0	0	0
SPNS2	124976	ucsc.edu	37	17	4436657	4436657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SPNS2-68	NM_001124758	exon8	c.G1208T	p.G403V	CCGTGGGCATGCT	.	41	4	13	0	.	1	1	0	0	0
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29664421	29664421	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NF1-3353	NM_001042492	exon43	c.G6463T	p.E2155X	CTGACAGAGTTCT	.	47	32	55	0	.	0	0	0	0	0
GPATCH8	23131	broad.mit.edu;bcgsc.ca	37	17	42477935	42477940	+	In_Frame_Del	DEL	CTGAAA	CTGAAA	-	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	GPATCH8-94	NM_001002909	exon8	c.1505_1510del	p.502_504del	GGGTCTCTGAAAC	.	55	7	83	0	.	0	0	0	0	0
ITGA3	3675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48165662	48165662	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ITGA3-229	NM_002204	exon25	c.A3119C	p.Q1040P	AGAGCCAGCCGTC	.	166	18	142	0	.	12	10	2	0	0
ANKRD40	91369	broad.mit.edu	37	17	48774315	48774315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ANKRD40-90	NM_052855	exon4	c.A946G	p.T316A	ACAGAGTATTGGG	.	108	5	72	1	.	16	16	0	0	0
TMEM104	54868	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72786401	72786401	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TMEM104-90	NM_017728	exon5	c.C312T	p.Y104Y	CAACTACGAGCGG	.	215	44	106	1	.	44	34	10	0	0
FDXR	2232	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72862659	72862659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	FDXR-226	NM_001258012	exon4	c.A431G	p.H144R	CCAGAATGGGCCG	.	419	90	160	1	.	846	606	239	0	1
KIAA0195	9772	bcgsc.ca	37	17	73485707	73485707	+	Silent	SNP	G	G	A	rs34364349	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	KIAA0195-91	NM_014738	exon9	c.G918A	p.G306G	CCCGGGGGTCACT	.	183	6	100	0	G|0.951;A|0.049	21	21	0	0	0
TNRC6C	57690	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	76067213	76067213	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TNRC6C-24	NM_018996	exon7	c.G2826C	p.R942R	GAGCCGGCTGATC	.	331	27	187	0	.	1	1	0	0	0
SEH1L	81929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	12986994	12986994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SEH1L-90	NM_001013437	exon9	c.C1204A	p.H402N	TATCCTCACCCTC	.	66	26	74	0	.	35	19	16	0	0
ANKRD20A5P	440482	bcgsc.ca	37	18	14183680	14183680	+	RNA	SNP	G	G	A	rs75090388	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ANKRD20A5P-90	.	.	.	.	CCAGTGGCCATGT	.	136	20	157	2	G|0.300;A|0.700	0	0	0	0	0
SMAD7	4092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	46447841	46447841	+	Silent	SNP	G	G	A	rs141213977	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SMAD7-414	NM_005904	exon4	c.C1182T	p.T394T	CTGCACGGTAAAG	.	167	54	165	0	G|0.999;A|0.001	14	9	5	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	10	10	0	0	C|0.766;T|0.234	0	0	0	0	0
CACTIN	58509	hgsc.bcm.edu	37	19	3613346	3613346	+	Missense_Mutation	SNP	G	G	A	rs2074789	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	.	NM_021231	exon9	c.C1496T	p.A499V	GGCGCCGCGTCCT	.	4	4	0	0	G|0.535;A|0.465	1	0	1	0	0
CACNA1A	773	hgsc.bcm.edu	37	19	13319693	13319693	+	Silent	SNP	A	A	G	rs16051	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CACNA1A-67	NM_001127221	exon46	c.T6660C	p.H2220H	CGGGGGATGGTGG	.	21	11	0	0	A|0.360;G|0.640	0	0	0	0	0
C19orf57	79173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14000524	14000524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	C19orf57-93	NM_024323	exon6	c.G1145A	p.R382K	AAGGCCCTCCTGT	.	51	10	24	0	.	4	4	0	0	0
PKN1	5585	hgsc.bcm.edu	37	19	14552087	14552087	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PKN1-1481	NM_213560	exon2	c.C172T	p.L58L	CTGAAGCTGAAGG	.	91	8	9	0	.	32	27	5	0	0
GIPC1	10755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14591159	14591159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	GIPC1-226	NM_202468	exon5	c.C613T	p.R205C	AGGTACGGCCTCG	.	312	42	49	0	.	143	112	31	0	0
CYP4F8	11283	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15739164	15739164	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CYP4F8-90	.	.	.	.	AGCCTGCGGTTGC	.	101	20	44	0	.	0	0	0	0	0
INSL3	3640	hgsc.bcm.edu	37	19	17932200	17932200	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	INSL3-90	NM_005543	exon1	c.T116G	p.V39G	GCGCGTACGAAGT	.	47	10	1	0	.	0	0	0	0	0
ZNF675	171392	broad.mit.edu	37	19	23837296	23837296	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ZNF675-228	NM_138330	exon4	c.G439C	p.D147H	ATTTATCACATTG	.	78	3	74	0	.	2	2	0	0	0
NFKBID	84807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36380791	36380791	+	Splice_Site	DEL	C	C	-	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NFKBID-90	NM_139239	exon12	c.888+1G>-	.	TACTTACCCCCTC	.	127	54	46	0	.	0	0	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	19	10	0	0	T|0.545;C|0.455	2	2	0	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	7	7	0	0	C|0.804;T|0.196	19	5	14	0	0
IRF2BP1	26145	hgsc.bcm.edu	37	19	46387941	46387941	+	Silent	SNP	G	G	A	rs200198801		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	IRF2BP1-90	NM_015649	exon1	c.C1092T	p.G364G	GGGTGGGCCACAG	.	10	10	0	0	G|0.994;A|0.006	113	0	113	0	0
GLTSCR2	29997	hgsc.bcm.edu	37	19	48258717	48258717	+	Missense_Mutation	SNP	A	A	G	rs1804994	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	GLTSCR2-514	NM_015710	exon9	c.A1166G	p.Q389R	GGCGGCAGAGGCG	.	6	6	0	0	A|0.308;G|0.692	69	0	69	0	0
VN1R2	317701	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53762590	53762590	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	VN1R2-90	NM_173856	exon1	c.T962G	p.V321G	CATTGGTGAGCAC	.	399	55	229	1	.	0	0	0	0	0
MYT1L	23040	broad.mit.edu	37	2	1946857	1946859	+	In_Frame_Del	DEL	CTC	CTC	-	rs148009982	by1000genomes;alternate_allele	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	MYT1L-95	NM_015025	exon9	c.400_402del	p.134_134del	CTCGATCTCCTCC	.	223	8	129	0	.	0	0	0	0	0
ASAP2	8853	hgsc.bcm.edu	37	2	9533755	9533755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ASAP2-90	NM_003887	exon24	c.C2663T	p.P888L	GCCTCCCGCAGAA	.	33	16	0	0	.	10	6	4	0	0
TMEM214	54867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27257050	27257050	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TMEM214-115	NM_017727	exon2	c.G267A	p.K89K	GAACAAGAAGCAG	.	226	43	177	0	.	37	29	8	0	0
PLB1	151056	hgsc.bcm.edu;bcgsc.ca	37	2	28836923	28836923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PLB1-141	NM_153021	exon44	c.G3155T	p.R1052L	CCCCTCGGAATAG	.	65	4	50	0	.	1	1	0	0	0
TMEM247	388946	bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	.	NM_001145051	exon2	c.C382G	p.Q128E	CAGCGGCAGCGGC	.	500	39	159	2	G|1.000;|0.000	0	0	0	0	0
ASPRV1	151516	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	70188127	70188127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ASPRV1-69	NM_152792	exon1	c.G694A	p.D232N	CCAGATCGCCATC	.	256	32	176	1	.	1	0	1	0	0
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	84848429	84848429	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	DNAH6-69	NM_001370	exon25	c.T3907A	p.Y1303N	GCTGACTATCAGG	.	261	17	191	0	.	0	0	0	0	0
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	116447467	116447467	+	Silent	SNP	C	C	T	rs151071213	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	DPP10-142	NM_001178034	exon7	c.C558T	p.Y186Y	GCAGTACGCGGCC	.	71	15	53	0	C|0.999;T|0.001	20	12	8	0	0
LCT	3938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	136590717	136590717	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	LCT-101	NM_002299	exon2	c.G684C	p.E228D	CAGGAGCTCCGGG	.	46	7	41	0	.	0	0	0	0	0
CDCA7	83879	broad.mit.edu	37	2	174229648	174229648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CDCA7-91	NM_031942	exon6	c.G825A	p.M275I	ACCCATGGAGGAG	.	71	3	51	0	.	1	1	0	0	0
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu	37	2	225717140	225717141	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	DOCK10-92	NM_014689	exon18	c.2095_2096del	p.699_699del	TCAATGCACACAG	.	48	10	47	0	.	0	0	0	0	0
BPIFB6	128859	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	31626724	31626724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	.	NM_174897	exon9	c.C856A	p.L286M	GGTGAGCTGCCCC	.	151	12	108	0	.	0	0	0	0	0
ELMO2	63916	bcgsc.ca	37	20	45014770	45014770	+	Missense_Mutation	SNP	G	G	A	rs112131818	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ELMO2-91	NM_182764	exon8	c.C670T	p.L224F	CCTGGAGGTGTGA	.	54	4	52	0	G|0.999;A|0.001	0	0	0	0	0
PREX1	57580	ucsc.edu;bcgsc.ca	37	20	47262549	47262549	+	Missense_Mutation	SNP	C	C	T	rs6012504	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PREX1-231	NM_020820	exon26	c.G3352A	p.A1118T	AGGATGCGTCGCA	.	134	33	83	0	C|0.843;T|0.157	4	2	2	0	0
PCK1	5105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	56136550	56136550	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PCK1-227	NM_002591	exon2	c.G83C	p.R28T	CAGTGAGGGAGTT	.	71	14	71	0	.	1	1	0	0	0
CDH4	1002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	59829909	59829909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CDH4-282	NM_001794	exon2	c.G85A	p.E29K	ACTAGAGAGACCT	.	81	17	102	0	.	2	2	0	0	0
TNFRSF6B	8771	ucsc.edu;bcgsc.ca	37	20	62328453	62328453	+	Silent	SNP	T	T	C	rs2258056	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TNFRSF6B-651	NM_003823	exon1	c.T333C	p.R111R	CAACCGTGCCTGC	.	177	118	15	0	T|0.777;C|0.223	29	10	19	0	0
C21orf62	56245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	34166441	34166441	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	C21orf62-91	NM_001162495	exon4	c.C292G	p.L98V	GGACCAGCGTGAA	.	134	47	154	0	.	0	0	0	0	0
ZBTB21	49854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43412530	43412530	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	.	NM_001098402	exon3	c.G1675C	p.A559P	GACCTGCTGTTGA	.	132	39	86	0	.	0	0	0	0	0
MN1	4330	hgsc.bcm.edu	37	22	28194933	28194933	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	MN1-993	NM_002430	exon1	c.A1599G	p.Q533Q	CTGCTGTTGCTGC	.	67	6	5	0	.	5563	71	5491	1	0
NEFH	4744	ucsc.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NEFH-90	NM_021076	exon4	c.A1965T	p.P655P	GTCCCCAGAGAAG	.	146	22	226	1	A|0.500;T|0.500	20	20	0	0	0
NEFH	4744	bcgsc.ca	37	22	29885670	29885693	+	In_Frame_Del	DEL	AAGTCCCCAGTGAAGGCAGAAGCA	AAGTCCCCAGTGAAGGCAGAAGCA	-	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	AAGTCCCCAGTGAAGGCAGAAGCA	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NEFH-90	NM_021076	exon4	c.2041_2064del	p.681_688del	AAGGCCAAGTCCC	.	403	45	410	0	.	0	0	0	0	0
NEFH	4744	bcgsc.ca	37	22	29885722	29885722	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NEFH-90	NM_021076	exon4	c.T2093A	p.V698E	CCCCAGTGAAGGA	.	372	44	417	7	.	111	111	0	0	0
NEFH	4744	bcgsc.ca	37	22	29885732	29885732	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NEFH-90	NM_021076	exon4	c.A2103G	p.E701E	GGAAGAAGCAAAG	.	355	36	410	6	.	56	56	0	0	0
NEFH	4744	bcgsc.ca	37	22	29885735	29885735	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NEFH-90	NM_021076	exon4	c.A2106C	p.A702A	AGAAGCAAAGTCC	.	352	38	410	10	.	50	50	0	0	0
NF2	4771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30057313	30057313	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NF2-4696	NM_016418	exon8	c.G795A	p.S265S	CATCTCGTACAGT	.	62	8	56	0	.	18	8	10	0	0
SH3BP1	23616	hgsc.bcm.edu	37	22	38051355	38051355	+	Silent	SNP	G	G	A	rs762989		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SH3BP1-90	NM_018957	exon18	c.G1770A	p.P590P	AGCCCCGCCCTTG	.	7	5	1	0	G|0.825;A|0.175	1	1	0	0	0
SOX10	6663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38374133	38374133	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SOX10-650	NM_006941	exon3	c.C438T	p.N146N	ACTTTCGTTCAGC	.	46	5	45	0	.	0	0	0	0	0
CCR3	1232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46306920	46306920	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CCR3-660	NM_178328	exon3	c.A334C	p.I112L	TTCTGGATCCACT	.	287	109	336	0	.	0	0	0	0	0
ALS2CL	259173	bcgsc.ca	37	3	46729757	46729757	+	Missense_Mutation	SNP	C	C	G	rs7642448	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ALS2CL-155	NM_001190707	exon3	c.G133C	p.E45Q	GGCACTCTCTGCC	.	85	5	108	0	C|0.587;G|0.413	0	0	0	0	0
SLC25A26	115286	bcgsc.ca	37	3	66419942	66419942	+	Silent	SNP	A	A	G	rs1129179	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SLC25A26-46	NM_173471	exon9	c.A609G	p.A203A	CGTGGCAAAGACA	.	167	7	155	0	A|0.869;G|0.131;T|0.000	19	19	0	0	0
SLC25A26	115286	bcgsc.ca	37	3	66419956	66419956	+	Missense_Mutation	SNP	C	C	T	rs13874	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SLC25A26-46	NM_173471	exon9	c.C623T	p.T208M	GAATTACGCTGGC	.	174	9	163	0	C|0.342;T|0.658	0	0	0	0	0
STX19	415117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	93733581	93733581	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	STX19-90	NM_001001850	exon2	c.C533G	p.S178C	TCTTCAGACATCT	.	50	25	71	0	.	0	0	0	0	0
SEC22A	26984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	122990434	122990434	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SEC22A-91	NM_012430	exon7	c.C789G	p.I263M	CTTAATCTGTCTA	.	45	9	47	0	.	14	14	0	0	0
GHSR	2693	hgsc.bcm.edu	37	3	172166144	172166144	+	Silent	SNP	G	G	A	rs2232165	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	GHSR-501	NM_198407	exon1	c.C60T	p.D20D	ATCCCAGTCCAGG	.	14	12	1	0	G|0.960;A|0.040	0	0	0	0	0
HTR3D	200909	broad.mit.edu	37	3	183753777	183753777	+	Missense_Mutation	SNP	G	G	A	rs36092077	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	HTR3D-90	NM_001163646	exon3	c.G269A	p.R90Q	ATGCCCGGCCTTG	.	93	3	94	0	G|0.763;A|0.237	0	0	0	0	0
IDUA	3425	broad.mit.edu	37	4	996204	996204	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	IDUA-91	NM_000203	exon8	c.A1120C	p.T374P	AACAACACCCGCC	.	272	74	55	6	.	3	1	2	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	110	10	4	0	C|0.960;G|0.040	41	15	26	0	0
FAM184B	27146	hgsc.bcm.edu	37	4	17643848	17643848	+	Missense_Mutation	SNP	G	G	A	rs2286771	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	FAM184B-23	NM_015688	exon13	c.C2350T	p.R784W	CGCCCCGCTCCTG	.	5	5	0	0	G|0.440;A|0.560	0	0	0	0	0
NSUN7	79730	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	40810424	40810426	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NSUN7-90	NM_024677	exon12	c.1625_1627del	p.542_543del	AACGGGAGAAGAA	.	120	25	150	0	.	0	0	0	0	0
EPHA5	2044	bcgsc.ca	37	4	66197804	66197804	+	Silent	SNP	C	C	T	rs7349683	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	EPHA5-1430	NM_004439	exon17	c.G2895A	p.G965G	GTAGGCCCCAGAT	.	46	4	44	0	C|0.704;T|0.296	0	0	0	0	0
ART3	419	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	77033649	77033649	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ART3-92	NM_001130016	exon12	c.A1147G	p.I383V	TCTGCTATAAATC	.	44	4	39	0	.	0	0	0	0	0
COQ2	27235	bcgsc.ca	37	4	84191031	84191031	+	Silent	SNP	A	A	G	rs6535454	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	COQ2-92	NM_015697	exon5	c.T894C	p.D298D	AATAGTATCATAT	.	115	7	145	1	A|0.215;G|0.785	32	32	0	0	0
ENPEP	2028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	111409785	111409785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ENPEP-157	NM_001977	exon2	c.A733G	p.I245V	TATACAATATCTA	.	74	15	52	0	.	5	5	0	0	0
TDO2	6999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	156830150	156830150	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TDO2-514	NM_005651	exon5	c.G415C	p.D139H	GCCTTGGACTTCA	.	58	23	39	0	.	1	0	1	0	0
FRG1	2483	bcgsc.ca	37	4	190878626	190878626	+	Missense_Mutation	SNP	G	G	A	rs71229055		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	FRG1-90	NM_004477	exon6	c.G506A	p.S169N	CAAAAAGTAAAAC	.	1070	24	671	12	G|0.500;A|0.500	193	191	1	0	1
IRX4	50805	hgsc.bcm.edu	37	5	1882129	1882129	+	Silent	SNP	T	T	G	rs2232374	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	IRX4-226	NM_016358	exon2	c.A90C	p.G30G	GCGGCCTCCGGAC	.	8	8	0	0	T|0.735;G|0.265	0	0	0	0	0
MROH2B	133558	bcgsc.ca	37	5	41061715	41061715	+	Nonsense_Mutation	SNP	C	C	T	rs1023840	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	.	NM_173489	exon6	c.G572A	p.W191X	ATATACCAGAACA	.	102	5	89	1	C|0.822;T|0.178	0	0	0	0	0
PDE4D	5144	ucsc.edu	37	5	58284356	58284356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PDE4D-226	NM_001104631	exon11	c.C1516A	p.H506N	CAGGATGATCTAC	.	51	4	32	0	.	0	0	0	0	0
PDLIM4	8572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131607853	131607853	+	Silent	SNP	G	G	A	rs1140552	bycluster	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PDLIM4-91	NM_003687	exon7	c.G924A	p.A308A	CAAGGCGCGCGTG	.	206	55	116	0	G|1.000;A|0.000	0	0	0	0	0
RAD50	10111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	131940646	131940647	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	RAD50-229	NM_005732	exon16	c.2673_2674del	p.891_892del	GCAGACTGTGGAA	.	169	41	175	0	.	0	0	0	0	0
PCDHB4	56131	ucsc.edu	37	5	140503237	140503237	+	Missense_Mutation	SNP	A	A	G	rs78271884		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PCDHB4-93	NM_018938	exon1	c.A1657G	p.T553A	CTGGACACCAACG	.	232	131	13	0	G|1.000;|0.000	118	4	114	0	0
RBM27	54439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	145631438	145631438	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	RBM27-70	NM_018989	exon9	c.G1444C	p.D482H	GTTCCAGGTAAGC	.	98	28	66	0	.	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PPP1R3G-136	NM_001145115	exon1	c.A351G	p.A117A	GGACGCACAGCTC	.	8	8	0	0	A|0.006;G|0.994	10	0	10	0	0
F13A1	2162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	6175004	6175004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	F13A1-519	NM_000129	exon12	c.T1556C	p.V519A	ATGTCAACGTTGG	.	309	83	271	0	.	0	0	0	0	0
TMEM14B	81853	ucsc.edu	37	6	10756728	10756728	+	Missense_Mutation	SNP	C	C	T	rs72821581	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TMEM14B-90	NM_030969	exon6	c.C322T	p.R108C	GGAGTTCGTATGT	.	163	26	126	4	C|0.960;T|0.040	78	78	0	0	0
HLA-A	3105	hgsc.bcm.edu	37	6	29910566	29910566	+	Missense_Mutation	SNP	G	G	A	rs41545116	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	HLA-A-92	NM_001242758	exon2	c.G106A	p.V36M	ACATCCGTGTCCC	.	208	17	22	0	A|0.077;G|0.923	2	1	0	1	0
RNF39	80352	hgsc.bcm.edu	37	6	30039364	30039364	+	Missense_Mutation	SNP	C	C	A	rs11753382		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	RNF39-226	NM_025236	exon4	c.G787T	p.G263C	TGGGGCCGTCAGG	.	8	6	2	0	C|0.862;A|0.138	3	3	0	0	0
TNXB	7148	broad.mit.edu	37	6	32063513	32063514	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TNXB-90	NM_019105	exon3	c.2116_2117del	p.706_706del	CCCTCTACACACA	.	447	10	220	0	.	0	0	0	0	0
NOTCH4	4855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32166275	32166275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NOTCH4-1321	NM_004557	exon26	c.C4679T	p.A1560V	GGGAGCGCCCCAC	.	79	27	65	0	.	2	2	0	0	0
HLA-DRB1	3123	bcgsc.ca	37	6	32557461	32557461	+	Missense_Mutation	SNP	A	A	G	rs35053532	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	HLA-DRB1-1	NM_002124	exon1	c.T59C	p.M20T	AGCACCATCAGTG	.	468	25	340	10	A|0.986;G|0.013	43	43	0	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	7	6	0	0	C|0.673;A|0.327	5	1	4	0	0
FBXO9	26268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	52960318	52960318	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	FBXO9-227	NM_012347	exon11	c.T1091G	p.L364R	AACCACTTGACTA	.	56	7	50	0	.	0	0	0	0	0
MLIP	90523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	54095603	54095603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	MLIP-99	NM_138569	exon11	c.C1205T	p.T402I	CACAGACCCTCTC	.	133	31	104	0	.	7	4	3	0	0
FAM46A	55603	broad.mit.edu	37	6	82461728	82461742	+	In_Frame_Del	DEL	CCGCCGAAGTCGCCG	CCGCCGAAGTCGCCG	-	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	FAM46A-90	NM_017633	exon2	c.117_131del	p.39_44del	CCGCCACCGCCGA	.	109	9	19	0	.	0	0	0	0	0
IBTK	25998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	82921272	82921272	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	IBTK-92	NM_015525	exon14	c.T2309G	p.V770G	ATGGTCACGTCAC	.	299	67	340	0	.	14	8	6	0	0
FAM184A	79632	hgsc.bcm.edu;bcgsc.ca	37	6	119337933	119337933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	FAM184A-519	NM_024581	exon5	c.G1509T	p.R503S	CTTATCCCTAATT	.	76	4	66	0	.	2	2	0	0	0
SLC2A12	154091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	134373567	134373567	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SLC2A12-91	NM_145176	exon1	c.A52T	p.T18S	CGGCTGTCCCCTT	.	52	16	42	0	.	0	0	0	0	0
HGC6.3	0	bcgsc.ca	37	6	168376977	168376977	+	Missense_Mutation	SNP	G	G	A	rs113501624		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	.	NM_001129895	exon1	c.C356T	p.S119F	GAGGAGGAGGCAG	.	216	14	149	2	G|0.500;A|0.500	0	0	0	0	0
ZFAND2A	90637	bcgsc.ca	37	7	1195215	1195215	+	Silent	SNP	A	A	C	rs1133116	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ZFAND2A-69	NM_182491	exon4	c.T156G	p.V52V	GACGTGAACATCC	.	101	6	78	0	A|0.857;C|0.143	1	1	0	0	0
ETV1	2115	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	13971355	13971355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ETV1-659	NM_004956	exon9	c.G574A	p.E192K	AGGGTTCAGAAAG	.	267	18	250	0	.	5	5	0	0	0
AMPH	273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	38466556	38466556	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	AMPH-95	NM_139316	exon15	c.C1213G	p.Q405E	TTACCTGTGTGAA	.	118	20	144	0	.	0	0	0	0	0
GLI3	2737	bcgsc.ca	37	7	42079765	42079765	+	Silent	SNP	G	G	C	rs35961850	byfrequency;alternate_allele	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	GLI3-1149	NM_000168	exon7	c.C900G	p.S300S	ATGATCGGAGAGT	.	280	10	247	0	G|0.931;A|0.069	1	1	0	0	0
ZMIZ2	83637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44800087	44800087	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ZMIZ2-137	NM_031449	exon9	c.A1135T	p.T379S	CCCATGACCCCAA	.	320	45	247	0	.	9	9	0	0	0
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	88964602	88964602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ZNF804B-101	NM_181646	exon4	c.T2306C	p.I769T	ATGATATAACAAA	.	220	68	202	0	.	0	0	0	0	0
WNT16	51384	bcgsc.ca	37	7	120979089	120979089	+	Missense_Mutation	SNP	C	C	T	rs2707466	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	WNT16-1011	NM_057168	exon4	c.C788T	p.T263I	ACAAAACAAAGAG	.	72	6	95	1	C|0.462;T|0.538	1	1	0	0	0
WDR91	29062	bcgsc.ca	37	7	134871775	134871775	+	Silent	SNP	C	C	T	rs292557	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	WDR91-137	NM_014149	exon14	c.G2028A	p.S676S	TCCCTCCGAGTCA	.	131	5	135	0	C|0.315;N|0.000	4	4	0	0	0
DERL1	79139	bcgsc.ca	37	8	124031541	124031541	+	Missense_Mutation	SNP	T	T	C	rs2272722	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	DERL1-226	NM_024295	exon7	c.A511G	p.I171V	CATTGATTACCCT	.	52	4	62	0	T|0.926;C|0.074	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	11	9	0	0	A|0.118;G|0.882	4	0	4	0	0
MROH6	642475	hgsc.bcm.edu	37	8	144649625	144649625	+	Silent	SNP	T	T	C	rs10097556		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	.	NM_001100878	exon14	c.A1944G	p.R648R	CTGCAGTCGCCCT	.	11	11	0	0	T|0.058;C|0.942	2	0	2	0	0
TSTA3	7264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144695922	144695922	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TSTA3-91	NM_003313	exon8	c.C729T	p.S243S	CCCACCGGAGAGG	.	223	49	128	0	.	1	0	1	0	0
TONSL	4796	hgsc.bcm.edu	37	8	145661675	145661675	+	Missense_Mutation	SNP	G	G	A	rs7830832	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TONSL-92	NM_013432	exon17	c.C2141T	p.A714V	ACATGGGCCTGAG	.	7	6	0	0	G|0.593;A|0.407	6	4	2	0	0
TUSC1	286319	hgsc.bcm.edu	37	9	25678122	25678122	+	Silent	SNP	G	G	C	rs72631814	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TUSC1-90	NM_001004125	exon1	c.C198G	p.A66A	CAGGTCGGCAAAC	.	13	12	0	0	G|0.807;C|0.193	1	0	1	0	0
DDX58	23586	bcgsc.ca	37	9	32487537	32487537	+	Missense_Mutation	SNP	G	G	T	rs139635230	alternate_allele	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	DDX58-230	NM_014314	exon9	c.C1307A	p.A436E	ACTGACGCATCAA	.	128	5	178	0	G|1.000;A|0.000	1	1	0	0	0
BAG1	573	hgsc.bcm.edu	37	9	33264540	33264540	+	Missense_Mutation	SNP	C	C	G	rs1071545		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	BAG1-228	NM_004323	exon1	c.G133C	p.G45R	GACGCCCAGAGGG	.	4	4	0	0	C|0.976;G|0.024	20	0	20	0	0
OR2S2	56656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35958062	35958062	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	OR2S2-68	NM_019897	exon1	c.G34C	p.G12R	CGAACCCCATCAC	.	104	13	102	0	.	0	0	0	0	0
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	88954993	88954994	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	AA	AA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ZCCHC6-92	NM_024617	exon8	c.1165_1166del	p.389_389del	GCATGGAAGTCTG	.	53	17	64	0	.	0	0	0	0	0
WDR34	89891	hgsc.bcm.edu	37	9	131418828	131418828	+	Missense_Mutation	SNP	A	A	C	rs4837292		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	WDR34-92	NM_052844	exon1	c.T178G	p.W60G	TCTCCCAGCGGAT	.	6	6	0	0	A|0.006;C|0.994	0	0	0	0	0
SURF2	6835	hgsc.bcm.edu	37	9	136223541	136223541	+	Missense_Mutation	SNP	C	C	T	rs143037947		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	SURF2-226	NM_017503	exon1	c.C73T	p.R25C	GACGCCCGCAAGG	.	15	7	1	0	C|0.971;T|0.029	0	0	0	0	0
DBH	1621	hgsc.bcm.edu;bcgsc.ca	37	9	136501584	136501584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	DBH-516	NM_000787	exon1	c.G91T	p.V31F	TTCCTGGTCATCC	.	100	5	36	0	.	0	0	0	0	0
ENTPD2	954	hgsc.bcm.edu	37	9	139943400	139943400	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ENTPD2-90	NM_203468	exon8	c.A1277T	p.Q426L	TTCTTCTGGAAGA	.	21	21	6	0	.	0	0	0	0	0
RBM3	5935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48433575	48433575	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	RBM3-131	NM_006743	exon2	c.T7A	p.S3T	ATGTCCTCTGAAG	.	43	19	42	0	.	103	30	73	0	0
RRAGB	10325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	55758011	55758011	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	RRAGB-130	NM_016656	exon6	c.C592G	p.R198G	GATCAACGGGACC	.	29	9	52	0	.	5	4	1	0	0
P2RY4	5030	bcgsc.ca	37	X	69478421	69478421	+	Missense_Mutation	SNP	G	G	T	rs72628860	byfrequency	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	P2RY4-540	NM_002565	exon1	c.C1054A	p.P352T	CCTGGGGGGTGGC	.	155	10	179	2	G|0.960;T|0.040	0	0	0	0	0
CDX4	1046	broad.mit.edu;bcgsc.ca	37	X	72674262	72674262	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	CDX4-130	NM_005193	exon3	c.C696G	p.I232M	GATGATCAAAAAG	.	72	4	98	1	.	0	0	0	0	0
ECE1	1889	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	21599251	21599252	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	ECE1-93	NM_001397	exon4	c.434_435insAC	p.R145fs	CCCCAGCGTGAGT	.	319	87	217	0	.	0	0	0	0	0
PCBP2	5094	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	53856277	53856278	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	PCBP2-226	NM_005016	exon8	c.517_518insC	p.S173fs	TCCCAGTCCCCCC	.	84	18	81	0	.	0	0	0	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7574011	7574012	+	Frame_Shift_Ins	INS	-	-	CGAAG	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	TP53-70225	NM_001126112	exon10	c.1016_1017insCTTCG	p.E339fs	AACATCTCGAAGC	.	118	25	176	0	.	0	0	0	0	0
KRTAP4-5	85289	broad.mit.edu	37	17	39305775	39305776	+	In_Frame_Ins	INS	-	-	GGCAGCAGCTGGGGC	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	KRTAP4-5-90	NM_033188	exon1	c.245_246insGCCCCAGCTGCTGCC	p.Q82delinsRPSCCQ	GTGGTCTGGCAGC	.	94	66	11	0	.	0	0	0	0	0
LPHN1	22859	broad.mit.edu	37	19	14272186	14272187	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	LPHN1-523	NM_001008701	exon7	c.1463_1464insG	p.V488fs	CACTGGACCCGCC	.	139	7	20	0	.	0	0	0	0	0
C21orf58	54058	broad.mit.edu	37	21	47721985	47721986	+	In_Frame_Ins	INS	-	-	TGG	rs71318063	bycluster;by1000genomes	TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	C21orf58-91	NM_058180	exon8	c.897_898insCCA	p.H299delinsHH	CACAGCATGGTGG	.	93	15	8	0	-|0.500;TGG|0.500	0	0	0	0	0
FUBP3	8939	bcgsc.ca	37	9	133501801	133501802	+	Frame_Shift_Ins	INS	-	-	CGTGGCGACTGGAG	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	FUBP3-69	NM_003934	exon12	c.1026_1027insCGTGGCGACTGGAG	p.G342fs	TCGTGGCCGTGGC	.	111	4	88	0	.	0	0	0	0	0
NEFH	4744	bcgsc.ca	37	22	29885644	29885645	+	Missense_Mutation	DNP	CA	CA	AG	novel		TCGA-OR-A5JP-01A-11D-A29I-10	TCGA-OR-A5JP-10A-01D-A29L-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	427accf5-7c11-44b2-9f7f-3731decb1c0f	8376e154-d763-4a55-8294-07af51b920ca	.	NEFH-90	NM_021076	exon4	c.A2016G	p.A672E	GAAGGCAGAAGCA	.	340	0	358	0	.	0	0	0	0	0