Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
TTLL10	254173	hgsc.bcm.edu	37	1	1132966	1132966	+	Silent	SNP	C	C	A	rs2274790	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	TTLL10-153	NM_001130045	exon16	c.C1761A	p.P587P	GCCGCCCCTGCCC	.	12	12	0	0	C|0.737;A|0.263	0	0	0	0	0
AJAP1	55966	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	4772335	4772335	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	AJAP1-515	NM_018836	exon2	c.G405A	p.S135S	GTCCTCGTCCTCG	.	21	11	12	0	.	2	0	2	0	0
FHAD1	114827	bcgsc.ca	37	1	15642956	15642956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	FHAD1-69	NM_052929	exon9	c.G1253T	p.C418F	AACTCTGCAAAAC	.	198	8	246	0	.	1	1	0	0	0
AGMAT	79814	hgsc.bcm.edu	37	1	15911349	15911349	+	Silent	SNP	G	G	A	rs3737705	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	AGMAT-91	NM_024758	exon1	c.C114T	p.D38D	GGGCGCGTCGGAA	.	18	10	1	0	G|0.647;A|0.353	4	0	4	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	11	11	0	0	G|0.061;T|0.939	0	0	0	0	0
SH3D21	79729	broad.mit.edu	37	1	36773405	36773405	+	Silent	SNP	T	T	G	rs35343437	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	SH3D21-91	NM_001162530	exon6	c.T471G	p.P157P	CAGCCCTGGTCCC	.	210	5	240	3	T|0.555;G|0.445	0	0	0	0	0
RSBN1	54665	hgsc.bcm.edu	37	1	114354654	114354654	+	Silent	SNP	T	T	C	rs3195954	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	RSBN1-91	NM_018364	exon1	c.A381G	p.P127P	ATTCGTTGGCGGC	.	21	7	5	0	T|0.861;C|0.139	4	2	2	0	0
OR6N2	81442	bcgsc.ca	37	1	158746678	158746678	+	Missense_Mutation	SNP	T	T	C	rs41273541	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	OR6N2-68	NM_001005278	exon1	c.A748G	p.I250V	AGAAGATGAGGAC	.	176	7	232	2	T|0.900;C|0.100	0	0	0	0	0
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176525604	176525604	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	PAPPA2-548	NM_020318	exon2	c.G146A	p.R49H	GAGAACGTTGTTG	.	194	66	246	0	.	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	12	7	0	0	T|0.229;C|0.771	1	0	1	0	0
ABL2	27	bcgsc.ca	37	1	179077613	179077613	+	Missense_Mutation	SNP	T	T	C	rs17277288	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ABL2-1081	NM_007314	exon12	c.A2789G	p.K930R	GGCACTTTGTGGT	.	102	5	116	1	T|0.989;C|0.011	0	0	0	0	0
TPR	7175	broad.mit.edu;bcgsc.ca	37	1	186303520	186303520	+	Missense_Mutation	SNP	T	T	C	rs35766045	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	TPR-228	NM_003292	exon36	c.A5119G	p.T1707A	GATTTGTAACAGT	.	260	8	321	2	T|0.996;C|0.004	29	29	0	0	0
IDI1	3422	hgsc.bcm.edu	37	10	1094906	1094906	+	Missense_Mutation	SNP	C	C	T	rs7091756	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	IDI1-90	NM_004508	exon1	c.G38A	p.C13Y	GCCGCGCAGCCAA	.	49	33	0	0	C|0.981;T|0.019	7	1	6	0	0
GPRIN2	9721	hgsc.bcm.edu	37	10	47000217	47000217	+	Missense_Mutation	SNP	G	G	A	rs72780221	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	GPRIN2-90	NM_014696	exon3	c.G1337A	p.R446H	TGCGGCGCCCCAG	.	35	11	1	0	G|0.901;A|0.099	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266696	1266696	+	Silent	SNP	A	A	C	rs4046509	bycluster;byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	.	NM_002458	exon31	c.A8586C	p.P2862P	GGCCCCAATAACC	.	104	68	195	5	A|0.500;C|0.500	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266716	1266716	+	Missense_Mutation	SNP	T	T	C	rs80150964		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	.	NM_002458	exon31	c.T8606C	p.M2869T	TGACCATGGGCTG	.	117	56	221	3	C|1.000;|0.000	0	0	0	0	0
TMEM132A	54972	hgsc.bcm.edu	37	11	60701987	60701987	+	Silent	SNP	G	G	A	rs7715	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	TMEM132A-227	NM_017870	exon9	c.G1590A	p.S530S	GGCGTCGGATGAG	.	5	4	0	0	G|0.581;A|0.419	125	0	125	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751542	76751542	+	Splice_Site	DEL	T	T	-	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	.	NM_138706	exon2	c.946+1T>-	.	TGTGTCTTGGAGC	.	18	18	0	0	.	0	0	0	0	0
ITPR2	3709	broad.mit.edu	37	12	26628350	26628350	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ITPR2-542	NM_002223	exon45	c.T6221G	p.V2074G	ACATCCACCTATC	.	90	22	47	11	.	0	0	0	0	0
METTL7B	196410	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	56075586	56075586	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	METTL7B-514	NM_152637	exon1	c.C48T	p.T16T	TCTTACCCTGCCC	.	99	7	78	0	.	0	0	0	0	0
NUDT4	11163	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	93792979	93792979	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	NUDT4-90	NM_199040	exon5	c.G370C	p.E124Q	AAAGTAGAAGATG	.	275	69	217	0	.	76	63	13	0	0
BTBD11	121551	hgsc.bcm.edu	37	12	107713511	107713511	+	Missense_Mutation	SNP	G	G	C	rs961498	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	BTBD11-93	NM_001018072	exon1	c.G794C	p.G265A	GCCCTGGGTCAGG	.	13	7	0	0	G|0.588;C|0.412	0	0	0	0	0
FAM109A	144717	hgsc.bcm.edu	37	12	111800827	111800835	+	In_Frame_Del	DEL	GCCACCCCC	GCCACCCCC	-	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	GCCACCCCC	GCCACCCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	FAM109A-90	NM_001177996	exon4	c.436_444del	p.146_148del	GGCCATGCCACCC	.	37	14	2	0	.	0	0	0	0	0
CCDC168	643677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	103382007	103382007	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	.	NM_001146197	exon4	c.C21040G	p.P7014A	AAAAGGGCCGGTT	.	106	16	80	0	.	0	0	0	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	11	9	0	0	C|0.372;T|0.628	6	2	4	0	0
ACIN1	22985	ucsc.edu	37	14	23548787	23548787	+	Missense_Mutation	SNP	C	C	T	rs61741619	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ACIN1-156	NM_001164814	exon6	c.G1931A	p.R644H	CGAGAACGTGAAC	.	335	42	185	0	C|0.985;T|0.015	0	0	0	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	.	NM_018139	exon1	c.G1185C	p.A395A	GTCCTCCGCGCGA	.	20	10	0	0	C|0.569;G|0.431	14	9	5	0	0
ASB2	51676	broad.mit.edu	37	14	94405527	94405527	+	Missense_Mutation	SNP	T	T	G	rs199833352		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ASB2-228	NM_001202429	exon8	c.A1544C	p.H515P	GGCGGGTGCGGGC	.	106	35	75	20	.	1	1	0	0	0
NDUFAF1	51103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41680715	41680715	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	NDUFAF1-91	NM_016013	exon4	c.T765A	p.P255P	GGAAAAAGGAATC	.	98	18	109	0	.	1	1	0	0	0
C15orf48	84419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	45724279	45724279	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	C15orf48-91	NM_197955	exon4	c.A132G	p.R44R	TGATCGAAAAAAA	.	54	16	60	0	.	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	5	5	0	0	A|0.226;C|0.774	0	0	0	0	0
ADAMTS7	11173	hgsc.bcm.edu	37	15	79051846	79051846	+	Missense_Mutation	SNP	T	T	C	rs199524707		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ADAMTS7-226	NM_014272	exon24	c.A4978G	p.I1660V	TGCGGATGGTGGG	.	79	7	21	0	.	60	60	0	0	0
NAGPA	51172	bcgsc.ca	37	16	5077284	5077284	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	NAGPA-90	NM_016256	exon8	c.C1271G	p.S424C	CCTCTGGAGACGC	.	137	5	128	0	.	0	0	0	0	0
CIITA	4261	bcgsc.ca	37	16	10989219	10989219	+	Missense_Mutation	SNP	C	C	G	rs2229317	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	CIITA-226	NM_000246	exon2	c.C133G	p.L45V	GACCCCCTGTGCC	.	130	6	96	0	C|0.937;G|0.063	0	0	0	0	0
ZNF319	57567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	58031921	58031921	+	Silent	SNP	G	G	A	rs144999714		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ZNF319-90	NM_020807	exon2	c.C249T	p.H83H	CAGGTCGTGACCA	.	92	29	70	0	G|1.000;A|0.000	12	10	2	0	0
HYDIN	54768	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	70891677	70891677	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	HYDIN-92	NM_001270974	exon72	c.G12226C	p.V4076L	TGCCTACCAGCAG	.	270	39	291	1	.	2	2	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	29	19	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	29	0	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ZFPM1-90	NM_153813	exon10	c.1335delT	p.P445fs	GGAGCCTCTGGCC	.	21	18	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ZFPM1-90	NM_153813	exon10	c.1337_1339del	p.446_447del	AGCCTCTGGCCCA	.	22	18	0	0	.	0	0	0	0	0
PIEZO1	9780	broad.mit.edu	37	16	88791458	88791458	+	Missense_Mutation	SNP	G	G	A	rs11645197	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	.	NM_001142864	exon30	c.C4193T	p.P1398L	CTCCGTGGCGGGG	.	82	4	37	0	G|0.827;A|0.173	24	24	0	0	0
WDR81	124997	ucsc.edu;bcgsc.ca	37	17	1640812	1640812	+	Missense_Mutation	SNP	G	G	A	rs200284291		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	WDR81-91	NM_001163809	exon10	c.G5659A	p.V1887M	GGCACCGTGTCCA	.	140	55	194	2	.	35	16	19	0	0
ZZEF1	23140	hgsc.bcm.edu	37	17	4046101	4046101	+	Missense_Mutation	SNP	A	A	G	rs1454121		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ZZEF1-93	NM_015113	exon1	c.T89C	p.V30A	CCCGAGACCGCGG	.	10	10	0	0	A|0.188;G|0.812	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	GLTPD2-68	NM_001014985	exon4	c.C627A	p.D209E	CCCGGACGCGGGC	.	10	10	0	0	C|0.015;A|0.985	0	0	0	0	0
GUCY2D	3000	hgsc.bcm.edu	37	17	7906426	7906426	+	Missense_Mutation	SNP	T	T	C	rs9905402	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	GUCY2D-319	NM_000180	exon2	c.T61C	p.W21R	CCCGCGTGGTGGG	.	6	5	0	0	T|0.896;C|0.104	0	0	0	0	0
RNF135	84282	hgsc.bcm.edu	37	17	29298413	29298413	+	Missense_Mutation	SNP	T	T	C	rs7211440	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	RNF135-227	NM_197939	exon1	c.T322C	p.S108P	TCCAGTTCCCTCT	.	12	12	0	0	T|0.825;C|0.175	10	0	10	0	0
ARHGAP23	57636	hgsc.bcm.edu	37	17	36666551	36666551	+	Silent	SNP	T	T	C	rs62074752		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ARHGAP23-205	NM_001199417	exon24	c.T3819C	p.D1273D	GGGGGATGAGGCG	.	6	6	0	0	C|0.823;G|0.000;T|0.177	6	0	6	0	0
KRT26	353288	bcgsc.ca	37	17	38928019	38928019	+	Missense_Mutation	SNP	T	T	C	rs73985745	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	KRT26-90	NM_181539	exon1	c.A347G	p.K116R	CAGCCCTTGATCT	.	112	5	142	1	T|0.992;C|0.008	0	0	0	0	0
GRIN2C	2905	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	72846371	72846371	+	Missense_Mutation	SNP	C	C	T	rs140384270	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	GRIN2C-228	NM_000835	exon6	c.G1465A	p.G489S	ATACGCCGCGCAC	.	94	5	163	0	C|0.999;T|0.001	8	8	0	0	0
UBALD2	283991	bcgsc.ca	37	17	74261677	74261677	+	Silent	SNP	T	T	C	rs2585751	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	.	NM_182565	exon1	c.T91C	p.L31L	AAGCAGTTGCTGC	.	26	20	14	0	T|0.356;C|0.644	46	8	38	0	0
NDC80	10403	broad.mit.edu	37	18	2616568	2616568	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	NDC80-91	NM_006101	exon17	c.G1924T	p.E642X	TCTGAAGAATGAA	.	93	3	121	0	.	3	3	0	0	0
KIAA1328	57536	bcgsc.ca	37	18	34740290	34740290	+	Missense_Mutation	SNP	A	A	C	rs140424487	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	KIAA1328-90	NM_020776	exon8	c.A1360C	p.K454Q	CATATGAAAGATG	.	127	5	178	2	A|0.994;C|0.006	4	4	0	0	0
CBLN2	147381	hgsc.bcm.edu	37	18	70209321	70209321	+	Silent	SNP	C	C	A	rs7237888		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	CBLN2-90	NM_182511	exon3	c.G75T	p.P25P	GCCGCCCGGCTCG	.	19	18	0	0	C|0.390;A|0.610	0	0	0	0	0
PPAP2C	8612	bcgsc.ca	37	19	282753	282753	+	Missense_Mutation	SNP	G	G	A	rs1138439	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	PPAP2C-90	NM_177543	exon4	c.C602T	p.A201V	CTCACCGCCAAGA	.	161	6	114	2	T|0.152;G|0.332;C|0.259;A|0.258	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929741	929741	+	Silent	SNP	C	C	T	rs34967265	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ARID3A-90	NM_005224	exon2	c.C213T	p.G71G	TGCGGGCCTGGGA	.	19	12	0	0	C|0.865;T|0.135	0	0	0	0	0
KLF16	83855	hgsc.bcm.edu	37	19	1854557	1854557	+	Silent	SNP	A	A	G	rs3746045	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	KLF16-90	NM_031918	exon2	c.T660C	p.P220P	GGCACCAGGGCGC	.	20	19	1	0	A|0.591;G|0.409	17	0	17	0	0
JSRP1	126306	hgsc.bcm.edu	37	19	2253732	2253732	+	Missense_Mutation	SNP	G	G	A	rs74521370		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	JSRP1-91	NM_144616	exon5	c.C323T	p.P108L	GGCGGCGGCGGCG	.	13	11	0	0	G|0.994;A|0.006	0	0	0	0	0
ANKRD24	170961	hgsc.bcm.edu	37	19	4217956	4217956	+	Silent	SNP	A	A	G	rs6510794	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ANKRD24-68	NM_133475	exon18	c.A2799G	p.A933A	CCGGGCAGCCAGT	.	16	16	0	0	A|0.541;G|0.459	4	0	4	0	0
C19orf10	56005	hgsc.bcm.edu	37	19	4670313	4670313	+	Missense_Mutation	SNP	C	C	G	rs2270090	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	C19orf10-90	NM_019107	exon1	c.G34C	p.G12R	TCGCGCCGACGCC	.	32	17	0	0	C|0.752;G|0.248	45	28	17	0	0
RANBP3	8498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5951537	5951537	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	RANBP3-272	NM_007322	exon3	c.A149T	p.H50L	GTGCCATGGTGGG	.	103	18	60	0	.	18	16	2	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399628	8399628	+	Silent	SNP	A	A	G	rs710949	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	KANK3-90	NM_198471	exon3	c.T1083C	p.S361S	CTCCAGACTGGCG	.	13	13	1	0	A|0.411;G|0.589	1	0	1	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399635	8399635	+	Missense_Mutation	SNP	C	C	T	rs890853	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	KANK3-90	NM_198471	exon3	c.G1076A	p.R359H	CTGGCGCGCAGCA	.	11	8	1	0	C|0.769;T|0.231	0	0	0	0	0
NWD1	284434	broad.mit.edu;bcgsc.ca	37	19	16860082	16860082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	NWD1-7	NM_001007525	exon6	c.G629A	p.R210Q	TGGACCGGCTCGC	.	251	70	146	1	.	0	0	0	0	0
LRP3	4037	hgsc.bcm.edu	37	19	33696354	33696354	+	Silent	SNP	C	C	T	rs3745977	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	LRP3-92	NM_002333	exon5	c.C678T	p.R226R	CACGCGCTGCCTG	.	64	34	0	0	C|0.945;T|0.055	141	62	79	0	0
UBA2	10054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34929551	34929551	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	UBA2-227	NM_005499	exon6	c.G461C	p.G154A	CATAGGGTGTGAC	.	189	47	113	0	.	0	0	0	0	0
HPN	3249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35551399	35551399	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	HPN-515	NM_182983	exon8	c.C603T	p.A201A	GACAGCCGCCCAC	.	136	28	72	0	.	0	0	0	0	0
ZNF585B	92285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37677163	37677163	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ZNF585B-91	NM_152279	exon5	c.A1276T	p.I426F	GTGTAATCAAGTG	.	156	42	103	0	.	6	4	2	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	35	24	0	0	G|0.349;A|0.651	0	0	0	0	0
ZNF575	284346	broad.mit.edu	37	19	44039527	44039527	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ZNF575-90	NM_174945	exon4	c.A426C	p.A142A	CCACGCACCCACC	.	137	29	20	1	.	0	0	0	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127378	47127378	+	Silent	SNP	C	C	A	rs76887099		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	PTGIR-522	NM_000960	exon2	c.G105T	p.L35L	GATGCCCAGGGCC	.	7	4	0	0	C|0.998;A|0.002	4	3	1	0	0
GLTSCR2	29997	hgsc.bcm.edu	37	19	48258699	48258699	+	Missense_Mutation	SNP	C	C	T	rs11538665		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	GLTSCR2-514	NM_015710	exon9	c.C1148T	p.A383V	GGCTGGCGGAGCT	.	17	14	0	0	G|0.994;A|0.006	272	118	152	0	2
GLTSCR2	29997	hgsc.bcm.edu	37	19	48258717	48258717	+	Missense_Mutation	SNP	A	A	G	rs1804994	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	GLTSCR2-514	NM_015710	exon9	c.A1166G	p.Q389R	GGCGGCAGAGGCG	.	13	13	0	0	A|0.308;G|0.692	95	0	95	0	0
PRR12	57479	hgsc.bcm.edu	37	19	50104948	50104948	+	Missense_Mutation	SNP	C	C	A	rs142810131		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	PRR12-70	NM_020719	exon6	c.C4546A	p.P1516T	CCACCACCCCCAC	.	25	13	0	0	C|0.976;A|0.024	20	12	8	0	0
SCAF1	58506	hgsc.bcm.edu	37	19	50154904	50154904	+	Missense_Mutation	SNP	A	A	C	rs7251334		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	SCAF1-68	NM_021228	exon7	c.A1258C	p.T420P	CGGCCTACACCGG	.	9	9	0	0	A|0.017;C|0.983	14	0	14	0	0
SCAF1	58506	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50156834	50156834	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	SCAF1-68	NM_021228	exon7	c.C3188G	p.S1063C	CGGGGTCCACAGC	.	93	17	20	0	.	164	129	35	0	0
MYH14	79784	hgsc.bcm.edu	37	19	50713713	50713713	+	Missense_Mutation	SNP	C	C	A	rs590722		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	MYH14-23	NM_001077186	exon2	c.C91A	p.P31T	TTCACGCCCCGCG	.	7	4	1	0	T|0.171;G|0.829	0	0	0	0	0
VN1R2	317701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53761677	53761677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	VN1R2-90	NM_173856	exon1	c.A49G	p.I17V	ATAAATATCAGCG	.	120	28	79	0	.	5	5	0	0	0
FIZ1	84922	hgsc.bcm.edu	37	19	56104152	56104152	+	Silent	SNP	G	G	A	rs114339119		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	FIZ1-90	NM_032836	exon3	c.C1155T	p.G385G	CTCCCCGCCGCCC	.	33	17	0	0	G|0.984;A|0.016	18	7	10	1	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599405	56599405	+	Missense_Mutation	SNP	C	C	G	rs4077285		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ZNF787-69	NM_001002836	exon3	c.G1136C	p.G379A	TCCCCACCGCGGC	.	4	4	0	0	C|0.668;G|0.332	3	0	3	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ZNF787-69	NM_001002836	exon3	c.1101_1103del	p.367_368del	GCGGCCTCGTCGT	.	23	20	2	2	.	0	0	0	0	0
ZNF444	55311	hgsc.bcm.edu	37	19	56671359	56671359	+	Missense_Mutation	SNP	C	C	G	rs145075834		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ZNF444-90	NM_018337	exon5	c.C773G	p.T258S	GCAAGACCTTCTA	.	41	9	6	0	C|0.987;G|0.013	8	4	4	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	16	16	0	0	G|0.301;C|0.699	0	0	0	0	0
TRAPPC12	51112	hgsc.bcm.edu	37	2	3391826	3391826	+	Silent	SNP	C	C	T	rs11127423		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	.	NM_016030	exon2	c.C432T	p.A144A	CGAAGCCGCGCGC	.	10	10	0	0	C|0.719;T|0.281	13	0	13	0	0
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21224859	21224859	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	APOB-175	NM_000384	exon29	c.13435delA	p.S4479fs	CCTGGCTTTTAAT	.	53	19	62	0	.	0	0	0	0	0
ITSN2	50618	hgsc.bcm.edu;bcgsc.ca	37	2	24522816	24522816	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ITSN2-539	NM_147152	exon12	c.C1306A	p.R436R	CCTCTCGTTGTCT	.	68	4	65	0	.	3	3	0	0	0
CLIP4	79745	bcgsc.ca	37	2	29356669	29356669	+	Silent	SNP	A	A	G	rs3100232	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	CLIP4-91	NM_024692	exon5	c.A516G	p.T172T	GAAAACATCGAAA	.	66	5	85	1	A|0.551;G|0.449	0	0	0	0	0
FAM98A	25940	bcgsc.ca	37	2	33810648	33810648	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	FAM98A-91	NM_015475	exon7	c.A837G	p.L279L	TGTCCTTAAAATC	.	90	4	114	0	.	15	15	0	0	0
DYNC2LI1	51626	broad.mit.edu	37	2	44021826	44021826	+	Missense_Mutation	SNP	T	T	A	rs9309107	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	DYNC2LI1-91	NM_015522	exon6	c.T551A	p.F184Y	TCCCATTTATAGT	.	117	4	131	0	A|0.389;N|0.001	9	9	0	0	0
DNAH6	1768	broad.mit.edu	37	2	84954849	84954849	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	DNAH6-69	NM_001370	exon61	c.G10029T	p.L3343L	GCGCCTGGACGTA	.	118	3	156	0	.	0	0	0	0	0
LONRF2	164832	hgsc.bcm.edu	37	2	100938481	100938481	+	Missense_Mutation	SNP	C	C	G	rs74177696		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	LONRF2-154	NM_198461	exon1	c.G75C	p.Q25H	TAAGCGCTGGGCG	.	7	7	0	0	C|0.540;G|0.460	2	0	2	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	.	NM_023016	exon1	c.A126G	p.L42L	CGCCCTAGGCGGC	.	14	14	0	0	A|0.029;G|0.971	1	0	1	0	0
INHBB	3625	hgsc.bcm.edu	37	2	121104111	121104111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	INHBB-93	NM_002193	exon1	c.G347A	p.R116H	AGGTGCGCGAGGA	.	23	13	1	0	.	11	11	0	0	0
NRP2	8828	hgsc.bcm.edu	37	2	206641241	206641245	+	Frame_Shift_Del	DEL	GCACT	GCACT	-	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	GCACT	GCACT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	NRP2-93	NM_018534	exon16	c.2712_2716del	p.904_906del	TGGCTCGCACTGC	.	27	0	18	0	.	0	0	0	0	0
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215914356	215914356	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ABCA12-99	NM_173076	exon6	c.C687G	p.F229L	CTGGGAGAACTGT	.	78	29	127	0	.	0	0	0	0	0
SP110	3431	bcgsc.ca	37	2	231042276	231042276	+	Missense_Mutation	SNP	A	A	G	rs1135791	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	SP110-155	NM_001185015	exon15	c.T1586C	p.M529T	AGGGTCATTCCTT	.	142	5	168	1	A|0.640;G|0.360	10	10	0	0	0
RBM44	375316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238729832	238729832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	RBM44-26	NM_001080504	exon6	c.G2035A	p.E679K	CCACTGGAAGAGC	.	82	37	80	0	.	0	0	0	0	0
ZCCHC3	85364	hgsc.bcm.edu	37	20	278688	278690	+	In_Frame_Del	DEL	CGG	CGG	-	rs5839848	alternate_allele	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	CGG	CGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ZCCHC3-90	NM_033089	exon1	c.461_463del	p.154_155del	ATGAGCCGGCGGC	.	15	15	1	1	.	0	0	0	0	0
LZTS3	0	hgsc.bcm.edu	37	20	3147706	3147706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	.	NM_014731	exon1	c.T104C	p.L35P	ATGGCCAGGCGGG	.	36	10	1	0	.	6	4	2	0	0
FAM182B	728882	broad.mit.edu	37	20	25755510	25755510	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	.	.	.	.	.	CCATCGCGGCCAC	.	129	6	48	0	.	2	2	0	0	0
DNMT3B	1789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31372582	31372582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	DNMT3B-660	NM_175850	exon4	c.G259T	p.D87Y	GATGGCGACGGGG	.	128	36	123	0	.	0	0	0	0	0
STK4	6789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43623747	43623747	+	Missense_Mutation	SNP	G	G	A	rs202070040		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	STK4-767	NM_006282	exon6	c.G542A	p.R181Q	CCAAGCGGAATAC	.	169	56	149	0	G|0.999;A|0.000	3	0	3	0	0
DNTTIP1	116092	hgsc.bcm.edu	37	20	44420682	44420682	+	Silent	SNP	T	T	C	rs2664591	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	DNTTIP1-91	NM_052951	exon1	c.T39C	p.P13P	GGGACCTAGCGGG	.	6	5	1	0	T|0.311;C|0.689	5	0	5	0	0
TMPRSS2	7113	hgsc.bcm.edu	37	21	42879909	42879909	+	Missense_Mutation	SNP	C	C	A	rs75603675	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	TMPRSS2-5208	NM_001135099	exon1	c.G23T	p.G8V	CTTTCACCTCCGG	.	5	5	0	0	C|0.732;A|0.268	0	0	0	0	0
KRTAP10-4	386672	ucsc.edu	37	21	45993851	45993851	+	Silent	SNP	C	C	T	rs543299		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	KRTAP10-4-90	NM_198687	exon1	c.C216T	p.C72C	GACCTGCGAGCCC	.	107	37	43	5	C|1.000;|0.000	0	0	0	0	0
IL17RA	23765	hgsc.bcm.edu	37	22	17590180	17590180	+	Missense_Mutation	SNP	G	G	A	rs41323645		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	IL17RA-92	NM_014339	exon13	c.G2071A	p.A691T	GGTGCCGCAGTCC	.	11	10	0	0	G|0.897;A|0.103	5	0	5	0	0
ZNF70	7621	bcgsc.ca	37	22	24086107	24086107	+	Silent	SNP	A	A	G	rs5759985	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ZNF70-92	NM_021916	exon2	c.T1221C	p.I407I	GTGCTCAATGAGG	.	86	5	137	2	A|0.481;G|0.519	1	1	0	0	0
GSTT2	2953	bcgsc.ca	37	22	24323227	24323227	+	Splice_Site	SNP	G	G	A	rs76498342	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	GSTT2-68	NM_000854	exon2	c.200+1G>A	.	CGAAAGGTGCCCT	.	267	10	603	3	G|0.847;A|0.153	0	0	0	0	0
C22orf28	51493	bcgsc.ca	37	22	32795641	32795641	+	Silent	SNP	C	C	T	rs5749426	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	C22orf28-90	NM_014306	exon6	c.G603A	p.Q201Q	GTCAGCCTGCAGC	.	57	4	139	0	C|0.552;T|0.448	39	39	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	18	14	1	0	A|0.354;G|0.646	0	0	0	0	0
CHADL	150356	broad.mit.edu	37	22	41635555	41635555	+	Silent	SNP	C	C	T	rs8135399	bycluster;byfrequency;by1000genomes	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	CHADL-68	NM_138481	exon2	c.G78A	p.R26R	GGCCTGCCTAGCC	.	72	3	123	1	C|0.983;T|0.017	0	0	0	0	0
ACVR2B	93	bcgsc.ca	37	3	38519424	38519424	+	Silent	SNP	A	A	G	rs2070489	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ACVR2B-942	NM_001106	exon3	c.A333G	p.E111E	CAACGAACGCTTC	.	223	8	287	2	A|0.485;G|0.515	1	1	0	0	0
FAM198A	729085	broad.mit.edu	37	3	43097710	43097710	+	Silent	SNP	A	A	G	rs664628	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	FAM198A-68	NM_001129908	exon5	c.A1560G	p.L520L	GTGTCTACAGAAC	.	101	4	124	1	A|0.589;G|0.411	0	0	0	0	0
DOCK3	1795	broad.mit.edu	37	3	51370644	51370644	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	DOCK3-22	NM_004947	exon35	c.A3571C	p.T1191P	TTTGTGACCTCAG	.	53	13	73	4	.	2	2	0	0	0
CCDC54	84692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	107096799	107096799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	CCDC54-90	NM_032600	exon1	c.C365T	p.T122M	GCACAACGACTAA	.	118	52	137	0	.	0	0	0	0	0
HEG1	57493	hgsc.bcm.edu;bcgsc.ca	37	3	124696757	124696757	+	Missense_Mutation	SNP	G	G	T	rs186214189	by1000genomes;alternate_allele	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	HEG1-70	NM_020733	exon15	c.C3767A	p.A1256E	CCTCCCGCGGCTG	.	68	4	101	0	G|0.999;A|0.001	2	2	0	0	0
ZBBX	79740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	167051700	167051700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ZBBX-92	NM_024687	exon10	c.C602A	p.P201H	TCTTTGGGTTCAT	.	62	32	55	0	.	0	0	0	0	0
ATP13A5	344905	broad.mit.edu	37	3	193051683	193051683	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ATP13A5-144	NM_198505	exon11	c.C1128A	p.A376A	CCCTTTGGCTGTA	.	82	3	110	0	.	0	0	0	0	0
TNK2	10188	hgsc.bcm.edu	37	3	195595405	195595405	+	Silent	SNP	G	G	A	rs1056726	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	TNK2-957	NM_001010938	exon13	c.C1953T	p.F651F	CTCACCGAAGTCG	.	18	13	0	0	G|0.936;A|0.064	15	8	7	0	0
CRMP1	1400	hgsc.bcm.edu	37	4	5894586	5894586	+	Silent	SNP	G	G	A	rs143304363		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	CRMP1-92	NM_001014809	exon1	c.C111T	p.A37A	CACCGCGGCGAAC	.	20	7	0	0	G|0.946;A|0.054	0	0	0	0	0
RBM47	54502	hgsc.bcm.edu	37	4	40440854	40440854	+	Silent	SNP	G	G	C	rs1052153	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	RBM47-25	NM_001098634	exon4	c.C57G	p.S19S	CTTGGCGGAGGAC	.	21	21	0	0	G|0.794;C|0.206	13	0	13	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492546	48492546	+	Silent	SNP	C	C	A	rs73144650	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ZAR1-90	NM_175619	exon1	c.C238A	p.R80R	TACCAGCGGGAGC	.	14	10	0	0	C|0.977;A|0.023	0	0	0	0	0
SOWAHB	345079	hgsc.bcm.edu	37	4	77818202	77818202	+	Silent	SNP	T	T	C	rs2645674	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	.	NM_001029870	exon1	c.A801G	p.T267T	CCTGCTTGTCGCA	.	16	7	3	0	T|0.691;C|0.309	0	0	0	0	0
COQ2	27235	hgsc.bcm.edu	37	4	84205872	84205872	+	Missense_Mutation	SNP	C	C	A	rs6818847	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	COQ2-92	NM_015697	exon1	c.G196T	p.V66L	GTGCCACAGCCCG	.	9	5	0	0	C|0.324;A|0.676	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537051	88537051	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	DSPP-90	NM_014208	exon5	c.T3237C	p.S1079S	CAGCAGTGATAGC	.	466	24	484	12	.	0	0	0	0	0
USP38	84640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	144135926	144135926	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	USP38-660	NM_032557	exon9	c.A2797G	p.T933A	AAAATTACGAGCA	.	231	48	218	0	.	37	23	14	0	0
IRX4	50805	hgsc.bcm.edu	37	5	1882129	1882129	+	Silent	SNP	T	T	G	rs2232374	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	IRX4-226	NM_016358	exon2	c.A90C	p.G30G	GCGGCCTCCGGAC	.	13	6	4	0	T|0.735;G|0.265	0	0	0	0	0
NSUN2	54888	hgsc.bcm.edu	37	5	6633071	6633071	+	Missense_Mutation	SNP	G	G	A	rs181415619		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	NSUN2-91	NM_017755	exon1	c.C22T	p.R8W	GCCGCCGACCCCG	.	11	9	1	0	G|0.974;A|0.026	11	7	4	0	0
SRD5A1	6715	hgsc.bcm.edu	37	5	6633779	6633779	+	Silent	SNP	C	C	G	rs248793	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	SRD5A1-90	NM_001047	exon1	c.C90G	p.R30R	CGCGCGCAATCGT	.	9	8	0	0	C|0.454;G|0.546	2	0	2	0	0
PRDM9	56979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	23509687	23509687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	PRDM9-139	NM_020227	exon3	c.G178A	p.A60T	TATAATGCACTGA	.	249	69	145	0	.	0	0	0	0	0
SPEF2	79925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	35667294	35667294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	SPEF2-26	NM_024867	exon9	c.G1288A	p.A430T	GTATGTGCAGAAA	.	337	74	303	0	.	2	2	0	0	0
SNX18	112574	hgsc.bcm.edu	37	5	53814052	53814052	+	Silent	SNP	T	T	C	rs2548615		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	SNX18-226	NM_052870	exon1	c.T270C	p.P90P	CCTGCCTGTCGCG	.	4	4	0	0	G|0.979;C|0.003	0	0	0	0	0
ENC1	8507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	73931914	73931914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ENC1-228	NM_003633	exon2	c.C397T	p.R133W	CATCCCGGATGTC	.	112	25	121	0	.	17	9	8	0	0
PCDHB2	56133	bcgsc.ca	37	5	140476000	140476000	+	Silent	SNP	G	G	T	rs141231979	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	PCDHB2-96	NM_018936	exon1	c.G1626T	p.A542A	CCCGGCGTTGAGC	.	486	44	41	0	G|0.994;T|0.006	47	3	44	0	0
ABLIM3	22885	broad.mit.edu	37	5	148637920	148637920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ABLIM3-93	NM_014945	exon24	c.G2005T	p.A669S	CGGCTGGCCCTCT	.	67	5	65	1	.	0	0	0	0	0
TAP2	6891	bcgsc.ca	37	6	32796751	32796751	+	Missense_Mutation	SNP	T	T	C	rs241447	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	TAP2-90	.	.	.	.	GAACTGTCTGCAG	.	72	5	96	0	T|0.702;C|0.298	16	16	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	26	25	0	0	T|0.441;C|0.559	0	0	0	0	0
NFKBIE	4794	hgsc.bcm.edu	37	6	44233175	44233175	+	Missense_Mutation	SNP	C	C	T	rs2233431	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	NFKBIE-135	NM_004556	exon1	c.G326A	p.C109Y	GCTTGGCAGAGCG	.	6	5	2	0	C|0.987;T|0.013	0	0	0	0	0
PGK2	5232	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49753750	49753750	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	PGK2-91	NM_138733	exon1	c.A1151C	p.N384T	TCAGTGTTCCATT	.	146	70	180	1	.	0	0	0	0	0
STX7	8417	broad.mit.edu	37	6	132793498	132793498	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	STX7-90	NM_003569	exon4	c.T172C	p.Y58H	TAGTATACTGCTG	.	31	4	52	0	.	18	18	0	0	0
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2946306	2946306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	CARD11-870	NM_032415	exon25	c.G3431A	p.R1144H	GTCTTGCGCTGCT	.	187	79	222	0	.	1	1	0	0	0
RAMP3	10268	hgsc.bcm.edu	37	7	45197433	45197433	+	Silent	SNP	G	G	A	rs67477213		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	RAMP3-90	NM_005856	exon1	c.G6A	p.E2E	CATGGAGACTGGA	.	10	10	0	0	G|0.760;A|0.240	18	0	18	0	0
ZAN	7455	bcgsc.ca	37	7	100374087	100374087	+	Missense_Mutation	SNP	A	A	G	rs314300	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ZAN-142	.	.	.	.	ACTTCAATGATGA	.	224	7	207	3	A|0.712;G|0.288	0	0	0	0	0
CFTR	1080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117149172	117149172	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	CFTR-518	NM_000492	exon3	c.C249G	p.F83L	TATGTTCTATGGA	.	57	22	34	0	.	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	GGCGAC	-	rs11277659	alternate_allele	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	GGCGAC	GGCGAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	PODXL-136	NM_001018111	exon1	c.84_89del	p.28_30del	TGGGAGGGCGACG	.	69	20	8	2	.	0	0	0	0	0
MCPH1	79648	broad.mit.edu	37	8	6302794	6302794	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	MCPH1-229	NM_001172574	exon8	c.C1551T	p.D517D	AGAAGACGCATGC	.	189	7	144	0	.	10	8	2	0	0
GPR124	25960	hgsc.bcm.edu;bcgsc.ca	37	8	37686420	37686420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	GPR124-157	NM_032777	exon3	c.A353G	p.N118S	GGAACAACATCAT	.	48	8	39	0	.	0	0	0	0	0
CRH	1392	hgsc.bcm.edu	37	8	67089425	67089425	+	Silent	SNP	T	T	G	rs6159	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	CRH-90	NM_000756	exon2	c.A288C	p.G96G	GCTGCCTCCGGCG	.	60	11	0	0	T|0.642;G|0.358	0	0	0	0	0
ODF1	4956	ucsc.edu	37	8	103573037	103573037	+	Silent	SNP	G	G	C	rs62523273	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ODF1-70	NM_024410	exon2	c.G678C	p.P226P	CAACCCGTGCAGC	.	112	39	93	1	G|0.862;C|0.138	1	1	0	0	0
ODF1	4956	ucsc.edu	37	8	103573042	103573042	+	Missense_Mutation	SNP	G	G	A	rs11992195	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ODF1-70	NM_024410	exon2	c.G683A	p.S228N	CGTGCAGCCCATA	.	113	40	91	1	G|0.993;A|0.007	1	1	0	0	0
DPYS	1807	hgsc.bcm.edu	37	8	105479146	105479146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	DPYS-229	NM_001385	exon1	c.G3A	p.M1I	CGCCGCCATAGCG	.	23	11	1	0	.	0	0	0	0	0
ENPP2	5168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	120594822	120594822	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ENPP2-292	NM_006209	exon19	c.G1720C	p.A574P	TAGGAGCTGGCTT	.	162	44	90	0	.	365	365	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	35	12	2	0	A|0.118;G|0.882	8	4	4	0	0
FAM83H	286077	hgsc.bcm.edu	37	8	144810138	144810138	+	Missense_Mutation	SNP	G	G	A	rs1137806		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	FAM83H-92	NM_198488	exon5	c.C1493T	p.P498L	AGCTCCGGGAAGC	.	20	12	1	0	G|0.853;A|0.147	16	7	9	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	60	28	0	0	A|0.738;G|0.262	18	9	9	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144999417	144999417	+	Silent	SNP	C	C	T	rs55836855	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	PLEC-141	NM_201380	exon31	c.G5091A	p.A1697A	CTGCCGCGCTCGC	.	18	10	1	0	C|0.731;T|0.269	1	1	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	rs11136334	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	PLEC-141	NM_201380	exon27	c.G4157A	p.R1386Q	TCCTGCCGCAGCT	.	40	20	0	0	C|0.707;T|0.293	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	53	24	0	0	G|0.246;A|0.754	25	16	9	0	0
SCRT1	83482	hgsc.bcm.edu	37	8	145557497	145557497	+	Missense_Mutation	SNP	A	A	C	rs7013127		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	.	NM_031309	exon2	c.T397G	p.S133A	CGGCAGAGCCGGC	.	7	7	0	0	A|0.096;C|0.904	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	39	38	0	0	G|0.992;C|0.006	7	0	7	0	0
JAK2	3717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5055714	5055714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	JAK2-75307	NM_004972	exon8	c.A982G	p.I328V	GTCAGTATTAAGC	.	21	10	51	0	.	1	1	0	0	0
JAK2	3717	broad.mit.edu	37	9	5089735	5089735	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	JAK2-75307	NM_004972	exon20	c.T2633C	p.V878A	GGGAGGTGGTCGC	.	48	4	109	0	.	3	3	0	0	0
ANKRD18B	441459	bcgsc.ca	37	9	33524684	33524684	+	Missense_Mutation	SNP	G	G	A	rs3843933	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	.	NM_001244752	exon1	c.G197A	p.R66K	GCGACAGAAAAGA	.	60	4	90	1	G|0.284;A|0.716	0	0	0	0	0
ODF2	4957	broad.mit.edu	37	9	131245096	131245096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ODF2-69	NM_153435	exon10	c.G1109T	p.R370L	CCCAGCGCCTGCT	.	120	4	150	1	.	0	0	0	0	0
CCBL1	883	broad.mit.edu	37	9	131597770	131597770	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	CCBL1-91	NM_001122671	exon10	c.C1032A	p.I344I	GTCTGAGATGTCT	.	113	3	76	0	.	0	0	0	0	0
LRRC26	389816	hgsc.bcm.edu	37	9	140064315	140064315	+	Missense_Mutation	SNP	C	C	A	rs7019671		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	LRRC26-22	NM_001013653	exon1	c.G81T	p.Q27H	CGACACCTGGGCC	.	6	6	0	0	C|0.733;A|0.267	0	0	0	0	0
PPP2R3B	28227	bcgsc.ca	37	X	299360	299360	+	Missense_Mutation	SNP	G	G	A	rs1133520	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	PPP2R3B-136	NM_013239	exon12	c.C1556T	p.A519V	TCTCCCGCAGTCT	.	70	4	70	0	G|0.755;A|0.245	0	0	0	0	0
FRMPD4	9758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12736016	12736016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	FRMPD4-263	NM_014728	exon16	c.C3071A	p.T1024N	CCTGCACTAGCAA	.	203	123	382	1	.	0	0	0	0	0
SCML2	10389	broad.mit.edu;bcgsc.ca	37	X	18343062	18343062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	SCML2-226	NM_006089	exon4	c.G127T	p.G43W	TAGACCCAGTCTC	.	203	6	388	1	.	0	0	0	0	0
SUPT20HL2	170067	bcgsc.ca	37	X	24329897	24329902	+	In_Frame_Del	DEL	AGCAGG	AGCAGG	-	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	AGCAGG	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	.	NM_001136233	exon1	c.1531_1536del	p.511_512del	AGCAGCAGCAGGA	.	164	5	312	0	.	0	0	0	0	0
SUPT20HL1	100130302	bcgsc.ca	37	X	24381387	24381387	+	Silent	SNP	G	G	C	rs1207577	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	.	NM_001136234	exon1	c.G510C	p.T170T	TCCAACGATGCAG	.	594	20	1224	9	G|0.448;C|0.552	0	0	0	0	0
NUDT10	170685	bcgsc.ca	37	X	51076018	51076018	+	Silent	SNP	C	C	T	rs12846945	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	NUDT10-90	NM_153183	exon2	c.C201T	p.Y67Y	GGTGTACGAAGAG	.	196	8	204	3	C|0.864;T|0.136	2	2	0	0	0
ZNF711	7552	broad.mit.edu;bcgsc.ca	37	X	84520165	84520165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ZNF711-134	NM_021998	exon6	c.C820T	p.H274Y	AGTGGACATTCAG	.	176	9	404	1	.	24	24	0	0	0
KLHL4	56062	bcgsc.ca	37	X	86877348	86877348	+	Silent	SNP	G	G	T	rs2273050	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	KLHL4-133	NM_019117	exon5	c.G1062T	p.G354G	GGTGGGGCATGAT	.	157	9	334	0	G|0.807;T|0.193	0	0	0	0	0
MAGEA4	4103	bcgsc.ca	37	X	151092220	151092220	+	Silent	SNP	A	A	G	rs1047248	byfrequency	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	MAGEA4-194	NM_001011548	exon3	c.A84G	p.A28A	GGGTGCACAGGCT	.	176	7	327	0	A|0.460;G|0.540	0	0	0	0	0
CELSR2	1952	hgsc.bcm.edu	37	1	109792735	109792736	+	In_Frame_Ins	INS	-	-	CGC	rs144034706		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	CELSR2-526	NM_001408	exon1	c.34_35insCGC	p.T12delinsTP	CTCCCAACGCCGC	.	19	10	3	0	-|0.389;CGC|0.611	0	0	0	0	0
CBX4	8535	hgsc.bcm.edu	37	17	77807917	77807918	+	In_Frame_Ins	INS	-	-	GCCGCC	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	CBX4-228	NM_003655	exon5	c.1524_1525insGGCGGC	p.A508delinsAAA	TGCCGCTGCCGCC	.	56	30	32	0	.	0	0	0	0	0
HSPBP1	23640	broad.mit.edu	37	19	55790886	55790887	+	In_Frame_Ins	INS	-	-	GCCGCCGCC	rs3040014	bycluster;by1000genomes	TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	HSPBP1-90	NM_001130106	exon3	c.91_92insGGCGGCGGC	p.S31delinsGGGS	CCGAGGAGCCGCC	.	64	0	21	0	.	0	0	0	0	0
LAMA5	3911	broad.mit.edu	37	20	60895697	60895698	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	LAMA5-93	NM_005560	exon50	c.6677_6678insC	p.R2226fs	TCATGGCGGGGGC	.	65	8	23	0	.	0	0	0	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46012219	46012220	+	In_Frame_Ins	INS	-	-	GGGGCGCAGCAGCTG	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	KRTAP10-6-90	NM_198688	exon1	c.147_148insCAGCTGCTGCGCCCC	p.P49delinsPSCCAP	GGGGGCCGGGGCG	.	96	12	50	0	.	0	0	0	0	0
KCTD8	386617	hgsc.bcm.edu	37	4	44449953	44449954	+	In_Frame_Ins	INS	-	-	CCA	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	KCTD8-92	NM_198353	exon1	c.588_589insTGG	p.G196delinsGG	GCCGCCGCCACCA	.	25	10	0	0	.	0	0	0	0	0
ADAMTS19	171019	hgsc.bcm.edu	37	5	128797315	128797316	+	In_Frame_Ins	INS	-	-	CCCGGC	rs142924298		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	ADAMTS19-295	NM_133638	exon2	c.594_595insCCCGGC	p.N198delinsNPG	GCCAAATCCCGGC	.	42	12	5	0	-|0.817;CCCGGC|0.183	0	0	0	0	0
SLC4A2	6522	hgsc.bcm.edu;broad.mit.edu	37	7	150763615	150763616	+	In_Frame_Ins	INS	-	-	GGAGGC	rs150330052		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	SLC4A2-90	NM_001199692	exon6	c.590_591insGGAGGC	p.E197delinsEEA	AGGTGGAGGAGGC	.	50	10	7	0	-|0.038;GGAGGC|0.962	0	0	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76752544	76752545	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-OR-A5J9-01A-11D-A29I-10	TCGA-OR-A5J9-10A-01D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0e14fd74-7eaa-4401-8daa-ec9e467b4299	e0439659-3c97-4d71-a90e-4be39c757a3a	.	SALL3-155	NM_171999	exon2	c.C554T	p.A185L	AGGGCGCGCGCGC	.	6	3	0	0	C|0.967;T|0.033	0	0	0	0	0