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E-GEOD-59003 SRP043974, GSE59003 ChIP-seq Saccharomyces cerevisiae

Acetylation of histone H4 at lysine 44 facilitates meiotic recombination by creating accessible chromatin [ChIP-seq]

·发布 2015年12月7日 ·更新 2015年12月12日
22
样本数
22
实验数
实验描述

Meiotic recombination hotspots are associated with histone post-translational modifications and open chromatin. However, it remains unclear how histone modifications and chromatin structure directly regulate meiotic recombination. Here, we identify acetylation of histone H4 at Lys44 (H4K44ac) as a new histone modification, occurring on the nucleosomal lateral surface. We show that H4K44ac is specific to yeast sporulation, rising during yeast meiosis and displaying genome-wide enrichment at recombination hotspots in meiosis. The H4K44 residue is required for normal meiotic recombination, for normal levels of double strand breaks during meiosis, and for optimal sporulation. Non-modifiable substitution H4K44R results in reduced MNase digestion and decreased binding of recombination-associated proteins at hotspots. Our results show that H4K44ac creates an accessible chromatin environment for key proteins to facilitate meiotic recombination. One sample, H4K44ac chIP from 4hrs sporulation yeast and one background H4 chIP from the same, two replicates each Two replicates each of H3K4me3 and H3K56ac chIP-seq in WT and H4K44->R mutant yeast, with two replicates of H3 chIP-seq in each genetic background Two replicates each of Rad51 chIP-seq in WT and H4K44->R mutant yeast with a single replicate of accompanying input DNA in each genetic background

样本属性
antibody
Abcam (ab1791), Abcam (ab8580), Active Motif (39281), Santa Cruz Biotechnology (sc-33626)
chip antibody
H4, H4K44ac
chip antibody cat.#
ab7311, custom-made
chip antibody vendor
Abcam, Active Motif
genetic background
Mutant, WT
genotype
WT
immunoprecipitate
H3, H3K4me3, H3K56ac, Input, Rad51
organism
Saccharomyces cerevisiae
replicate
1, 2
sporulation time
4hrs
strain
SK1
实验信息
登记号
E-GEOD-59003
GEO 编号
SRP043974, GSE59003
实验类型
ChIP-seq
物种
Saccharomyces cerevisiae
发布日期
2015年12月7日
更新日期
2015年12月12日
提交者
Zuofei Yuan、 Jean Dorsey、 Parisha P Shah、 Shelley L Berger、 Jialei Hu、 Gregory Donahue、 Benjamin A Garcia、 Greg Donahue、 Jérôme Govin
分析服务
分析服务

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