主页 实验库实验详情
E-GEOD-40464 GSE40464 transcription profiling by array Homo sapiens

FC-IBC-02: A New in vitro-in vivo Model of Triple Negative Inflammatory Breast Cancer

·发布 2012年9月20日 ·更新 2014年5月2日
14
样本数
14
实验数
1
芯片平台
实验描述

Inflammatory breast cancer (IBC) is the most aggressive type of advanced breast cancer and is associated with a poor prognosis. We have developed a new model of IBC derivated from the pleural effusion of a 49-year-old woman with metastatic secondary IBC. FC-IBC02 tumor cells were isolated from the pleural effusion and cultured under non-adherent conditions, resulting in the formation of spheroids or mammospheres. FC-IBC02 are triple negative (estrogen receptor negative, progesterone receptor negative and ErbB2 negative) and strongly positive for E-cadherin, beta-catenin and vimentin. FC-IBC02 cells developed breast tumors when they were injected into the mammary fat pad of SCID mice and characteristic tumor emboli were detected. Breast tumor xenografts were poorly differentiated triple negative carcinomas and all injected mice developed metastasis in the lungs and lymph nodes. These IBC tumor cells showed genomic alterations in all chromosomes, with the gains/amplifications more common than the deletions/losses. Duplicated regions were on 1q, 2p, 3q, 8q and 18p and chromosomes 7 and 9. The 8q chromosome arm where the MYC oncogene resides was amplified up to seven fold. Chromothripsis (local chromosome shattering) was observed on chromosome 11q and losses were found on 8p, 11q, 16q and 17p (location of TP53). FC-IBC-02 cells expressed the stem cell marker CD44, EpCAM and strongly expressed EGFR and ALK. In summary, this novel preclinical model demonstrated that IBC is a disease enriched for highly tumorigenic cells which harbor a stem cell phenotype. This IBC model is ideal for the study of the metastatic process and to evaluate targeting therapeutic modalities. Total RNA were isolated from IBC-02, IBC-02 in mammosphere growth, IBC3, SUM149, SUM190, MDA-MB231, and MDA-MB468 cell lines. Affymetrix Human U133 Plus 2.0 arrays were used for whole-genome gene expression assays. Duplicate samples were analyzed for each cell line.

芯片平台
A-AFFY-44
Affymetrix GeneChip Human Genome U133 Plus 2.0 [HG-U133_Plus_2](14 例)
样本属性
cell line
IBC-02, IBC3, MDA-MB231, MDA-MB468, SUM149, SUM190
cell type
metastatic cells of breast cancer
growth type
adhesive, mammosphere
Organism
Homo sapiens
source
pleural effusion, pleural effusion from patient with metastatic secondary inflammatory breast cancer (IBC)
实验信息
登记号
E-GEOD-40464
GEO 编号
GSE40464
实验类型
transcription profiling by array
物种
Homo sapiens
发布日期
2012年9月20日
更新日期
2014年5月2日
提交者
Lucy Aburto、 Kathy Q Cail、 Fredika M Robertson、 Andres Klein-Szanto、 Zuejun Zhang、 Yong Huang、 Sandra V Fernandez、 Zaiming Ye、 Khoi Chu、 Massimo Cristofanilli、 Yong Huang、 Katherine Alpaugh、 Karthik Devarajan、 Jianming Pei、 Kimberly M Boley、 Moisha C Wright、 Yu Cao
分析服务
分析服务

联系地址

山东省济南市章丘区文博路2号

齐鲁师范学院 genelibs生信实验室

山东省济南市高新区舜华路750号

大学科技园北区F座4单元2楼

电话: 0531-88819269

微信公众号

关注微信订阅号,实时查看信息,关注医学生物学动态。


商务邮箱

E-mail: product@genelibs.com