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E-MTAB-14958 RNA-seq of coding RNA from single cells Mus musculus, Mus musculus

Single cell expression profiling of NG2 cell lineage upon constitutive activation of Wnt/β-catenin signaling in adult mice cortex three days after focal celebral ischemia

·发布 2026年8月5日
2
样本数
8
实验数
实验描述

Ischemic stroke is a severe medical condition that leads to neurological impairments, including the loss of sensory, motor, and cognitive functions. Focal cerebral ischemia (FCI) occurs when blood supply to a specific brain region is interrupted, resulting in cell death. Cells expressing neural-glial antigen 2 (NG2) include glial cells, primarily oligodendrocyte precursors, and perivascular cells. In both cell types, the canonical Wnt signaling pathway is active, with its activity increasing after ischemic injury, influencing the tissue’s response to damage. Following ischemia, NG2 glia rapidly proliferate, migrate to the injury site, contribute to glial scar formation alongside astrocytes, and play a role in brain tissue regeneration. Their potential to differentiate into cell types beyond oligodendrocytes has been documented. Perivascular cells, which regulate vascular contraction, serve as an informational bridge between vascular endothelial cells and glial cells, particularly astrocytes. The plasticity of pericytes following brain injury has also been suggested. Previously, we analyzed NG2-expressing cells in Rosa26-tdTomato/Cspg4-CreERT2 mice three days after middle cerebral artery occlusion (MCAO) or sham surgery (CTRL) without Wnt pathway modulation (ArrayExpress accession number: E-MTAB-11967). In this study, we extended our analysis by constitutively activating the Wnt/β-catenin signaling pathway, which is crucial for stem cell maintenance, proliferation, and neuronal differentiation. To investigate these processes, we isolated NG2 cells and their derivatives labeled with the red fluorescent protein tdTomato from the cortex of Rosa26-tdTomato/Cspg4-CreERT2 mice three days after MCAO. Mice subjected to sham surgery served as healthy controls. Wnt pathway activation was achieved using an allele that enables constitutive stabilization of β-catenin (Ctnnb1 delEx3). Our aim was to determine how the Wnt pathway overactivation affects the distribution of NG2 glial and perivascular cell subtypes, identify their derivatives in the cortex of healthy and ischemic mice, and characterize their abundance and gene expression profiles.

样本属性
Organism
Mus musculus
Strain
C57BL/6
Age
50-56
Developmental stage
adult
Sex
male
Organism part
brain cortex
Cell type
tdTomato/NG2-positive viable cells, CD31/45-negative
Genotype
Ctnnb1-delEx3/Rosa26-tdTomato/Cspg4-CreERT2
Individual
1-8, 9-16
Injury
sham operation, middle cerebral artery occlusion
实验信息
登记号
E-MTAB-14958
实验类型
RNA-seq of coding RNA from single cells
物种
Mus musculus, Mus musculus
发布日期
2026年8月5日
提交者
Jan Kubovčiak、 Tomáš Knotek、 Lucie Janeckova、 Vladimir Korinek、 Miroslava Anderova、 Jan Kriska、 Michal Kolar
分析服务
分析服务

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