Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
TAS1R3	83756	bcgsc.ca	37	1	1268159	1268159	+	Silent	SNP	C	C	T	rs3813210	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	TAS1R3-22	NM_152228	exon3	c.C1248T	p.P416P	CTGCCCCGCGCAG	.	129	5	87	0	C|0.874;T|0.126	4	4	0	0	0
EVI5	7813	hgsc.bcm.edu	37	1	93091457	93091457	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	EVI5-136	NM_005665	exon13	c.C1514A	p.A505E	AGCCTTGCAATAT	.	99	5	109	0	.	0	0	0	0	0
LCE1E	353135	broad.mit.edu	37	1	152760102	152760102	+	Silent	SNP	C	C	A	rs148574694		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	LCE1E-90	NM_178353	exon2	c.C327A	p.G109G	AGGGGGCAGCGGC	.	185	4	224	1	C|1.000;A|0.000	0	0	0	0	0
SPRR3	6707	ucsc.edu	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	SPRR3-45	NM_001097589	exon2	c.C219T	p.G73G	GCCAGGCTGTACC	.	153	23	155	0	A|0.000;C|0.697;T|0.303	0	0	0	0	0
SPRR3	6707	hgsc.bcm.edu	37	1	152975739	152975739	+	Silent	SNP	T	T	A	rs17851565	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	SPRR3-45	NM_001097589	exon2	c.T243A	p.G81G	GCCAGGTTGTACC	.	160	12	185	0	A|0.010;C|0.001;T|0.988	1	0	1	0	0
F5	2153	bcgsc.ca	37	1	169510380	169510380	+	Silent	SNP	G	G	A	rs9287090	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	F5-157	NM_000130	exon13	c.C3948T	p.L1316L	CTGACCGAGGGCT	.	266	8	346	2	G|0.758;A|0.242	0	0	0	0	0
LAMC2	3918	broad.mit.edu	37	1	183206566	183206566	+	Missense_Mutation	SNP	G	G	A	rs146907099	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	LAMC2-93	NM_005562	exon18	c.G2681A	p.R894H	TCAAGCGTACACA	.	324	6	426	1	G|0.999;A|0.001	4	4	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	5	4	1	0	C|0.643;T|0.357	0	0	0	0	0
OPTN	10133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	13152419	13152419	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	OPTN-70	NM_001008212	exon4	c.T312A	p.N104K	TGAGAATGAGAAA	.	256	25	287	0	.	26	24	2	0	0
FAM171A1	221061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	15256461	15256461	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	FAM171A1-138	NM_001010924	exon8	c.C1126G	p.P376A	ACAGCGGGCCAGG	.	87	12	70	0	.	1	0	1	0	0
MUC2	4583	bcgsc.ca	37	11	1092947	1092947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	MUC2-90	NM_002457	exon30	c.C4766A	p.T1589N	CCACCACCACTAC	.	187	10	209	4	.	0	0	0	0	0
MUC2	4583	bcgsc.ca	37	11	1093004	1093004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	MUC2-90	NM_002457	exon30	c.C4823A	p.P1608H	CGACACCCATCAC	.	148	6	154	0	.	0	0	0	0	0
MUC15	143662	bcgsc.ca	37	11	26587133	26587133	+	Silent	SNP	T	T	C	rs293980	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	MUC15-92	NM_001135092	exon3	c.A354G	p.S118S	TGCTGATGAGTTA	.	253	9	277	1	T|0.311;C|0.689	0	0	0	0	0
CKAP5	9793	broad.mit.edu	37	11	46829683	46829683	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	CKAP5-92	NM_001008938	exon8	c.876delA	p.K292fs	TTGCCATTTTTTT	.	6	2	17	0	.	0	0	0	0	0
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810209	65810209	+	Silent	SNP	C	C	T	rs61895584	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	GAL3ST3-91	NM_033036	exon3	c.G1065A	p.P355P	CTGCCACGGCTGC	.	4	4	0	0	C|0.233;T|0.767	0	0	0	0	0
MAP6	4135	bcgsc.ca	37	11	75298797	75298797	+	Silent	SNP	A	A	G	rs1231128	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	MAP6-226	NM_033063	exon4	c.T1749C	p.D583D	ACCTTCATCCTTG	.	261	8	336	3	A|0.685;G|0.315	25	25	0	0	0
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	108382838	108382838	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	EXPH5-95	NM_015065	exon6	c.3396delC	p.A1132fs	AGTTGAGGCATGT	.	75	22	98	0	.	0	0	0	0	0
KRT8	3856	broad.mit.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	KRT8-92	NM_001256282	exon2	c.T175G	p.S59A	TGCGGGAACCGGG	.	176	5	84	1	.	3	3	0	0	0
RIMBP2	23504	hgsc.bcm.edu	37	12	130921471	130921471	+	Silent	SNP	T	T	C	rs2292663	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	RIMBP2-142	NM_015347	exon10	c.A1971G	p.P657P	TGGCTGTGGCAGG	.	29	5	2	0	T|0.868;C|0.132	1	1	0	0	0
FAM194B	220081	hgsc.bcm.edu	37	13	46170719	46170719	+	Missense_Mutation	SNP	C	C	T	rs201041085	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	FAM194B-68	NM_182542	exon3	c.G422A	p.G141E	TCCTTCCCCAGAT	.	21	4	52	0	C|0.909;T|0.091	0	0	0	0	0
FAM194B	220081	hgsc.bcm.edu	37	13	46170726	46170726	+	Missense_Mutation	SNP	A	A	G	rs28548352		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	FAM194B-68	NM_182542	exon3	c.T415C	p.Y139H	CCAGATACTCTTC	.	22	11	46	0	.	0	0	0	0	0
FAM194B	220081	hgsc.bcm.edu	37	13	46170728	46170728	+	Missense_Mutation	SNP	T	T	C	rs45625342		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	FAM194B-68	NM_182542	exon3	c.A413G	p.E138G	AGATACTCTTCCT	.	20	9	46	0	.	0	0	0	0	0
FAM194B	220081	hgsc.bcm.edu	37	13	46170735	46170735	+	Missense_Mutation	SNP	C	C	T	rs28460344		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	FAM194B-68	NM_182542	exon3	c.G406A	p.E136K	CTTCCTCCTCCAG	.	18	15	46	0	.	0	0	0	0	0
FAM194B	220081	hgsc.bcm.edu	37	13	46170737	46170737	+	Missense_Mutation	SNP	T	T	C	rs200764156		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	FAM194B-68	NM_182542	exon3	c.A404G	p.E135G	TCCTCCTCCAGAT	.	19	16	46	0	.	0	0	0	0	0
MYCBP2	23077	ucsc.edu;bcgsc.ca	37	13	77837809	77837809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	MYCBP2-236	NM_015057	exon10	c.T1547C	p.L516P	TTTTCCAGATCGA	.	32	4	36	0	.	0	0	0	0	0
ITGBL1	9358	bcgsc.ca	37	13	102227872	102227872	+	Silent	SNP	C	C	T	rs3916912	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	ITGBL1-92	NM_004791	exon4	c.C561T	p.D187D	CATAGACGATGAA	.	108	5	215	0	C|0.831;T|0.169	1	1	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	8	8	0	0	A|0.226;C|0.774	0	0	0	0	0
AKAP13	11214	broad.mit.edu	37	15	86124623	86124623	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	AKAP13-258	NM_007200	exon7	c.A3324C	p.I1108I	GAATATATCACAC	.	174	5	193	0	.	0	0	0	0	0
CRTC3	64784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	91150615	91150615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	CRTC3-393	NM_022769	exon6	c.A482G	p.N161S	GGACCAATTCTGA	.	55	10	56	0	.	0	0	0	0	0
SEZ6L2	26470	hgsc.bcm.edu	37	16	29908433	29908433	+	Missense_Mutation	SNP	C	C	G	rs11649499	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	SEZ6L2-92	NM_001243332	exon3	c.G221C	p.R74P	GGGTCCCGATCAG	.	5	5	0	0	C|0.218;G|0.782	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	4	4	0	0	G|0.001;A|0.999	0	0	0	0	0
PITPNA	5306	hgsc.bcm.edu	37	17	1465837	1465837	+	Silent	SNP	C	C	T	rs142675143		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	PITPNA-227	NM_006224	exon1	c.G18A	p.E6E	TCACTACTCCTTG	.	14	4	0	0	C|0.982;T|0.018	0	0	0	0	0
HIC1	3090	hgsc.bcm.edu	37	17	1960974	1960974	+	Silent	SNP	C	C	T	rs77393586		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	HIC1-135	NM_001098202	exon2	c.C1047T	p.R349R	GGAGCGCGGCTCC	.	8	7	0	0	C|0.839;T|0.161	2	1	1	0	0
NLRP1	22861	bcgsc.ca	37	17	5436263	5436263	+	Missense_Mutation	SNP	C	C	T	rs2301582	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	NLRP1-274	NM_001033053	exon11	c.G3187A	p.V1063M	AAGGCACGCACAA	.	135	5	130	0	C|0.738;T|0.261	2	2	0	0	0
MYO18A	399687	bcgsc.ca	37	17	27413578	27413578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	MYO18A-22	NM_078471	exon39	c.C5730A	p.S1910R	CTCCAGGCTTTCT	.	72	4	64	0	.	1	1	0	0	0
NPTX1	4884	hgsc.bcm.edu	37	17	78449948	78449948	+	Missense_Mutation	SNP	C	C	T	rs144443274		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	NPTX1-90	NM_002522	exon1	c.G299A	p.G100D	GCCTCGCCGGCTC	.	16	11	0	0	C|0.910;T|0.090	0	0	0	0	0
ANKRD30B	374860	bcgsc.ca	37	18	14779969	14779969	+	Missense_Mutation	SNP	C	C	G	rs9675365	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	ANKRD30B-24	NM_001145029	exon11	c.C1431G	p.F477L	GATGTTCCCATCA	.	45	4	58	0	C|0.546;G|0.454	0	0	0	0	0
RAX	30062	hgsc.bcm.edu	37	18	56936395	56936395	+	Silent	SNP	T	T	C	rs7226481		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	RAX-90	NM_013435	exon3	c.A882G	p.Q294Q	GAGAGGTTGCAGG	.	5	4	0	0	T|0.767;C|0.233	0	0	0	0	0
CTDP1	9150	bcgsc.ca	37	18	77473086	77473086	+	Silent	SNP	G	G	A	rs599554	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	CTDP1-90	NM_004715	exon7	c.G978A	p.T326T	GGGCACGGGTGAT	.	105	5	114	0	A|0.215;C|0.003	2	2	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	10	10	0	0	C|0.766;T|0.234	8	0	8	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704002	29704002	+	Silent	SNP	T	T	C	rs11666764	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	UQCRFS1-226	NM_006003	exon1	c.A24G	p.S8S	CGGGCCTGAGCGG	.	4	4	0	0	T|0.072;C|0.928	0	0	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C	rs8100724	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	UQCRFS1-226	NM_006003	exon1	c.T16G	p.S6A	AGCGGGATGCTAC	.	4	4	0	0	A|0.065;C|0.935	0	0	0	0	0
SIPA1L3	23094	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38696869	38696869	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	SIPA1L3-91	NM_015073	exon22	c.A5335G	p.K1779E	GAGAAGAAGGAGC	.	485	55	211	2	.	3	3	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	15	8	1	0	T|0.545;C|0.455	0	0	0	0	0
DHX34	9704	broad.mit.edu	37	19	47883158	47883160	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	DHX34-231	NM_014681	exon14	c.2898_2900del	p.966_967del	GCAGCTGGAGGAG	.	531	6	251	0	.	0	0	0	0	0
HRC	3270	hgsc.bcm.edu	37	19	49657751	49657751	+	Silent	SNP	A	A	G	rs142699460	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	HRC-91	NM_002152	exon1	c.T744C	p.D248D	ATCATCATCGTCA	.	128	13	72	0	A|0.998;G|0.002	1	1	0	0	0
KLK11	11012	bcgsc.ca	37	19	51530741	51530741	+	Missense_Mutation	SNP	C	C	G	rs61752567	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	KLK11-650	NM_144947	exon1	c.G33C	p.K11N	CGATGACTTCCAG	.	140	5	105	0	C|0.927;G|0.073	0	0	0	0	0
FPR1	2357	broad.mit.edu	37	19	52249473	52249473	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	FPR1-524	NM_001193306	exon3	c.G775C	p.V259L	CCACCACCTGATA	.	182	5	135	0	.	2	2	0	0	0
NLRP4	147945	bcgsc.ca	37	19	56369593	56369593	+	Silent	SNP	T	T	C	rs421810	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	NLRP4-216	NM_134444	exon3	c.T834C	p.A278A	CATCGCTATCAAA	.	116	5	124	0	T|0.546;C|0.454	0	0	0	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	7	7	0	0	G|0.301;C|0.699	0	0	0	0	0
TMEM247	388946	bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	.	NM_001145051	exon2	c.C382G	p.Q128E	CAGCGGCAGCGGC	.	471	49	225	3	G|1.000;|0.000	0	0	0	0	0
MIR663B	100313824	bcgsc.ca	37	2	133014602	133014602	+	RNA	SNP	G	G	C	rs75245503	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	.	.	.	.	.	CAGACAGGAGGGA	.	133	41	35	2	G|0.500;C|0.500	0	0	0	0	0
SCRN3	79634	ucsc.edu	37	2	175292599	175292599	+	Missense_Mutation	SNP	T	T	G	rs74729826	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	SCRN3-91	NM_024583	exon8	c.T1251G	p.N417K	GTCAAATTTATCA	.	145	24	187	0	T|0.842;G|0.157	2	2	0	0	0
SNED1	25992	hgsc.bcm.edu	37	2	242011084	242011084	+	Missense_Mutation	SNP	T	T	C	rs17440466	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	SNED1-72	NM_001080437	exon25	c.T3683C	p.L1228P	CGGAGCTGCGCCT	.	20	7	2	0	T|0.877;C|0.123	12	10	2	0	0
FRG1B	284802	bcgsc.ca	37	20	29623219	29623219	+	RNA	SNP	A	A	G	rs34726194		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	FRG1B-22	.	.	.	.	TCGACAATGGTCT	.	867	26	847	17	.	26	26	0	0	0
CDH4	1002	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	60427870	60427870	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	CDH4-282	NM_001794	exon6	c.A793G	p.I265V	CTGTACATCTACG	.	444	69	237	1	.	0	0	0	0	0
RTDR1	27156	bcgsc.ca	37	22	23482483	23482483	+	Missense_Mutation	SNP	G	G	A	rs35211242	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	RTDR1-516	NM_014433	exon2	c.C125T	p.T42M	TGCCTCGTCTGGA	.	123	7	149	0	G|0.894;A|0.106	0	0	0	0	0
ASPHD2	57168	bcgsc.ca	37	22	26830285	26830285	+	Missense_Mutation	SNP	A	A	G	rs34902186	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	ASPHD2-69	NM_020437	exon2	c.A704G	p.N235S	TGGTCAATCAGGG	.	136	7	252	0	A|0.946;G|0.054	1	1	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	5	5	0	0	G|0.237;C|0.763	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	5	5	0	0	G|0.252;C|0.748	0	0	0	0	0
OR5H6	79295	broad.mit.edu	37	3	97983207	97983207	+	Missense_Mutation	SNP	G	G	C	rs137937308	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	OR5H6-137	NM_001005479	exon1	c.G79C	p.E27Q	CTGACAGAGTTTG	.	165	3	150	0	G|0.997;C|0.003	0	0	0	0	0
LRRC58	116064	hgsc.bcm.edu	37	3	120068022	120068022	+	Silent	SNP	C	C	G	rs6770482		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	.	NM_001099678	exon1	c.G69C	p.V23V	GGTGGACACGCTG	.	5	5	0	0	C|0.826;G|0.174	0	0	0	0	0
TNIP2	79155	hgsc.bcm.edu	37	4	2757800	2757800	+	Missense_Mutation	SNP	G	G	C	rs74548850	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	TNIP2-90	NM_024309	exon1	c.C217G	p.R73G	GGAAGCGCGCAAC	.	17	9	0	0	G|0.957;C|0.043	0	0	0	0	0
DOK7	285489	hgsc.bcm.edu	37	4	3495095	3495095	+	Missense_Mutation	SNP	G	G	A	rs9684786	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	DOK7-91	NM_173660	exon7	c.G1382A	p.G461D	CCCAGGGCAGCGA	.	14	11	0	0	G|0.834;A|0.166	0	0	0	0	0
WDR1	9948	broad.mit.edu	37	4	10084680	10084680	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	WDR1-48	NM_017491	exon10	c.1162delG	p.V388fs	ACCGCACGGTGTC	.	285	7	184	0	.	0	0	0	0	0
BEND4	389206	broad.mit.edu;bcgsc.ca	37	4	42145732	42145732	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	BEND4-90	NM_001159547	exon3	c.A767T	p.Y256F	AGCAGGTAATTTT	.	149	6	129	1	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537126	88537126	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	DSPP-90	NM_014208	exon5	c.C3312T	p.D1104D	CAGCGACAGCAGC	.	498	63	252	6	.	0	0	0	0	0
PKD2	5311	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88996821	88996821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	PKD2-91	NM_000297	exon15	c.A2882G	p.N961S	GTGGAAATGGGAG	.	137	31	83	0	.	5	4	1	0	0
ZNF131	7690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	43161449	43161449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	ZNF131-90	NM_003432	exon5	c.C470T	p.S157L	CTGAGTCATTGCC	.	228	51	160	0	.	2	2	0	0	0
PCDHB10	56126	mdanderson.org	37	5	140573844	140573844	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	PCDHB10-92	NM_018930	exon1	c.C1719T	p.T573T	CTGCACCGAGCTG	.	31	15	8	0	.	46	44	2	0	0
PCDHB13	56123	hgsc.bcm.edu	37	5	140595625	140595625	+	Missense_Mutation	SNP	G	G	A	rs76927815		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	PCDHB13-93	NM_018933	exon1	c.G1930A	p.V644I	GTGCTGGTCAAGG	.	57	25	5	0	G|0.500;A|0.500	134	131	3	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	8	8	0	0	G|0.585;C|0.415	0	0	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	10	7	1	0	T|0.441;C|0.559	1	1	0	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	6	6	1	0	C|0.673;A|0.327	0	0	0	0	0
PTCHD4	442213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	47976553	47976553	+	Missense_Mutation	SNP	C	C	T	rs191919500	by1000genomes	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	.	NM_001013732	exon2	c.G724A	p.V242M	TCAGCACGAGGCT	.	182	43	204	0	C|0.999;T|0.000	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	6	5	1	0	C|0.329;G|0.671	3	2	1	0	0
CLDN23	137075	hgsc.bcm.edu	37	8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	rs12548737	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	.	NM_194284	exon1	c.G628A	p.V210M	ATCCAAGTGGAGT	.	8	8	1	0	G|0.907;A|0.093	3	0	3	0	0
KAT6A	7994	hgsc.bcm.edu	37	8	41798484	41798484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	.	NM_001099412	exon16	c.G2915A	p.R972H	CTGTAGCGACGGG	.	73	3	55	0	.	1	1	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	7	6	0	0	A|0.738;G|0.262	5	1	4	0	0
SHARPIN	81858	hgsc.bcm.edu	37	8	145158503	145158503	+	Silent	SNP	G	G	T	rs11136254		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	SHARPIN-523	NM_030974	exon1	c.C154A	p.R52R	CAGGCCGCTCAGG	.	4	4	0	0	G|0.108;T|0.892	10	0	10	0	0
PTPRD	5789	broad.mit.edu	37	9	8485823	8485823	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	PTPRD-912	NM_002839	exon28	c.G2994A	p.T998T	TTTGCTCGTATGA	.	155	6	145	1	.	0	0	0	0	0
CRB2	286204	hgsc.bcm.edu	37	9	126135831	126135831	+	Silent	SNP	T	T	C	rs7848449	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	CRB2-91	NM_173689	exon10	c.T3021C	p.A1007A	GCTGGCTGAGAAC	.	14	5	0	0	T|0.886;C|0.114	0	0	0	0	0
PPP6C	5537	broad.mit.edu	37	9	127951863	127951863	+	Silent	SNP	G	G	A	rs466994	byfrequency	TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	PPP6C-227	NM_001123355	exon1	c.C135T	p.F45F	AGAAAGGAAGGGC	.	35	3	22	0	G|0.563;A|0.437	0	0	0	0	0
SSX1	6756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48123217	48123217	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	SSX1-522	NM_005635	exon6	c.A331T	p.I111F	ATAAAGATCATGC	.	210	29	169	0	.	0	0	0	0	0
ZC3H12B	340554	broad.mit.edu	37	X	64719018	64719018	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	ZC3H12B-131	NM_001010888	exon3	c.G888T	p.V296V	CATTGTGTCCAAT	.	138	4	101	0	.	0	0	0	0	0
SPIRE2	84501	broad.mit.edu	37	16	89916879	89916880	+	In_Frame_Ins	INS	-	-	GAG	rs146569219		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	SPIRE2-90	NM_032451	exon3	c.456_457insGAG	p.P152delinsPE	GGGTCCCGAGGAG	.	66	12	10	0	-|0.923;GAG|0.077	0	0	0	0	0
ABCA5	23461	broad.mit.edu	37	17	67302911	67302912	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	ABCA5-93	NM_172232	exon6	c.743_744insA	p.I248fs	TCTTTTATTTTTT	.	7	2	14	0	.	0	0	0	0	0
EML6	400954	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	55074739	55074740	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	.	NM_001039753	exon8	c.1166_1167insT	p.S389fs	ACGGCTCTTTCAT	.	102	20	83	0	.	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135012429	135012430	+	Missense_Mutation	DNP	TT	TT	AC	novel		TCGA-OR-A5JI-01A-11D-A29I-10	TCGA-OR-A5JI-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3635255-1c8d-4532-b4ff-00d04a20ff79	6477b685-8285-40b9-ab7a-8faf6afd602e	.	KNDC1-229	NM_152643	exon14	c.T2418C	p.V806D	TGGAGTTGCTTCC	.	4	0	0	0	T|0.470;C|0.530	0	0	0	0	0