Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 SAMD11 148398 hgsc.bcm.edu 37 1 877831 877831 + Missense_Mutation SNP T T C rs6672356 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SAMD11-90 NM_152486 exon10 c.T1027C p.W343R TTCGCCTGGCAGC . 6 6 0 0 T|0.004;C|0.996 0 0 0 0 0 VPS13D 55187 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 12294377 12294377 + Silent SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . VPS13D-95 NM_015378 exon2 c.C54G p.V18V ATATGTCAATAAC . 172 56 122 0 . 1 1 0 0 0 PRAMEF4 400735 broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 12939472 12939472 + Missense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PRAMEF4-45 NM_001009611 exon4 c.G1330A p.V444M CCCTCACTCTGTT . 1237 116 776 0 . 0 0 0 0 0 AGMAT 79814 hgsc.bcm.edu 37 1 15911349 15911349 + Silent SNP G G A rs3737705 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . AGMAT-91 NM_024758 exon1 c.C114T p.D38D GGGCGCGTCGGAA . 14 7 0 0 G|0.647;A|0.353 0 0 0 0 0 MYOM3 127294 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 24385424 24385424 + Missense_Mutation SNP A A T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MYOM3-93 NM_152372 exon36 c.T4040A p.M1347K TCTTCCATGATAG . 123 34 99 0 . 0 0 0 0 0 NIPAL3 57185 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 24786973 24786973 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . NIPAL3-90 NM_020448 exon10 c.G865C p.A289P GCAGGTGCAATAT . 129 51 86 0 . 0 0 0 0 0 BAI2 576 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 32209956 32209956 + Missense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . BAI2-526 NM_001703 exon6 c.G925A p.D309N CCGGGTCGCCTAC . 86 30 32 0 . 0 0 0 0 0 EPHA10 284656 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 38230726 38230726 + Missense_Mutation SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . EPHA10-1246 NM_001099439 exon1 c.G13C p.A5P GACCGGCGCAGGT . 71 28 28 0 . 0 0 0 0 0 EXO5 64789 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 40981323 40981323 + Silent SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_022774 exon3 c.C1107G p.V369V CCAAGTCAAAAAA . 119 31 71 0 . 16 10 6 0 0 TTC4 7268 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 55188440 55188440 + Missense_Mutation SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TTC4-90 NM_004623 exon5 c.C562G p.L188V AAGCTTCTGGAAA . 244 51 107 0 . 16 9 7 0 0 SGIP1 84251 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 67098763 67098763 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SGIP1-93 NM_032291 exon3 c.G85A p.D29N TCACCAGATAGAG . 87 39 45 0 . 0 0 0 0 0 ZRANB2 9406 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 71538205 71538205 + Missense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ZRANB2-92 NM_005455 exon5 c.G328A p.E110K CATTTTCTCTTTC . 161 32 165 0 . 14 11 3 0 0 FPGT-TNNI3K 100526835 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 74929142 74929142 + Missense_Mutation SNP A A T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_001199327 exon23 c.A2332T p.M778L GCAGACATGGCTT . 191 98 107 0 . 0 0 0 0 0 C1orf173 127254 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 75038013 75038013 + Missense_Mutation SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . C1orf173-94 NM_001002912 exon14 c.G3381C p.E1127D TTCGTTCTCAGCA . 18 6 24 0 . 0 0 0 0 0 SLC44A5 204962 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 75805310 75805310 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SLC44A5-95 NM_001130058 exon4 c.C58A p.P20T TCCTTGGATCACC . 57 37 30 0 . 0 0 0 0 0 SAMD13 148418 hgsc.bcm.edu 37 1 84764249 84764249 + Silent SNP A A G rs1156085 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SAMD13-226 NM_001010971 exon1 c.A9G p.G3G GCGGGGAGGTAAG . 49 14 7 0 A|0.979;G|0.021 0 0 0 0 0 CTBS 1486 broad.mit.edu 37 1 85039999 85040007 + In_Frame_Del DEL GCAGCGCCA GCAGCGCCA - rs142534762 bycluster;by1000genomes;alternate_allele TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CTBS-90 NM_004388 exon1 c.92_100del p.31_34del CGAGCCGCAGCGC . 75 17 15 0 . 0 0 0 0 0 KIAA1107 23285 bcgsc.ca 37 1 92632562 92632562 + Silent SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . . . . . GCTAATCATCAGT . 410 102 231 3 . 0 0 0 0 0 WDR47 22911 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 1 109544988 109544988 + Missense_Mutation SNP T T C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . WDR47-91 NM_001142550 exon7 c.A1315G p.R439G TTTGCCTATAATA . 28 13 36 0 . 0 0 0 0 0 CEPT1 10390 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 111725483 111725483 + Silent SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CEPT1-90 NM_001007794 exon7 c.C909A p.I303I AATGATCTACAAG . 212 104 152 0 . 15 4 11 0 0 HSD3B1 3283 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 120056635 120056635 + Silent SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . HSD3B1-92 NM_000862 exon4 c.G489A p.E163E TGCTGAGAAGGCT . 76 32 87 0 . 0 0 0 0 0 NBPF7 343505 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 120385066 120385066 + Missense_Mutation SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . NBPF7-24 NM_001047980 exon2 c.G328C p.E110Q GCTCCTCAGCTTG . 69 37 96 0 . 1 1 0 0 0 ADAM30 11085 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 120438173 120438173 + Missense_Mutation SNP G G A rs200088734 alternate_allele TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ADAM30-228 NM_021794 exon1 c.C787T p.R263C CAACGCGTATTTT . 30 12 63 0 . 0 0 0 0 0 C1orf54 79630 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 150248174 150248174 + Missense_Mutation SNP T T C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . C1orf54-90 NM_024579 exon3 c.T155C p.I52T TCACCATTGATTA . 199 85 124 0 . 54 53 1 0 0 HRNR 388697 broad.mit.edu;bcgsc.ca 37 1 152188371 152188371 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . HRNR-93 NM_001009931 exon3 c.C5734A p.Q1912K CGTGTTGTTCACC . 3986 242 1519 1 . 0 0 0 0 0 FLG 2312 hgsc.bcm.edu;bcgsc.ca 37 1 152276933 152276933 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FLG-106 NM_002016 exon3 c.10429delC p.R3477fs GCCCACGGGAGGC . 504 212 145 2 . 0 0 0 0 0 FLG 2312 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 152286710 152286710 + Missense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FLG-106 NM_002016 exon3 c.G652A p.E218K TATTTTCATAATC . 123 25 97 0 . 0 0 0 0 0 LCE4A 199834 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 152681610 152681610 + Missense_Mutation SNP A A G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . LCE4A-90 NM_178356 exon1 c.A59G p.K20R TCCCCAAGTATCC . 356 66 142 0 . 0 0 0 0 0 SPRR4 163778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 152944424 152944424 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SPRR4-68 NM_173080 exon2 c.C58A p.Q20K GCCCAGCAGCAGC . 423 73 164 0 . 0 0 0 0 0 ADAM15 8751 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 155028275 155028275 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ADAM15-651 NM_001261464 exon7 c.G652A p.V218M CGGGATGTGGTAA . 473 183 195 0 . 0 0 0 0 0 BCAN 63827 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 156628418 156628418 + Missense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . BCAN-516 NM_021948 exon13 c.C2521T p.R841C GTGCTTCGCTACC . 594 118 169 1 . 0 0 0 0 0 ATP1A4 480 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 160141399 160141399 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ATP1A4-94 NM_144699 exon12 c.G1706T p.S569I TGCCTAGCAGCTT . 30 25 36 0 . 0 0 0 0 0 ASTN1 460 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 176852120 176852120 + Silent SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ASTN1-319 NM_207108 exon20 c.G3237A p.L1079L AAAGCTCAGCACT . 218 82 169 0 . 0 0 0 0 0 TOR3A 64222 hgsc.bcm.edu 37 1 179051300 179051300 + Missense_Mutation SNP T T C rs2296377 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TOR3A-90 NM_022371 exon1 c.T37C p.F13L CTCTTTTTCCTGC . 6 6 0 0 T|0.229;C|0.771 0 0 0 0 0 ACBD6 84320 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 180471345 180471345 + Silent SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ACBD6-91 NM_032360 exon1 c.G57C p.L19L TGAGCTCAGCTCT . 313 122 240 2 . 39 19 20 0 0 RGSL1 353299 broad.mit.edu 37 1 182443462 182443462 + Silent SNP T T C rs649437 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . RGSL1-226 NM_001137669 exon6 c.T1216C p.L406L CAGGACTTGCAGC . 307 7 208 2 T|0.553;C|0.447 0 0 0 0 0 RNF2 6045 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 185069018 185069018 + Nonsense_Mutation SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . RNF2-658 NM_007212 exon6 c.C833G p.S278X GTGAATCAAACCA . 334 121 254 2 . 15 13 2 0 0 RNPEP 6051 hgsc.bcm.edu 37 1 201951890 201951890 + Silent SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . RNPEP-91 NM_020216 exon1 c.G96T p.R32R CTTCCGGGCCTTT . 50 4 10 0 . 1 1 0 0 0 GPATCH2 55105 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 217793701 217793701 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . GPATCH2-91 NM_018040 exon2 c.G197T p.R66M CTTTTCCTTGCCT . 85 60 58 0 . 2 0 2 0 0 MARK1 4139 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 220835222 220835222 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MARK1-802 NM_018650 exon18 c.G2102T p.R701L CTTTGCGGTTCAC . 191 147 163 1 . 9 0 9 0 0 OBSCN 84033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 228471220 228471220 + Silent SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . OBSCN-403 NM_001271223 exon38 c.C10041T p.F3347F CTGCTTCACAGAG . 318 102 181 0 . 0 0 0 0 0 OBSCN 84033 hgsc.bcm.edu 37 1 228504670 228504670 + Missense_Mutation SNP C C T rs11810627 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . OBSCN-403 NM_001271223 exon62 c.C16417T p.R5473W TCTGCGCGGCTCA . 9 9 0 0 C|0.643;T|0.357 0 0 0 0 0 KIF26B 55083 bcgsc.ca 37 1 245582995 245582995 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . KIF26B-25 NM_018012 exon4 c.G1114C p.V372L TCCTGCGTGGCCA . 361 272 225 4 . 0 0 0 0 0 OR2W5 441932 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 247654468 247654468 + Silent SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . OR2W5-115 NM_001004698 exon1 c.C39T p.I13I ATTCATCCTGGTG . 143 106 88 0 . 0 0 0 0 0 FBXO18 84893 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 5979171 5979172 + Frame_Shift_Del DEL GC GC - novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 GC GC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FBXO18-228 NM_032807 exon22 c.3213_3214del p.1071_1072del GCAGGTGCGCGCC . 239 76 181 0 . 0 0 0 0 0 FAM171A1 221061 broad.mit.edu 37 10 15326029 15326029 + Missense_Mutation SNP G G T rs76275809 alternate_allele TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FAM171A1-138 NM_001010924 exon2 c.C173A p.T58N TGGTTGGTGAAGA . 114 3 78 0 G|0.500;C|0.500 0 0 0 0 0 ITGA8 8516 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 15761654 15761654 + Silent SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ITGA8-230 NM_003638 exon1 c.C117T p.F39F CAGGTTGAACGCC . 44 14 16 0 . 0 0 0 0 0 WDFY4 57705 broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 50184861 50184861 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . WDFY4-22 NM_020945 exon59 c.C9128A p.A3043E CCTGTGCGGGAGC . 208 80 135 1 . 1 1 0 0 0 ANK3 288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 61847904 61847904 + Splice_Site SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ANK3-107 NM_001149 exon8 c.942+1G>T . ACATTACCTGGAG . 58 24 47 0 . 0 0 0 0 0 HKDC1 80201 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 71018532 71018532 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . HKDC1-95 NM_025130 exon15 c.G2033A p.G678E TTCTAGGAACAGG . 99 30 79 0 . 0 0 0 0 0 NRG3 10718 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 84733611 84733611 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . NRG3-522 NM_001010848 exon7 c.C1352A p.P451H TCGGCCCCCAGTC . 298 129 159 1 . 0 0 0 0 0 LRIT2 340745 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 85982398 85982398 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . LRIT2-92 NM_001017924 exon3 c.G931T p.E311X CCAGCTCTGACAG . 364 137 247 0 . 0 0 0 0 0 PLCE1 51196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 96084321 96084321 + Silent SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PLCE1-229 NM_016341 exon31 c.G6717A p.V2239V GCAGGTGCAGGTA . 90 33 72 0 . 0 0 0 0 0 RBM20 282996 hgsc.bcm.edu 37 10 112404302 112404302 + Silent SNP G G A rs35141404 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_001134363 exon1 c.G90A p.R30R TGCCCGGGCGTCC . 22 17 0 0 G|0.808;A|0.192 0 0 0 0 0 HSPA12A 259217 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 118451896 118451896 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . HSPA12A-206 NM_025015 exon6 c.C629G p.P210R TTGGCCGGCTGCT . 141 57 75 0 . 1 1 0 0 0 C10orf120 399814 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 124457937 124457937 + Missense_Mutation SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . C10orf120-91 NM_001010912 exon3 c.G320C p.R107T AGCATTCTGCATT . 184 68 106 0 . 0 0 0 0 0 MKI67 4288 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 129903549 129903549 + Silent SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MKI67-519 NM_002417 exon13 c.G6555A p.K2185K TTTTCCCTTAGGA . 164 52 167 1 . 8 2 6 0 0 ZNF511 118472 hgsc.bcm.edu 37 10 135122507 135122507 + Silent SNP G G A rs3008357 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ZNF511-90 NM_145806 exon1 c.G60A p.P20P GGAGCCGCTGCCT . 9 6 1 0 G|0.816;A|0.184 1 1 0 0 0 ECHS1 1892 hgsc.bcm.edu 37 10 135186834 135186834 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ECHS1-90 NM_004092 exon1 c.G4T p.A2S GGGCGGCCATGGC . 41 28 0 0 . 19 4 15 0 0 MUC2 4583 bcgsc.ca 37 11 1093022 1093022 + Missense_Mutation SNP C C T rs200733547 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MUC2-90 NM_002457 exon30 c.C4841T p.T1614M CCACTACGGTGAC . 165 22 106 2 . 0 0 0 0 0 MUC2 4583 bcgsc.ca 37 11 1093254 1093254 + Silent SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MUC2-90 NM_002457 exon30 c.C5073T p.T1691T ACCCACCGGCACA . 149 12 86 4 . 0 0 0 0 0 MUC2 4583 broad.mit.edu 37 11 1093299 1093299 + Silent SNP G G A rs113492997 alternate_allele TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MUC2-90 NM_002457 exon30 c.G5118A p.T1706T CACTACGGTGACC . 163 6 118 0 . 0 0 0 0 0 MUC5B 727897 hgsc.bcm.edu;bcgsc.ca 37 11 1253980 1253980 + Missense_Mutation SNP A A G rs202127660 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_002458 exon17 c.A2045G p.D682G TCAGCGACTGGAG . 128 16 31 0 . 0 0 0 0 0 BRSK2 9024 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 1472024 1472024 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . BRSK2-333 NM_001256630 exon14 c.G1633T p.V545F CTGCAAGGTGAGT . 361 155 186 1 . 0 0 0 0 0 NUP98 4928 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 3752722 3752722 + Silent SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . NUP98-703 NM_005387 exon14 c.C1680A p.V560V TGGCCGGACTCTA . 133 56 108 0 . 2 1 1 0 0 OR51E1 143503 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 4674519 4674519 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . OR51E1-114 NM_152430 exon2 c.G763T p.V255L TTCTATGTACCTT . 147 41 107 0 . 0 0 0 0 0 OR52N2 390077 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 5842285 5842285 + Silent SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . OR52N2-70 NM_001005174 exon1 c.C720T p.F240F AGCCTTCAGCACC . 294 101 205 1 . 0 0 0 0 0 OR52E6 390078 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 5862980 5862980 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . OR52E6-68 NM_001005167 exon1 c.G148T p.V50L GGATCACAAAGAA . 257 61 157 0 . 0 0 0 0 0 OR52L1 338751 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 6007764 6007764 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . OR52L1-91 NM_001005173 exon1 c.C397A p.L133I CCACAAGTACCCC . 242 75 154 0 . 0 0 0 0 0 SMPD1 6609 hgsc.bcm.edu 37 11 6413009 6413009 + Silent SNP A A C rs2682091 byfrequency;alternate_allele TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SMPD1-90 NM_000543 exon2 c.A714C p.A238A GCCCGCATCCCGG . 62 5 11 0 A|0.960;G|0.040 16 15 1 0 0 DNHD1 144132 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 6554962 6554962 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . DNHD1-24 NM_144666 exon14 c.G2557C p.V853L GAATACGTACGGG . 329 122 245 1 . 0 0 0 0 0 CALCA 796 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 14991506 14991506 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CALCA-514 NM_001033953 exon3 c.C202G p.Q68E GCTCCTGCTCCAG . 346 105 252 0 . 0 0 0 0 0 LUZP2 338645 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 25071584 25071584 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . LUZP2-92 NM_001009909 exon10 c.766delC p.P256fs TTTAAGCCTCAAC . 52 21 49 0 . 0 0 0 0 0 FIBIN 387758 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 27016195 27016195 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FIBIN-68 NM_203371 exon1 c.G122T p.G41V CCGATGGGGACTA . 165 66 92 0 . 0 0 0 0 0 HIPK3 10114 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 33363182 33363182 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . HIPK3-336 NM_001048200 exon8 c.G1847T p.C616F TTGGTTGTGGTGA . 120 40 87 0 . 1 1 0 0 0 PAMR1 25891 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 35547114 35547114 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PAMR1-70 NM_001001991 exon1 c.C20A p.T7K AACTGCGTCCAGC . 112 26 72 0 . 0 0 0 0 0 LRRC4C 57689 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 40136500 40136500 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . LRRC4C-521 NM_001258419 exon7 c.C1343T p.T448I GGAGTAGTGGTTG . 227 77 171 0 . 0 0 0 0 0 OR4P4 81300 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 55405833 55405833 + Splice_Site SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . OR4P4-68 . . . . CTGGACCATGGAA . 19 11 30 0 . 0 0 0 0 0 OR10W1 81341 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 58035112 58035112 + Silent SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . OR10W1-69 NM_207374 exon1 c.G219T p.L73L GTTGGCCAGGATA . 130 49 100 1 . 0 0 0 0 0 OR5B12 390191 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 58206694 58206694 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . OR5B12-68 NM_001004733 exon1 c.G931T p.G311X TGAATCCTATAGA . 25 10 33 0 . 0 0 0 0 0 TMEM138 51524 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 61133533 61133533 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TMEM138-90 NM_016464 exon3 c.G145A p.V49I ATTGCAGTCCTCT . 152 47 107 0 . 55 25 30 0 0 SCGB2A1 4246 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 61978049 61978049 + Missense_Mutation SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SCGB2A1-90 NM_002407 exon2 c.C220G p.L74V AGAACTCTGAAAA . 104 39 59 0 . 0 0 0 0 0 MUS81 80198 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 65631183 65631183 + Missense_Mutation SNP A A G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MUS81-227 NM_025128 exon9 c.A952G p.R318G AATCCTAGAGACC . 340 114 208 1 . 4 1 3 0 0 XRRA1 143570 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 74563036 74563036 + Missense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . XRRA1-68 NM_182969 exon13 c.G1238A p.R413Q ATACCTCGTGTAT . 164 68 104 0 . 0 0 0 0 0 FAT3 120114 ucsc.edu;bcgsc.ca 37 11 92534976 92534976 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FAT3-73 NM_001008781 exon9 c.G8797C p.V2933L GGGAATGTGAAGG . 236 77 169 2 . 0 0 0 0 0 SLC36A4 120103 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 92881943 92881943 + Silent SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SLC36A4-93 NM_152313 exon11 c.C1275T p.S425S CAATGTGCTGCTG . 201 81 168 0 . 33 22 11 0 0 KIAA1731 85459 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 93457488 93457488 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . KIAA1731-22 NM_033395 exon22 c.G6265C p.D2089H GATTTTGACTTAT . 66 16 49 0 . 6 4 2 0 0 VSTM5 387804 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 93554296 93554296 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_001144871 exon2 c.C285A p.D95E GACTCTGTCCTTG . 362 125 265 0 . 0 0 0 0 0 AASDHPPT 60496 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 105950341 105950341 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . AASDHPPT-90 NM_015423 exon2 c.C331A p.H111N ATCTCTCATCAAG . 134 44 118 0 . 17 12 5 0 0 C11orf87 399947 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 11 109294764 109294764 + Silent SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . C11orf87-92 NM_207645 exon2 c.C405G p.P135P GCAGCCCCGGGAC . 67 31 18 0 . 0 0 0 0 0 CBL 867 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 119149280 119149280 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CBL-4020 NM_005188 exon9 c.G1288T p.V430L CCCATCGTGGTAG . 206 58 197 0 . 1 0 1 0 0 PVRL1 5818 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 119510594 119510594 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PVRL1-90 NM_203285 exon6 c.C1132A p.P378T TCTCCGGTGGGCT . 119 35 97 0 . 0 0 0 0 0 PVRL1 5818 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 119548456 119548456 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PVRL1-90 NM_002855 exon3 c.G542T p.S181I ACCACACTGGGAG . 280 98 246 0 . 3 1 2 0 0 TMEM136 219902 hgsc.bcm.edu;bcgsc.ca 37 11 120198134 120198134 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TMEM136-91 NM_001198670 exon2 c.G50T p.W17L GGTTTTGGTCTTT . 73 4 77 0 . 0 0 0 0 0 TMEM225 338661 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 123754008 123754008 + Missense_Mutation SNP A A G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TMEM225-93 NM_001013743 exon4 c.T515C p.L172P ATGTTCAGGCAGG . 111 35 91 0 . 0 0 0 0 0 NCAPD2 9918 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 6639952 6639952 + Silent SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . NCAPD2-660 NM_014865 exon30 c.G3933A p.Q1311Q TAGCCAGAGAGCG . 112 48 88 0 . 137 60 77 0 0 FAM90A1 55138 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 8375115 8375115 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FAM90A1-91 NM_018088 exon7 c.C698A p.P233H CCCGCAGGGCTGC . 126 25 71 0 . 0 0 0 0 0 GPR19 2842 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 12814767 12814767 + Missense_Mutation SNP A A T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . GPR19-91 NM_006143 exon4 c.T616A p.W206R TGTCCCAGTTGGA . 82 36 93 0 . 0 0 0 0 0 PIK3C2G 5288 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 18435177 18435177 + Silent SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PIK3C2G-1312 NM_004570 exon2 c.C162T p.Y54Y ACACTACGAGAGT . 80 21 92 0 . 0 0 0 0 0 TMTC1 83857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 29786206 29786206 + Silent SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TMTC1-90 NM_001193451 exon6 c.G1002T p.L334L ATAGCACAGGGTC . 233 86 131 0 . 0 0 0 0 0 PLEKHA8P1 51054 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 45568015 45568015 + RNA SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PLEKHA8P1-226 . . . . AGAAAAGTATTAC . 169 56 163 0 . 6 4 2 0 0 RAPGEF3 10411 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 48131974 48131974 + Splice_Site SNP A A T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . RAPGEF3-660 NM_006105 exon27 c.2455+2T>A . CCTCTCACCAGGG . 204 70 141 0 . 0 0 0 0 0 TUBA1C 84790 ucsc.edu 37 12 49666152 49666152 + Silent SNP G G A rs199599214 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TUBA1C-90 NM_032704 exon4 c.G492A p.K164K CAAGAAGTCCAAG . 227 10 243 16 G|0.998;A|0.002 1284 748 535 0 1 SCN8A 6334 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 52163733 52163733 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SCN8A-29 NM_014191 exon18 c.G3454C p.E1152Q CAGCCTGAGGAAT . 200 63 124 0 . 0 0 0 0 0 FIGNL2 401720 hgsc.bcm.edu 37 12 52215211 52215211 + Silent SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_001013690 exon2 c.C987T p.P329P CTTGAGGGGGACG . 46 24 1 0 . 0 0 0 0 0 KRT75 9119 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 52827680 52827680 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . KRT75-90 NM_004693 exon1 c.C409A p.Q137K CGATTTGCAGGTG . 302 84 205 1 . 0 0 0 0 0 KRT2 3849 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 53044230 53044230 + Silent SNP C C A rs141066050 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . KRT2-92 NM_000423 exon2 c.G693T p.G231G GATATACCCCTGG . 163 54 113 2 C|1.000;A|0.000 0 0 0 0 0 SPRYD3 84926 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 53470946 53470946 + Silent SNP T T A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SPRYD3-90 NM_032840 exon2 c.A123T p.R41R CTGATATCGGAAA . 53 13 68 0 . 3 0 3 0 0 OR9K2 441639 broad.mit.edu 37 12 55523835 55523835 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . OR9K2-69 NM_001005243 exon1 c.G283T p.D95Y TTCATTGATCTTT . 13 3 23 0 . 0 0 0 0 0 GRIP1 23426 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 66773061 66773061 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . GRIP1-494 NM_001178074 exon19 c.G2464T p.G822C CTTACCCACTGGC . 152 88 155 0 . 0 0 0 0 0 RAP1B 5908 bcgsc.ca 37 12 69047921 69047921 + Silent SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . RAP1B-1271 NM_001010942 exon5 c.C213T p.Y71Y TTTATACATGAAA . 230 9 285 1 . 40 40 0 0 0 C12orf50 160419 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 88381692 88381692 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . C12orf50-93 NM_152589 exon9 c.C752A p.P251H GTTGTAGGTACTA . 111 6 117 0 . 0 0 0 0 0 AMDHD1 144193 hgsc.bcm.edu 37 12 96337183 96337183 + Missense_Mutation SNP A A G rs7955450 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . AMDHD1-90 NM_152435 exon1 c.A7G p.S3G ATGGCAAGCGGCC . 9 9 0 0 A|0.273;G|0.727 0 0 0 0 0 AMDHD1 144193 hgsc.bcm.edu 37 12 96337225 96337225 + Silent SNP C C T rs1436121 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . AMDHD1-90 NM_152435 exon1 c.C49T p.L17L GTGGTGCTGGTGT . 11 11 0 0 C|0.752;T|0.248 2 0 2 0 0 TMPO 7112 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 98940140 98940140 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TMPO-93 NM_001032283 exon8 c.G994T p.G332X TAGGTGGGAGAAA . 102 31 108 0 . 0 0 0 0 0 UTP20 27340 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 101723173 101723173 + Silent SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . UTP20-155 NM_014503 exon27 c.G3363A p.Q1121Q TTTGCAGATACTG . 123 45 88 0 . 0 0 0 0 0 CHPT1 56994 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 102117036 102117036 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CHPT1-90 NM_020244 exon6 c.G871C p.E291Q GTGTTTGAAAAGC . 79 37 79 0 . 83 18 65 0 0 STAB2 55576 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 104107546 104107546 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . STAB2-104 NM_017564 exon42 c.G4537T p.E1513X TGCCTGGGTAGGT . 120 36 97 0 . 0 0 0 0 0 UBE3B 89910 broad.mit.edu;bcgsc.ca 37 12 109940954 109940954 + Missense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . UBE3B-660 NM_130466 exon14 c.C1409T p.S470L AGACCTCGCTGAC . 125 49 99 2 . 3 0 3 0 0 OAS1 4938 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 113348875 113348875 + Nonsense_Mutation SNP T T G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . OAS1-70 NM_001032409 exon3 c.T489G p.Y163X CGGCTATAAACCT . 202 74 167 0 . 0 0 0 0 0 PIWIL1 9271 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 130830339 130830339 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PIWIL1-92 NM_004764 exon4 c.G232A p.E78K TTAGCAGAGAGAG . 142 51 103 0 . 0 0 0 0 0 TPTE2 93492 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 13 20024411 20024411 + Silent SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TPTE2-92 NM_199254 exon13 c.C876T p.P292P TAGAGTGGGGACA . 249 137 337 0 . 0 0 0 0 0 DCLK1 9201 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 36384973 36384973 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . DCLK1-826 NM_004734 exon12 c.G1687T p.G563X TTTACCCAGTCTC . 40 22 43 0 . 0 0 0 0 0 MED4 29079 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 48655799 48655799 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MED4-187 NM_014166 exon5 c.C490A p.P164T TCAGTGGAGCACA . 58 32 54 0 . 82 8 74 0 0 ATP7B 540 bcgsc.ca 37 13 52509068 52509068 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ATP7B-92 NM_000053 exon21 c.G4222T p.D1408Y ACCTGTCATCCAT . 82 44 101 3 . 1 0 1 0 0 OLFM4 10562 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 53624435 53624435 + Silent SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . OLFM4-69 NM_006418 exon5 c.C1062A p.T354T CCTGACCACCAAC . 210 120 196 0 . 0 0 0 0 0 DIAPH3 81624 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 13 60545177 60545177 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . DIAPH3-516 NM_001042517 exon16 c.C1768G p.P590A GAGGTGGAGGCGG . 93 64 72 0 . 1 0 1 0 0 KLHL1 57626 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 70413106 70413106 + Splice_Site SNP A A T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . KLHL1-90 NM_020866 exon7 c.1414+2T>A . TTAAATACCTTTG . 27 17 39 0 . 0 0 0 0 0 TMCO3 55002 bcgsc.ca 37 13 114154419 114154419 + Silent SNP G G A rs2260159 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TMCO3-90 NM_017905 exon4 c.G771A p.K257K GACCAAGCCCAGA . 147 6 163 2 G|0.796;A|0.204 10 10 0 0 0 UPF3A 65110 broad.mit.edu 37 13 115047559 115047559 + Silent SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . UPF3A-91 NM_080687 exon2 c.C271T p.L91L CGCCCGCTGCCAG . 51 4 17 0 . 5 5 0 0 0 POTEM 641455 bcgsc.ca 37 14 20020123 20020123 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_001145442 exon1 c.C98A p.P33H CACCAGGGGAAGC . 902 201 636 4 . 0 0 0 0 0 DCAF11 80344 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 24584856 24584856 + Missense_Mutation SNP A A T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_181357 exon2 c.A53T p.E18V CCTCCGAGGGCTT . 69 20 57 0 . 6 1 5 0 0 FOXG1 2290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 29237443 29237443 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FOXG1-660 NM_005249 exon1 c.C958A p.R320S CACCCCCGCGCCA . 130 46 43 0 . 0 0 0 0 0 LRFN5 145581 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 42356008 42356008 + Missense_Mutation SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . LRFN5-97 NM_152447 exon3 c.C180G p.D60E GGCAGACAATTTT . 93 30 129 1 . 0 0 0 0 0 FANCM 57697 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 45645661 45645661 + Missense_Mutation SNP G G T rs146490925 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FANCM-569 NM_020937 exon14 c.G3704T p.G1235V ATTTAGGATTCTG . 23 7 41 0 G|1.000;T|0.000 0 0 0 0 0 TXNDC16 57544 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 52923853 52923853 + Missense_Mutation SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TXNDC16-22 NM_020784 exon17 c.G1658C p.G553A ACATATCCTTTTA . 61 23 61 0 . 0 0 0 0 0 TXNDC16 57544 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 53004373 53004373 + Silent SNP T T C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TXNDC16-22 NM_020784 exon5 c.A261G p.E87E TATTTCTTCTTTG . 29 5 19 0 . 0 0 0 0 0 DACT1 51339 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 14 59113119 59113119 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . DACT1-291 NM_016651 exon4 c.G1778T p.G593V TCCAGGGGCTGGA . 83 26 52 0 . 0 0 0 0 0 TMEM30B 161291 hgsc.bcm.edu 37 14 61747742 61747742 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TMEM30B-90 NM_001017970 exon1 c.G124T p.A42S GGCCCGCGCAGAA . 33 16 6 0 . 2 2 0 0 0 ZFYVE26 23503 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 68251818 68251818 + Missense_Mutation SNP T T A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ZFYVE26-162 NM_015346 exon19 c.A3481T p.T1161S CAAGGGTGCTGCA . 162 53 124 0 . 2 2 0 0 0 ACTN1 87 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 69349604 69349604 + Missense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ACTN1-514 NM_001102 exon15 c.G1804A p.G602S ATTTGCCATTGAT . 117 32 81 1 . 195 96 99 0 0 TTLL5 23093 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 76349181 76349181 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TTLL5-92 NM_015072 exon30 c.G3676A p.V1226I TCCCTGGTTCCCA . 124 40 77 0 . 36 20 16 0 0 ASB2 51676 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 94420823 94420823 + Silent SNP C C T rs201823942 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ASB2-228 NM_001202429 exon4 c.G318A p.A106A GGGGTCCGCAGGC . 137 53 95 0 C|0.999;T|0.001 0 0 0 0 0 SERPINA12 145264 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 94955965 94955965 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SERPINA12-310 NM_173850 exon5 c.G1045T p.V349L CGCCCACTTTCAG . 182 71 131 1 . 0 0 0 0 0 RTL1 388015 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 101347633 101347633 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . RTL1-46 NM_001134888 exon1 c.G3493T p.E1165X ACAGCTCAGCCAG . 174 62 80 0 . 0 0 0 0 0 CDC42BPB 9578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 103430940 103430940 + Silent SNP C C A rs45512495 byfrequency;alternate_allele TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CDC42BPB-581 NM_006035 exon19 c.G2625T p.A875A CAGCCGCGCGGAC . 147 47 56 0 C|0.998;T|0.002 3 2 1 0 0 CKB 1152 hgsc.bcm.edu 37 14 103988180 103988180 + Silent SNP G G T rs1136165 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CKB-115 NM_001823 exon4 c.C456A p.R152R GATGGCGCGGCGC . 7 7 0 0 G|0.327;T|0.673 24 12 12 0 0 KIF26A 26153 hgsc.bcm.edu 37 14 104644099 104644099 + Silent SNP T T C rs2497297 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . KIF26A-24 NM_015656 exon12 c.T4974C p.S1658S CAGCAGTGGCTAT . 5 5 0 0 T|0.603;C|0.397 0 0 0 0 0 ADSSL1 122622 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 14 105208191 105208191 + Missense_Mutation SNP A A C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ADSSL1-515 NM_199165 exon9 c.A929C p.Y310S GGACCTACCCCTT . 213 70 152 0 . 0 0 0 0 0 OR4N4 283694 broad.mit.edu;bcgsc.ca 37 15 22382673 22382673 + Silent SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . OR4N4-73 NM_001005241 exon1 c.C201A p.A67A CTTGGCCTTCCTG . 329 31 240 0 . 0 0 0 0 0 NDN 4692 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 23931489 23931489 + Silent SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . NDN-90 NM_002487 exon1 c.C876A p.S292S GTATCGGGAGGGC . 26 13 29 0 . 2 2 0 0 0 GABRB3 2562 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 26806226 26806226 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . GABRB3-518 NM_021912 exon8 c.G933T p.M311I GCAGCCCATAAGG . 134 56 122 0 . 0 0 0 0 0 HERC2 8924 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 28422657 28422657 + Splice_Site SNP T T C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . HERC2-234 NM_004667 exon61 c.9164-2A>G . GCCACCTGCAACA . 120 52 93 0 . 0 0 0 0 0 FAM189A1 23359 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 29416896 29416896 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FAM189A1-22 NM_015307 exon10 c.G1297T p.G433W CGCTCCCAGGCAC . 114 57 64 0 . 0 0 0 0 0 FMN1 342184 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 33192240 33192240 + Silent SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FMN1-23 NM_001103184 exon10 c.G2925T p.R975R TTGTCCCCGAGTC . 64 19 50 0 . 0 0 0 0 0 INO80 54617 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 41313297 41313297 + Nonsense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . INO80-72 NM_017553 exon26 c.C3075G p.Y1025X ATTGCAGTAAGAA . 97 35 90 0 . 7 4 3 0 0 FBN1 2200 broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 48714179 48714179 + Nonsense_Mutation SNP C C A rs363811 bycluster;byfrequency;alternate_allele TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FBN1-92 NM_000138 exon61 c.G7540T p.G2514X TAAATCCGGGAGG . 253 117 166 1 C|0.994;T|0.006 13 12 1 0 0 TRPM7 54822 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 50888468 50888468 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TRPM7-392 NM_017672 exon23 c.C3274G p.L1092V CAATAAGAAGATT . 152 52 160 0 . 0 0 0 0 0 TLN2 83660 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 63054564 63054564 + Missense_Mutation SNP A A T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TLN2-573 NM_015059 exon36 c.A4873T p.N1625Y GCCATCAACCCCA . 234 86 106 0 . 1 1 0 0 0 LACTB 114294 hgsc.bcm.edu 37 15 63414083 63414083 + Missense_Mutation SNP A A C rs34317102 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . LACTB-90 NM_171846 exon1 c.A13C p.M5L CGGCTCATGTCAG . 4 4 0 0 A|0.226;C|0.774 0 0 0 0 0 MTFMT 123263 hgsc.bcm.edu 37 15 65321938 65321938 + Missense_Mutation SNP A A G rs2946655 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MTFMT-24 NM_139242 exon1 c.T14C p.V5A CGCCGCACCAACA . 17 8 0 0 A|0.942;G|0.058 4 0 4 0 0 IGDCC4 57722 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 65687496 65687496 + Silent SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . IGDCC4-93 NM_020962 exon8 c.G1512T p.V504V GTAGGCCACCACG . 175 65 104 0 . 0 0 0 0 0 C15orf60 283677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 73766261 73766261 + Missense_Mutation SNP T T A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . C15orf60-46 NM_001042367 exon2 c.T248A p.L83Q CACTACTGGTAGG . 48 10 46 0 . 0 0 0 0 0 TBC1D21 161514 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 74180025 74180025 + Missense_Mutation SNP T T C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TBC1D21-92 NM_153356 exon9 c.T842C p.M281T TGCAGATGGTGCG . 164 41 91 0 . 0 0 0 0 0 CSPG4 1464 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 15 75969502 75969502 + Nonsense_Mutation SNP A A T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CSPG4-229 NM_001897 exon10 c.T5358A p.Y1786X GTGGGCATACACT . 18 4 14 0 . 2 2 0 0 0 ADAMTS7 11173 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 79063945 79063945 + Silent SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ADAMTS7-226 NM_014272 exon15 c.G2358A p.K786K AGGCTCCTTGGTG . 36 13 30 0 . 0 0 0 0 0 TMC3 342125 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 81624991 81624991 + Silent SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TMC3-70 NM_001080532 exon22 c.C3072A p.P1024P CAGAGGGGGCTGT . 276 78 115 0 . 1 1 0 0 0 ZNF592 9640 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 85327349 85327349 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ZNF592-96 NM_014630 exon4 c.G1443C p.K481N AGGCAAGAAGCAA . 93 37 68 1 . 1 1 0 0 0 AGBL1 123624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 86791011 86791011 + Silent SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_152336 exon6 c.G498T p.R166R CCGACGGGGCTTG . 172 58 80 0 . 0 0 0 0 0 FES 2242 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 91436336 91436336 + Silent SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FES-546 NM_002005 exon15 c.G1833A p.L611L GATCCTGAAGCAG . 148 58 77 0 . 0 0 0 0 0 CHD2 1106 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 93499776 93499776 + Missense_Mutation SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CHD2-229 NM_001271 exon16 c.C1897G p.L633V AAAACTCTGATTG . 72 25 52 0 . 0 0 0 0 0 MEF2A 4205 broad.mit.edu 37 15 100252710 100252715 + In_Frame_Del DEL CAGCAG CAGCAG - rs72198683 alternate_allele TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MEF2A-455 NM_005587 exon11 c.1234_1239del p.412_413del GGCTTCCAGCAGC . 91 0 21 0 . 0 0 0 0 0 ADAMTS17 170691 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 100636657 100636657 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ADAMTS17-228 NM_139057 exon15 c.G2041T p.G681W CAGACCCGATGAT . 115 29 70 0 . 0 0 0 0 0 CACNA1H 8912 bcgsc.ca 37 16 1256150 1256150 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CACNA1H-67 NM_021098 exon12 c.C2650A p.R884S GTGCTGCGCACCT . 104 70 23 1 . 0 0 0 0 0 PTX4 390667 hgsc.bcm.edu 37 16 1537601 1537601 + Missense_Mutation SNP A A G rs2667674 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PTX4-90 NM_001013658 exon2 c.T497C p.L166P CCCTCCAGAGCAG . 16 13 1 0 A|0.928;G|0.072 0 0 0 0 0 SRRM2 23524 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 2815642 2815642 + Missense_Mutation SNP C C A rs146437403 alternate_allele TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SRRM2-93 NM_016333 exon11 c.C5113A p.R1705S CTGTCCCGTAGAA . 52 29 75 0 C|1.000;T|0.000 15 0 15 0 0 GTF3C1 2975 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 27523098 27523098 + Silent SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . GTF3C1-94 NM_001520 exon7 c.G1098T p.R366R CATATCCCGCTCG . 236 162 209 1 . 2 0 2 0 0 IRX3 79191 hgsc.bcm.edu 37 16 54318528 54318528 + Missense_Mutation SNP A A G rs1450355 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . IRX3-90 NM_024336 exon2 c.T1265C p.L422P GGGTGCAGGCGGG . 6 6 0 0 T|0.035;G|0.004 4 0 4 0 0 SLC12A3 6559 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 56899349 56899349 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SLC12A3-155 NM_001126108 exon1 c.G202C p.E68Q ACATATGAGCACT . 162 64 105 0 . 0 0 0 0 0 CCDC135 84229 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 57736008 57736008 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CCDC135-90 NM_032269 exon5 c.G665T p.R222L TGACGCGGGAGGT . 263 112 174 0 . 0 0 0 0 0 DDX28 55794 broad.mit.edu;ucsc.edu;mdanderson.org 37 16 68056823 68056823 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . DDX28-226 NM_018380 exon1 c.C283G p.Q95E AGCCTTGAGAGGC . 26 12 11 0 . 9 3 6 0 0 ZFHX3 463 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 72829226 72829226 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ZFHX3-72 NM_006885 exon9 c.7355delC p.P2452fs AGCTCTGGCTTTG . 70 14 48 0 . 0 0 0 0 0 ZFHX3 463 hgsc.bcm.edu 37 16 72829227 72829228 + Frame_Shift_Del DEL GC GC - novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 GC GC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ZFHX3-72 NM_006885 exon9 c.7353_7354del p.2451_2452del GCTCTGGCTTTGG . 70 0 47 0 . 0 0 0 0 0 ZFHX3 463 hgsc.bcm.edu;bcgsc.ca 37 16 72829228 72829228 + Silent SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ZFHX3-72 NM_006885 exon9 c.G7353A p.K2451K CTCTGGCTTTGGT . 68 14 47 0 . 0 0 0 0 0 CDH13 1012 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 83378568 83378568 + Silent SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CDH13-67 NM_001220488 exon7 c.G879T p.R293R CTTTCGGGAAGGC . 116 48 77 0 . 1 0 1 0 0 ADAD2 161931 hgsc.bcm.edu 37 16 84224967 84224967 + Missense_Mutation SNP G G A rs8044695 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ADAD2-68 NM_001145400 exon1 c.G131A p.G44E CCTGGGGGCCCGC . 7 7 0 0 G|0.292;A|0.708 0 0 0 0 0 ZFPM1 161882 hgsc.bcm.edu 37 16 88599659 88599659 + Missense_Mutation SNP G G T rs71395304 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ZFPM1-90 NM_153813 exon10 c.G1293T p.K431N CAGAAAGGCCCTG . 24 15 1 0 G|0.858;T|0.142 6 4 2 0 0 RPL13 6137 hgsc.bcm.edu 37 16 89627671 89627671 + Silent SNP C C T rs174035 bycluster;byfrequency;by1000genomes TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . RPL13-90 NM_001243131 exon3 c.C141T p.A47A CATCGCCCCGCGC . 11 8 0 0 C|0.846;T|0.154 1030 275 754 0 1 C16orf3 750 bcgsc.ca 37 16 90095558 90095558 + Missense_Mutation SNP C C T rs76646627 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . C16orf3-90 NM_001214 exon1 c.G193A p.G65S GGCAGCCTACGGG . 204 14 63 0 C|0.500;T|0.500 0 0 0 0 0 GAS8 2622 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 90099238 90099238 + Missense_Mutation SNP A A T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . GAS8-227 NM_001481 exon4 c.A401T p.Q134L GCATACAGGAGAG . 383 93 190 0 . 11 11 0 0 0 GAS8 2622 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 90099240 90099240 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . GAS8-227 NM_001481 exon4 c.G403T p.E135X ATACAGGAGAGTG . 384 94 184 0 . 11 11 0 0 0 CLUH 23277 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 2601707 2601707 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_015229 exon10 c.G1330T p.A444S AGGCCGCCACGTC . 275 137 175 1 . 4 0 4 0 0 TP53 7157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 7577580 7577580 + Missense_Mutation SNP T T C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TP53-70225 NM_000546 exon7 c.A701G p.Y234C TAGTTGTAGTGGA . 203 94 204 2 . 6 0 6 0 0 RCVRN 5957 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 9801437 9801437 + Missense_Mutation SNP A A T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . RCVRN-90 NM_002903 exon3 c.T578A p.V193E TCCTTCACTTTTT . 115 64 114 0 . 0 0 0 0 0 MYH2 4620 mdanderson.org 37 17 10432658 10432658 + Silent SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MYH2-194 NM_017534 exon25 c.C3258G p.L1086L CTTTTTGAGCTTT . 10 5 30 1 . 0 0 0 0 0 TVP23B 51030 bcgsc.ca 37 17 18702220 18702220 + Silent SNP T T C rs8080471 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_016078 exon5 c.T426C p.A142A ATTTGCTTTTAGT . 117 6 174 0 T|0.313;C|0.687 7 7 0 0 0 KCNJ18 100134444 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 21319469 21319469 + Missense_Mutation SNP A A T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_001194958 exon3 c.A815T p.H272L TCTTGCATGAGAT . 390 89 383 0 . 0 0 0 0 0 TAOK1 57551 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 27807461 27807461 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TAOK1-521 NM_025142 exon7 c.G525T p.M175I TTCCATGGCATCA . 66 37 103 1 . 1 0 1 0 0 NF1 4763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 29560226 29560226 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . NF1-3353 NM_000267 exon27 c.C3703T p.Q1235X TGTTCTCAGTGGG . 100 66 93 0 . 0 0 0 0 0 SLFN14 342618 broad.mit.edu;bcgsc.ca 37 17 33881631 33881631 + Missense_Mutation SNP T T C rs321612 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SLFN14-1 NM_001129820 exon2 c.A1153G p.K385E TAAATTTGTGGAC . 74 5 99 1 C|0.651;N|0.000 0 0 0 0 0 PSMC5 5705 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 61905533 61905533 + Silent SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PSMC5-178 NM_002805 exon2 c.C60A p.L20L CGGACTCCGCCAA . 125 97 81 0 . 136 5 131 0 0 SPHK1 8877 hgsc.bcm.edu 37 17 74381720 74381720 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SPHK1-1107 NM_182965 exon2 c.G253A p.E85K CGGGTCGAGGTTA . 14 8 4 0 . 2 2 0 0 0 P4HB 5034 hgsc.bcm.edu 37 17 79818287 79818287 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . P4HB-46 NM_000918 exon1 c.G61T p.E21X CCTCCTCGGGGGC . 48 22 5 0 . 97 83 14 0 0 ASXL3 80816 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 18 31158619 31158619 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ASXL3-49 NM_030632 exon1 c.G24T p.K8N GAAGAAGGACCGC . 105 61 43 0 . 0 0 0 0 0 SETBP1 26040 mdanderson.org 37 18 42530098 42530098 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SETBP1-155 NM_015559 exon4 c.G793T p.G265C GCCCAGGGTAAGA . 14 9 24 1 . 0 0 0 0 0 SETBP1 26040 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 42531994 42531994 + Missense_Mutation SNP T T A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SETBP1-155 NM_015559 exon4 c.T2689A p.C897S GATTTCTGCTCCC . 47 26 72 0 . 0 0 0 0 0 SETBP1 26040 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 42532100 42532100 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SETBP1-155 NM_015559 exon4 c.G2795T p.S932I ACGAAAGCCTCAA . 18 10 64 0 . 0 0 0 0 0 SERPINB11 89778 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 61390440 61390440 + RNA SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SERPINB11-67 . . . . ATTTATCAAAAGC . 125 70 174 1 . 0 0 0 0 0 ODF3L2 284451 hgsc.bcm.edu 37 19 464080 464080 + Missense_Mutation SNP C C T rs76592524 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ODF3L2-68 NM_182577 exon4 c.G634A p.A212T TGTTTGCGTCCGG . 7 5 0 0 C|0.969;T|0.031 0 0 0 0 0 GRIN3B 116444 broad.mit.edu 37 19 1008889 1008889 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . GRIN3B-90 NM_138690 exon8 c.G2665T p.E889X CCACCAGAGGGGT . 118 4 77 0 . 2 2 0 0 0 STK11 6794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 1220640 1220640 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . STK11-5227 NM_000455 exon5 c.C658T p.Q220X GCTTTCCAGCCGC . 73 48 28 0 . 14 8 6 0 0 ADAT3 113179 hgsc.bcm.edu 37 19 1912163 1912163 + Silent SNP G G A rs199915192 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ADAT3-154 NM_138422 exon2 c.G117A p.P39P TGAGCCGGCGCCG . 27 22 1 0 G|0.996;A|0.004 0 0 0 0 0 S1PR4 8698 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 3179663 3179663 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . S1PR4-591 NM_003775 exon1 c.G873T p.W291C GGACTGGATCCTG . 121 68 103 0 . 3 3 0 0 0 MUC16 94025 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 9059570 9059570 + Missense_Mutation SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MUC16-566 NM_024690 exon3 c.G27876C p.E9292D GCTGGTCTCCATC . 78 39 120 1 . 0 0 0 0 0 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 9060440 9060440 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MUC16-566 NM_024690 exon3 c.27006delC p.P9002fs TGGTGTGGGGGTC . 135 73 169 0 . 0 0 0 0 0 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 9071377 9071377 + Missense_Mutation SNP T T A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MUC16-566 NM_024690 exon3 c.A16069T p.S5357C GGATGCTCTGTGG . 158 101 191 0 . 0 0 0 0 0 MUC16 94025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 9080534 9080534 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MUC16-566 NM_024690 exon2 c.C9497A p.T3166N ATGGTGGTCACTA . 124 74 123 0 . 0 0 0 0 0 EMR3 84658 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 14749012 14749012 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . EMR3-528 NM_032571 exon11 c.G1389T p.M463I CCACTTCATGAGT . 220 15 274 0 . 0 0 0 0 0 CPAMD8 27151 bcgsc.ca 37 19 17108135 17108135 + Missense_Mutation SNP C C T rs3745340 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CPAMD8-141 NM_015692 exon11 c.G1022A p.R341Q AAGTCCCGGGAGC . 329 11 318 2 C|0.647;T|0.353 0 0 0 0 0 SLC27A1 376497 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 17598000 17598000 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SLC27A1-226 NM_198580 exon3 c.G580T p.G194W GTGAGCGGGCATC . 48 38 38 0 . 0 0 0 0 0 SLC5A5 6528 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 19 17994715 17994715 + Silent SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SLC5A5-93 NM_000453 exon12 c.C1386A p.G462G CTTGGGCGCCACG . 44 27 10 0 . 0 0 0 0 0 ZNF536 9745 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 19 30935331 30935331 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ZNF536-144 NM_014717 exon2 c.G862T p.E288X CGCGAGGAGCTGG . 55 26 17 0 . 0 0 0 0 0 PDCD5 9141 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 33078192 33078192 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PDCD5-228 NM_004708 exon6 c.G364C p.D122H GATGAAGATGACG . 317 150 304 1 . 348 183 165 0 0 HAUS5 23354 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 36110596 36110596 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . HAUS5-68 NM_015302 exon15 c.G1342A p.E448K TGTCTGGAGGAGG . 235 68 145 0 . 5 2 3 0 0 LRFN3 79414 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 36435463 36435463 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . LRFN3-90 NM_024509 exon3 c.G1429A p.E477K CCGGCGGAGAGCC . 78 26 18 0 . 5 3 2 0 0 ZNF567 163081 broad.mit.edu;bcgsc.ca 37 19 37211001 37211001 + Missense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ZNF567-90 NM_152603 exon4 c.C1282T p.R428C TCCTTCCGCCAGA . 126 6 85 0 . 5 5 0 0 0 ZNF383 163087 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 37734341 37734341 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ZNF383-92 NM_152604 exon5 c.G1203T p.K401N TGGGAAGGCCTTT . 55 25 74 0 . 8 3 5 0 0 ZNF793 390927 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 38027960 38027960 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ZNF793-68 NM_001013659 exon8 c.C400T p.Q134X TCAATCCAGAGCC . 39 16 73 0 . 0 0 0 0 0 RYR1 6261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 39019290 39019290 + Silent SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . RYR1-100 NM_000540 exon75 c.G10989A p.L3663L GATCCTGACTGAA . 483 153 358 0 . 0 0 0 0 0 RYR1 6261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 39038919 39038919 + Silent SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . RYR1-100 NM_000540 exon89 c.C12141A p.L4047L CATGCTCGTGGAA . 398 153 261 1 . 0 0 0 0 0 PRX 57716 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 40901699 40901699 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PRX-92 NM_181882 exon7 c.C2560G p.L854V AAGGCAGAGTGAG . 82 28 69 0 . 0 0 0 0 0 GRIK5 2901 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 42507538 42507538 + Silent SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . GRIK5-90 NM_002088 exon18 c.C2460T p.F820F CGCCACGAAGACA . 215 13 99 0 . 0 0 0 0 0 CBLC 23624 hgsc.bcm.edu 37 19 45281452 45281452 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CBLC-849 NM_001130852 exon1 c.G264T p.E88D TCTGGAGGCCAAG . 39 4 14 0 . 0 0 0 0 0 APOE 348 hgsc.bcm.edu 37 19 45411941 45411941 + Missense_Mutation SNP T T C rs429358 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . APOE-90 NM_000041 exon4 c.T388C p.C130R GACGTGTGCGGCC . 33 12 1 0 T|0.861;C|0.139 135 70 65 0 0 DHX34 9704 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 19 47878770 47878770 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . DHX34-231 NM_014681 exon10 c.G2112T p.Q704H CGCGCAGGTAGGG . 26 10 11 0 . 10 7 3 0 0 GLTSCR2 29997 hgsc.bcm.edu 37 19 48258037 48258037 + Silent SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . GLTSCR2-514 NM_015710 exon8 c.C942T p.G314G CCAGGGCGAGGGG . 45 18 3 0 . 285 141 143 1 0 GLTSCR2 29997 hgsc.bcm.edu 37 19 48258717 48258717 + Missense_Mutation SNP A A G rs1804994 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . GLTSCR2-514 NM_015710 exon9 c.A1166G p.Q389R GGCGGCAGAGGCG . 4 4 0 0 A|0.308;G|0.692 4 0 4 0 0 LMTK3 114783 hgsc.bcm.edu 37 19 48994785 48994785 + Silent SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . LMTK3-1357 NM_001080434 exon14 c.C4191A p.T1397T CTCGTTGGTTGGC . 46 4 25 0 . 0 0 0 0 0 SPHK2 56848 hgsc.bcm.edu 37 19 49132867 49132867 + Missense_Mutation SNP G G C rs61751862 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SPHK2-658 NM_020126 exon7 c.G1802C p.G601A AGCTGGGCTACGC . 135 62 1 0 G|0.994;C|0.006 10 3 7 0 0 POLD1 5424 mdanderson.org 37 19 50905080 50905080 + Missense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . POLD1-840 NM_002691 exon4 c.C362T p.S121F GCGGCTCCGTGCC . 88 40 25 1 . 5 1 4 0 0 POLD1 5424 broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 50918779 50918779 + Silent SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . POLD1-840 NM_002691 exon21 c.C2649T p.I883I GGTCATCACCAAG . 445 142 157 1 . 44 24 20 0 0 FPR1 2357 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 52249798 52249798 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FPR1-524 NM_001193306 exon3 c.G450T p.W150C CATCACCCAGGGC . 242 93 197 0 . 10 8 2 0 0 VN1R2 317701 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 53762456 53762456 + Silent SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . VN1R2-90 NM_173856 exon1 c.C828T p.L276L GGGGCTCATGCTC . 181 63 138 2 . 0 0 0 0 0 ZNF845 91664 ucsc.edu 37 19 53856702 53856702 + Missense_Mutation SNP G G A rs200114728 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_138374 exon4 c.G2774A p.R925H CCTTCCGTCACAA . 167 33 157 18 . 2 2 0 0 0 ZNF845 91664 ucsc.edu 37 19 53856730 53856730 + Silent SNP G G A rs201351032 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_138374 exon4 c.G2802A p.K934K TCATAAGACAATT . 176 33 165 18 . 0 0 0 0 0 LILRB5 10990 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 54756391 54756391 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . LILRB5-92 NM_001081442 exon10 c.G1496T p.G499V GCAGCCCCTGCAG . 55 32 39 0 . 19 19 0 0 0 KIR3DX1 90011 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 55054617 55054617 + RNA SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . KIR3DX1-91 . . . . ACGGAAGGCCAAC . 213 66 155 0 . 0 0 0 0 0 PPP1R12C 54776 hgsc.bcm.edu 37 19 55628609 55628609 + Silent SNP A A G rs66707428 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PPP1R12C-227 NM_017607 exon1 c.T303C p.G101G GCTGATACCGTCG . 14 5 0 0 A|0.808;G|0.192 3 2 1 0 0 ZNF628 89887 hgsc.bcm.edu;broad.mit.edu 37 19 55993021 55993021 + Missense_Mutation SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ZNF628-22 NM_033113 exon3 c.C461G p.P154R ACTGCCCCAAGGC . 200 23 25 0 . 1 1 0 0 0 ZNF628 89887 hgsc.bcm.edu 37 19 55993436 55993436 + Missense_Mutation SNP G G T rs147110934 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ZNF628-22 NM_033113 exon3 c.G876T p.E292D GGTGGAGCTGGTG . 25 18 3 0 G|0.978;T|0.022 0 0 0 0 0 RFPL4A 342931 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 19 56274485 56274485 + Missense_Mutation SNP T T C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . RFPL4A-68 NM_001145014 exon3 c.T808C p.C270R AGTATCTGTTCTG . 282 36 223 0 . 0 0 0 0 0 NLRP8 126205 broad.mit.edu;bcgsc.ca 37 19 56467088 56467088 + Missense_Mutation SNP T T A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . NLRP8-361 NM_176811 exon3 c.T1664A p.M555K CTCACATGGGACT . 55 24 52 1 . 0 0 0 0 0 NLRP5 126206 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 56511131 56511131 + Missense_Mutation SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . NLRP5-162 NM_153447 exon1 c.C40G p.L14V GCTGCTCTGCTCT . 104 41 77 0 . 0 0 0 0 0 ZNF787 126208 hgsc.bcm.edu 37 19 56599438 56599440 + In_Frame_Del DEL TCG TCG - novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 TCG TCG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ZNF787-69 NM_001002836 exon3 c.1101_1103del p.367_368del GCGGCCTCGTCGT . 11 11 0 0 . 0 0 0 0 0 ZNF548 147694 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 19 57911240 57911240 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ZNF548-67 NM_001172773 exon4 c.G1621T p.E541X ACAATGGAGAAAG . 28 14 27 0 . 8 5 3 0 0 TPO 7173 hgsc.bcm.edu 37 2 1481231 1481231 + Missense_Mutation SNP G G C rs2175977 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TPO-332 NM_175719 exon8 c.G1193C p.S398T GCGCCAGCGAGGT . 8 8 0 0 G|0.301;C|0.699 0 0 0 0 0 PXDN 7837 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 1652055 1652055 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PXDN-166 NM_012293 exon17 c.G3497T p.G1166V GGGATCCCGTGGT . 192 91 104 0 . 1 0 1 0 0 APOB 338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 21231248 21231248 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . APOB-175 NM_000384 exon26 c.C8492A p.S2831Y TTGCTGGAGAACT . 66 29 46 0 . 0 0 0 0 0 FAM98A 25940 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 33811716 33811716 + Silent SNP T T A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FAM98A-91 NM_015475 exon6 c.A633T p.I211I ATTGGCTATGGCT . 44 17 40 0 . 5 4 1 0 0 MSH2 4436 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 47641427 47641427 + Missense_Mutation SNP C C T rs139891783 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MSH2-2445 NM_000251 exon5 c.C812T p.S271F CACTGTCTGCGGT . 45 22 83 0 . 12 4 8 0 0 SPTBN1 6711 broad.mit.edu;mdanderson.org 37 2 54858733 54858733 + Silent SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SPTBN1-140 NM_003128 exon16 c.C3549G p.A1183A CGAAGCCTTTCTT . 61 21 49 0 . 0 0 0 0 0 UGP2 7360 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 64111157 64111157 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . UGP2-90 NM_006759 exon5 c.G505A p.E169K ACGGATGAAGATA . 47 18 78 0 . 34 19 15 0 0 CLEC4F 165530 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 71039579 71039579 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CLEC4F-95 NM_173535 exon5 c.G1539T p.Q513H TCTGACCTGCTCC . 162 55 135 0 . 0 0 0 0 0 TBC1D8 11138 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 101656658 101656658 + Silent SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TBC1D8-25 NM_001102426 exon6 c.C1017T p.I339I CAGGATGATCTTA . 220 68 132 0 . 2 0 2 0 0 IL18R1 8809 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 102998142 102998142 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . IL18R1-93 NM_003855 exon5 c.G688A p.G230R GAATTAGGTATAT . 77 28 94 0 . 0 0 0 0 0 SULT1C3 442038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 108872131 108872131 + Missense_Mutation SNP A A T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SULT1C3-91 NM_001008743 exon4 c.A503T p.Y168F AATTTTATGAGAA . 99 18 79 0 . 0 0 0 0 0 SOWAHC 65124 hgsc.bcm.edu 37 2 110372192 110372192 + Silent SNP A A G rs6594048 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_023016 exon1 c.A126G p.L42L CGCCCTAGGCGGC . 6 6 0 0 A|0.029;G|0.971 0 0 0 0 0 IL1RN 3557 ucsc.edu;bcgsc.ca 37 2 113887216 113887216 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . IL1RN-92 NM_173841 exon4 c.G189T p.L63F ATACTTGCAAGGA . 402 134 268 4 . 1 1 0 0 0 MARCO 8685 hgsc.bcm.edu;bcgsc.ca 37 2 119731955 119731955 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MARCO-95 NM_006770 exon5 c.507delC p.G169fs CCCTGGCCCGCCG . 71 27 76 1 . 0 0 0 0 0 C1QL2 165257 hgsc.bcm.edu;broad.mit.edu 37 2 119915573 119915573 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . C1QL2-91 NM_182528 exon1 c.273delG p.G91fs AGGGGGCCCCCGC . 22 11 6 0 . 0 0 0 0 0 CNTNAP5 129684 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 125262066 125262066 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CNTNAP5-524 NM_130773 exon8 c.C1257A p.S419R GCTGAGCCTGGAG . 172 71 127 1 . 0 0 0 0 0 CNTNAP5 129684 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 125547619 125547619 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CNTNAP5-524 NM_130773 exon18 c.G2890T p.G964C AGCTACGGCAGCA . 304 100 204 1 . 0 0 0 0 0 CNTNAP5 129684 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 125660460 125660460 + Silent SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CNTNAP5-524 NM_130773 exon22 c.G3435A p.E1145E TGCAGAGAATCTT . 85 32 71 0 . 0 0 0 0 0 POTEF 728378 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 130877801 130877801 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . POTEF-27 NM_001099771 exon3 c.C288A p.N96K CATCTTGTTCCTG . 536 67 343 1 . 0 0 0 0 0 IMP4 92856 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 131103419 131103419 + Missense_Mutation SNP G G T rs200939050 alternate_allele TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . IMP4-90 NM_033416 exon6 c.G507T p.M169I GGTCATGCGGCAT . 134 55 79 0 . 89 50 39 0 0 MIR663B 100313824 bcgsc.ca 37 2 133014602 133014602 + RNA SNP G G C rs75245503 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . . . . . CAGACAGGAGGGA . 144 40 30 2 G|0.500;C|0.500 0 0 0 0 0 MIR663B 100313824 bcgsc.ca 37 2 133014612 133014612 + RNA SNP A A C rs74853538 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . . . . . GGAGGTACCGCAG . 171 53 34 2 A|0.333;C|0.667 0 0 0 0 0 RAB3GAP1 22930 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 135922249 135922249 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . RAB3GAP1-92 NM_001172435 exon23 c.2692delT p.F898fs AAGCTGTTTGTGA . 135 17 84 0 . 0 0 0 0 0 ZEB2 9839 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 145153988 145153988 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ZEB2-297 NM_014795 exon9 c.G3058T p.E1020X TGTGTTCGTATTT . 315 88 199 0 . 0 0 0 0 0 ACVR1 90 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 158626945 158626945 + Missense_Mutation SNP T T A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ACVR1-980 NM_001105 exon7 c.A725T p.E242V GACTTCTCATCAC . 161 53 99 0 . 4 3 1 0 0 SCN2A 6326 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 166152582 166152582 + Silent SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SCN2A-142 NM_001040143 exon1 c.C249A p.P83P GGACCCCTACTAT . 157 62 146 0 . 0 0 0 0 0 SESTD1 91404 bcgsc.ca 37 2 179979930 179979930 + Silent SNP T T C rs2289993 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SESTD1-228 NM_178123 exon16 c.A1701G p.Q567Q CAAAGATTGGCAT . 151 5 92 1 T|0.810;C|0.190 10 10 0 0 0 ITGA4 3676 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 182374441 182374441 + Silent SNP T T A rs201546110 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ITGA4-230 NM_000885 exon16 c.T1752A p.G584G CCTTGGTCCTCAT . 81 14 76 1 . 3 2 1 0 0 PDE1A 5136 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 183088596 183088596 + Silent SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PDE1A-93 NM_001258312 exon8 c.G831A p.Q277Q CCTTGTCTGAATG . 118 34 126 0 . 0 0 0 0 0 PDE1A 5136 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 183088641 183088641 + Missense_Mutation SNP A A C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PDE1A-93 NM_001258312 exon8 c.T786G p.I262M ATCATGAATGGCA . 190 59 172 1 . 0 0 0 0 0 SF3B1 23451 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 198257760 198257760 + Missense_Mutation SNP A A G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SF3B1-140 NM_012433 exon24 c.T3692C p.M1231T GCTCCCATAACTG . 279 96 261 1 . 362 199 163 0 0 NBEAL1 65065 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 203972654 203972654 + Silent SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . NBEAL1-92 NM_001114132 exon13 c.G1605A p.L535L ATTGCTGAGAGTG . 109 34 77 0 . 0 0 0 0 0 NBEAL1 65065 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 204075696 204075696 + Missense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . NBEAL1-92 NM_001114132 exon53 c.C7714T p.H2572Y GCATTACATCTGT . 70 13 113 1 . 1 1 0 0 0 CRYGA 1418 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 209028275 209028275 + Silent SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CRYGA-90 NM_014617 exon1 c.G6T p.G2G CACCTTCCCCATG . 317 129 203 1 . 0 0 0 0 0 CPS1 1373 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 211456582 211456582 + Silent SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CPS1-162 NM_001122633 exon11 c.C993T p.I331I GAATATCACAAAC . 56 21 31 0 . 0 0 0 0 0 PECR 55825 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 216930060 216930060 + Silent SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PECR-90 NM_018441 exon3 c.G399T p.T133T GGTACCCGTCAGG . 160 51 110 0 . 27 13 14 0 0 SPEG 10290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 220332029 220332029 + Silent SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SPEG-383 NM_005876 exon10 c.C3015T p.G1005G CCGTGGCCGCCTG . 105 34 47 0 . 0 0 0 0 0 CUL3 8452 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 225379488 225379488 + Missense_Mutation SNP T T A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CUL3-229 NM_001257198 exon4 c.A398T p.D133V ACACGGTCCTACA . 128 48 107 0 . 0 0 0 0 0 NYAP2 57624 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 226447396 226447396 + Nonsense_Mutation SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_020864 exon4 c.C1263G p.Y421X GCTGTACCGAACC . 210 65 97 0 . 0 0 0 0 0 SPHKAP 80309 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 228883966 228883966 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SPHKAP-167 NM_030623 exon7 c.C1604A p.A535E TGCAGTGCACCAC . 60 17 41 0 . 0 0 0 0 0 TRPM8 79054 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 234878408 234878408 + Missense_Mutation SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TRPM8-94 NM_024080 exon16 c.C2095G p.L699V CTGTGTCTGTTTA . 257 106 230 0 . 0 0 0 0 0 CPXM1 56265 hgsc.bcm.edu 37 20 2781078 2781078 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CPXM1-94 NM_001184699 exon1 c.C141A p.S47R TGCCGGGCTGCTA . 38 27 4 0 . 2 0 2 0 0 LZTS3 0 hgsc.bcm.edu 37 20 3145553 3145553 + Silent SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_014731 exon3 c.C1569T p.P523P GTCCACGGGGGTC . 13 9 0 0 . 1 0 1 0 0 PLCB4 5332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 9360778 9360778 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PLCB4-274 NM_182797 exon11 c.G822T p.M274I TGAGATGTATGAA . 223 67 251 0 . 0 0 0 0 0 NCOA6 23054 broad.mit.edu 37 20 33345744 33345744 + Silent SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . NCOA6-292 NM_014071 exon7 c.G807A p.Q269Q CTGCTGCTGTTGT . 85 4 63 3 . 0 0 0 0 0 CEP250 11190 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 34063418 34063418 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CEP250-27 NM_007186 exon15 c.G1663T p.E555X CACCTGGAAGGGG . 146 58 101 0 . 0 0 0 0 0 ACTR5 79913 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 37383613 37383613 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ACTR5-90 NM_024855 exon4 c.G789T p.W263C CAAATGGCGGTGT . 193 60 213 1 . 5 1 4 0 0 WISP2 8839 hgsc.bcm.edu 37 20 43348735 43348735 + Silent SNP C C A rs2296530 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . WISP2-130 NM_003881 exon2 c.C258A p.G86G CGGTGGCCGGGGG . 7 4 0 0 C|0.615;A|0.385 0 0 0 0 0 SEMG2 6407 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 43850726 43850726 + Silent SNP T T A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SEMG2-91 NM_003008 exon2 c.T453A p.S151S CCCATCTGGAAAG . 264 104 238 0 . 0 0 0 0 0 ARFGEF2 10564 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 47630130 47630130 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ARFGEF2-358 NM_006420 exon29 c.G3948A p.M1316I TGACATGAATGTA . 151 50 89 0 . 1 1 0 0 0 KCNB1 3745 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 47990374 47990374 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . KCNB1-92 NM_004975 exon2 c.C1723G p.R575G CTGTGCGAGTGGG . 117 34 96 0 . 0 0 0 0 0 TSHZ2 128553 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 51872153 51872153 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TSHZ2-232 NM_173485 exon2 c.C2156A p.S719Y CCTGCTCCAGCCC . 163 55 72 0 . 0 0 0 0 0 MC3R 4159 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 54824215 54824215 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MC3R-660 NM_019888 exon1 c.C316A p.L106M GACTACCTGACCT . 492 178 281 0 . 0 0 0 0 0 GNAS 2778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 57430199 57430199 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . GNAS-4767 NM_080425 exon1 c.C1879T p.Q627X AGTCCCCAGCCCA . 112 34 108 0 . 0 0 0 0 0 ZNF831 128611 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 57768876 57768876 + Missense_Mutation SNP T T A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ZNF831-126 NM_178457 exon1 c.T2802A p.D934E GGCAGATAATGCC . 60 20 49 0 . 0 0 0 0 0 HELZ2 85441 hgsc.bcm.edu 37 20 62194713 62194713 + Missense_Mutation SNP A A C rs3810486 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_001037335 exon9 c.T5462G p.L1821R ACGGCCAGGGTGT . 16 10 2 0 A|0.739;C|0.261 2 2 0 0 0 GRIK1 2897 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 30959761 30959761 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . GRIK1-137 NM_000830 exon12 c.C1718A p.P573H GACAGGGGGTTGA . 221 72 159 0 . 0 0 0 0 0 KRTAP24-1 643803 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 31654682 31654682 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . KRTAP24-1-68 NM_001085455 exon1 c.C569A p.P190Q CATAATGGTGAGA . 143 60 132 0 . 0 0 0 0 0 ERG 2078 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 39817408 39817408 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ERG-848 NM_004449 exon4 c.C176G p.P59R TGCTGAGGGACGC . 342 120 238 0 . 2 2 0 0 0 DNMT3L 29947 broad.mit.edu;bcgsc.ca 37 21 45676028 45676028 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . DNMT3L-228 NM_013369 exon7 c.C526A p.L176I TCTCAAGGGGATT . 261 29 284 2 . 0 0 0 0 0 KRTAP10-8 386681 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 21 46032129 46032129 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . KRTAP10-8-153 NM_198695 exon1 c.G112A p.G38S TGCACTGGCTCCT . 140 48 57 0 . 0 0 0 0 0 TBX1 6899 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 19752531 19752531 + Silent SNP T T C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TBX1-154 NM_080647 exon6 c.T735C p.Y245Y GGTCTATGTGGAC . 147 97 170 0 . 1 0 1 0 0 SGSM1 129049 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 25240890 25240890 + Silent SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SGSM1-27 NM_001098497 exon3 c.G90A p.V30V GGCTGTGACACGC . 145 102 103 0 . 0 0 0 0 0 SEZ6L 23544 hgsc.bcm.edu 37 22 26689105 26689105 + Silent SNP G G A rs17395296 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SEZ6L-95 NM_021115 exon2 c.G828A p.Q276Q CGAGCAGGCACCA . 4 4 2 0 G|0.931;A|0.069 0 0 0 0 0 SFI1 9814 hgsc.bcm.edu;bcgsc.ca 37 22 31904328 31904328 + Missense_Mutation SNP A A G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SFI1-90 NM_001258327 exon2 c.A58G p.I20V AAAGTGATTAAGC . 48 4 64 0 . 0 0 0 0 0 MICALL1 85377 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 38323452 38323452 + Silent SNP G G A rs201808090 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MICALL1-153 NM_033386 exon9 c.G1500A p.P500P GGAGCCGCCCTCG . 44 29 18 0 . 5 0 5 0 0 SOX10 6663 broad.mit.edu;bcgsc.ca 37 22 38379397 38379397 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SOX10-650 NM_006941 exon2 c.C395T p.A132V AGCTCAGCGTTGT . 346 249 60 2 . 0 0 0 0 0 EP300 2033 bcgsc.ca 37 22 41568590 41568590 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . EP300-2011 NM_001429 exon28 c.G4540A p.E1514K GTTCTGGAAGAAA . 165 116 175 4 . 8 0 8 0 0 SBF1 6305 ucsc.edu;bcgsc.ca 37 22 50901135 50901135 + Silent SNP C C A rs143643893 by1000genomes;alternate_allele TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SBF1-90 NM_002972 exon18 c.G1980T p.P660P CACCCCCGGGCTC . 195 141 123 1 C|0.994;T|0.006 0 0 0 0 0 ANKRD28 23243 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 15778712 15778712 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ANKRD28-135 NM_015199 exon5 c.C290G p.S97C TCTGCAGAATGCT . 46 24 68 0 . 3 0 3 0 0 GOLGA4 2803 hgsc.bcm.edu 37 3 37336491 37336491 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . GOLGA4-93 NM_001172713 exon7 c.G670T p.A224S CAGCAGGCAAAGA . 81 6 123 0 . 0 0 0 0 0 HHATL 57467 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 42739085 42739085 + Silent SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . HHATL-93 NM_020707 exon7 c.C780A p.A260A GTCGACGGCCATG . 230 122 214 0 . 0 0 0 0 0 BSN 8927 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 49692898 49692898 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . BSN-97 NM_003458 exon5 c.G5909T p.R1970M AGCAGAGGCCCTA . 18 10 30 0 . 0 0 0 0 0 RBM15B 29890 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 51430916 51430916 + Nonsense_Mutation SNP A A T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . RBM15B-90 NM_013286 exon1 c.A2086T p.K696X GAGCCCAAGCCTC . 206 123 222 0 . 46 5 41 0 0 DNAH1 25981 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 52430932 52430932 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . DNAH1-67 NM_015512 exon73 c.G11659T p.D3887Y GTCACTGATGACT . 114 68 150 1 . 2 1 1 0 0 ARHGEF3 50650 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 56992915 56992915 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ARHGEF3-228 NM_001128615 exon3 c.C65G p.P22R CGTTTAGGCCTAG . 130 78 125 0 . 0 0 0 0 0 PSMD6 9861 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 64008128 64008128 + Missense_Mutation SNP T T A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PSMD6-91 NM_001271779 exon3 c.A376T p.M126L TCTTCATTTTATT . 149 81 171 2 . 30 8 22 0 0 ROBO2 6092 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 77666782 77666782 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ROBO2-328 NM_002942 exon22 c.G3412T p.A1138S GGCGTGGCTTCTT . 164 93 148 0 . 0 0 0 0 0 SEMA5B 54437 hgsc.bcm.edu 37 3 122631896 122631896 + Missense_Mutation SNP A A T rs2276782 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SEMA5B-157 NM_001256347 exon18 c.T2681A p.V894D AGGAGGACCTCCA . 9 9 0 0 T|0.412;A|0.588 0 0 0 0 0 P2RY14 9934 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 150931660 150931660 + Missense_Mutation SNP T T C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . P2RY14-563 NM_014879 exon3 c.A445G p.M149V GGAGCATGAGCAT . 168 13 88 0 . 0 0 0 0 0 MUC4 4585 bcgsc.ca 37 3 195511911 195511911 + Silent SNP G G A rs200732241 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MUC4-90 NM_018406 exon2 c.C6540T p.T2180T AGTGTCGGTGACA . 1336 85 586 27 G|0.998;A|0.002 0 0 0 0 0 TNK2 10188 hgsc.bcm.edu 37 3 195594805 195594805 + Silent SNP A A G rs1056749 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TNK2-957 NM_001010938 exon13 c.T2553C p.A851A AGGGGAAGCAGGT . 5 4 1 0 A|0.886;G|0.114 6 1 5 0 0 CRIPAK 285464 hgsc.bcm.edu 37 4 1388974 1388974 + Silent SNP T T C rs71614969 bycluster TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CRIPAK-90 NM_175918 exon1 c.T675C p.D225D TGCCGATGCGGAG . 12 9 1 0 C|1.000;|0.000 5 3 2 0 0 OTOP1 133060 broad.mit.edu 37 4 4228274 4228282 + In_Frame_Del DEL CCACAGCAG CCACAGCAG - rs75328065 alternate_allele TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . OTOP1-92 NM_177998 exon1 c.310_318del p.104_106del CAGCATCCACAGC . 48 21 6 0 . 0 0 0 0 0 OTOP1 133060 hgsc.bcm.edu 37 4 4228456 4228456 + Silent SNP G G T rs73191872 bycluster;by1000genomes TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . OTOP1-92 NM_177998 exon1 c.C136A p.R46R CGCCCCGCCGGGG . 44 22 2 0 . 0 0 0 0 0 GPR78 27201 hgsc.bcm.edu 37 4 8583231 8583231 + Silent SNP C C A rs61741008 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . GPR78-516 NM_080819 exon1 c.C522A p.A174A CACCGCCACGCTC . 17 6 1 0 C|0.992;A|0.008 0 0 0 0 0 FAM200B 285550 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 15689683 15689683 + Silent SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_001145191 exon2 c.G1083A p.L361L CTCATTGAATAGC . 47 23 105 0 . 0 0 0 0 0 KCNIP4 80333 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 20884247 20884247 + Silent SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . KCNIP4-91 NM_025221 exon1 c.G87T p.S29S AGGAGACGACGTT . 34 18 50 0 . 0 0 0 0 0 GABRA2 2555 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 46252425 46252425 + Missense_Mutation SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . GABRA2-94 NM_000807 exon10 c.G1256C p.R419T GACATTCTGTCAA . 58 31 80 0 . 0 0 0 0 0 CORIN 10699 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 47765548 47765548 + Silent SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CORIN-91 NM_006587 exon4 c.G465C p.T155T TGTCAGCGTGGCG . 156 85 142 0 . 0 0 0 0 0 TMPRSS11B 132724 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 69094576 69094576 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TMPRSS11B-91 NM_182502 exon9 c.G973T p.D325Y AAAAGTCTTCTTG . 140 76 149 0 . 0 0 0 0 0 UGT2A3 79799 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 69817028 69817028 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . UGT2A3-92 NM_024743 exon1 c.G451T p.V151L GAATCACAGGGTC . 146 72 234 0 . 0 0 0 0 0 DSPP 1834 bcgsc.ca 37 4 88536233 88536238 + In_Frame_Del DEL AGTGAT AGTGAT - rs200486992 alternate_allele TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 AGTGAT - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . DSPP-90 NM_014208 exon5 c.2419_2424del p.807_808del AACAGCAGTGATA . 987 27 968 8 . 0 0 0 0 0 CCSER1 401145 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 91389426 91389426 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_001145065 exon5 c.G1645T p.A549S TGTGCCGCAGTAG . 100 60 153 0 . 0 0 0 0 0 PDHA2 5161 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 96762414 96762414 + Silent SNP A A G rs150761581 byfrequency;alternate_allele TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PDHA2-90 NM_005390 exon1 c.A1113G p.S371S TGATTCATCTTTT . 184 125 172 0 A|0.998;C|0.002 0 0 0 0 0 CENPE 1062 bcgsc.ca 37 4 104082349 104082349 + Silent SNP C C T rs2251634 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CENPE-277 NM_001813 exon20 c.G2025A p.Q675Q CTCCAACTGGCTT . 43 4 69 0 T|0.334;G|0.148 0 0 0 0 0 SEC24B 10427 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 110448529 110448529 + Missense_Mutation SNP T T C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SEC24B-137 NM_006323 exon18 c.T3017C p.L1006P GTTCACTAGCAGA . 69 41 98 0 . 11 0 11 0 0 PITX2 5308 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 111542464 111542464 + Missense_Mutation SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PITX2-650 NM_000325 exon2 c.G267C p.K89N CCGCTTCTTCTTA . 50 23 62 0 . 1 0 1 0 0 ANK2 287 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 114163347 114163347 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ANK2-583 NM_001148 exon9 c.G873T p.Q291H CGGTCAGATCGAT . 142 73 166 0 . 0 0 0 0 0 KIAA1109 84162 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 123268929 123268929 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . KIAA1109-80 NM_015312 exon74 c.G13124A p.R4375Q TTCCTCGAAGAGG . 165 103 119 0 . 0 0 0 0 0 FAT4 79633 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 126238731 126238731 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FAT4-108 NM_024582 exon1 c.G1165T p.A389S TCTCCCGCGGCCA . 275 157 223 0 . 0 0 0 0 0 FSTL5 56884 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 162954783 162954783 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FSTL5-158 NM_020116 exon3 c.G154T p.V52F CTTTGACTCTTGA . 16 9 44 0 . 0 0 0 0 0 ACSL1 2180 broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 185687098 185687098 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ACSL1-92 NM_001995 exon14 c.G1306T p.A436S CCGGGGCGGCTCC . 155 89 158 1 . 0 0 0 0 0 ADCY2 108 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 7802377 7802377 + Missense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ADCY2-97 NM_020546 exon21 c.C2675T p.S892F TTGCCTCCATTCC . 126 42 97 0 . 0 0 0 0 0 C5orf49 134121 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 7832052 7832052 + Missense_Mutation SNP G G A rs202097565 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . C5orf49-22 NM_001089584 exon3 c.C355T p.R119C TGGCACGGCCAAA . 157 51 98 1 . 0 0 0 0 0 PRDM9 56979 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 23527817 23527817 + Missense_Mutation SNP A A T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PRDM9-139 NM_020227 exon11 c.A2620T p.S874C AGGTCAAGCCTCT . 284 115 194 0 . 0 0 0 0 0 OSMR 9180 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 38869147 38869147 + Missense_Mutation SNP A A G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . OSMR-496 NM_001168355 exon2 c.A1G p.M1V GAACTGATGGCTC . 98 25 104 0 . 0 0 0 0 0 FYB 2533 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 39118988 39118988 + Missense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FYB-24 NM_001243093 exon16 c.G2419A p.E807K CTTCTTCATTTCT . 88 15 80 0 . 0 0 0 0 0 ENC1 8507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 73930600 73930600 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ENC1-228 NM_003633 exon2 c.G1711T p.V571F ACGGGACAGTGGT . 413 134 312 0 . 7 6 1 0 0 COL4A3BP 10087 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 74681788 74681788 + Silent SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . COL4A3BP-226 NM_001130105 exon14 c.C1740A p.G580G TGTGACGCCTTTA . 73 24 60 0 . 0 0 0 0 0 FAM81B 153643 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 94764306 94764306 + Splice_Site SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FAM81B-92 NM_152548 exon6 c.657-1G>C . CCATTAGATGTGA . 199 85 161 2 . 0 0 0 0 0 SLCO4C1 353189 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 101576467 101576467 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SLCO4C1-93 NM_180991 exon11 c.C1831T p.R611W GGGACCGTTGTCT . 179 66 206 1 . 0 0 0 0 0 IL3 3562 bcgsc.ca 37 5 131396478 131396478 + Missense_Mutation SNP C C T rs40401 bycluster;byfrequency;by2hit2allele;by1000genomes TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . IL3-92 NM_000588 exon1 c.C79T p.P27S ACAACGCCCTTGA . 251 9 134 0 C|0.616;N|0.000 0 0 0 0 0 PCDHB13 56123 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140595249 140595249 + Silent SNP T T G rs144959109 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PCDHB13-93 NM_018933 exon1 c.T1554G p.S518S CAGGTCTCTGGAC . 548 214 172 2 T|0.999;G|0.001 2 0 2 0 0 PCDHGA3 56112 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140723866 140723866 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PCDHGA3-68 NM_032011 exon1 c.G266T p.R89M CGGAGAGGATAGA . 116 42 122 0 . 0 0 0 0 0 FAT2 2196 ucsc.edu;bcgsc.ca;mdanderson.org 37 5 150946780 150946780 + Silent SNP C C A rs35225143 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FAT2-96 NM_001447 exon1 c.G1713T p.G571G GATAGACCCTGTA . 178 55 142 0 C|0.948;A|0.052 0 0 0 0 0 GLRA1 2741 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 151231112 151231112 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . GLRA1-91 NM_000171 exon7 c.751delT p.Y251fs TCAGGTAGTAACC . 313 130 224 0 . 0 0 0 0 0 HAVCR1 26762 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 156482398 156482398 + Missense_Mutation SNP T T C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . HAVCR1-92 NM_001099414 exon3 c.A193G p.N65D TTCCATTGGTCCA . 235 95 171 1 . 0 0 0 0 0 CDHR2 54825 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 176016115 176016115 + Silent SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CDHR2-70 NM_017675 exon22 c.C2940A p.T980T GGCCACCATCCCT . 191 62 163 0 . 2 0 2 0 0 HK3 3101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 176314086 176314086 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . HK3-294 NM_002115 exon13 c.C1774A p.Q592K TCTGCTGGAAGTC . 266 98 144 0 . 2 2 0 0 0 GRM6 2916 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 178413936 178413936 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . GRM6-588 NM_000843 exon7 c.G1403T p.G468V TACCGCCCGGGCG . 168 67 90 1 . 0 0 0 0 0 ALDH5A1 7915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 24523089 24523089 + Missense_Mutation SNP T T C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ALDH5A1-90 NM_170740 exon8 c.T1148C p.V383A TGCGCGTAGGTAA . 111 35 99 0 . 6 3 3 0 0 HIST1H2BA 255626 bcgsc.ca 37 6 25727448 25727448 + Silent SNP G G A rs16890972 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . HIST1H2BA-204 NM_170610 exon1 c.G312A p.L104L GCTACTGCCGGGA . 152 6 95 0 G|0.965;A|0.035 0 0 0 0 0 HIST1H3A 8350 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 26020915 26020915 + Silent SNP A A G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . HIST1H3A-92 NM_003529 exon1 c.A198G p.L66L TAAACTACCTTTC . 148 56 75 0 . 0 0 0 0 0 HIST1H3F 8968 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 26250440 26250440 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . HIST1H3F-68 NM_021018 exon1 c.C394G p.R132G CTCCGCGAATGCG . 216 82 152 1 . 0 0 0 0 0 HIST1H2BN 8341 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 27806779 27806779 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . HIST1H2BN-68 NM_003520 exon1 c.G340A p.E114K GTGTCGGAGGGCA . 211 74 84 0 . 5 0 5 0 0 ZKSCAN3 80317 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 28331530 28331530 + Missense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ZKSCAN3-92 NM_024493 exon5 c.C695T p.S232L AGGATTCATCTCA . 190 63 149 0 . 1 0 1 0 0 HLA-F 3134 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 29692009 29692009 + Missense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . HLA-F-22 NM_001098478 exon3 c.C394T p.R132C CTCCTCCGCGGGT . 237 81 130 0 . 420 285 135 0 0 PRRC2A 7916 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 31590581 31590581 + Silent SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PRRC2A-156 NM_004638 exon2 c.G15T p.S5S TCGCTCGGGGCCG . 132 48 84 0 . 2 1 1 0 0 TNXB 7148 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 32017977 32017977 + Silent SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TNXB-90 NM_019105 exon27 c.C9231T p.S3077S CATCCAGGACAGG . 309 103 219 0 . 0 0 0 0 0 HLA-DQA1 3117 broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 32610520 32610520 + Silent SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . HLA-DQA1-90 NM_002122 exon4 c.C747A p.S249S TGCTTCCAGACAC . 341 140 179 1 . 57 57 0 0 0 UHRF1BP1 54887 broad.mit.edu;bcgsc.ca 37 6 34838842 34838842 + Silent SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . UHRF1BP1-93 NM_017754 exon18 c.G3930A p.P1310P GATCCCGGTGGTA . 107 45 83 1 . 1 1 0 0 0 KCTD20 222658 bcgsc.ca 37 6 36446975 36446975 + Missense_Mutation SNP G G C rs2239808 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . KCTD20-92 NM_173562 exon4 c.G512C p.S171T GCATCAGTGCAAC . 281 7 182 0 G|0.619;C|0.381 5 5 0 0 0 GUCA1B 2979 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 42156332 42156332 + Silent SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . GUCA1B-92 NM_002098 exon2 c.C345G p.L115L AATGTTGAGTAGC . 117 43 79 1 . 0 0 0 0 0 PEX6 5190 hgsc.bcm.edu 37 6 42946490 42946490 + Silent SNP C C A rs9462858 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PEX6-91 NM_000287 exon1 c.G399T p.V133V TCCGGGCACTGGG . 10 9 0 0 C|0.673;A|0.327 4 0 4 0 0 SLC25A27 9481 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 46623682 46623682 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SLC25A27-90 NM_001204051 exon2 c.G209A p.G70E ATAGGGGAATGGT . 156 72 100 0 . 0 0 0 0 0 CRISP1 167 hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 49806196 49806196 + Silent SNP G G A rs35289289 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CRISP1-90 NM_001205220 exon7 c.C576T p.G192G TGGGACGCCTGTC . 58 24 43 0 G|0.960;A|0.040 0 0 0 0 0 PKHD1 5314 bcgsc.ca 37 6 51512887 51512887 + Silent SNP A A G rs17667728 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PKHD1-603 NM_138694 exon63 c.T11340C p.P3780P CTCTGAAGGAGGT . 97 4 59 0 A|0.960;G|0.040 0 0 0 0 0 PKHD1 5314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 51920477 51920477 + Missense_Mutation SNP A A G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PKHD1-603 NM_170724 exon19 c.T1744C p.F582L CACAGAAGGGCTC . 139 49 63 0 . 0 0 0 0 0 IL17A 3605 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 52052591 52052591 + Missense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . IL17A-90 NM_002190 exon2 c.C218T p.P73L CCTCACCTTGGAA . 161 44 102 0 . 0 0 0 0 0 DST 667 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 56336950 56336950 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . DST-523 NM_015548 exon75 c.G14196T p.R4732S GTTTACCCTAGGA . 235 84 138 0 . 32 11 21 0 0 POU3F2 5454 hgsc.bcm.edu 37 6 99283376 99283376 + Silent SNP T T G rs195860 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . POU3F2-90 NM_005604 exon1 c.T627G p.G209G GGCCGGTCTGCAC . 7 7 0 0 T|0.089;G|0.911 0 0 0 0 0 KPNA5 3841 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 117013269 117013269 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . KPNA5-290 NM_002269 exon3 c.G190C p.E64Q ATGCTTGAAAGTC . 76 42 148 0 . 2 0 2 0 0 CCDC170 80129 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 151936589 151936589 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_025059 exon10 c.G1722T p.L574F AACTTTGGAACAG . 47 18 82 1 . 0 0 0 0 0 SYNE1 23345 broad.mit.edu;bcgsc.ca;mdanderson.org 37 6 152763327 152763327 + Silent SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SYNE1-607 NM_033071 exon31 c.G3912T p.A1304A CGCCTGCGCGATC . 57 39 43 1 . 0 0 0 0 0 WTAP 9589 ucsc.edu;bcgsc.ca 37 6 160169397 160169397 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . WTAP-90 NM_001270533 exon6 c.G448A p.D150N ACGCCTGATAGGT . 176 88 236 3 . 13 5 8 0 0 RPS6KA2 6196 bcgsc.ca 37 6 166862233 166862233 + Silent SNP T T C rs2230730 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . RPS6KA2-1405 NM_001006932 exon15 c.A1335G p.T445T GGTGTCTGTGGCT . 167 6 122 1 T|0.761;C|0.239;A|0.000 0 0 0 0 0 PMS2 5395 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 6022454 6022454 + Splice_Site SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PMS2-1083 NM_000535 exon13 c.2174+1G>A . CACTCACGCTATG . 624 157 506 1 . 1 0 1 0 0 GRID2IP 392862 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 6565891 6565891 + Missense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_001145118 exon4 c.G883A p.G295S CGTGGCCGCGAAG . 87 30 70 0 . 0 0 0 0 0 ETV1 2115 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 13971174 13971174 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ETV1-659 NM_004956 exon9 c.755delC p.P252fs AGAGGAGGGGGAA . 176 58 149 0 . 0 0 0 0 0 ETV1 2115 hgsc.bcm.edu 37 7 13971176 13971177 + Frame_Shift_Del DEL GG GG - novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 GG GG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ETV1-659 NM_004956 exon9 c.752_753del p.251_251del AGGAGGGGGAAAG . 178 0 150 0 . 0 0 0 0 0 ETV1 2115 hgsc.bcm.edu;bcgsc.ca;mdanderson.org 37 7 13971177 13971177 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ETV1-659 NM_004956 exon9 c.C752T p.P251L GGAGGGGGAAAGC . 178 59 149 0 . 0 0 0 0 0 FERD3L 222894 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 19184760 19184760 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FERD3L-153 NM_152898 exon1 c.G226T p.E76X CCTCCTCTTCTCC . 65 22 73 0 . 0 0 0 0 0 CDK13 8621 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 40085455 40085455 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CDK13-548 NM_003718 exon6 c.G2374A p.E792K GTGTTTGAATATA . 53 21 47 0 . 9 5 4 0 0 SUN3 256979 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 48068434 48068434 + Silent SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SUN3-514 NM_152782 exon2 c.C102T p.D34D ATTTTCGTCCTCT . 218 18 176 0 . 0 0 0 0 0 ABCA13 154664 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 48314045 48314045 + Silent SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ABCA13-521 NM_152701 exon17 c.C4782G p.G1594G TGTAGGCAATTCC . 69 28 91 0 . 0 0 0 0 0 IKZF1 10320 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 50444361 50444361 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . IKZF1-1242 NM_006060 exon4 c.G291T p.R97S CCACAGGGACCAA . 197 80 143 0 . 0 0 0 0 0 PCLO 27445 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 82784132 82784132 + Missense_Mutation SNP T T A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PCLO-29 NM_014510 exon2 c.A1825T p.T609S TGCATGTGTTAAA . 272 90 180 0 . 0 0 0 0 0 SEMA3D 223117 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 7 84685101 84685101 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SEMA3D-138 NM_152754 exon7 c.C793A p.R265S ATTCACGAAAGAA . 26 12 45 0 . 0 0 0 0 0 ABCB1 5243 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 87178755 87178755 + Missense_Mutation SNP A A T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ABCB1-582 NM_000927 exon15 c.T1634A p.L545Q CGAACCAGGGCAC . 191 51 123 0 . 0 0 0 0 0 RUNDC3B 154661 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 87400049 87400049 + Missense_Mutation SNP T T A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . RUNDC3B-69 NM_138290 exon8 c.T833A p.L278H ATCAGCTTACCCT . 155 68 123 0 . 0 0 0 0 0 STEAP2 261729 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 89854425 89854425 + Missense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . STEAP2-92 NM_001040665 exon3 c.C29T p.P10L GAAGCCCTAAGAG . 172 54 121 0 . 2 2 0 0 0 FOXP2 93986 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 114268677 114268677 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FOXP2-295 NM_001172767 exon4 c.C416A p.S139Y TCCTGTCTCCTCA . 140 39 98 0 . 0 0 0 0 0 CFTR 1080 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 117232327 117232327 + Silent SNP C C G rs1800102 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CFTR-518 NM_000492 exon14 c.C2106G p.L702L TATTCTCAATCCA . 16 6 30 0 . 0 0 0 0 0 CTTNBP2 83992 hgsc.bcm.edu 37 7 117358169 117358169 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CTTNBP2-94 NM_033427 exon22 c.C4649A p.A1550D GAATCAGCAATCT . 75 4 46 0 . 0 0 0 0 0 FEZF1 389549 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 121942939 121942939 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FEZF1-91 NM_001024613 exon3 c.G983T p.S328I GTGGAACTTCTAT . 89 30 105 0 . 0 0 0 0 0 SLC13A1 6561 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 122759235 122759235 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SLC13A1-92 NM_022444 exon13 c.G1412T p.W471L ATTAGCCATGCTG . 74 28 71 1 . 0 0 0 0 0 POT1 25913 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 124503540 124503540 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . POT1-227 NM_015450 exon8 c.G410T p.R137L CAAACACGTAAGG . 267 96 191 0 . 1 0 1 0 0 BRAF 673 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 140453154 140453154 + Missense_Mutation SNP T T C rs121913338 bycluster TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . BRAF-92146 NM_004333 exon15 c.A1781G p.D594G CCAAAATCACCTA . 77 25 54 0 . 1 0 1 0 0 CLEC5A 23601 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 141635690 141635690 + Missense_Mutation SNP G G A rs117965702 alternate_allele TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CLEC5A-90 NM_013252 exon5 c.C269T p.S90L CAAGATGATTCAG . 76 27 60 0 G|0.998;T|0.002 0 0 0 0 0 OR6V1 346517 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 142750104 142750104 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . OR6V1-23 NM_001001667 exon1 c.G667C p.V223L ACCACTGTGCTGC . 264 102 208 0 . 0 0 0 0 0 SSPO 23145 hgsc.bcm.edu;mdanderson.org 37 7 149518553 149518553 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_198455 exon88 c.C12622T p.Q4208X TGCCCTCAGCCCT . 56 22 9 0 . 0 0 0 0 0 MFHAS1 9258 hgsc.bcm.edu 37 8 8750467 8750467 + Silent SNP A A G rs1062988 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MFHAS1-90 NM_004225 exon1 c.T102C p.L34L GGCGGTAAGCGTG . 7 6 0 0 A|0.857;G|0.143 0 0 0 0 0 UNC5D 137970 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 35579843 35579843 + Silent SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . UNC5D-96 NM_080872 exon9 c.C1233G p.G411G CTATGGCGTGGAC . 207 120 166 0 . 0 0 0 0 0 PRKDC 5591 broad.mit.edu 37 8 48801138 48801138 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PRKDC-1515 . . . . CAGACACAACAGC . 160 4 244 1 . 1 1 0 0 0 PXDNL 137902 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 52321329 52321329 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PXDNL-70 NM_144651 exon17 c.C2855A p.P952H AAACAGGGGCTCT . 144 82 111 1 . 0 0 0 0 0 ST18 9705 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 53071652 53071652 + Missense_Mutation SNP G G C novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ST18-95 NM_014682 exon15 c.C1612G p.P538A TCACTGGATTTGG . 34 17 24 0 . 0 0 0 0 0 HEY1 23462 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 80677603 80677603 + Silent SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . HEY1-658 NM_001040708 exon5 c.C747T p.T249T GGCGGAGGTGACC . 283 30 115 0 . 3 3 0 0 0 MTDH 92140 hgsc.bcm.edu 37 8 98656966 98656966 + Missense_Mutation SNP G G T rs17854373 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MTDH-91 NM_178812 exon1 c.G232T p.A78S GCCGGCGCCCGCA . 12 4 1 0 G|0.973;T|0.027 1 1 0 0 0 ZFPM2 23414 broad.mit.edu;bcgsc.ca 37 8 106813740 106813740 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ZFPM2-139 NM_012082 exon8 c.C1430A p.P477Q CTAGCCCAAGACT . 53 38 52 2 . 0 0 0 0 0 CSMD3 114788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 114449052 114449052 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CSMD3-1132 NM_052900 exon1 c.C32A p.A11E TCCTTTGCTCGGC . 44 32 43 0 . 0 0 0 0 0 THEM6 51337 hgsc.bcm.edu 37 8 143809193 143809193 + Silent SNP C C T rs2257840 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_016647 exon1 c.C429T p.G143G GGACGGCTTCGTG . 5 5 0 0 C|0.534;T|0.466 17 0 17 0 0 CYP11B2 1585 ucsc.edu 37 8 143994279 143994279 + Silent SNP A A G rs61757295 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CYP11B2-90 NM_000498 exon7 c.T1144C p.L382L GCTCCAAAAACAG . 354 89 128 10 A|0.992;G|0.008 0 0 0 0 0 ZNF696 79943 hgsc.bcm.edu 37 8 144378868 144378868 + Silent SNP A A G rs7386259 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ZNF696-90 NM_030895 exon3 c.A1023G p.R341R CCAGCGACTCCAC . 9 8 0 0 A|0.118;G|0.882 1 0 1 0 0 MROH6 642475 hgsc.bcm.edu 37 8 144649601 144649601 + Silent SNP A A G rs13268196 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_001100878 exon14 c.T1968C p.A656A GGCCACAGCCGGC . 4 4 0 0 A|0.057;G|0.943 3 0 3 0 0 MROH6 642475 hgsc.bcm.edu 37 8 144649625 144649625 + Silent SNP T T C rs10097556 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_001100878 exon14 c.A1944G p.R648R CTGCAGTCGCCCT . 13 13 0 0 T|0.058;C|0.942 0 0 0 0 0 LRRC24 441381 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 8 145747994 145747994 + Silent SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . LRRC24-90 NM_001024678 exon5 c.G1407A p.E469E GAACATCTCGTGG . 301 57 66 0 . 16 13 3 0 0 ZNF517 340385 hgsc.bcm.edu 37 8 146033347 146033347 + Missense_Mutation SNP T T C rs2976653 TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ZNF517-90 NM_213605 exon5 c.T1046C p.V349A GCGGCGTGGGGCA . 10 9 0 0 G|0.992;C|0.006 0 0 0 0 0 SLC1A1 6505 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 4573909 4573909 + Missense_Mutation SNP A A T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SLC1A1-514 NM_004170 exon8 c.A770T p.Y257F CCAGTTATATGCC . 137 21 104 0 . 0 0 0 0 0 CNTLN 54875 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 17462995 17462995 + Nonsense_Mutation SNP A A T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CNTLN-91 NM_017738 exon20 c.A3388T p.K1130X CACATAAAGGAAA . 335 104 283 0 . 4 4 0 0 0 ADAMTSL1 92949 hgsc.bcm.edu 37 9 18776919 18776919 + Missense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ADAMTSL1-230 NM_001040272 exon19 c.C2692T p.R898C GTGCTGCGCTGCC . 139 47 5 0 . 0 0 0 0 0 DENND4C 55667 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 19300261 19300261 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . DENND4C-92 NM_017925 exon9 c.G1243T p.E415X TTACTTGAGAGTA . 80 31 70 0 . 0 0 0 0 0 ELAVL2 1993 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 23701604 23701604 + Splice_Site SNP T T A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ELAVL2-516 NM_004432 exon6 c.488-2A>T . TATGCCTATGGTA . 99 41 103 1 . 0 0 0 0 0 TUSC1 286319 hgsc.bcm.edu 37 9 25678122 25678122 + Silent SNP G G C rs72631814 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TUSC1-90 NM_001004125 exon1 c.C198G p.A66A CAGGTCGGCAAAC . 31 11 2 0 G|0.807;C|0.193 0 0 0 0 0 UNC13B 10497 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 35366986 35366986 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . UNC13B-157 NM_006377 exon11 c.G1210A p.E404K CTCCCGGAAGGGT . 80 18 60 0 . 0 0 0 0 0 TPM2 7169 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 35684309 35684309 + Missense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TPM2-515 NM_213674 exon8 c.G706A p.E236K GGGTCTCAGCCTG . 116 35 98 0 . 0 0 0 0 0 FRMPD1 22844 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 37733737 37733737 + Missense_Mutation SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FRMPD1-159 NM_014907 exon12 c.C1133T p.S378F TTATTTCTGCTGC . 27 11 34 0 . 0 0 0 0 0 SPATA31A6 389730 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 43627291 43627291 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_001145196 exon4 c.C1396T p.L466F GGAAAAGCAGTGG . 27 19 14 0 . 0 0 0 0 0 APBA1 320 hgsc.bcm.edu;broad.mit.edu;mdanderson.org 37 9 72132096 72132096 + Missense_Mutation SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . APBA1-91 NM_001163 exon2 c.G31C p.E11Q TCACCTCCACCTC . 41 16 10 0 . 0 0 0 0 0 MURC 347273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 103348271 103348271 + Silent SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MURC-69 NM_001018116 exon2 c.G633A p.R211R GACACGGCAGAAT . 128 26 94 0 . 0 0 0 0 0 OR13C3 138803 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 107298061 107298061 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . OR13C3-69 NM_001001961 exon1 c.C1034A p.P345Q TGAATTGGTTTTT . 103 29 83 0 . 0 0 0 0 0 OR13D1 286365 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 107457687 107457687 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . OR13D1-70 NM_001004484 exon1 c.G985T p.V329F AAAGAGGTCAAAG . 71 20 43 0 . 0 0 0 0 0 IKBKAP 8518 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 111679945 111679945 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . IKBKAP-318 NM_003640 exon9 c.C746T p.S249L CTGCCTGAGGGTC . 92 46 88 0 . 0 0 0 0 0 AKAP2 11217 hgsc.bcm.edu 37 9 112811038 112811038 + Missense_Mutation SNP C C T rs78923754 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . AKAP2-24 NM_001004065 exon1 c.C59T p.P20L GACCCCCGGAGTC . 9 7 0 0 C|0.917;T|0.083 0 0 0 0 0 KIAA1958 158405 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 115336645 115336645 + Silent SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . KIAA1958-91 NM_133465 exon2 c.G285A p.Q95Q GACACAGACTAGC . 176 67 141 0 . 0 0 0 0 0 TLR4 7099 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 120475158 120475158 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . TLR4-577 NM_138554 exon3 c.C752A p.A251D GTCTGGCTGGTTT . 28 13 35 0 . 0 0 0 0 0 LHX6 26468 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 124979518 124979518 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . LHX6-90 NM_014368 exon5 c.G511T p.D171Y CCCAGTCGCTGGC . 163 19 51 0 . 0 0 0 0 0 OR1J4 26219 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 125281773 125281773 + Missense_Mutation SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . OR1J4-90 NM_001004452 exon1 c.G354T p.M118I TTCAATGGCATAC . 161 63 125 1 . 0 0 0 0 0 RC3H2 54542 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 125645584 125645584 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . RC3H2-523 NM_018835 exon5 c.G658T p.V220L AAAGTACCAGAAC . 138 49 132 0 . 2 0 2 0 0 DENND1A 57706 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 126439003 126439003 + Missense_Mutation SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . DENND1A-92 NM_024820 exon6 c.G368C p.R123T ACCTGTCTTTTTG . 36 16 33 0 . 0 0 0 0 0 PTGDS 5730 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 139874677 139874677 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PTGDS-91 NM_000954 exon5 c.C491A p.T164N AATTCACCGCCTT . 157 48 122 0 . 2 2 0 0 0 NELFB 25920 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 9 140150001 140150001 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_015456 exon1 c.G40A p.E14K AACGGCGAGGACC . 120 47 31 0 . 21 9 12 0 0 PPP2R3B 28227 ucsc.edu;bcgsc.ca 37 X 299594 299594 + Silent SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . PPP2R3B-136 NM_013239 exon11 c.G1389A p.L463L GTTAGCCAGCTTG . 401 228 341 2 . 0 0 0 0 0 ARSH 347527 bcgsc.ca 37 X 2945477 2945477 + Missense_Mutation SNP C C T rs61751925 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ARSH-130 NM_001011719 exon7 c.C1160T p.T387M ATCCGACGCTGTC . 123 5 116 0 C|0.940;T|0.060 0 0 0 0 0 FRMPD4 9758 broad.mit.edu 37 X 12734328 12734328 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . FRMPD4-263 NM_014728 exon15 c.G1750A p.D584N ATCACAGACAGCA . 58 4 51 0 . 0 0 0 0 0 CACNA1F 778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 49083514 49083514 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CACNA1F-176 NM_001256789 exon9 c.G1194T p.E398D GTCTTCCTCCATC . 67 45 54 0 . 0 0 0 0 0 KIAA2022 340533 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 73962657 73962657 + Missense_Mutation SNP C C A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . KIAA2022-183 NM_001008537 exon3 c.G1735T p.A579S GCTTGGCATATTT . 49 39 54 0 . 0 0 0 0 0 CYLC1 1538 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 83124906 83124906 + Silent SNP C C T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CYLC1-112 NM_021118 exon2 c.C51T p.S17S TAATTCCATTCCA . 67 37 89 0 . 0 0 0 0 0 CSTF2 1478 broad.mit.edu 37 X 100075447 100075447 + Silent SNP T T G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CSTF2-131 NM_001325 exon1 c.T42G p.S14S TCGTTCTCTACGT . 182 4 105 0 . 7 7 0 0 0 SEPT6 23157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 118774715 118774715 + Missense_Mutation SNP C C G novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SEPT6-969 NM_145802 exon6 c.G727C p.E243Q TCAGTTCTTCTGT . 79 61 51 0 . 6 3 3 0 0 GRIA3 2892 bcgsc.ca 37 X 122537277 122537277 + Silent SNP T T C rs502434 byfrequency TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 T - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . GRIA3-134 NM_000828 exon9 c.T1200C p.N400N CTGGAATGAGTAT . 112 5 59 0 T|0.362;0|0.004 0 0 0 0 0 GPR112 139378 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 135431107 135431107 + Missense_Mutation SNP G G A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . GPR112-183 NM_153834 exon6 c.G5242A p.E1748K GTTCCTGAAAATA . 28 19 30 0 . 0 0 0 0 0 MIR506 574511 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 146312342 146312342 + RNA SNP G G T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . . . . . CACATAGTATGGC . 155 99 133 0 . 0 0 0 0 0 MAGEA2 4101 hgsc.bcm.edu 37 X 151886093 151886093 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_175742 exon6 c.498delG p.V166fs CGAGGTGGTGGAA . 585 207 422 0 . 0 0 0 0 0 MAGEA2 4101 hgsc.bcm.edu 37 X 151919389 151919389 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_175742 exon6 c.499delG p.V167fs CTTCCACCACCTC . 606 196 471 0 . 0 0 0 0 0 SPTA1 6708 hgsc.bcm.edu;bcgsc.ca 37 1 158627366 158627367 + Frame_Shift_Ins INS - - T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SPTA1-142 NM_003126 exon19 c.2706_2707insA p.Q902fs GTACTGCTGGAAC . 208 155 112 0 . 0 0 0 0 0 NCOR2 9612 broad.mit.edu 37 12 124824721 124824722 + In_Frame_Ins INS - - GCCGCTGCT rs143952466 bycluster;by1000genomes TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . NCOR2-229 NM_006312 exon39 c.5518_5519insAGCAGCGGC p.G1840delinsSSGG CACCCCCGCCGCT . 36 12 4 0 . 0 0 0 0 0 NAALADL2 254827 broad.mit.edu 37 3 175293828 175293829 + Splice_Site INS - - A novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . NAALADL2-47 NM_207015 exon10 c.1654-1->A . TTTTCAGAAAAAT . 54 8 48 0 . 0 0 0 0 0 ELAVL2 1993 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 23693475 23693476 + Frame_Shift_Ins INS - - T novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ELAVL2-516 NM_004432 exon6 c.723_724insA p.N241fs GAGCAGATTGTCC . 122 42 107 0 . 0 0 0 0 0 ELTD1 64123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 79385979 79385980 + Missense_Mutation DNP CC CC AA novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . ELTD1-24 NM_022159 exon10 c.G1349T p.W450F AAGAACCAGAAGG . 45 6 45 0 . 0 0 0 0 0 MUC2 4583 bcgsc.ca 37 11 1093104 1093105 + Missense_Mutation DNP CC CC AG novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . MUC2-90 NM_002457 exon30 c.C4924G p.P1642A CCAACCCCAACAC . 176 0 105 0 . 0 0 0 0 0 SDS 10993 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 12 113836362 113836363 + Missense_Mutation DNP GG GG AT novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 GG GG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . SDS-91 NM_006843 exon5 c.C382A p.P128M AACCCGGGTTGTT . 68 0 33 0 . 0 0 0 0 0 KRTAP4-7 100132476 hgsc.bcm.edu 37 17 39240804 39240805 + Missense_Mutation DNP CG CG AT novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 CG CG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . . NM_033061 exon1 c.G347T p.R116I GCTGCCGCCCCTG . 162 0 46 0 . 0 0 0 0 0 LIM2 3982 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 51890472 51890473 + Missense_Mutation DNP CC CC AA novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . LIM2-90 NM_030657 exon2 c.G225T p.D76Y GAGGTCCGCCCTG . 79 5 67 0 C|0.999;T|0.001 0 0 0 0 0 CDH9 1007 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 26881656 26881657 + Missense_Mutation DNP CC CC AA novel TCGA-OR-A5JB-01A-11D-A29I-10 TCGA-OR-A5JB-10A-01D-A29L-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx ae895223-2bbb-4ce7-af4d-f8d66be796b5 d5966629-ec69-40d3-bd5e-28e207c0da9d . CDH9-99 NM_016279 exon12 c.G1958T p.R653L TTGTCCCGGACAT . 45 1 43 0 . 0 0 0 0 0