主页 实验库实验详情
E-GEOD-42109 GSE42109 transcription profiling by array Homo sapiens

Identification of anaplastic lymphoma kinase as a candidate of new therapeutic target for BCC

·发布 2013年1月30日 ·更新 2014年6月2日
21
样本数
21
实验数
2
芯片平台
实验描述

Background; Basal cell carcinoma (BCC) is the most common cancer in humans. The pathogenesis of BCC is associated with the sonic hedgehog (SHH) signaling pathway. Vismodegib, a smoothened inhibitor, that targets this pathway is now in clinical use for advanced BCC patients, but its efficacy is limited. Therefore, new therapeutic options for this cancer are required. Methods; We studied gene expression profiling of BCC tumour tissue coupled with laser capture microdissection to identify tumor specific receptor tyrosine kinase expression that can be targeted by small molecule inhibitors. The expression of selected molecules was confirmed by quantitative RT-PCR (qRT-PCR) and by immunohistochemistry. The action of kinase inhibitors was examined on primary normal human epidermal keratinocytes. Results; We found a >250 fold change increase (false discovery rate <10-4) of the oncogene, anaplastic lymphoma kinase (ALK) as well as its ligands, pleiotrophin and midkine in BCC compared to microdissected normal epidermis. qRT-PCR confirmed increased expression of ALK (p<0.05). Stronger staining of phosphorylated ALK in BCC tumour nests than normal skin was observed by immunohistochemistry. Additionally, Crizotinib, an FDA-approved ALK inhibitor, reduced keratinocyte proliferation in culture, whereas a c-Met, another receptor tyrosine kinase, inhibitor did not. Crizotinib significantly reduced the expression of GLI1 and CCND2 mRNA by approximately 60% and 20%, respectively (p<0.05). Conclusions; Our data suggest that ALK may increase GLI1 expression in parallel with the conventional SHH-pathway and promotes keratinocyte proliferation. Furthermore, an ALK inhibitor alone or in combination with targeting SHH-pathway molecules may be a potential treatment for BCC patients. Laser capture microdissection was performed on 5 cases of nodular/superficial BCC, 5 cases of infiltrative BCC.

芯片平台
A-AFFY-44
Affymetrix GeneChip Human Genome U133 Plus 2.0 [HG-U133_Plus_2](10 例)
A-AFFY-37
Affymetrix GeneChip Human Genome U133A 2.0 [HG-U133A_2](11 例)
样本属性
cell type
infiltrative basal cell carcinoma (BCC), localized basal cell carcinoma (BCC), normal epidermis
material
sliced section
Organism
Homo sapiens
patient
1, 10, 2, 3, 4, 5, 6, 7, 8, 9, healthy volunteer 1, healthy volunteer 10, healthy volunteer 2, healthy volunteer 3, healthy volunteer 4, healthy volunteer 5, healthy volunteer 6, healthy volunteer 7, healthy volunteer 8, healthy volunteer 9
实验信息
登记号
E-GEOD-42109
GEO 编号
GSE42109
实验类型
transcription profiling by array
物种
Homo sapiens
发布日期
2013年1月30日
更新日期
2014年6月2日
提交者
Mayte Suarez-Farinas、 James G Krueger、 Hanna Ning、 Hiroshi Mitsui、 Mayte Suárez-Fariñas
分析服务
分析服务

联系地址

山东省济南市章丘区文博路2号

齐鲁师范学院 genelibs生信实验室

山东省济南市高新区舜华路750号

大学科技园北区F座4单元2楼

电话: 0531-88819269

微信公众号

关注微信订阅号,实时查看信息,关注医学生物学动态。


商务邮箱

E-mail: product@genelibs.com