Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PRAMEF1	65121	ucsc.edu	37	1	12854162	12854162	+	Missense_Mutation	SNP	C	C	T	rs199893374		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	PRAMEF1-22	NM_023013	exon3	c.C386T	p.T129M	AGACCACGAGTAA	.	138	33	184	10	.	0	0	0	0	0
UBR4	23352	bcgsc.ca	37	1	19433449	19433449	+	Silent	SNP	A	A	G	rs6426677	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	UBR4-612	NM_020765	exon82	c.T12117C	p.V4039V	GGCCTCAACGGGG	.	257	8	335	4	A|0.311;G|0.689	0	0	0	0	0
ZMPSTE24	10269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40758252	40758252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	ZMPSTE24-226	NM_005857	exon10	c.G1339A	p.V447I	TTCCCTGTTTCTG	.	70	52	90	0	.	25	0	25	0	0
BEST4	266675	hgsc.bcm.edu	37	1	45252159	45252159	+	Missense_Mutation	SNP	T	T	C	rs41306591		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	BEST4-91	NM_153274	exon3	c.A457G	p.T153A	CCATGGTGGGGAA	.	15	12	0	0	T|0.997;C|0.003	0	0	0	0	0
CTBS	1486	broad.mit.edu	37	1	85039999	85040007	+	In_Frame_Del	DEL	GCAGCGCCA	GCAGCGCCA	-	rs142534762	bycluster;by1000genomes;alternate_allele	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	CTBS-90	NM_004388	exon1	c.92_100del	p.31_34del	CGAGCCGCAGCGC	.	37	14	8	0	.	0	0	0	0	0
ATP1A1OS	84852	broad.mit.edu	37	1	116948712	116948712	+	RNA	SNP	G	G	A	rs850610	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	.	.	.	.	.	ACTTTCGGCATCC	.	65	4	100	0	A|0.382;C|0.006;G|0.610;T|0.002	1	1	0	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120612006	120612006	+	Silent	SNP	G	G	A	rs77243975	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	NOTCH2-1441	NM_024408	exon1	c.C15T	p.R5R	AGCGGGGCGCAGG	.	10	9	0	0	G|0.500;A|0.500	4	0	4	0	0
CGN	57530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151503099	151503099	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	CGN-93	NM_020770	exon13	c.G2448A	p.Q816Q	GGAGCAGCAGACA	.	74	56	38	0	.	4	1	3	0	0
GATAD2B	57459	bcgsc.ca	37	1	153788863	153788863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	GATAD2B-90	NM_020699	exon7	c.C1102A	p.P368T	GGGGTGGGATCTC	.	83	5	134	0	.	2	2	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	7	5	2	0	T|0.229;C|0.771	1	0	1	0	0
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186031090	186031090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	HMCN1-113	NM_031935	exon47	c.G7420A	p.V2474I	CTTTCAGTATTAG	.	29	26	37	0	.	0	0	0	0	0
KCTD3	51133	hgsc.bcm.edu	37	1	215741053	215741053	+	Missense_Mutation	SNP	T	T	G	rs2275768	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	KCTD3-93	NM_016121	exon1	c.T25G	p.F9V	GGCAGCTTCCCCG	.	9	9	0	0	T|0.721;G|0.279	6	0	6	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	17	16	0	0	C|0.643;T|0.357	0	0	0	0	0
OR2T27	403239	bcgsc.ca	37	1	248813723	248813723	+	Missense_Mutation	SNP	C	C	T	rs71642467		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	OR2T27-47	NM_001001824	exon1	c.G463A	p.D155N	AACCATCGATAGA	.	147	7	308	1	C|0.500;T|0.500	0	0	0	0	0
UPF2	26019	ucsc.edu;bcgsc.ca	37	10	11997479	11997479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	UPF2-515	NM_080599	exon14	c.C2602A	p.R868S	TGATGCGCCTCTG	.	32	4	34	0	.	2	2	0	0	0
DLG5	9231	bcgsc.ca	37	10	79566632	79566632	+	Silent	SNP	G	G	A	rs1058198	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	DLG5-98	NM_004747	exon26	c.C4851T	p.D1617D	GATGTCGTCCTTC	.	138	5	188	2	G|0.688;A|0.312	4	4	0	0	0
CPEB3	22849	bcgsc.ca	37	10	93999850	93999850	+	Silent	SNP	A	A	G	rs3824734	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	CPEB3-90	NM_014912	exon2	c.T258C	p.P86P	CTGAGGAGGCTGA	.	32	32	11	0	A|0.306;G|0.694	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135000148	135000148	+	Silent	SNP	T	T	C	rs3810965	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	KNDC1-229	NM_152643	exon6	c.T1296C	p.A432A	AGGAGCTAGGCAG	.	4	4	0	0	T|0.607;C|0.393	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135000159	135000159	+	Missense_Mutation	SNP	A	A	G	rs3810964	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	KNDC1-229	NM_152643	exon6	c.A1307G	p.E436G	AGCTGGAAAGTGC	.	4	4	0	0	A|0.608;G|0.392	0	0	0	0	0
MUC2	4583	bcgsc.ca	37	11	1092884	1092884	+	Missense_Mutation	SNP	C	C	T	rs201415503		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	MUC2-90	NM_002457	exon30	c.C4703T	p.T1568M	CCACCACGGTGAC	.	197	11	220	5	.	0	0	0	0	0
DNHD1	144132	bcgsc.ca	37	11	6588228	6588228	+	Missense_Mutation	SNP	G	G	A	rs10769699	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	DNHD1-24	NM_144666	exon36	c.G11489A	p.R3830H	AGCTGCGTGCTCA	.	182	6	271	0	G|0.727;A|0.273	0	0	0	0	0
MACROD1	28992	bcgsc.ca	37	11	63767186	63767186	+	Silent	SNP	A	A	G	rs709594	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	MACROD1-68	NM_014067	exon6	c.T714C	p.S238S	AGCCTGACTGGCG	.	30	27	10	0	A|0.618;G|0.382	20	0	20	0	0
SLC22A12	116085	ucsc.edu;bcgsc.ca	37	11	64367862	64367862	+	Silent	SNP	T	T	C	rs7932775	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	SLC22A12-91	NM_144585	exon8	c.T1309C	p.L437L	TCAGCCTTGGCCG	.	16	4	16	0	T|0.629;C|0.371	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	6	6	0	0	G|0.005;C|0.995	60	0	60	0	0
P2RY2	5029	hgsc.bcm.edu	37	11	72945732	72945732	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	P2RY2-503	NM_176071	exon3	c.G528A	p.A176A	CAGCGCGCGCGGG	.	17	16	3	0	.	5	0	5	0	0
PGR	5241	hgsc.bcm.edu	37	11	100998531	100998531	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	PGR-652	NM_000926	exon1	c.C1271G	p.P424R	GGCAGCGGGGGCG	.	9	6	0	0	.	0	0	0	0	0
PRB4	5545	ucsc.edu;bcgsc.ca	37	12	11461745	11461745	+	Missense_Mutation	SNP	G	G	C	rs76859544		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	PRB4-91	NM_001261399	exon3	c.C172G	p.Q58E	GTCCTTGTGGCTT	.	60	14	43	1	C|1.000;|0.000	2	2	0	0	0
REP15	387849	bcgsc.ca	37	12	27849795	27849795	+	Silent	SNP	C	C	T	rs929948	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	REP15-91	NM_001029874	exon1	c.C300T	p.S100S	GGGATCCAACAAG	.	113	5	83	0	C|0.409;T|0.591	0	0	0	0	0
ESPL1	9700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53663137	53663137	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	ESPL1-228	NM_012291	exon3	c.C411T	p.P137P	TGCTCCCCAGGAC	.	63	29	51	0	.	0	0	0	0	0
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	82147977	82147977	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	PPFIA2-231	NM_001220476	exon2	c.G24A	p.T8T	ATTAATCGTGGGC	.	186	74	117	0	.	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	5	5	0	0	A|0.273;G|0.727	1	0	1	0	0
TUBA3C	7278	bcgsc.ca	37	13	19751274	19751274	+	Silent	SNP	G	G	A	rs143115179	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	TUBA3C-95	NM_006001	exon4	c.C849T	p.H283H	CTGCTCGTGGTAG	.	242	24	360	9	G|0.994;A|0.006	0	0	0	0	0
TUBA3C	7278	bcgsc.ca	37	13	19751292	19751292	+	Silent	SNP	T	T	C	rs147482964	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	TUBA3C-95	NM_006001	exon4	c.A831G	p.S277S	CTCGGCTGAGATG	.	236	22	364	11	T|0.997;C|0.003	0	0	0	0	0
SPERT	220082	hgsc.bcm.edu	37	13	46288017	46288017	+	Nonsense_Mutation	SNP	C	C	A	rs79707842		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	SPERT-91	NM_152719	exon3	c.C857A	p.S286X	CCCCCTCACCCCA	.	18	18	0	0	C|0.925;A|0.075	0	0	0	0	0
RBM23	55147	ucsc.edu	37	14	23371268	23371268	+	Silent	SNP	A	A	G	rs56708790	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	RBM23-91	NM_001077351	exon12	c.T1167C	p.A389A	GGCGGCAGCAGCA	.	54	6	49	0	A|0.887;G|0.113	20	8	12	0	0
AKAP6	9472	bcgsc.ca	37	14	33046388	33046388	+	Silent	SNP	A	A	G	rs1950703	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	AKAP6-733	NM_004274	exon5	c.A2409G	p.E803E	TACAGAAAATTGG	.	199	7	154	0	A|0.133;G|0.867	0	0	0	0	0
PLEKHD1	400224	broad.mit.edu	37	14	69995112	69995112	+	Silent	SNP	G	G	A	rs55727771	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	PLEKHD1-68	NM_001161498	exon13	c.G1497A	p.S499S	CCCCTCGGCACTC	.	79	5	69	1	G|0.894;A|0.106	1	1	0	0	0
ASPG	374569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	104573592	104573592	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	.	NM_001080464	exon12	c.A1343C	p.E448A	ACACAGAGGCAGT	.	598	37	220	0	.	0	0	0	0	0
MAP1A	4130	bcgsc.ca	37	15	43815999	43815999	+	Silent	SNP	C	C	T	rs3862138	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	MAP1A-141	NM_002373	exon4	c.C2328T	p.P776P	CCTGCCCGGGCCT	.	69	5	86	0	C|0.836;T|0.164	0	0	0	0	0
DUOX2	50506	hgsc.bcm.edu	37	15	45403779	45403779	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	DUOX2-95	NM_014080	exon6	c.A518G	p.N173S	ACCTGGTTGGCCT	.	9	9	2	0	.	0	0	0	0	0
TLN2	83660	ucsc.edu;bcgsc.ca	37	15	63017183	63017183	+	Missense_Mutation	SNP	A	A	C	rs148931336	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	TLN2-573	NM_015059	exon24	c.A3135C	p.E1045D	CCATGAAGCTTGT	.	33	4	47	0	A|0.988;C|0.012	0	0	0	0	0
ACSBG1	23205	bcgsc.ca	37	15	78466127	78466127	+	Missense_Mutation	SNP	T	T	C	rs2304824	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	ACSBG1-91	NM_015162	exon13	c.A1897G	p.M633V	ACTCCATAGCTTG	.	77	6	135	1	T|0.468;C|0.532	0	0	0	0	0
C16orf11	146325	hgsc.bcm.edu	37	16	613729	613729	+	Silent	SNP	T	T	G	rs45619831	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	C16orf11-23	NM_145270	exon2	c.T435G	p.A145A	TGTGGCTAGGGCC	.	24	6	0	0	T|0.992;G|0.008	0	0	0	0	0
GRIN2A	2903	bcgsc.ca	37	16	9943666	9943666	+	Silent	SNP	C	C	T	rs8049651	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	GRIN2A-349	NM_000833	exon6	c.G1275A	p.L425L	CTCGGTCAGGGGG	.	323	10	280	3	C|0.736;T|0.264	0	0	0	0	0
ZZEF1	23140	hgsc.bcm.edu	37	17	4046101	4046101	+	Missense_Mutation	SNP	A	A	G	rs1454121		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	ZZEF1-93	NM_015113	exon1	c.T89C	p.V30A	CCCGAGACCGCGG	.	4	4	0	0	A|0.188;G|0.812	0	0	0	0	0
PELP1	27043	ucsc.edu;bcgsc.ca	37	17	4576216	4576216	+	Silent	SNP	G	G	A	rs147763003		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	PELP1-24	NM_014389	exon16	c.C2070T	p.P690P	TGCTGAGGGCATG	.	47	13	27	0	G|0.995;A|0.005	30	30	0	0	0
MINK1	50488	bcgsc.ca	37	17	4797305	4797305	+	Missense_Mutation	SNP	G	G	A	rs2302319	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	MINK1-943	NM_153827	exon22	c.G2587A	p.V863I	GACAGCGTCAGCA	.	108	5	138	0	G|0.828;A|0.172	42	42	0	0	0
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577114	7577114	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	TP53-70225	NM_000546	exon8	c.G824C	p.C275S	CAGGCACAAACAC	.	57	44	97	0	.	53	3	50	0	0
ELAC2	60528	bcgsc.ca	37	17	12898295	12898295	+	Silent	SNP	T	T	C	rs17552022	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	ELAC2-90	NM_018127	exon20	c.A1893G	p.T631T	ATCACATGTTCGC	.	138	6	243	0	T|0.921;C|0.079	84	84	0	0	0
TEKT3	64518	bcgsc.ca	37	17	15215660	15215660	+	Silent	SNP	T	T	C	rs2286516	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	TEKT3-92	NM_031898	exon7	c.A1017G	p.Q339Q	GTTGAATTGATTC	.	87	7	107	0	T|0.770;C|0.230	1	1	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	211	9	298	17	.	15	3	12	0	0
SMCR7	125170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18168068	18168068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	SMCR7-90	NM_148886	exon4	c.G1388T	p.G463V	CCGAGGGGCTGCT	.	45	43	35	0	.	13	0	13	0	0
KRTAP4-11	653240	bcgsc.ca	37	17	39274319	39274319	+	Missense_Mutation	SNP	G	G	C	rs199712484		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	.	NM_033059	exon1	c.C249G	p.S83R	GCAGCAGCTGGAC	.	143	21	45	0	.	0	0	0	0	0
KRTAP4-11	653240	ucsc.edu	37	17	39274364	39274364	+	Missense_Mutation	SNP	T	T	G	rs425784		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	.	NM_033059	exon1	c.A204C	p.R68S	GCAGCATCTGGGG	.	194	40	35	2	.	0	0	0	0	0
KRTAP4-11	653240	broad.mit.edu;bcgsc.ca	37	17	39274416	39274416	+	Missense_Mutation	SNP	C	C	T	rs408579	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	.	NM_033059	exon1	c.G152A	p.R51K	TGGGGCCTGCAGC	.	124	21	41	0	.	0	0	0	0	0
KLHL10	317719	broad.mit.edu	37	17	40004447	40004447	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	KLHL10-227	NM_152467	exon5	c.T1715A	p.V572E	GTGTAGTACCAGG	.	75	5	97	0	.	0	0	0	0	0
FAM20A	54757	hgsc.bcm.edu	37	17	66596769	66596769	+	Silent	SNP	C	C	T	rs2907388		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	FAM20A-90	NM_017565	exon1	c.G39A	p.L13L	CAGCAGCAGCAGA	.	15	13	0	0	C|0.943;T|0.057	0	0	0	0	0
LAMA3	3909	bcgsc.ca	37	18	21441717	21441717	+	Silent	SNP	C	C	T	rs12965685	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	LAMA3-100	NM_001127717	exon35	c.C4530T	p.P1510P	GCTGCCCGCAACC	.	99	5	122	2	C|0.578;T|0.422	0	0	0	0	0
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31323005	31323005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	ASXL3-49	NM_030632	exon12	c.C3193T	p.R1065W	CAAGCTCGGGCCC	.	25	21	27	0	.	0	0	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76753768	76753768	+	Missense_Mutation	SNP	C	C	G	rs2447437	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	SALL3-155	NM_171999	exon2	c.C1777G	p.L593V	CCGCCCCTCACTA	.	5	5	0	0	C|0.780;G|0.220	0	0	0	0	0
MADCAM1	8174	hgsc.bcm.edu	37	19	498751	498751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	MADCAM1-90	NM_130760	exon3	c.T593C	p.V198A	CCCCTGTCCCGCC	.	18	7	0	0	.	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	12	11	0	0	C|0.766;T|0.234	31	13	17	0	1
PGLS	25796	hgsc.bcm.edu	37	19	17622614	17622614	+	Silent	SNP	C	C	T	rs11086075	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	PGLS-90	NM_012088	exon1	c.C133T	p.L45L	CTCGGCCTGTCGG	.	7	7	0	0	C|0.617;T|0.383	74	1	73	0	0
CILP2	148113	hgsc.bcm.edu	37	19	19651140	19651140	+	Silent	SNP	A	A	G	rs4808970	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	CILP2-91	NM_153221	exon3	c.A291G	p.E97E	GCTGGAAGCGCGC	.	18	6	0	0	A|0.873;G|0.127	0	0	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704002	29704002	+	Silent	SNP	T	T	C	rs11666764	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	UQCRFS1-226	NM_006003	exon1	c.A24G	p.S8S	CGGGCCTGAGCGG	.	7	7	0	0	T|0.072;C|0.928	0	0	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C	rs8100724	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	UQCRFS1-226	NM_006003	exon1	c.T16G	p.S6A	AGCGGGATGCTAC	.	8	8	0	0	A|0.065;C|0.935	0	0	0	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	10	8	0	0	G|0.349;A|0.651	2	1	1	0	0
CGB7	94027	bcgsc.ca	37	19	49558216	49558216	+	Missense_Mutation	SNP	C	C	T	rs36106771	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	CGB7-90	NM_033142	exon2	c.G65A	p.R22K	ATCTCCCTGGATG	.	63	9	26	0	C|0.674;T|0.326	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	ASPDH-90	NM_001114598	exon6	c.A797G	p.Q266R	AGGCTCTGCCAGA	.	13	13	0	0	T|0.228;C|0.772	1	0	1	0	0
LENG9	94059	hgsc.bcm.edu	37	19	54974329	54974329	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	LENG9-68	NM_198988	exon1	c.447delC	p.F149fs	GCGGAAGAAGCGC	.	20	10	1	0	.	0	0	0	0	0
SBK2	646643	hgsc.bcm.edu	37	19	56041261	56041261	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	SBK2-68	NM_001101401	exon4	c.C886T	p.L296L	CGGCCAGGCCGAA	.	15	7	0	0	.	0	0	0	0	0
ZIM3	114026	broad.mit.edu;bcgsc.ca	37	19	57648259	57648259	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	ZIM3-92	NM_052882	exon4	c.C223T	p.L75L	TTCCCAGCACTTC	.	336	8	279	0	.	0	0	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	4	4	0	0	A|0.003;G|0.997	0	0	0	0	0
AGBL5	60509	broad.mit.edu;bcgsc.ca	37	2	27276815	27276815	+	Missense_Mutation	SNP	C	C	T	rs144135243		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	AGBL5-154	NM_021831	exon4	c.C439T	p.R147C	GAGGGCCGTGGGG	.	91	7	111	0	C|1.000;T|0.000	5	5	0	0	0
TTC27	55622	hgsc.bcm.edu;broad.mit.edu	37	2	33036125	33036125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	TTC27-90	NM_017735	exon17	c.G2033T	p.G678V	TTGATGGGATGAC	.	73	4	122	0	.	8	8	0	0	0
TMEM247	388946	hgsc.bcm.edu;bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	.	NM_001145051	exon2	c.C382G	p.Q128E	CAGCGGCAGCGGC	.	278	32	137	0	G|1.000;|0.000	0	0	0	0	0
BCL11A	53335	ucsc.edu;mdanderson.org	37	2	60688336	60688336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	BCL11A-1149	NM_018014	exon4	c.A1711G	p.K571E	CGCGCTTATGCTT	.	93	87	16	1	.	2	0	2	0	0
DYSF	8291	bcgsc.ca	37	2	71780215	71780215	+	Silent	SNP	T	T	C	rs2303596	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	DYSF-158	NM_001130982	exon21	c.T1923C	p.D641D	GGATGATGCCATC	.	333	10	450	1	T|0.328;C|0.672	0	0	0	0	0
DYSF	8291	broad.mit.edu	37	2	71892329	71892329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	DYSF-158	NM_001130987	exon47	c.T5212C	p.S1738P	CGCCCCTCCCAGC	.	85	10	120	11	.	6	4	2	0	0
MARCH7	64844	bcgsc.ca	37	2	160599717	160599717	+	Missense_Mutation	SNP	C	C	G	rs17813964	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	MARCH7-68	NM_022826	exon3	c.C299G	p.T100S	ACTGTACTACCTC	.	189	7	239	2	C|0.945;G|0.055	3	3	0	0	0
XIRP2	129446	bcgsc.ca	37	2	168103304	168103304	+	Missense_Mutation	SNP	G	G	A	rs16853309	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	XIRP2-104	NM_152381	exon9	c.G5402A	p.R1801H	TTGAACGTACTGT	.	146	7	223	2	G|0.820;A|0.180	0	0	0	0	0
FASTKD1	79675	bcgsc.ca	37	2	170403030	170403030	+	Missense_Mutation	SNP	T	T	C	rs2253680	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	FASTKD1-119	NM_024622	exon8	c.A1399G	p.M467V	AATACATGTGATC	.	158	6	161	1	T|0.444;C|0.556	2	2	0	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025366	207025366	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	EEF1B2-227	NM_021121	exon3	c.G135A	p.P45P	CCCACCGCCTGCC	.	98	3	150	1	.	569	569	0	0	0
KLHL30	377007	hgsc.bcm.edu	37	2	239050142	239050142	+	Silent	SNP	G	G	A	rs73102336		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	KLHL30-22	NM_198582	exon2	c.G747A	p.R249R	ATGCCGGGCAGCC	.	12	12	0	0	G|0.930;A|0.070	0	0	0	0	0
LOC643387	0	broad.mit.edu	37	2	239140728	239140728	+	RNA	SNP	A	A	G	rs11689033	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	.	.	.	.	.	CTGGAGAAATCCG	.	79	4	113	2	A|0.825;G|0.175	0	0	0	0	0
FERMT1	55612	bcgsc.ca	37	20	6096632	6096632	+	Silent	SNP	G	G	A	rs1056141	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	FERMT1-495	NM_017671	exon3	c.C211T	p.L71L	TTTTCAGAAGCCA	.	70	4	90	0	G|0.894;A|0.106	0	0	0	0	0
RRBP1	6238	hgsc.bcm.edu	37	20	17602360	17602360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	RRBP1-92	NM_004587	exon15	c.C2000A	p.P667Q	GCTGGCGGGTGCT	.	66	4	43	0	.	287	287	0	0	0
ERGIC3	51614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34129865	34129865	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	ERGIC3-585	NM_015966	exon1	c.C19T	p.L7L	GGGAAGCTGAAGC	.	137	55	38	0	.	181	103	78	0	0
DDX27	55661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47855847	47855847	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	DDX27-537	NM_017895	exon16	c.G1962C	p.Q654H	GTTCCAGACCAAA	.	17	7	21	0	.	60	60	0	0	0
RTDR1	27156	bcgsc.ca	37	22	23482460	23482460	+	Silent	SNP	A	A	G	rs4822360	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	RTDR1-516	NM_014433	exon2	c.T148C	p.L50L	CACACAAGGCCAT	.	120	5	108	0	A|0.436;G|0.564	12	12	0	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	NEFH-90	NM_021076	exon4	c.A1965T	p.P655P	GTCCCCAGAGAAG	.	394	54	353	0	A|0.500;T|0.500	21	21	0	0	0
NEFH	4744	broad.mit.edu	37	22	29885599	29885604	+	In_Frame_Del	DEL	AGGAAG	AGGAAG	-	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	NEFH-90	NM_021076	exon4	c.1970_1975del	p.657_659del	CAGAGAAGGAAGA	.	398	32	367	0	.	0	0	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	25	25	0	0	A|0.354;G|0.646	0	0	0	0	0
TTLL3	26140	bcgsc.ca	37	3	9867625	9867625	+	Silent	SNP	C	C	T	rs3732527	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	TTLL3-585	NM_001025930	exon8	c.C1296T	p.R432R	GTCCCGCGGACGA	.	354	9	503	3	C|0.418;T|0.582	0	0	0	0	0
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266137	41266137	+	Missense_Mutation	SNP	C	C	T	rs121913409	bycluster	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	CTNNB1-24361	NM_001098209	exon3	c.C134T	p.S45F	CTCCTTCTCTGAG	.	96	77	151	0	.	45	1	44	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	5	5	0	0	G|0.237;C|0.763	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	6	6	0	0	G|0.252;C|0.748	0	0	0	0	0
CRYBG3	131544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	97596823	97596823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	CRYBG3-68	NM_153605	exon4	c.C6785T	p.P2262L	AGGAACCAGTGTC	.	76	52	84	0	.	0	0	0	0	0
SEMA5B	54437	hgsc.bcm.edu	37	3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	rs2276782	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	SEMA5B-157	NM_001256347	exon18	c.T2681A	p.V894D	AGGAGGACCTCCA	.	7	7	0	0	T|0.412;A|0.588	0	0	0	0	0
TSC22D2	9819	hgsc.bcm.edu	37	3	150128392	150128392	+	Missense_Mutation	SNP	G	G	A	rs879634	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	TSC22D2-91	NM_014779	exon1	c.G1255A	p.A419T	CAGAATGCTTCCT	.	9	9	0	0	G|0.797;A|0.203	3	1	2	0	0
SPON2	10417	bcgsc.ca	37	4	1165748	1165748	+	Missense_Mutation	SNP	T	T	C	rs6836335	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	SPON2-90	NM_012445	exon2	c.A112G	p.R38G	GGGCTCTGGCGGA	.	324	9	72	0	T|0.847;C|0.153	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	169	52	1	0	C|0.960;G|0.040	110	35	75	0	0
CCDC96	257236	hgsc.bcm.edu	37	4	7044357	7044357	+	Silent	SNP	A	A	G	rs871133		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	CCDC96-90	NM_153376	exon1	c.T309C	p.V103V	AGCCCCAACCTCG	.	6	6	0	0	A|0.036;G|0.964	3	0	3	0	0
CCDC96	257236	hgsc.bcm.edu	37	4	7044380	7044380	+	Missense_Mutation	SNP	C	C	T	rs871134		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	CCDC96-90	NM_153376	exon1	c.G286A	p.E96K	CGGGCTCGGGCTG	.	6	5	1	0	C|0.472;T|0.528	2	1	1	0	0
FAM184B	27146	hgsc.bcm.edu	37	4	17643848	17643848	+	Missense_Mutation	SNP	G	G	A	rs2286771	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	FAM184B-23	NM_015688	exon13	c.C2350T	p.R784W	CGCCCCGCTCCTG	.	13	13	0	0	G|0.440;A|0.560	0	0	0	0	0
NMU	10874	hgsc.bcm.edu	37	4	56502307	56502307	+	Missense_Mutation	SNP	G	G	T	rs3828555	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	NMU-650	NM_006681	exon1	c.C53A	p.A18E	GACGCCGCGGCCA	.	20	13	0	0	G|0.853;T|0.147	1	0	1	0	0
ERAP1	51752	bcgsc.ca	37	5	96118852	96118852	+	Missense_Mutation	SNP	G	G	C	rs27044	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	ERAP1-70	NM_001198541	exon15	c.C2188G	p.Q730E	GTAGTTGACTCCG	.	177	6	145	1	G|0.312;C|0.688	6	6	0	0	0
PCDHB10	56126	broad.mit.edu	37	5	140574170	140574175	+	In_Frame_Del	DEL	AGGCCG	AGGCCG	-	rs58244182	bycluster;alternate_allele	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	PCDHB10-92	NM_018930	exon1	c.2045_2050del	p.682_684del	AGGCCCAGGCCGA	.	87	15	7	0	-|0.750;GGCCGA|0.250	0	0	0	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	11	11	0	0	G|0.585;C|0.415	0	0	0	0	0
TUBB	203068	broad.mit.edu	37	6	30691786	30691786	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	TUBB-91	NM_178014	exon4	c.T947A	p.V316D	CTGCTGTCTTCCG	.	80	5	104	1	.	477	474	0	3	0
DAXX	1616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33288323	33288323	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	DAXX-731	NM_001141970	exon4	c.G1121C	p.R374P	TTTTCCCGAAGGC	.	21	15	26	0	.	43	3	40	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	10	10	0	0	T|0.441;C|0.559	0	0	0	0	0
YIPF3	25844	bcgsc.ca	37	6	43481121	43481121	+	Silent	SNP	C	C	T	rs2231767	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	YIPF3-90	NM_015388	exon5	c.G510A	p.G170G	CTTCATCCCATGG	.	91	7	128	0	C|0.967;T|0.033	158	158	0	0	0
TMEM151B	441151	hgsc.bcm.edu	37	6	44243154	44243154	+	Silent	SNP	C	C	T	rs12194552	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	.	NM_001137560	exon3	c.C591T	p.R197R	CGAACGCGTCAAC	.	27	22	0	0	C|0.967;T|0.033	0	0	0	0	0
FAM46A	55603	broad.mit.edu	37	6	82461728	82461742	+	In_Frame_Del	DEL	CCGCCGAAGTCGCCG	CCGCCGAAGTCGCCG	-	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	FAM46A-90	NM_017633	exon2	c.117_131del	p.39_44del	CCGCCACCGCCGA	.	73	12	21	0	.	0	0	0	0	0
SMOC2	64094	hgsc.bcm.edu	37	6	168842113	168842113	+	Silent	SNP	T	T	G	rs73270928	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	SMOC2-91	NM_022138	exon1	c.T63G	p.A21A	GCCCGCTCAGAAG	.	33	27	0	0	T|0.654;G|0.346	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5427517	5427517	+	Silent	SNP	G	G	A	rs34693947	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	TNRC18-46	NM_001080495	exon5	c.C1938T	p.G646G	GCCGCCGCCCGCT	.	35	18	0	0	G|0.797;A|0.203	1	1	0	0	0
GTPBP10	85865	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	89982277	89982278	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	GTPBP10-68	NM_001042717	exon2	c.181_182del	p.61_61del	AAAGACAGGTATC	.	169	65	129	0	.	0	0	0	0	0
EPHB4	2050	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100417840	100417840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	EPHB4-1446	NM_004444	exon5	c.C887T	p.T296I	CCAATGGTGTTAG	.	141	64	130	1	.	36	23	13	0	0
TMEM229A	730130	hgsc.bcm.edu	37	7	123672457	123672462	+	In_Frame_Del	DEL	GCTGCT	GCTGCT	-	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	GCTGCT	GCTGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	.	NM_001136002	exon1	c.596_601del	p.199_201del	CCCTCCGCTGCTG	.	17	12	0	0	.	0	0	0	0	0
ATP6V0A4	50617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138413506	138413506	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	ATP6V0A4-91	NM_130841	exon17	c.G2010C	p.Q670H	CCTTACCTGGGAT	.	108	49	89	0	.	0	0	0	0	0
BHLHE22	27319	hgsc.bcm.edu	37	8	65493532	65493532	+	Missense_Mutation	SNP	T	T	A	rs62519835		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	BHLHE22-90	NM_152414	exon1	c.T185A	p.L62Q	CGCCCCTGGGCTG	.	12	5	0	0	T|0.935;A|0.065	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	4	4	0	0	A|0.118;G|0.882	1	0	1	0	0
FAM83H	286077	hgsc.bcm.edu	37	8	144809268	144809268	+	Missense_Mutation	SNP	C	C	T	rs56148058	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	FAM83H-92	NM_198488	exon5	c.G2363A	p.S788N	AGGCAGCTCTCGA	.	6	6	0	0	C|0.978;T|0.022	6	2	4	0	0
EPPK1	83481	bcgsc.ca	37	8	144940290	144940290	+	Missense_Mutation	SNP	C	C	G	rs201976887		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	EPPK1-25	NM_031308	exon1	c.G7132C	p.D2378H	TGGGGTCGGCCAG	.	518	27	114	2	.	0	0	0	0	0
SCRT1	83482	hgsc.bcm.edu	37	8	145557497	145557497	+	Missense_Mutation	SNP	A	A	C	rs7013127		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	.	NM_031309	exon2	c.T397G	p.S133A	CGGCAGAGCCGGC	.	4	4	0	0	A|0.096;C|0.904	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	7	7	0	0	G|0.992;C|0.006	2	0	2	0	0
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	8528683	8528683	+	Missense_Mutation	SNP	C	C	A	rs149175517	alternate_allele	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	PTPRD-912	NM_001040712	exon4	c.G449T	p.S150I	TTACCACTGGCTG	.	72	61	104	0	C|1.000;T|0.000	0	0	0	0	0
FREM1	158326	bcgsc.ca	37	9	14801687	14801687	+	Silent	SNP	T	T	C	rs10738380	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	FREM1-138	NM_144966	exon21	c.A3657G	p.A1219A	AACAGGTGCATGT	.	172	6	232	1	T|0.834;C|0.166	1	1	0	0	0
FANCG	2189	bcgsc.ca	37	9	35076482	35076482	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	FANCG-724	NM_004629	exon8	c.C1023A	p.G341G	CTGAGTGCCACAA	.	126	6	189	0	.	7	7	0	0	0
CNTNAP3	79937	hgsc.bcm.edu	37	9	39133031	39133031	+	Missense_Mutation	SNP	C	C	A	rs11794921	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	CNTNAP3-91	NM_033655	exon13	c.G1978T	p.A660S	CCGCTGCGTACGC	.	12	6	0	0	C|0.949;A|0.051	2	0	2	0	0
CRB2	286204	hgsc.bcm.edu	37	9	126136139	126136139	+	Missense_Mutation	SNP	C	C	T	rs73571431		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	CRB2-91	NM_173689	exon10	c.C3329T	p.T1110M	GTCACACGCACCC	.	7	5	0	0	C|0.875;T|0.125	0	0	0	0	0
FPGS	2356	hgsc.bcm.edu	37	9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	rs10760502	byfrequency	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	FPGS-90	NM_004957	exon1	c.A64G	p.I22V	CGCGGCATAACGA	.	5	5	0	0	A|0.235;G|0.765	6	0	6	0	0
SNAPC4	6621	broad.mit.edu	37	9	139277995	139277997	+	In_Frame_Del	DEL	GCT	GCT	-	rs34222232	alternate_allele	TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	SNAPC4-90	NM_003086	exon15	c.1624_1626del	p.542_542del	CTCCTCGCTGCTG	.	260	10	26	0	.	0	0	0	0	0
CD24	100133941	bcgsc.ca;mdanderson.org	37	Y	21154569	21154569	+	Silent	SNP	A	A	G	rs17855271		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	.	NM_013230	exon1	c.T27C	p.L9L	CAGCCCAAGCCTG	.	41	21	59	0	.	0	0	0	0	0
CD24	100133941	bcgsc.ca;mdanderson.org	37	Y	21154603	21154603	+	RNA	SNP	A	A	C	rs79788321		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	.	.	.	.	.	TCCCCTACGTCGG	.	49	39	30	0	.	0	0	0	0	0
SIX6	4990	broad.mit.edu	37	14	60977896	60977897	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	SIX6-90	NM_007374	exon2	c.667_668insC	p.A223fs	AGCCCGGCCGCCA	.	143	11	41	0	.	0	0	0	0	0
PELP1	27043	hgsc.bcm.edu	37	17	4576216	4576217	+	In_Frame_Ins	INS	-	-	GGCATGGGGCCTGCTGAA	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	PELP1-24	NM_014389	exon16	c.2070_2071insTTCAGCAGGCCCCATGCC	p.P690delinsPSAGPMP	TGCTGAGGGCATG	.	47	0	27	0	.	0	0	0	0	0
NEFH	4744	broad.mit.edu	37	22	29885622	29885623	+	In_Frame_Ins	INS	-	-	AGGAAG	novel		TCGA-OR-A5JJ-01A-11D-A29I-10	TCGA-OR-A5JJ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	dcf5e656-aebe-41de-8011-62b30c3ec4f2	17fa8960-7a43-4e72-a0fe-b97cf4734610	.	NEFH-90	NM_021076	exon4	c.1993_1994insAGGAAG	p.K665delinsKEE	CCTGAGAAGGCCA	.	490	9	421	0	.	0	0	0	0	0